# DREME 4.12.0 # command: dreme -v 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/Retina/mm10_ret_noTSS_filtered_500bp_labeled.MemeChipResults/dreme_out -png -dna -p /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/Retina/mm10_ret_noTSS_filtered_500bp_labeled.MemeChipResults/seqs-centered -n /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/Retina/mm10_ret_noTSS_filtered_500bp_labeled.MemeChipResults/seqs-shuffled # positives: 37056 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/Retina/mm10_ret_noTSS_filtered_500bp_labeled.MemeChipResults/seqs-centered (Wed Oct 06 08:30:28 EDT 2021) # negatives: 37056 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/Retina/mm10_ret_noTSS_filtered_500bp_labeled.MemeChipResults/seqs-shuffled (Wed Oct 06 08:30:28 EDT 2021) # host: compute-0-40.local # when: Wed Oct 06 09:27:46 EDT 2021 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.245 C 0.256 G 0.254 T 0.244 MOTIF TAATKR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAATKR YMATTA 8057 3788 6.7e-408 3.1e-403 # TAATGA TCATTA 3071 1228 3.4e-190 1.6e-185 # TAATTA TAATTA 1641 399 3.8e-183 1.8e-178 # TAATTG CAATTA 2605 1155 1.9e-133 8.8e-129 # TAATGG CCATTA 1872 1206 5.2e-035 2.4e-030 letter-probability matrix: alength= 4 w= 6 nsites= 9555 E= 3.1e-403 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.539403 0.460597 0.512821 0.000000 0.487179 0.000000 MOTIF AGRKGGCR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGCR YGCCMYCT 4390 1504 1.8e-349 8.4e-345 # AGGTGGCG CGCCACCT 409 48 3.7e-073 1.7e-068 # AGGGGGCG CGCCCCCT 424 71 6.3e-063 2.9e-058 # AGAGGGCG CGCCCTCT 445 81 1.5e-062 6.7e-058 # AGGTGGCA TGCCACCT 753 262 1.3e-056 6.0e-052 # AGAGGGCA TGCCCTCT 943 421 2.0e-047 9.2e-043 # AGATGGCA TGCCATCT 638 230 7.1e-046 3.3e-041 # AGATGGCG CGCCATCT 243 41 1.6e-036 7.4e-032 # AGGGGGCA TGCCCCCT 635 376 1.1e-016 4.9e-012 letter-probability matrix: alength= 4 w= 8 nsites= 4521 E= 8.4e-345 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.506525 0.000000 0.493475 0.000000 0.000000 0.000000 0.546118 0.453882 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.661579 0.000000 0.338421 0.000000 MOTIF ACAVWG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACAVWG CWBTGT 17874 13339 2.0e-250 9.1e-246 # ACAAAG CTTTGT 4095 2366 1.2e-113 5.4e-109 # ACACAG CTGTGT 4830 3098 5.2e-095 2.4e-090 # ACAATG CATTGT 3006 1967 4.3e-053 2.0e-048 # ACAGAG CTCTGT 4831 3597 1.3e-046 5.8e-042 # ACAGTG CACTGT 3931 2916 2.8e-038 1.3e-033 # ACACTG CAGTGT 3671 2699 1.6e-037 7.3e-033 letter-probability matrix: alength= 4 w= 6 nsites= 24230 E= 9.1e-246 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.312835 0.336855 0.350310 0.000000 0.582460 0.000000 0.000000 0.417540 0.000000 0.000000 1.000000 0.000000 MOTIF RGRAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST RGRAA TTYCY 24026 20031 6.3e-197 2.8e-192 # GGAAA TTTCC 8849 6330 5.6e-117 2.5e-112 # GGGAA TTCCC 9724 7298 4.2e-100 1.9e-095 # AGGAA TTCCT 10562 8439 1.1e-071 4.8e-067 # AGAAA TTTCT 9479 7711 9.7e-054 4.4e-049 letter-probability matrix: alength= 4 w= 5 nsites= 37812 E= 2.8e-192 0.560748 0.000000 0.439252 0.000000 0.000000 0.000000 1.000000 0.000000 0.468423 0.000000 0.531577 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAGM DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ACAGM KCTGT 16065 12924 5.5e-124 2.4e-119 # ACAGC GCTGT 11418 8885 