# DREME 4.12.0 # command: dreme -v 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/Retina/hg38_ret_noTSS_filtered_labeled_500bp.MemeChipResults/dreme_out -png -dna -p /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/Retina/hg38_ret_noTSS_filtered_labeled_500bp.MemeChipResults/seqs-centered -n /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/Retina/hg38_ret_noTSS_filtered_labeled_500bp.MemeChipResults/seqs-shuffled # positives: 50773 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/Retina/hg38_ret_noTSS_filtered_labeled_500bp.MemeChipResults/seqs-centered (Thu Oct 07 08:48:22 EDT 2021) # negatives: 50773 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/Retina/hg38_ret_noTSS_filtered_labeled_500bp.MemeChipResults/seqs-shuffled (Thu Oct 07 08:48:23 EDT 2021) # host: compute-0-40.local # when: Thu Oct 07 09:28:07 EDT 2021 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.252 C 0.248 G 0.248 T 0.253 MOTIF RGATTA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST RGATTA TAATCY 13133 3787 1.2e-1413 5.4e-1409 # GGATTA TAATCC 8465 1636 3.6e-1211 1.7e-1206 # AGATTA TAATCT 6172 2248 2.4e-451 1.1e-446 letter-probability matrix: alength= 4 w= 6 nsites= 16305 E= 5.4e-1409 0.417418 0.000000 0.582582 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGRTGGCR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AGRTGGCR YGCCAYCT 3436 798 1.6e-402 7.3e-398 # AGATGGCA TGCCATCT 1317 314 2.2e-148 9.8e-144 # AGGTGGCA TGCCACCT 1225 320 8.7e-127 4.0e-122 # AGGTGGCG CGCCACCT 523 91 2.5e-075 1.1e-070 # AGATGGCG CGCCATCT 400 75 3.5e-055 1.6e-050 letter-probability matrix: alength= 4 w= 8 nsites= 3485 E= 7.3e-398 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.495839 0.000000 0.504161 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.734577 0.000000 0.265423 0.000000 MOTIF STVATTA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST STVATTA TAATBAS 5782 2681 1.7e-277 7.6e-273 # GTGATTA TAATCAC 1354 394 2.7e-125 1.2e-120 # CTCATTA TAATGAG 1467 636 5.3e-077 2.4e-072 # GTAATTA TAATTAC 809 318 1.2e-050 5.4e-046 # CTGATTA TAATCAG 1314 674 1.4e-048 6.4e-044 # CTAATTA TAATTAG 877 444 7.4e-034 3.3e-029 # GTCATTA TAATGAC 686 398 6.0e-019 2.7e-014 letter-probability matrix: alength= 4 w= 7 nsites= 6394 E= 7.6e-273 0.000000 0.563653 0.436347 0.000000 0.000000 0.000000 0.000000 1.000000 0.226619 0.345324 0.428058 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACNG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CACNG CNGTG 32496 27378 1.7e-234 7.6e-230 # CACAG CTGTG 19257 14961 1.7e-179 7.8e-175 # CACTG CAGTG 17536 14671 1.7e-083 7.9e-079 # CACGG CCGTG 4234 3086 1.7e-044 7.8e-040 # CACCG CGGTG 3560 3085 8.9e-010 4.0e-005 letter-probability matrix: alength= 4 w= 5 nsites= 51857 E= 7.6e-230 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.451492 0.068978 0.083210 0.396321 0.000000 0.000000 1.000000 0.000000 MOTIF AGRGGGCR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGRGGGCR YGCCCYCT 2730 1052 4.8e-176 2.1e-171 # AGAGGGCG CGCCCTCT 567 109 2.8e-076 1.2e-071 # AGAGGGCA TGCCCTCT 1088 424 1.2e-068 5.3e-064 # AGGGGGCG CGCCCCCT 477 154 7.1e-040 3.1e-035 # AGGGGGCA TGCCCCCT 622 376 2.4e-015 1.0e-010 letter-probability matrix: alength= 4 w= 8 nsites= 2766 E= 2.1e-171 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.601229 0.000000 0.398771 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.620752 0.000000 0.379248 0.000000 