******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:107879603-107879703 1.0000 100 chr17:51204541-51204641 1.0000 100 chr6:117574123-117574223 1.0000 100 chr14:99894023-99894123 1.0000 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chr6:94224978-94225078 1.0000 100 chr13:5287527-5287627 1.0000 100 chr5:66876825-66876925 1.0000 100 chr5:72041325-72041425 1.0000 100 chr13:110151730-11015183 1.0000 100 chr9:29358491-29358591 1.0000 100 chr10:41830833-41830933 1.0000 100 chr5:6786926-6787026 1.0000 100 chr17:73263006-73263106 1.0000 100 chr4:104686327-104686427 1.0000 100 chr17:69201082-69201182 1.0000 100 chr12:54489604-54489704 1.0000 100 chr4:108914335-108914435 1.0000 100 chr1:169459285-169459385 1.0000 100 chr17:75087276-75087376 1.0000 100 chr5:91843789-91843889 1.0000 100 chr1:143903880-143903980 1.0000 100 chr1:168188247-168188347 1.0000 100 chr13:57347725-57347825 1.0000 100 chr16:14056611-14056711 1.0000 100 chr15:81128088-81128188 1.0000 100 chr1:142891796-142891896 1.0000 100 chr18:75194721-75194821 1.0000 100 chr11:35451529-35451629 1.0000 100 chr4:85228480-85228580 1.0000 100 chr16:52392962-52393062 1.0000 100 chr7:75008447-75008547 1.0000 100 chr5:57785308-57785408 1.0000 100 chr18:34169135-34169235 1.0000 100 chr12:102064880-10206498 1.0000 100 chr5:47014289-47014389 1.0000 100 chr18:29993731-29993831 1.0000 100 chr18:63769241-63769341 1.0000 100 chr5:128482979-128483079 1.0000 100 chr4:104455404-104455504 1.0000 100 chr12:11757012-11757112 1.0000 100 chr1:164218566-164218666 1.0000 100 chr18:38087186-38087286 1.0000 100 chr15:68810392-68810492 1.0000 100 chr4:57489111-57489211 1.0000 100 chr7:115473819-115473919 1.0000 100 chr4:153874121-153874221 1.0000 100 chr9:32033783-32033883 1.0000 100 chr11:119774811-11977491 1.0000 100 chrX:99216454-99216554 1.0000 100 chr12:29083814-29083914 1.0000 100 chr19:36677475-36677575 1.0000 100 chr8:84456815-84456915 1.0000 100 chr4:149798019-149798119 1.0000 100 chr1:35495891-35495991 1.0000 100 chr17:5285888-5285988 1.0000 100 chr9:70622755-70622855 1.0000 100 chr13:25982146-25982246 1.0000 100 chr13:47319552-47319652 1.0000 100 chr18:60891140-60891240 1.0000 100 chr17:86582274-86582374 1.0000 100 chr4:77558781-77558881 1.0000 100 chr15:58588993-58589093 1.0000 100 chr1:116147779-116147879 1.0000 100 chr19:24054787-24054887 1.0000 100 chr15:30506453-30506553 1.0000 100 chr13:29014500-29014600 1.0000 100 chr13:52875577-52875677 1.0000 100 chr10:117094808-11709490 1.0000 100 chr15:31175843-31175943 1.0000 100 chr1:143918893-143918993 1.0000 100 chr13:53777976-53778076 1.0000 100 chr6:8627315-8627415 1.0000 100 chr2:92278599-92278699 1.0000 100 chr12:44857989-44858089 1.0000 100 chr6:18594576-18594676 1.0000 100 chr11:86920337-86920437 1.0000 100 chr5:64389237-64389337 1.0000 100 chr5:51477070-51477170 1.0000 100 chr18:68493806-68493906 1.0000 100 chr17:12187694-12187794 1.0000 100 chr6:103613113-103613213 1.0000 100 chr15:41193181-41193281 1.0000 100 chr6:108324937-108325037 1.0000 100 chr16:29262917-29263017 1.0000 100 chr11:113167469-11316756 1.0000 100 chr11:36381589-36381689 