4.5e-097 2.0e-092 # ACAGA TCTGT 6507 5283 5.0e-035 2.2e-030 letter-probability matrix: alength= 4 w= 5 nsites= 20643 E= 2.4e-119 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.341665 0.658335 0.000000 0.000000 MOTIF GGGHGGGR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GGGHGGGR YCCCDCCC 2462 1133 5.3e-117 2.3e-112 # GGGAGGGG CCCCTCCC 953 399 8.3e-054 3.5e-049 # GGGTGGGG CCCCACCC 621 265 2.4e-034 1.0e-029 # GGGCGGGG CCCCGCCC 333 93 3.1e-033 1.3e-028 # GGGAGGGA TCCCTCCC 506 239 2.0e-023 8.7e-019 # GGGTGGGA TCCCACCC 234 142 1.1e-006 4.9e-002 # GGGCGGGA TCCCGCCC 77 46 3.3e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 2777 E= 2.3e-112 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.540871 0.155203 0.000000 0.303925 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.305726 0.000000 0.694274 0.000000 MOTIF DTAAW DREME-7 # Word RC Word Pos Neg P-value E-value # BEST DTAAW WTTAH 14735 12236 1.8e-081 7.6e-077 # TTAAT ATTAA 3210 2243 1.4e-042 6.1e-038 # ATAAA TTTAT 4517 3608 6.0e-027 2.5e-022 # TTAAA TTTAA 3957 3193 1.0e-021 4.4e-017 # ATAAT ATTAT 2882 2275 1.0e-018 4.2e-014 # GTAAT ATTAC 2199 1812 1.8e-010 7.6e-006 # GTAAA TTTAC 3389 3114 1.9e-004 7.9e+000 letter-probability matrix: alength= 4 w= 5 nsites= 19778 E= 7.6e-077 0.384215 0.000000 0.293053 0.322732 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.599403 0.000000 0.000000 0.400597 MOTIF CACGB DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CACGB VCGTG 7086 5250 1.0e-073 4.2e-069 # CACGG CCGTG 3121 2134 9.4e-046 3.8e-041 # CACGT ACGTG 1845 1234 9.8e-030 4.0e-025 # CACGC GCGTG 2724 2241 6.9e-013 2.8e-008 letter-probability matrix: alength= 4 w= 5 nsites= 8109 E= 4.2e-069 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.359847 0.404982 0.235171 MOTIF ACAAWAGV DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ACAAWAGV BCTWTTGT 1279 645 1.4e-049 5.6e-045 # ACAAAAGC GCTTTTGT 301 134 3.2e-016 1.3e-011 # ACAATAGC GCTATTGT 177 64 8.9e-014 3.5e-009 # ACAAAAGG CCTTTTGT 240 124 5.5e-010 2.2e-005 # ACAATAGA TCTATTGT 186 91 5.5e-009 2.2e-004 # ACAAAAGA TCTTTTGT 264 150 1.1e-008 4.2e-004 # ACAATAGG CCTATTGT 135 87 7.6e-004 3.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1310 E= 5.6e-045 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.618321 0.000000 0.000000 0.381679 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.345802 0.366412 0.287786 0.000000 MOTIF CWGCCTS DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CWGCCTS SAGGCWG 6380 5001 3.6e-045 1.4e-040 # CAGCCTG CAGGCTG 1837 1338 7.1e-020 2.8e-015 # CTGCCTC GAGGCAG 1728 1289 1.7e-016 6.9e-012 # CTGCCTG CAGGCAG 2181 1700 1.1e-015 4.5e-011 # CAGCCTC GAGGCTG 1327 1097 1.1e-006 4.4e-002 letter-probability matrix: alength= 4 w= 7 nsites= 7210 E= 1.4e-040 0.000000 1.000000 0.000000 0.000000 0.443551 0.000000 0.000000 0.556449 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.431900 0.568100 0.000000 MOTIF CAKCTGCY DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CAKCTGCY RGCAGMTG 1755 1089 1.2e-037 4.6e-033 # CATCTGCT AGCAGATG 489 251 5.1e-019 2.0e-014 # CAGCTGCT AGCAGCTG 622 384 2.0e-014 8.1e-010 # CATCTGCC GGCAGATG 289 175 6.2e-008 2.4e-003 # CAGCTGCC GGCAGCTG 443 334 4.8e-005 1.9e+000 letter-probability matrix: alength= 4 w= 8 nsites= 1803 E= 4.6e-033 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.565169 0.434831 