MOTIF GHWTTA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GHWTTA TAAWDC 12666 9070 1.9e-167 8.3e-163 # GTATTA TAATAC 2108 1160 8.7e-065 3.8e-060 # GATTTA TAAATC 2683 1646 4.3e-059 1.9e-054 # GAATTA TAATTC 2562 1613 1.8e-051 8.1e-047 # GCATTA TAATGC 2697 1997 6.2e-026 2.7e-021 # GCTTTA TAAAGC 2803 2234 1.0e-016 4.5e-012 # GTTTTA TAAAAC 1862 1502 1.5e-010 6.5e-006 letter-probability matrix: alength= 4 w= 6 nsites= 15153 E= 8.3e-163 0.000000 0.000000 1.000000 0.000000 0.354913 0.378209 0.000000 0.266878 0.505774 0.000000 0.000000 0.494226 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACGT DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ACGT ACGT 4959 2836 5.5e-140 2.4e-135 # ACGT ACGT 4959 2836 5.5e-140 2.4e-135 letter-probability matrix: alength= 4 w= 4 nsites= 5292 E= 2.4e-135 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CDGGRA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CDGGRA TYCCHG 17877 14282 2.4e-130 1.0e-125 # CTGGGA TCCCAG 5486 3865 8.3e-070 3.5e-065 # CAGGGA TCCCTG 5264 4075 1.8e-038 7.7e-034 # CAGGAA TTCCTG 4407 3430 7.4e-031 3.1e-026 # CTGGAA TTCCAG 4174 3465 1.7e-017 7.4e-013 # CGGGAA TTCCCG 856 578 7.4e-014 3.1e-009 # CGGGGA TCCCCG 1180 885 2.9e-011 1.2e-006 letter-probability matrix: alength= 4 w= 6 nsites= 22110 E= 1.0e-125 0.000000 1.000000 0.000000 0.000000 0.454591 0.000000 0.094301 0.451108 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.438082 0.000000 0.561918 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RGCTTA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST RGCTTA TAAGCY 7162 4771 5.5e-121 2.3e-116 # GGCTTA TAAGCC 3664 2147 1.6e-094 6.5e-090 # AGCTTA TAAGCT 3909 2753 4.8e-049 2.0e-044 letter-probability matrix: alength= 4 w= 6 nsites= 7990 E= 2.3e-116 0.519024 0.000000 0.480976 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAKCTGB DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CAKCTGB VCAGMTG 7769 5377 1.8e-111 7.4e-107 # CATCTGT ACAGATG 1242 590 1.4e-054 5.8e-050 # CAGCTGT ACAGCTG 1305 801 4.6e-029 1.9e-024 # CATCTGC GCAGATG 1691 1120 3.7e-028 1.6e-023 # CATCTGG CCAGATG 1403 913 3.0e-025 1.2e-020 # CAGCTGG CCAGCTG 2024 1539 6.9e-017 2.9e-012 # CAGCTGC GCAGCTG 2227 1730 4.0e-016 1.7e-011 letter-probability matrix: alength= 4 w= 7 nsites= 8561 E= 7.4e-107 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.483588 0.516412 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.401238 0.347039 0.251723 MOTIF CCACYAGR DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CCACYAGR YCTRGTGG 2079 941 1.4e-100 5.8e-096 # CCACTAGA TCTAGTGG 631 175 5.6e-062 2.3e-057 # CCACTAGG CCTAGTGG 509 207 1.0e-030 4.2e-026 # CCACCAGG CCTGGTGG 592 315 8.7e-021 3.6e-016 # CCACCAGA TCTGGTGG 368 247 5.6e-007 2.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 2115 E= 5.8e-096 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.455792 0.000000 0.544208 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.476123 0.000000 0.523877 0.000000 MOTIF CNKCCTCC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CNKCCTCC GGAGGMNG 3193 1795 6.2e-093 2.6e-088 # CAGCCTCC GGAGGCTG 792 405 5.1e-030 2.1e-025 # CCGCCTCC GGAGGCGG 335 112 2.7e-027 1.1e-022 # CCTCCTCC GGAGGAGG 630 332 1.5e-022 6.4e-018 # CTGCCTCC GGAGGCAG 688 394 1.0e-019 4.3e-015 # CTTCCTCC GGAGGAAG 419 272 1.1e-008 4.7e-004 # CGGCCTCC GGAGGCCG 195 110 6.3e-007 2.6e-002 # CATCCTCC GGAGGATG 287 224 3.0e-003 1.2e+002 # CGTCCTCC GGAGGACG 