1.0000 100 chr11:84642119-84642219 1.0000 100 chr3:55280946-55281046 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.258 C 0.242 G 0.242 T 0.258 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChip4ResultsNoNeg/background): A 0.273 C 0.227 G 0.227 T 0.273 ******************************************************************************** ******************************************************************************** MOTIF CCASHAGAGGGCRS MEME-1 width = 14 sites = 58 llr = 635 E-value = 1.1e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCASHAGAGGGCRS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:9:27:6::::6: pos.-specific C 79:54122:119:5 probability G 11151282899144 matrix T ::::2:::2::::1 bits 2.1 1.9 * 1.7 * * 1.5 * * *** Relative 1.3 ** * **** Entropy 1.1 *** * ***** (15.8 bits) 0.9 **** * ****** 0.6 **** ** ****** 0.4 **** ********* 0.2 ************** 0.0 -------------- Multilevel CCACCAGAGGGCAC consensus GAG GT GG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASHAGAGGGCRS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr17:8468671-8468771 + 19 7.39e-09 TCGGAAGAAG CCACCAGAGGGCGC CTCAGGATGC chr2:133020359-133020459 + 69 7.39e-09 ATGACTGCTT CCAGCAGAGGGCGC CCTTACTCAG chr4:125962674-125962774 - 62 7.39e-09 GGCACTGTCA CCACCAGAGGGCGC CCGATGCCCA chr5:47014289-47014389 + 51 1.48e-08 AGACTAGCAT CCAGCAGAGGGCAG CACACTGTGA chr3:107357125-107357225 + 5 1.48e-08 GCGA CCAGCAGAGGGCAG AAAAGACCCG chr15:89623502-89623602 + 62 1.48e-08 CAGATTTCTG CCACCAGAGGGCAG AGGAGACCCA chr12:56404801-56404901 - 51 1.48e-08 AAACTGCTTG CCAGCAGAGGGCAG CACACATCTG chr6:92787211-92787311 + 74 4.49e-08 CCAAAAGCAG CCAGAAGAGGGCGC GCATCGCCTG chr14:106439254-10643935 + 40 6.88e-08 GACTAAGAGA CCACTAGAGGGCAG TCCAAGCACG chr11:56131189-56131289 + 36 9.61e-08 TAAGGAATAA CCACCAGATGGCGC TCTAGACTAG chr2:43902532-43902632 - 38 1.05e-07 TGCCAAACGG CCACCAGATGGCAG CAACGCTTTT chr9:77596244-77596344 + 84 1.35e-07 TAGGCTATCG CCACTAGGGGGCAG GGC chr3:69897831-69897931 - 87 1.35e-07 . CCAGAAGGGGGCAG CATGAGGCTG chr2:126362956-126363056 - 42 2.90e-07 TTGGTCCCGG ACAGCAGAGGGCAG TGTTGAGCCA chr2:117180438-117180538 - 63 3.23e-07 CTAAAGCCAT CCAGCAGGTGGCAC TGCAGCTCCG chr11:35451529-35451629 - 50 3.52e-07 CTCTCTTTGG CCAGCAGGTGGCAG CCTGGAGATG chr5:149335779-149335879 - 79 3.52e-07 GGGAGTGG CCACTAGATGGCGC ATCCGCCCTG chr1:162359171-162359271 + 62 3.81e-07 GCAGACTCCC ccagaagatggcag ccaagagctt chr1:123974600-123974700 + 17 5.39e-07 ACCCTGGTGG CCACAGGGGGGCGC CAGCTACAAC chr7:51270505-51270605 - 18 6.72e-07 GAGAACTGCA ACACTAGAGGGCGC TATGTGATGC chr15:24596185-24596285 + 66 6.72e-07 GTCTGTGCGC ACAGCAGGGGGCAG ACATGCTCTG chr9:23249972-23250072 - 55 1.13e-06 CTGACACTTG CCGCCAGATGGCAG CACGGAGCTC chr15:77257312-77257412 + 55 1.44e-06 GGGAGGGTGA ACAGTAGGGGGCGC GTCTGCTGGG chr19:33226935-33227035 - 50 1.44e-06 TTCCAAACTC CCGCTAGGGGGCAG TACTACTCTT chr4:32027079-32027179 + 3 1.44e-06 GA CCACAAGAGGGCAT GGTAGGACTG chr2:169849035-169849135 - 53 1.62e-06 GTGCATCCAG CCAGCAGAGGGTGC TCACGCGAAA chr1:168188247-168188347 + 13 2.32e-06 ATCTGAGGAT ACAGAGGAGGGCAG ATCTTATTAG chr15:67513696-67513796 - 67 