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.394897 0.000000 0.605103 MOTIF CACACACA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CACACACA TGTGTGTG 538 203 1.9e-036 7.5e-032 # CACACACA TGTGTGTG 538 203 1.9e-036 7.5e-032 letter-probability matrix: alength= 4 w= 8 nsites= 974 E= 7.5e-032 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAKGTCAB DREME-13 # Word RC Word Pos Neg P-value E-value # BEST GAKGTCAB VTGACMTC 1251 726 1.5e-033 5.9e-029 # GAGGTCAG CTGACCTC 380 218 1.5e-011 5.8e-007 # GATGTCAC GTGACATC 172 71 3.5e-011 1.4e-006 # GAGGTCAC GTGACCTC 188 109 2.6e-006 1.0e-001 # GAGGTCAT ATGACCTC 162 95 1.7e-005 6.7e-001 # GATGTCAT ATGACATC 142 81 2.6e-005 1.0e+000 # GATGTCAG CTGACATC 228 159 2.6e-004 1.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1278 E= 5.9e-029 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.575900 0.424100 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.283255 0.478091 0.238654 MOTIF CWGKGA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CWGKGA TCMCWG 9020 7723 2.4e-030 9.4e-026 # CAGGGA TCCCTG 3126 2540 2.9e-016 1.1e-011 # CTGGGA TCCCAG 2766 2307 1.3e-011 5.2e-007 # CTGTGA TCACAG 1472 1192 1.8e-008 7.1e-004 # CAGTGA TCACTG 2743 2422 1.9e-006 7.6e-002 letter-probability matrix: alength= 4 w= 6 nsites= 10333 E= 9.4e-026 0.000000 1.000000 0.000000 0.000000 0.581341 0.000000 0.000000 0.418659 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.585019 0.414981 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACTAGR DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CCACTAGR YCTAGTGG 542 249 2.3e-026 8.9e-022 # CCACTAGG CCTAGTGG 300 138 3.0e-015 1.2e-010 # CCACTAGA TCTAGTGG 242 111 1.1e-012 4.5e-008 letter-probability matrix: alength= 4 w= 8 nsites= 546 E= 8.9e-022 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.448718 0.000000 0.551282 0.000000 MOTIF ATRGYAAC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST ATRGYAAC GTTRCYAT 487 215 1.1e-025 4.4e-021 # ATGGCAAC GTTGCCAT 236 91 2.4e-016 9.3e-012 # ATAGCAAC GTTGCTAT 134 54 2.4e-009 9.2e-005 # ATAGTAAC GTTACTAT 59 27 3.6e-004 1.4e+001 # ATGGTAAC GTTACCAT 80 43 5.4e-004 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 497 E= 4.4e-021 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.384306 0.000000 0.615694 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.728370 0.000000 0.271630 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATTA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST ATTA TAAT 3894 3090 2.6e-024 1.0e-019 # ATTA TAAT 3894 3090 2.6e-024 1.0e-019 letter-probability matrix: alength= 4 w= 4 nsites= 4155 E= 1.0e-019 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCDCCTCC DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CCDCCTCC GGAGGHGG 925 544 3.8e-024 1.4e-019 # CCTCCTCC GGAGGAGG 503 293 3.4e-014 1.3e-009 # CCGCCTCC GGAGGCGG 161 73 4.1e-009 1.6e-004 # CCACCTCC GGAGGTGG 290 196 1.1e-005 4.2e-001 letter-probability matrix: alength= 4 w= 8 nsites= 986 E= 1.4e-019 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.291075 0.000000 0.178499 0.530426 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RAWCAATA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST RAWCAATA TATTGWTY 360 151 3.7e-021 1.4e-016 # AATCAATA TATTGATT 148 44 1.1e-014 4.2e-010 # GATCAATA TATTGATC 107 50 3.1e-006 1.2e-001 # GAACAATA TATTGTTC 61 31 1.2e-003 4.4e+001 # AAACAATA TATTGTTT 48 26 7.0e-003 2.