59 34 6.2e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 3353 E= 2.6e-088 0.000000 1.000000 0.000000 0.000000 0.320012 0.278258 0.074560 0.327170 0.000000 0.000000 0.597674 0.402326 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAATMC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AAATMC GKATTT 4405 2769 3.3e-090 1.4e-085 # AAATCC GGATTT 2526 1450 7.6e-069 3.2e-064 # AAATAC GTATTT 1982 1354 8.8e-029 3.7e-024 letter-probability matrix: alength= 4 w= 6 nsites= 4628 E= 1.4e-085 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.437122 0.562878 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TATTWWTA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST TATTWWTA TAWWAATA 957 300 1.8e-081 7.4e-077 # TATTTTTA TAAAAATA 414 115 4.1e-041 1.7e-036 # TATTTATA TATAAATA 272 78 1.1e-026 4.7e-022 # TATTAATA TATTAATA 117 31 2.9e-013 1.2e-008 # TATTATTA TAATAATA 163 81 8.1e-008 3.3e-003 letter-probability matrix: alength= 4 w= 8 nsites= 970 E= 7.4e-077 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.287629 0.000000 0.000000 0.712371 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGSCDG DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CAGSCDG CHGSCTG 7255 5560 4.0e-058 1.7e-053 # CAGCCTG CAGGCTG 2527 1680 4.8e-041 2.0e-036 # CAGGCAG CTGCCTG 2239 1763 8.6e-015 3.6e-010 # CAGCCAG CTGGCTG 2098 1728 5.8e-010 2.4e-005 # CAGCCGG CCGGCTG 527 408 5.2e-005 2.2e+000 # CAGGCGG CCGCCTG 542 423 6.6e-005 2.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 7988 E= 1.7e-053 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.489985 0.510015 0.000000 0.000000 1.000000 0.000000 0.000000 0.546069 0.000000 0.134827 0.319104 0.000000 0.000000 1.000000 0.000000 MOTIF AGGWCAS DREME-16 # Word RC Word Pos Neg P-value E-value # BEST AGGWCAS STGWCCT 3726 2538 1.1e-054 4.7e-050 # AGGTCAC GTGACCT 758 424 5.2e-023 2.2e-018 # AGGTCAG CTGACCT 1288 855 1.5e-021 6.1e-017 # AGGACAG CTGTCCT 1181 861 4.5e-013 1.8e-008 # AGGACAC GTGTCCT 587 448 7.9e-006 3.3e-001 letter-probability matrix: alength= 4 w= 7 nsites= 3849 E= 4.7e-050 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.463237 0.000000 0.000000 0.536763 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.351780 0.648220 0.000000 MOTIF TTATRTAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST TTATRTAA TTAYATAA 439 102 2.5e-051 1.0e-046 # TTATGTAA TTACATAA 332 67 9.7e-044 4.0e-039 # TTATATAA TTATATAA 109 35 2.4e-010 9.7e-006 letter-probability matrix: alength= 4 w= 8 nsites= 452 E= 1.0e-046 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.245575 0.000000 0.754425 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RGAWAA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST RGAWAA TTWTCY 8918 7290 1.6e-044 6.4e-040 # GGATAA TTATCC 1741 1140 2.6e-030 1.1e-025 # GGAAAA TTTTCC 2156 1687 6.5e-015 2.7e-010 # AGAAAA TTTTCT 3521 3112 1.1e-007 4.5e-003 # AGATAA TTATCT 2164 1868 1.1e-006 4.3e-002 letter-probability matrix: alength= 4 w= 6 nsites= 9893 E= 6.4e-040 0.597999 0.000000 0.402001 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.593349 0.000000 0.000000 0.406651 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCWCACRC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST GCWCACRC GYGTGWGC 955 460 5.0e-041 2.0e-036 # GCTCACGC GCGTGAGC 239 71 8.9e-023 3.6e-018 # GCACACAC GTGTGTGC 325 164 1.3e-013 5.1e-009 # GCTCACAC GTGTGAGC 295 175 1.6e-008 6.5e-004 # GCACACGC GCGTGTGC 108 54 1.3e-005 5.