2.56e-06 TGCTTGGACT CCAGAGGGTGGCAC TATTTGGGGA chr12:29187550-29187650 + 17 2.56e-06 CTGTGAGCTC CCAGCAGATGGCAT TCATGCAAAC chr2:106355821-106355921 + 31 2.79e-06 TCTATTTCCA ACACAAGATGGCAC TGGTGTATTT chr4:81564302-81564402 + 25 3.04e-06 CTTTTAGAAG TCAGTAGAGGGCGC TGTTGGCATT chr6:29649755-29649855 - 35 3.28e-06 CCTCTCGCAG TCACAAGAGGGCGG TATGGCTCTT chr1:44741197-44741297 - 59 3.28e-06 TGCCTCTTTG CCAGCAGAGAGCAG TCTTGCACAT chr4:77558781-77558881 - 33 3.66e-06 GAACGTGTGA CCACTAGAGGGTAC TGTGGGACCT chr18:73932862-73932962 + 40 4.10e-06 CTTGCAGACT CGAGCAGATGGCGG TGCTCCAGAG chr18:25658881-25658981 + 33 4.59e-06 CCTCTGGAAA GCACTGGCGGGCGC ACAGGCTGGC chr10:41830833-41830933 + 31 5.10e-06 GCTGCTGTGA GCACTAGGTGGCAC TCTGACTCAA chr2:174598486-174598586 + 44 5.10e-06 TACCCCGAAC CCACACCAGGGCAG GCTGCTTACT chr1:169459285-169459385 - 82 5.55e-06 TCGTG CCTCTAGAGGGCAC TGTTTACTTT chr16:15084716-15084816 - 73 6.01e-06 GCGCCAGGGG CCAGCGCAGCGCGG CGGCGAGCGC chr6:67158707-67158807 - 51 8.59e-06 TAGACATTTG CCACATGGGGGCGC TTGATACCAT chr15:38177331-38177431 + 41 1.02e-05 cagagcaggt acagaaccgggcag agaacagccc chr12:54404503-54404603 - 50 1.02e-05 AGAGGCTTGC CCGGAGCAGGGCAG GAGCTGTCTG chr3:18625440-18625540 + 32 1.10e-05 CTGTGGTTCC CCAGTGCAGCGCGC TGTCGCAGTT chr18:52935095-52935195 - 62 1.40e-05 GCAGCCTCAG GCACTAGGGGGCGT TGAGCTTCAG chr4:136755382-136755482 - 48 1.51e-05 CACGCTCGGC CGAGCCGCGGGCGG CTGGGGCCTG chr4:55651060-55651160 + 29 1.51e-05 GAAGGCCATC CCACCAGTGGCCGC GGCAGGCTGC chr2:30707958-30708058 + 69 2.09e-05 GCGAACCAgg ccggccccgggcgc ggccgccccc chr11:84642119-84642219 + 40 2.40e-05 CATCCTCTCC CCACGACCGCGCGC GTGCGCGCGC chr2:10831241-10831341 + 42 2.99e-05 CAGCAAATCT CCACGGGATGCCGG TTATGAGCCA chr10:40751071-40751171 + 22 4.22e-05 TTTAGCTCTG CCACTCCCGcgcac gcacgcaggc chr1:161170618-161170718 + 33 6.25e-05 CACAAGCGAC GCGGCGGCGGGGAC CGCATACAGG chr16:77644291-77644391 - 75 8.49e-05 GCCCGAGCGA GCACGCGCGCGCGC ACAGGCACAC chr16:73367486-73367586 - 71 9.01e-05 TAGCTTCCAC ACAGAAGCGGCGAC GCGTTCTTGA chrX:21361330-21361430 - 83 9.55e-05 TGTG GCAGCGGCGGCGGC TGTGGCTTCT chr16:21333128-21333228 + 6 1.13e-04 CCCGC CCACGATCGCGCAG CCGCAGTCTG chr6:103613113-103613213 + 65 1.49e-04 tgccacagca gcggcggaggcggc ggtggcagca chr15:82938152-82938252 + 29 3.88e-04 GATTTCCCCA CGGCCGCGTCGCAG GCCCTCCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASHAGAGGGCRS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:8468671-8468771 7.4e-09 18_[+1]_68 chr2:133020359-133020459 7.4e-09 68_[+1]_18 chr4:125962674-125962774 7.4e-09 61_[-1]_25 chr5:47014289-47014389 1.5e-08 50_[+1]_36 chr3:107357125-107357225 1.5e-08 4_[+1]_82 chr15:89623502-89623602 1.5e-08 61_[+1]_25 chr12:56404801-56404901 1.5e-08 50_[-1]_36 chr6:92787211-92787311 4.5e-08 73_[+1]_13 chr14:106439254-10643935 6.9e-08 39_[+1]_47 chr11:56131189-56131289 9.6e-08 35_[+1]_51 chr2:43902532-43902632 1e-07 37_[-1]_49 chr9:77596244-77596344 1.3e-07 83_[+1]_3 chr3:69897831-69897931 1.3e-07 86_[-1] chr2:126362956-126363056 2.9e-07 41_[-1]_45 chr2:117180438-117180538 3.2e-07 62_[-1]_24 chr11:35451529-35451629 3.5e-07 49_[-1]_37 chr5:149335779-149335879 3.5e-07 