Invoking:
  getsize /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.125454
Invoking:
  fasta-most -min 50 < /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.095273
Invoking:
  fasta-center -dna -len 100 < /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.fa 1> /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.154809
Invoking:
  fasta-shuffle-letters /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-centered /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.049469
Invoking:
  fasta-subsample /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-centered 600 -rest /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-discarded -seed 1 1> /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.134648
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.fa /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/background
Finished invoke:
  name: bg  status: 0  time: 0.043042
Invoking:
  meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 3557.44421
Invoking:
  dreme -v 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/dreme_out -png -dna -p /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-centered -n /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 1255.276193
Invoking:
  centrimo -seqlen 501 -verbosity 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/centrimo_out -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/background /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.fa /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/meme_out/meme.xml /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/dreme_out/dreme.xml /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MotifData/motif_databases/CIS-BP_2.00/Homo_sapiens.meme
Finished invoke:
  name: centrimo  status: 0  time: 179.273738
Invoking:
  tomtom -verbosity 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/background /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/meme_out/meme.xml /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MotifData/motif_databases/CIS-BP_2.00/Homo_sapiens.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 129.771729
Invoking:
  tomtom -verbosity 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/dreme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/background /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/dreme_out/dreme.xml /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MotifData/motif_databases/CIS-BP_2.00/Homo_sapiens.meme
Finished invoke:
  name: dreme_tomtom  status: 0  time: 9.072147
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/combined.meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/combined.meme 1> /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 243.248682
Writing output
Invoking:
  meme-chip_html_to_tsv /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/meme-chip.html /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/M1SnareSeq/BICCN_huMOp_SNARE-Seq2_PVALB_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.99477
Done