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 980 E= 2.0e-036 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.455102 0.000000 0.000000 0.544898 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.648980 0.000000 0.351020 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACATGRY DREME-20 # Word RC Word Pos Neg P-value E-value # BEST CACATGRY RYCATGTG 1286 722 1.2e-037 4.7e-033 # CACATGGC GCCATGTG 422 211 1.4e-017 5.9e-013 # CACATGGT ACCATGTG 365 195 2.7e-013 1.1e-008 # CACATGAC GTCATGTG 280 154 7.0e-010 2.9e-005 # CACATGAT ATCATGTG 232 165 4.4e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1310 E= 4.7e-033 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.393893 0.000000 0.606107 0.000000 0.000000 0.541221 0.000000 0.458779 MOTIF CTCCCKCY DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CTCCCKCY RGMGGGAG 1578 970 1.0e-034 4.1e-030 # CTCCCTCT AGAGGGAG 744 426 3.3e-021 1.4e-016 # CTCCCTCC GGAGGGAG 566 356 1.9e-012 7.8e-008 # CTCCCGCT AGCGGGAG 147 86 3.8e-005 1.6e+000 # CTCCCGCC GGCGGGAG 172 113 2.8e-004 1.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1629 E= 4.1e-030 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.193984 0.806016 0.000000 1.000000 0.000000 0.000000 0.000000 0.453039 0.000000 0.546961 MOTIF TGACTCAB DREME-22 # Word RC Word Pos Neg P-value E-value # BEST TGACTCAB VTGAGTCA 954 511 5.0e-032 2.0e-027 # TGACTCAT ATGAGTCA 362 170 2.3e-017 9.6e-013 # TGACTCAG CTGAGTCA 409 223 5.2e-014 2.1e-009 # TGACTCAC GTGAGTCA 200 118 2.4e-006 9.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 981 E= 2.0e-027 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.205912 0.420999 0.373089 MOTIF GCBCCRCC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GCBCCRCC GGYGGVGC 1238 731 2.6e-031 1.1e-026 # GCCCCGCC GGCGGGGC 298 130 1.2e-016 5.1e-012 # GCTCCACC GGTGGAGC 357 208 1.7e-010 6.9e-006 # GCCCCACC GGTGGGGC 289 195 1.1e-005 4.4e-001 # GCTCCGCC GGCGGAGC 136 81 1.1e-004 4.6e+000 # GCGCCACC GGTGGCGC 79 44 1.0e-003 4.2e+001 # GCGCCGCC GGCGGCGC 128 83 1.2e-003 4.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1312 E= 1.1e-026 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.465701 0.157012 0.377287 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.554878 0.000000 0.445122 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF DTWAA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST DTWAA TTWAH 16637 15018 2.9e-028 1.2e-023 # ATTAA TTAAT 3924 3321 1.0e-013 4.3e-009 # TTAAA TTTAA 5171 4546 1.4e-011 5.6e-007 # GTTAA TTAAC 4198 3882 1.3e-004 5.3e+000 # GTAAA TTTAC 4602 4316 7.9e-004 3.2e+001 # ATAAA TTTAT 5386 5102 1.8e-003 7.2e+001 letter-probability matrix: alength= 4 w= 5 nsites= 21363 E= 1.2e-023 0.412302 0.000000 0.386088 0.201610 0.000000 0.000000 0.000000 1.000000 0.546412 0.000000 0.000000 0.453588 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCCBGGC DREME-25 # Word RC Word Pos Neg P-value E-value # BEST GCCBGGC GCCVGGC 1887 1290 2.3e-027 9.0e-023 # GCCCGGC GCCGGGC 652 380 7.5e-018 2.9e-013 # GCCTGGC GCCAGGC 1271 933 1.8e-013 7.0e-009 letter-probability matrix: alength= 4 w= 7 nsites= 1950 E= 9.0e-023 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.173846 0.166667 0.659487 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACACRCA DREME-26 # Word RC Word Pos Neg P-value E-value # BEST ACACRCA TGYGTGT 980 575 1.5e-025 5.9e-021 # ACACACA TGTGTGT 802 448 2.4e-024 9.5e-020 # ACACGCA TGCGTGT 200 132 1.1e-004 4.3e+000 letter-probability matrix: alength= 4 w= 7 nsites= 1127 E= 5.9e-021 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.823425 0.000000 0.176575 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGCYCHG DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CAGCYCHG CDGRGCTG 2708 2024 1.2e-024 4.5e-020 # CAGCCCTG CAGGGCTG 693 458 1.7e-012 6.7e-008 # CAGCTCAG CTGAGCTG 624 458 2.2e-007 8.6e-003 # CAGCTCTG CAGAGCTG 673 538 5.3e-005 2.1e+000 # CAGCCCAG CTGGGCTG 551 450 7.4e-004 2.9e+001 # CAGCCCCG CGGGGCTG 158 112 3.0e-003 1.2e+002 # CAGCTCCG CGGAGCTG 114 76 3.5e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 2820 E= 4.5e-020 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.498936 0.000000 0.501064 0.000000 1.000000 0.000000 0.000000 0.416667 0.097518 0.000000 0.485816 0.000000 0.000000 1.000000 0.000000 MOTIF CTGTYWC DREME-28 # Word RC Word Pos Neg P-value E-value # BEST CTGTYWC GWRACAG 2788 2118 5.4e-023 2.1e-018 # CTGTTTC GAAACAG 694 482 2.7e-010 1.1e-005 # CTGTCAC GTGACAG 737 521 4.9e-010 1.9e-005 # CTGTCTC GAGACAG 1025 830 2.7e-006 1.1e-001 # CTGTTAC GTAACAG 390 310 1.4e-003 5.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 2854 E= 2.1e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.619832 0.000000 0.380168 0.395585 0.000000 0.000000 0.604415 0.000000 1.000000 0.000000 0.000000 MOTIF AGCACTTW DREME-29 # Word RC Word Pos Neg P-value E-value # BEST AGCACTTW WAAGTGCT 635 343 2.3e-021 8.9e-017 # AGCACTTT AAAGTGCT 457 221 2.9e-020 1.1e-015 # AGCACTTA TAAGTGCT 178 124 1.1e-003 4.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 636 E= 8.9e-017 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.279874 0.000000 0.000000 0.720126 MOTIF CARAGCC DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CARAGCC GGCTYTG 2786 2153 1.3e-020 5.2e-016 # CAAAGCC GGCTTTG 1235 905 3.0e-013 1.2e-008 # CAGAGCC GGCTCTG 1593 1266 3.0e-010 1.2e-005 letter-probability matrix: alength= 4 w= 7 nsites= 2874 E= 5.2e-016 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.436326 0.000000 0.563674 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGAAA DREME-31 # Word RC Word Pos Neg P-value E-value # BEST GGAAA TTTCC 5349 4485 2.5e-020 1.0e-015 # GGAAA TTTCC 5349 4485 2.5e-020 1.0e-015 letter-probability matrix: alength= 4 w= 5 nsites= 5685 E= 1.0e-015 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CRGCCWC DREME-32 # Word RC Word Pos Neg P-value E-value # BEST CRGCCWC GWGGCYG 2618 2004 1.2e-020 4.7e-016 # CAGCCTC GAGGCTG 1227 931 6.4e-011 2.5e-006 # CAGCCAC GTGGCTG 919 742 6.6e-006 2.6e-001 # CGGCCTC GAGGCCG 278 192 4.1e-005 1.6e+000 # CGGCCAC GTGGCCG 244 174 3.5e-004 1.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 2690 E= 4.7e-016 0.000000 1.000000 0.000000 0.000000 0.804833 0.000000 0.195167 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.437175 0.000000 0.000000 0.562825 0.000000 1.000000 0.000000 0.000000 MOTIF GGGAGGRK DREME-33 # Word RC Word Pos Neg P-value E-value # BEST GGGAGGRK MYCCTCCC 1021 686 1.4e-016 5.6e-012 # GGGAGGGG CCCCTCCC 446 271 2.8e-011 1.1e-006 # GGGAGGAT ATCCTCCC 141 74 2.8e-006 1.1e-001 # GGGAGGAG CTCCTCCC 260 205 6.0e-003 2.3e+002 # GGGAGGGT ACCCTCCC 187 141 6.4e-003 2.