78_[-1]_8 chr1:162359171-162359271 3.8e-07 61_[+1]_25 chr1:123974600-123974700 5.4e-07 16_[+1]_70 chr7:51270505-51270605 6.7e-07 17_[-1]_69 chr15:24596185-24596285 6.7e-07 65_[+1]_21 chr9:23249972-23250072 1.1e-06 54_[-1]_32 chr15:77257312-77257412 1.4e-06 54_[+1]_32 chr19:33226935-33227035 1.4e-06 49_[-1]_37 chr4:32027079-32027179 1.4e-06 2_[+1]_84 chr2:169849035-169849135 1.6e-06 52_[-1]_34 chr1:168188247-168188347 2.3e-06 12_[+1]_74 chr15:67513696-67513796 2.6e-06 66_[-1]_20 chr12:29187550-29187650 2.6e-06 16_[+1]_70 chr2:106355821-106355921 2.8e-06 30_[+1]_56 chr4:81564302-81564402 3e-06 24_[+1]_62 chr6:29649755-29649855 3.3e-06 34_[-1]_52 chr1:44741197-44741297 3.3e-06 58_[-1]_28 chr4:77558781-77558881 3.7e-06 32_[-1]_54 chr18:73932862-73932962 4.1e-06 39_[+1]_47 chr18:25658881-25658981 4.6e-06 32_[+1]_54 chr10:41830833-41830933 5.1e-06 30_[+1]_56 chr2:174598486-174598586 5.1e-06 43_[+1]_43 chr1:169459285-169459385 5.6e-06 81_[-1]_5 chr16:15084716-15084816 6e-06 72_[-1]_14 chr6:67158707-67158807 8.6e-06 50_[-1]_36 chr15:38177331-38177431 1e-05 40_[+1]_46 chr12:54404503-54404603 1e-05 49_[-1]_37 chr3:18625440-18625540 1.1e-05 31_[+1]_55 chr18:52935095-52935195 1.4e-05 61_[-1]_25 chr4:136755382-136755482 1.5e-05 47_[-1]_39 chr4:55651060-55651160 1.5e-05 28_[+1]_58 chr2:30707958-30708058 2.1e-05 68_[+1]_18 chr11:84642119-84642219 2.4e-05 39_[+1]_47 chr2:10831241-10831341 3e-05 41_[+1]_45 chr10:40751071-40751171 4.2e-05 21_[+1]_65 chr1:161170618-161170718 6.3e-05 32_[+1]_54 chr16:77644291-77644391 8.5e-05 74_[-1]_12 chr16:73367486-73367586 9e-05 70_[-1]_16 chrX:21361330-21361430 9.5e-05 82_[-1]_4 chr16:21333128-21333228 0.00011 5_[+1]_81 chr6:103613113-103613213 0.00015 64_[+1]_22 chr15:82938152-82938252 0.00039 28_[+1]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASHAGAGGGCRS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCASHAGAGGGCRS width=14 seqs=58 chr17:8468671-8468771 ( 19) CCACCAGAGGGCGC 1 chr2:133020359-133020459 ( 69) CCAGCAGAGGGCGC 1 chr4:125962674-125962774 ( 62) CCACCAGAGGGCGC 1 chr5:47014289-47014389 ( 51) CCAGCAGAGGGCAG 1 chr3:107357125-107357225 ( 5) CCAGCAGAGGGCAG 1 chr15:89623502-89623602 ( 62) CCACCAGAGGGCAG 1 chr12:56404801-56404901 ( 51) CCAGCAGAGGGCAG 1 chr6:92787211-92787311 ( 74) CCAGAAGAGGGCGC 1 chr14:106439254-10643935 ( 40) CCACTAGAGGGCAG 1 chr11:56131189-56131289 ( 36) CCACCAGATGGCGC 1 chr2:43902532-43902632 ( 38) CCACCAGATGGCAG 1 chr9:77596244-77596344 ( 84) CCACTAGGGGGCAG 1 chr3:69897831-69897931 ( 87) CCAGAAGGGGGCAG 1 chr2:126362956-126363056 ( 42) ACAGCAGAGGGCAG 1 chr2:117180438-117180538 ( 63) CCAGCAGGTGGCAC 1 chr11:35451529-35451629 ( 50) CCAGCAGGTGGCAG 1 chr5:149335779-149335879 ( 79) CCACTAGATGGCGC 1 chr1:162359171-162359271 ( 62) CCAGAAGATGGCAG 1 chr1:123974600-123974700 ( 17) CCACAGGGGGGCGC 1 chr7:51270505-51270605 ( 18) ACACTAGAGGGCGC 1 chr15:24596185-24596285 ( 66) ACAGCAGGGGGCAG 1 chr9:23249972-23250072 ( 55) CCGCCAGATGGCAG 1 chr15:77257312-77257412 ( 55) ACAGTAGGGGGCGC 1 chr19:33226935-33227035 ( 50) CCGCTAGGGGGCAG 1 chr4:32027079-32027179 ( 3) CCACAAGAGGGCAT 1 chr2:169849035-169849135 ( 53) CCAGCAGAGGGTGC 1 chr1:168188247-168188347 ( 13) ACAGAGGAGGGCAG 1 chr15:67513696-67513796 ( 67) CCAGAGGGTGGCAC 1 chr12:29187550-29187650 ( 17) CCAGCAGATGGCAT 1 chr2:106355821-106355921 ( 31) ACACAAGATGGCAC 1 chr4:81564302-81564402 ( 25) TCAGTAGAGGGCGC 1 chr6:29649755-29649855 ( 35) TCACAAGAGGGCGG 1 chr1:44741197-44741297 ( 59) CCAGCAGAGAGCAG 1 chr4:77558781-77558881 ( 33) CCACTAGAGGGTAC 1 chr18:73932862-73932962 ( 40) CGAGCAGATGGCGG 1 chr18:25658881-25658981 ( 33) GCACTGGCGGGCGC 1 chr10:41830833-41830933 ( 31) GCACTAGGTGGCAC 1 chr2:174598486-174598586 ( 44) CCACACCAGGGCAG 1 chr1:169459285-169459385 ( 82) CCTCTAGAGGGCAC 1 chr16:15084716-15084816 ( 73) CCAGCGCAGCGCGG 1 chr6:67158707-67158807 ( 51) CCACATGGGGGCGC 1 chr15:38177331-38177431 ( 41) ACAGAACCGGGCAG 1 chr12:54404503-54404603 ( 50) CCGGAGCAGGGCAG 1 chr3:18625440-18625540 ( 32) CCAGTGCAGCGCGC 1 chr18:52935095-52935195 ( 62) GCACTAGGGGGCGT 1 chr4:136755382-136755482 ( 48) CGAGCCGCGGGCGG 1 chr4:55651060-55651160 ( 29) CCACCAGTGGCCGC 1 chr2:30707958-30708058 ( 69) CCGGCCCCGGGCGC 1 chr11:84642119-84642219 ( 40) CCACGACCGCGCGC 1 chr2:10831241-10831341 ( 42) CCACGGGATGCCGG 1 chr10:40751071-40751171 ( 22) CCACTCCCGCGCAC 1 chr1:161170618-161170718 ( 33) GCGGCGGCGGGGAC 1 chr16:77644291-77644391 ( 75) GCACGCGCGCGCGC 1 chr16:73367486-73367586 ( 71) ACAGAAGCGGCGAC 1 chrX:21361330-21361430 ( 83) GCAGCGGCGGCGGC 1 chr16:21333128-21333228 ( 6) CCACGATCGCGCAG 1 chr6:103613113-103613213 ( 65) GCGGCGGAGGCGGC 1 chr15:82938152-82938252 ( 29) CGGCCGCGTCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASHAGAGGGCRS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 11.0623 E= 1.1e-028 -99 164 -91 -299 -1250 206 -213 -1250 166 -1250 -91 -398 -1250 114 114 -1250 -18 98 -172 -18 133 -139 -13 -398 -1250 -55 187 -398 106 -26 -2 -398 -1250 -1250 174 -18 -398 -91 193 -1250 -1250 -139 201 -1250 -1250 198 -172 -299 101 -1250 98 -1250 -1250 114 98 -240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASHAGAGGGCRS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 58 E= 1.1e-028 0.137931 0.706897 0.120690 0.034483 0.000000 0.948276 0.051724 0.000000 0.862069 0.000000 0.120690 0.017241 0.000000 0.500000 0.500000 0.000000 0.241379 0.448276 0.068966 0.241379 0.689655 0.086207 0.206897 0.017241 0.000000 0.155172 0.827586 0.017241 0.568966 0.189655 0.224138 0.017241 0.000000 0.000000 0.758621 0.241379 0.017241 0.120690 0.862069 0.000000 0.000000 0.086207 0.913793 0.000000 0.000000 0.896552 0.068966 0.034483 0.551724 0.000000 0.448276 0.000000 0.000000 0.500000 0.448276 0.051724 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASHAGAGGGCRS MEME-1 regular expression -------------------------------------------------------------------------------- CCA[CG][CAT][AG]G[AG][GT]GGC[AG][CG] -------------------------------------------------------------------------------- Time 514.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GGSDSGGRGRGGBDGKSDGSR MEME-2 width = 21 sites = 73 llr = 754 E-value = 2.1e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSDSGGRGRGGBDGKSDGSR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2124:31513:214:1:3:14 pos.