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 363 E= 1.4e-016 0.539945 0.000000 0.460055 0.000000 1.000000 0.000000 0.000000 0.000000 0.297521 0.000000 0.000000 0.702479 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGCAGRG DREME-20 # Word RC Word Pos Neg P-value E-value # BEST CAGCAGRG CYCTGCTG 1025 692 2.1e-016 8.2e-012 # CAGCAGGG CCCTGCTG 437 273 3.3e-010 1.3e-005 # CAGCAGAG CTCTGCTG 592 420 2.9e-008 1.1e-003 letter-probability matrix: alength= 4 w= 8 nsites= 1041 E= 8.2e-012 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.575408 0.000000 0.424592 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCASATGG DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CCASATGG CCATSTGG 614 368 1.3e-015 4.9e-011 # CCAGATGG CCATCTGG 356 193 1.4e-012 5.3e-008 # CCACATGG CCATGTGG 262 176 2.2e-005 8.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 624 E= 4.9e-011 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.419872 0.580128 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GTGACAK DREME-22 # Word RC Word Pos Neg P-value E-value # BEST GTGACAK MTGTCAC 628 387 1.3e-014 4.9e-010 # GTGACAG CTGTCAC 341 186 6.0e-012 2.3e-007 # GTGACAT ATGTCAC 288 202 5.6e-005 2.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 639 E= 4.9e-010 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.547731 0.452269 MOTIF CASMG DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CASMG CKSTG 16115 15103 2.7e-014 1.0e-009 # CAGAG CTCTG 10993 10243 5.8e-010 2.2e-005 # CACCG CGGTG 2156 1897 1.5e-005 5.9e-001 # CACAG CTGTG 3113 2819 3.6e-005 1.4e+000 # CAGCG CGCTG 2745 2541 1.9e-003 7.2e+001 letter-probability matrix: alength= 4 w= 5 nsites= 21509 E= 1.0e-009 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.255614 0.744386 0.000000 0.762425 0.237575 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CTCCWYCC DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CTCCWYCC GGRWGGAG 983 690 2.3e-013 8.5e-009 # CTCCACCC GGGTGGAG 354 248 8.3e-006 3.1e-001 # CTCCTCCC GGGAGGAG 318 221 1.6e-005 5.9e-001 # CTCCATCC GGATGGAG 198 138 6.1e-004 2.3e+001 # CTCCTTCC GGAAGGAG 126 85 2.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1004 E= 8.5e-009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.550797 0.000000 0.000000 0.449203 0.000000 0.677291 0.000000 0.322709 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RAATGAA DREME-25 # Word RC Word Pos Neg P-value E-value # BEST RAATGAA TTCATTY 877 604 4.1e-013 1.5e-008 # GAATGAA TTCATTC 463 317 8.3e-008 3.1e-003 # AAATGAA TTCATTT 430 295 2.7e-007 9.9e-003 letter-probability matrix: alength= 4 w= 7 nsites= 900 E= 1.5e-008 0.476667 0.000000 0.523333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAAMAAA DREME-26 # Word RC Word Pos Neg P-value E-value # BEST AAAAMAAA TTTKTTTT 236 113 1.9e-011 7.0e-007 # AAAAAAAA TTTTTTTT 149 61 5.3e-010 2.0e-005 # AAAACAAA TTTGTTTT 92 53 7.5e-004 2.