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1054 E= 5.6e-012 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.382353 0.000000 0.617647 0.000000 0.000000 0.000000 0.687856 0.312144 MOTIF CATGTGWY DREME-34 # Word RC Word Pos Neg P-value E-value # BEST CATGTGWY RWCACATG 725 461 6.1e-015 2.4e-010 # CATGTGAC GTCACATG 208 101 5.3e-010 2.1e-005 # CATGTGAT ATCACATG 200 121 5.9e-006 2.3e-001 # CATGTGTT AACACATG 172 127 5.4e-003 2.1e+002 # CATGTGTC GACACATG 157 115 6.3e-003 2.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 736 E= 2.4e-010 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.552989 0.000000 0.000000 0.447011 0.000000 0.495924 0.000000 0.504076 MOTIF CTGSGTCA DREME-35 # Word RC Word Pos Neg P-value E-value # BEST CTGSGTCA TGACSCAG 370 199 3.0e-013 1.2e-008 # CTGGGTCA TGACCCAG 305 163 2.3e-011 9.0e-007 # CTGCGTCA TGACGCAG 65 37 3.6e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 374 E= 1.2e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.176471 0.823529 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCCWGCC DREME-36 # Word RC Word Pos Neg P-value E-value # BEST CTCCWGCC GGCWGGAG 877 603 3.8e-013 1.5e-008 # CTCCTGCC GGCAGGAG 573 386 7.1e-010 2.8e-005 # CTCCAGCC GGCTGGAG 308 217 4.0e-005 1.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 883 E= 1.5e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.348811 0.000000 0.000000 0.651189 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TAATCGB DREME-37 # Word RC Word Pos Neg P-value E-value # BEST TAATCGB VCGATTA 283 137 4.0e-013 1.5e-008 # TAATCGG CCGATTA 97 42 1.7e-006 6.7e-002 # TAATCGC GCGATTA 111 56 1.2e-005 4.8e-001 # TAATCGT ACGATTA 77 39 2.7e-004 1.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 287 E= 1.5e-008 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.393728 0.337979 0.268293 MOTIF CACCACS DREME-38 # Word RC Word Pos Neg P-value E-value # BEST CACCACS SGTGGTG 1015 728 2.2e-012 8.5e-008 # CACCACC GGTGGTG 854 635 5.9e-009 2.3e-004 # CACCACG CGTGGTG 166 95 6.4e-006 2.5e-001 letter-probability matrix: alength= 4 w= 7 nsites= 1025 E= 8.5e-008 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.840000 0.160000 0.000000 MOTIF ATCTCGGC DREME-39 # Word RC Word Pos Neg P-value E-value # BEST ATCTCGGC GCCGAGAT 97 23 2.6e-012 1.0e-007 # ATCTCGGC GCCGAGAT 97 23 2.6e-012 1.0e-007 letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 1.0e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATCTGACA DREME-40 # Word RC Word Pos Neg P-value E-value # BEST ATCTGACA TGTCAGAT 308 165 2.1e-011 8.3e-007 # ATCTGACA TGTCAGAT 308 165 2.1e-011 8.3e-007 letter-probability matrix: alength= 4 w= 8 nsites= 310 E= 8.3e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGRGCTC DREME-41 # Word RC Word Pos Neg P-value E-value # BEST CTGRGCTC GAGCYCAG 842 597 4.2e-011 1.6e-006 # CTGGGCTC GAGCCCAG 444 297 3.3e-008 1.3e-003 # CTGAGCTC GAGCTCAG 403 303 9.0e-005 3.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 852 E= 1.6e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.474178 0.000000 0.525822 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTCTGCC DREME-42 # Word RC Word Pos Neg P-value E-value # BEST CTCTGCC GGCAGAG 1417 1097 5.6e-011 2.2e-006 # CTCTGCC GGCAGAG 1417 1097 5.6e-011 2.2e-006 letter-probability matrix: alength= 4 w= 7 nsites= 1431 E= 2.2e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAATSTC DREME-43 # Word RC Word Pos Neg P-value E-value # BEST AAATSTC GASATTT 1005 734 3.0e-011 1.2e-006 # AAATCTC GAGATTT 573 401 1.7e-008 6.6e-004 # AAATGTC GACATTT 438 335 1.1e-004 4.4e+000 letter-probability matrix: alength= 4 w= 7 nsites= 1016 E= 1.2e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.566929 0.433071 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF HGTGGCCA DREME-44 # Word RC Word Pos Neg P-value E-value # BEST HGTGGCCA TGGCCACD 485 305 6.8e-011 2.6e-006 # TGTGGCCA TGGCCACA 249 153 9.3e-007 3.6e-002 # AGTGGCCA TGGCCACT 203 136 1.6e-004 6.2e+000 # CGTGGCCA TGGCCACG 52 25 1.4e-003 5.