-specific C :251412:12:13:2142:31 probability G 8533667473a7436553865 matrix T :2:21::1:2::2213:22:: bits 2.1 1.9 * 1.7 * 1.5 * Relative 1.3 * * * Entropy 1.1 * * * * * (14.9 bits) 0.9 * * * * ** * ** 0.6 * * *** * ** * * *** 0.4 *** ***** ** *** *** 0.2 *** ************* *** 0.0 --------------------- Multilevel GGCAGGGAGAGGGAGGGAGGG consensus ACGGCA G G CGCTCG CA sequence AT TT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSDSGGRGRGGBDGKSDGSR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr3:107357125-107357225 + 67 6.26e-11 CCTAGCTTCT GGCGGGGAGGGGGGCGGGGGG AGGGGTGTGG chr19:56423609-56423709 - 30 9.96e-10 CACAGCCCTT GGAAGGGAGGGGTGGGGGGGA CAGCTCGGCC chr4:46891368-46891468 + 52 3.08e-09 ACAGTACAGG AGCAGAGAGAGGGAGGGAGGG AGAAATCCCA chr10:40751071-40751171 - 71 1.80e-08 CAGCCCAAA GCCAGGGAGAGGTGGTGTGCG TGCGTGCCTG chr9:67632439-67632539 + 79 2.57e-08 ACGTGCGCAG GCCAGGGAGAGGCTGTGCGCG C chr2:174598486-174598586 - 70 5.98e-08 GTAGCAGAGG GACACGGGGTGGGAGTGGGGG TTAGTAAGCA chr2:146745724-146745824 + 23 8.24e-08 GTGGCCTTGC GGGAGGGAGGAGCAGGGAGGG GAAGAGGAGG chr12:12221141-12221241 - 37 1.12e-07 GAGTCAGAAT GGAGGGAGGAGGGAGTCAGGA TGGAGGGGGA chr6:82863459-82863559 - 21 1.31e-07 GGGCTCCTGG GGCAGGCAGAGGTTCTGGGGA GCTCTGTCTG chr5:88958831-88958931 + 70 1.31e-07 ACGCTGAGCA ATAGGGGAGAGGGAGGCTGGG AAGAGACAGG chr13:111725271-11172537 - 75 1.76e-07 CAATG GGCTGAGGCGGGCGGGCCGCG GAGGCGGAGC chr18:56756251-56756351 - 43 2.04e-07 ACTACAGGGT GGCTGGCAGGGAGACGGAGCA GCCAGACGGG chr2:21141621-21141721 + 30 2.71e-07 TGCAACGAAG GGAGGAGAGGGGAGGGGCGCG AGCTAAGGGA chr13:29014500-29014600 - 66 3.12e-07 TAACTGAGGA GTGCGGGCGGGGGGGGGGGGG GTTACGCCAG chr9:122629082-122629182 + 69 4.70e-07 TCTTTAGCAC GCCAGGCAGGGGCTCGGGTGG GTGTGAGCAT chr2:68989030-68989130 - 18 7.92e-07 AACTGGTGCT GGGTGGCGGGGACTGTGAGGA AGCTGACAGA chr15:36429833-36429933 - 80 7.92e-07 . GGCAGGGAGCGAGAGGAAGCA AGATGTAGAC chr11:113167469-11316756 - 61 8.99e-07 GACCCACCTA GCAAGGAAGGGGTGGCGTGGG CAAGGTCAGC chr13:91915324-91915424 + 80 1.15e-06 GCCACTGCTT GGGAGCGGAGGGTAGGCTGGG chr16:15084716-15084816 + 28 1.47e-06 GCGCACCGGG GCAGCGCGGAGGCGGCCCGGG AGCCGGCCTC chr17:73263006-73263106 + 59 1.65e-06 GCACCTTTGA GTGACAGAGAGAGTGGGCGGA GGCTGAGTCA chr10:111759870-11175997 + 1 1.65e-06 . GTGAGGGAGGGGCAGGGCTAG TGCTCTCTCC chr14:99855412-99855512 - 14 1.86e-06 ACATCATAAA GGGGGGGAGGGGGGGAAAGGA ATCAAATGGA chr14:77341569-77341669 - 79 2.34e-06 G GTGGGGGGGCGGGGGGGATGC GTTCAAATTC chr10:20854883-20854983 - 12 2.34e-06 GGGATCAGAG GGGACGCAGGGCTGCGCTGGA GCCTCTGACT chr5:128482979-128483079 + 67 2.63e-06 GATGCGAATC AGAACGGAAGGGGGTGGGGGA TCCTGCAGTG chr10:23260051-23260151 + 52 2.63e-06 ACAGAATGCA GGAAGAGACAGGCTTGGAGCG CATAAACAGG chr6:117574123-117574223 + 80 2.63e-06 CATACGTGCA AGATGGGAGAGGTGGTGTTGG chr8:89770442-89770542 - 4 2.94e-06 GAGAAGTGCT GGCTGAGGGGGGTCTGGAGGA GGA chr18:78882258-78882358 + 42 2.94e-06 TAACCCTACT GACTTGGAGGGGGAGGGGGAG GTGATAATTA chrX:99216454-99216554 - 26 3.28e-06 AAGCCCGCAG AGCGGAGAGAGACAGTGATGG CAGAAGGGCT chr15:41492073-41492173 + 19 3.66e-06 ATGCCATCAG AGCACACAGAGACACGCAGGA