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 262 E= 7.0e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.656489 0.343511 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACATTC DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CACATTC GAATGTG 532 347 1.9e-010 6.9e-006 # CACATTC GAATGTG 532 347 1.9e-010 6.9e-006 letter-probability matrix: alength= 4 w= 7 nsites= 536 E= 6.9e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCCGGGR DREME-28 # Word RC Word Pos Neg P-value E-value # BEST CCCGGGR YCCCGGG 320 189 3.1e-009 1.1e-004 # CCCGGGA TCCCGGG 167 86 1.9e-007 7.1e-003 # CCCGGGG CCCCGGG 210 128 4.6e-006 1.7e-001 letter-probability matrix: alength= 4 w= 7 nsites= 323 E= 1.1e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.424149 0.000000 0.575851 0.000000 MOTIF TAYATACA DREME-29 # Word RC Word Pos Neg P-value E-value # BEST TAYATACA TGTATRTA 116 44 5.5e-009 2.0e-004 # TACATACA TGTATGTA 80 28 2.8e-007 1.0e-002 # TATATACA TGTATATA 42 17 7.7e-004 2.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 136 E= 2.0e-004 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.698529 0.000000 0.301471 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGCGTTM DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CTGCGTTM KAACGCAG 74 20 9.1e-009 3.4e-004 # CTGCGTTC GAACGCAG 46 10 6.2e-007 2.3e-002 # CTGCGTTA TAACGCAG 28 10 2.5e-003 9.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 3.4e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.378378 0.621622 0.000000 0.000000 MOTIF TGACGTCA DREME-31 # Word RC Word Pos Neg P-value E-value # BEST TGACGTCA TGACGTCA 42 5 1.2e-008 4.5e-004 # TGACGTCA TGACGTCA 42 5 1.2e-008 4.5e-004 letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 4.5e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGCGCGCG DREME-32 # Word RC Word Pos Neg P-value E-value # BEST CGCGCGCG CGCGCGCG 35 3 3.3e-008 1.2e-003 # CGCGCGCG CGCGCGCG 35 3 3.3e-008 1.2e-003 letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCACACAY DREME-33 # Word RC Word Pos Neg P-value E-value # BEST GCACACAY RTGTGTGC 323 203 8.5e-008 3.2e-003 # GCACACAT ATGTGTGC 201 130 5.4e-005 2.0e+000 # GCACACAC GTGTGTGC 123 73 2.1e-004 8.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 328 E= 3.2e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.625000 MOTIF CGGAGCC DREME-34 # Word RC Word Pos Neg P-value E-value # BEST CGGAGCC GGCTCCG 262 156 1.1e-007 4.2e-003 # CGGAGCC GGCTCCG 262 156 1.1e-007 4.2e-003 letter-probability matrix: alength= 4 w= 7 nsites= 263 E= 4.2e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GATCGATR DREME-35 # Word RC Word Pos Neg P-value E-value # BEST GATCGATR YATCGATC 59 15 1.3e-007 4.7e-003 # GATCGATA TATCGATC 24 4 9.0e-005 3.3e+000 # GATCGATG CATCGATC 35 11 2.7e-004 9.9e+000 letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 4.7e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.406780 0.000000 0.593220 0.000000 MOTIF CTGGRGA DREME-36 # Word RC Word Pos Neg P-value E-value # BEST CTGGRGA TCYCCAG 1620 1350 2.3e-007 8.6e-003 # CTGGAGA TCTCCAG 954 766 2.5e-006 9.2e-002 # CTGGGGA TCCCCAG 683 595 7.0e-003 2.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1660 E= 8.6e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.582530 0.000000 0.417470 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACCAGG DREME-37 # Word RC Word Pos Neg P-value E-value # BEST CCACCAGG CCTGGTGG 332 215 2.9e-007 1.1e-002 # CCACCAGG CCTGGTGG 332 215 2.9e-007 1.1e-002 letter-probability matrix: alength= 4 w= 8 nsites= 332 E= 1.1e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GTAGGTCA DREME-38 # Word RC Word Pos Neg P-value E-value # BEST GTAGGTCA TGACCTAC 127 62 1.3e-006 4.7e-002 # GTAGGTCA TGACCTAC 127 62 1.3e-006 4.7e-002 letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 4.7e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 11692.21 seconds