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 489 E= 2.6e-006 0.398773 0.102249 0.000000 0.498978 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TAAATATA DREME-45 # Word RC Word Pos Neg P-value E-value # BEST TAAATATA TATATTTA 83 19 5.0e-011 1.9e-006 # TAAATATA TATATTTA 83 19 5.0e-011 1.9e-006 letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 1.9e-006 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATTASC DREME-46 # Word RC Word Pos Neg P-value E-value # BEST AATTASC GSTAATT 616 412 8.6e-011 3.4e-006 # AATTAGC GCTAATT 383 249 5.0e-008 1.9e-003 # AATTACC GGTAATT 233 163 2.5e-004 9.7e+000 letter-probability matrix: alength= 4 w= 7 nsites= 620 E= 3.4e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.379032 0.620968 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGAAATR DREME-47 # Word RC Word Pos Neg P-value E-value # BEST CAGAAATR YATTTCTG 419 258 2.9e-010 1.1e-005 # CAGAAATG CATTTCTG 264 165 9.6e-007 3.7e-002 # CAGAAATA TATTTCTG 155 93 4.9e-005 1.9e+000 letter-probability matrix: alength= 4 w= 8 nsites= 419 E= 1.1e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.369928 0.000000 0.630072 0.000000 MOTIF CAGCAGMG DREME-48 # Word RC Word Pos Neg P-value E-value # BEST CAGCAGMG CKCTGCTG 867 631 4.4e-010 1.7e-005 # CAGCAGAG CTCTGCTG 683 495 2.0e-008 7.7e-004 # CAGCAGCG CGCTGCTG 186 139 5.2e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 877 E= 1.7e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.786773 0.213227 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TAAGARGA DREME-49 # Word RC Word Pos Neg P-value E-value # BEST TAAGARGA TCYTCTTA 458 293 8.2e-010 3.2e-005 # TAAGAGGA TCCTCTTA 249 136 4.2e-009 1.6e-004 # TAAGAAGA TCTTCTTA 211 157 2.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 462 E= 3.2e-005 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.458874 0.000000 0.541126 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGSCCGCC DREME-50 # Word RC Word Pos Neg P-value E-value # BEST CGSCCGCC GGCGGSCG 225 118 3.8e-009 1.5e-004 # CGGCCGCC GGCGGCCG 111 48 3.1e-007 1.2e-002 # CGCCCGCC GGCGGGCG 117 76 1.9e-003 7.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 232 E= 1.5e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.521552 0.478448 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGAAGGRA DREME-51 # Word RC Word Pos Neg P-value E-value # BEST GGAAGGRA TYCCTTCC 363 224 4.8e-009 1.9e-004 # GGAAGGGA TCCCTTCC 215 137 1.8e-005 7.1e-001 # GGAAGGAA TTCCTTCC 149 89 6.0e-005 2.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 365 E= 1.9e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.408219 0.000000 0.591781 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCGGGH DREME-52 # Word RC Word Pos Neg P-value E-value # BEST CCGGGH DCCCGG 1840 1523 1.5e-008 5.7e-004 # CCGGGA TCCCGG 717 536 1.5e-007 5.8e-003 # CCGGGT ACCCGG 628 511 2.7e-004 1.1e+001 # CCGGGC GCCCGG 772 662 1.9e-003 7.