TGAGGAAGAA chr2:30712000-30712100 + 59 3.66e-06 CTGACGTCAG GGCCGGGGCCGCCAGGCCGCA CAGCTGGGAC chr13:43230153-43230253 + 44 3.66e-06 GGGTCTTTTT GGCAGGAGGTGGGGATGGGCA GGGGTGGAAA chr6:67725515-67725615 + 41 5.05e-06 TCTTGTGTCT GTGTGAGAAGGAGGGGCTGGG ATACATGAGT chr2:178263843-178263943 + 13 5.05e-06 TGGCCAGGCT GTCCCAGGGAGAGGGCCTGGG GATGTTCAGG chr6:131433520-131433620 + 66 5.61e-06 AGACGCCGCC GCCACGGAGGAGGAGGCGGAA GTCACAGAGA chr19:47348487-47348587 - 63 6.89e-06 GATGGGAGGG AGGATGGGGAGGGAGGCTTCG GGCTGGAGGG chr8:125538491-125538591 - 34 6.89e-06 CTCAAACCAG AGCAGTGTGAGACAGGCAGGG TGAAGGCCAC chr8:84456815-84456915 + 42 7.63e-06 CCACAGATCA GGCCCAGGGAGTTGGGCTGCG GAGGCTCCTC chr12:5322889-5322989 + 75 7.63e-06 TCTGGAGCTG GGCTGGCTCCGGCTGTGGGGA ACATG chr4:136755382-136755482 + 79 8.43e-06 GTGCTCGCAG GGGCCGAGGCGGGATTCGGCG C chr15:67220788-67220888 + 7 9.31e-06 ATTCAG GGGTGGGGAAGGGAGAGATGA CAAACTGTGT chr1:161170618-161170718 - 78 1.03e-05 TC GCCAGGAGGTGGCTCTCGGGC TCCAGGTTGC chr16:21333128-21333228 - 76 1.03e-05 GGAG GAAGCGGAAGGGCTGCGAGCG GCACTGCCGC chr4:55651060-55651160 + 72 1.03e-05 TTTCCCTTCA GTCGGGAGGGGAAATGGAGGG AGGCCAGA chr2:30707958-30708058 - 6 1.37e-05 CCGCCGCCCG GGCTCGCGCCGGATCGGGGCG CGCCT chr3:37896931-37897031 - 14 1.37e-05 TCCTGAGAGC GGCGCAGGAAGGGGCTCCTGA CGCAGACCAG chr4:62991204-62991304 - 63 1.37e-05 ATGCTAACTT GGCCGTGAGCGGTTCTCGGCA CATGTAGGGA chr11:62602514-62602614 + 50 1.50e-05 GGAGGCCTGG GTCGCGAGGCGGGCCGCTGGA AGTTCCCGTG chr15:59032101-59032201 + 24 1.65e-05 TGGGGATTCA GCCCCTGGGCGGCAGCCAGCA CAGTGCCATA chr7:115388923-115389023 - 11 1.65e-05 GCTTAGTGAA AGAAGAGTCGGGCACGCTGGA AAAAGAGAAC chr1:60860525-60860625 - 15 1.81e-05 AATTTGCTGT GTCAGGGTGGGATTTTCAGGA CCATCCATCT chr10:118399515-11839961 - 9 1.81e-05 GATGCCGACT GGCTTGGAATGGGGCGGAGAG CATGGCAG chr8:12126152-12126252 - 6 2.37e-05 GCATCCTTAG AGAGCGGGCTGGTTGGCATGG CCGTC chr16:77644291-77644391 - 43 2.58e-05 CAGGCACACA GACACACGGAGAGAGTCGGGC TAGCATCTGA chr8:107667918-107668018 + 56 2.82e-05 CTCCTCTGTG GACCCGAGGAGACGCTGAGCA CAAGGCAGTC chr14:99894023-99894123 + 38 2.82e-05 GCCACTTAGC ATCACCGCGTGGGAGGGAGCG TAGGTGTAAG chr18:36153533-36153633 + 20 3.07e-05 GGAAACACCG AAGGCGGGCAGGCAGGCGGAA TGATTCTGGG chr3:69342237-69342337 + 26 3.07e-05 AGATGGAGGG AGGACACAGAGGAATGGCGGA TGCTATTCTT chr9:116424970-116425070 + 26 3.34e-05 GGGTAGAGAA GCAGCCGAGAGGCGGCCTGAG AGGCAGGTCC chr11:93273846-93273946 - 60 3.64e-05 CCAATGACTC AAATCGAGGAGGGAGTCTGCA AACAGTGACT chr1:58652518-58652618 + 8 4.65e-05 GCTACTC GCGACGCTGCGCGAGCCCGGG ACCCTAAGTC chr6:32327110-32327210 + 2 5.05e-05 G GCGTGGGGAGGGGTAGGAGCC AGGCAGCTGA chr9:40743496-40743596 + 62 5.46e-05 AGCTGAGAAA GCGAGAAAGCGCTGTGCTGGG CAGAACAGGG chr18:59383179-59383279 - 58 5.91e-05 GGAGCTCTCT GCAGGCGAGTGCTACTGTGGG GTGCATTTTG chr18:55548971-55549071 - 75 5.91e-05 TGTTT ATATGAGCGTGGGAGTGTGGA GGAGGCAGTG chr2:83332693-83332793 + 15 6.39e-05 TAGCAAGATT AGGAGAGACAGACACACGGGA GAGATATAGA chr4:56231322-56231422 - 25 6.91e-05 AAAGAATCCA GGCGGGGACTGCAGCAGAGCG TGTTGCTCTG chr16:94720946-94721046 - 12 8.66e-05 CCTGGACCTA GCCGGGCAGTGGTGGCGCACG CCTGTAATCC chr13:21258999-21259099 + 80 9.33e-05 CTTTGGATAA