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 1951 E= 5.7e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.337263 0.368529 0.000000 0.294208 MOTIF ARAACAAA DREME-53 # Word RC Word Pos Neg P-value E-value # BEST ARAACAAA TTTGTTYT 476 320 1.6e-008 6.1e-004 # AGAACAAA TTTGTTCT 266 181 3.3e-005 1.3e+000 # AAAACAAA TTTGTTTT 211 139 6.8e-005 2.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 485 E= 6.1e-004 1.000000 0.000000 0.000000 0.000000 0.451546 0.000000 0.548454 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF KAGGTCA DREME-54 # Word RC Word Pos Neg P-value E-value # BEST KAGGTCA TGACCTM 768 568 2.0e-008 7.7e-004 # TAGGTCA TGACCTA 384 263 1.0e-006 4.0e-002 # GAGGTCA TGACCTC 386 306 1.3e-003 4.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 775 E= 7.7e-004 0.000000 0.000000 0.501935 0.498065 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGAGRGA DREME-55 # Word RC Word Pos Neg P-value E-value # BEST GAGAGRGA TCYCTCTC 596 423 2.9e-008 1.1e-003 # GAGAGGGA TCCCTCTC 190 118 2.4e-005 9.1e-001 # GAGAGAGA TCTCTCTC 412 308 5.7e-005 2.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 633 E= 1.1e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.701422 0.000000 0.298578 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTAGCTG DREME-56 # Word RC Word Pos Neg P-value E-value # BEST AGTAGCTG CAGCTACT 317 196 4.8e-008 1.8e-003 # AGTAGCTG CAGCTACT 317 196 4.8e-008 1.8e-003 letter-probability matrix: alength= 4 w= 8 nsites= 318 E= 1.8e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF STGGGGA DREME-57 # Word RC Word Pos Neg P-value E-value # BEST STGGGGA TCCCCAS 1493 1234 2.7e-007 1.0e-002 # CTGGGGA TCCCCAG 946 788 7.1e-005 2.7e+000 # GTGGGGA TCCCCAC 559 456 6.4e-004 2.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1522 E= 1.0e-002 0.000000 0.628121 0.371879 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGTSATC DREME-58 # Word RC Word Pos Neg P-value E-value # BEST CGTSATC GATSACG 194 109 5.8e-007 2.2e-002 # CGTCATC GATGACG 113 63 1.0e-004 3.9e+000 # CGTGATC GATCACG 81 46 1.2e-003 4.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 194 E= 2.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.582474 0.417526 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TCAAGCGA DREME-59 # Word RC Word Pos Neg P-value E-value # BEST TCAAGCGA TCGCTTGA 98 41 7.2e-007 2.8e-002 # TCAAGCGA TCGCTTGA 98 41 7.2e-007 2.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 2.8e-002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CASAAAGC DREME-60 # Word RC Word Pos Neg P-value E-value # BEST CASAAAGC GCTTTSTG 526 382 8.9e-007 3.4e-002 # CACAAAGC GCTTTGTG 231 157 9.8e-005 3.8e+000 # CAGAAAGC GCTTTCTG 296 227 1.4e-003 5.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 529 E= 3.4e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.440454 0.559546 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATTACWG DREME-61 # Word RC Word Pos Neg P-value E-value # BEST ATTACWG CWGTAAT 615 457 6.9e-007 2.6e-002 # ATTACAG CTGTAAT 322 229 4.1e-005 1.6e+000 # ATTACTG CAGTAAT 296 229 1.9e-003 7.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 618 E= 2.6e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.521036 0.000000 0.000000 0.478964 0.000000 0.000000 1.000000 0.000000 MOTIF TTAA DREME-62 # Word RC Word Pos Neg P-value E-value # BEST TTAA TTAA 1399 1161 1.0e-006 4.0e-002 # TTAA TTAA 1399 1161 1.0e-006 4.0e-002 letter-probability matrix: alength= 4 w= 4 nsites= 1442 E= 4.0e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 13511.52 seconds