AGCCTGGAGCGGCGAGGATCG chr12:105962609-10596270 - 11 1.08e-04 AACGCTAGAG GGAGCGCAAGGGTTGTCGTGC CTTGGGGTCC chr1:151087832-151087932 + 64 2.28e-04 TGAGTCATCC GCCTCAGTGTGTTTCGGCGGA GAGAGTGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSDSGGRGRGGBDGKSDGSR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:107357125-107357225 6.3e-11 66_[+2]_13 chr19:56423609-56423709 1e-09 29_[-2]_50 chr4:46891368-46891468 3.1e-09 51_[+2]_28 chr10:40751071-40751171 1.8e-08 70_[-2]_9 chr9:67632439-67632539 2.6e-08 78_[+2]_1 chr2:174598486-174598586 6e-08 69_[-2]_10 chr2:146745724-146745824 8.2e-08 22_[+2]_57 chr12:12221141-12221241 1.1e-07 36_[-2]_43 chr6:82863459-82863559 1.3e-07 20_[-2]_59 chr5:88958831-88958931 1.3e-07 69_[+2]_10 chr13:111725271-11172537 1.8e-07 74_[-2]_5 chr18:56756251-56756351 2e-07 42_[-2]_37 chr2:21141621-21141721 2.7e-07 29_[+2]_50 chr13:29014500-29014600 3.1e-07 65_[-2]_14 chr9:122629082-122629182 4.7e-07 68_[+2]_11 chr2:68989030-68989130 7.9e-07 17_[-2]_62 chr15:36429833-36429933 7.9e-07 79_[-2] chr11:113167469-11316756 9e-07 60_[-2]_19 chr13:91915324-91915424 1.2e-06 79_[+2] chr16:15084716-15084816 1.5e-06 27_[+2]_52 chr17:73263006-73263106 1.7e-06 58_[+2]_21 chr10:111759870-11175997 1.7e-06 [+2]_79 chr14:99855412-99855512 1.9e-06 13_[-2]_66 chr14:77341569-77341669 2.3e-06 78_[-2]_1 chr10:20854883-20854983 2.3e-06 11_[-2]_68 chr5:128482979-128483079 2.6e-06 66_[+2]_13 chr10:23260051-23260151 2.6e-06 51_[+2]_28 chr6:117574123-117574223 2.6e-06 79_[+2] chr8:89770442-89770542 2.9e-06 3_[-2]_76 chr18:78882258-78882358 2.9e-06 41_[+2]_38 chrX:99216454-99216554 3.3e-06 25_[-2]_54 chr15:41492073-41492173 3.7e-06 18_[+2]_61 chr2:30712000-30712100 3.7e-06 58_[+2]_21 chr13:43230153-43230253 3.7e-06 43_[+2]_36 chr6:67725515-67725615 5.1e-06 40_[+2]_39 chr2:178263843-178263943 5.1e-06 12_[+2]_67 chr6:131433520-131433620 5.6e-06 65_[+2]_14 chr19:47348487-47348587 6.9e-06 62_[-2]_17 chr8:125538491-125538591 6.9e-06 33_[-2]_46 chr8:84456815-84456915 7.6e-06 41_[+2]_38 chr12:5322889-5322989 7.6e-06 74_[+2]_5 chr4:136755382-136755482 8.4e-06 78_[+2]_1 chr15:67220788-67220888 9.3e-06 6_[+2]_73 chr1:161170618-161170718 1e-05 77_[-2]_2 chr16:21333128-21333228 1e-05 75_[-2]_4 chr4:55651060-55651160 1e-05 71_[+2]_8 chr2:30707958-30708058 1.4e-05 5_[-2]_74 chr3:37896931-37897031 1.4e-05 13_[-2]_66 chr4:62991204-62991304 1.4e-05 62_[-2]_17 chr11:62602514-62602614 1.5e-05 49_[+2]_30 chr15:59032101-59032201 1.6e-05 23_[+2]_56 chr7:115388923-115389023 1.6e-05 10_[-2]_69 chr1:60860525-60860625 1.8e-05 14_[-2]_65 chr10:118399515-11839961 1.8e-05 8_[-2]_71 chr8:12126152-12126252 2.4e-05 5_[-2]_74 chr16:77644291-77644391 2.6e-05 42_[-2]_37 chr8:107667918-107668018 2.8e-05 55_[+2]_24 chr14:99894023-99894123 2.8e-05 37_[+2]_42 chr18:36153533-36153633 3.1e-05 19_[+2]_60 chr3:69342237-69342337 3.1e-05 25_[+2]_54 chr9:116424970-116425070 3.3e-05 25_[+2]_54 chr11:93273846-93273946 3.6e-05 59_[-2]_20 chr1:58652518-58652618 4.7e-05 7_[+2]_72 chr6:32327110-32327210 5e-05 1_[+2]_78 chr9:40743496-40743596 5.5e-05 61_[+2]_18 chr18:59383179-59383279 5.9e-05 57_[-2]_22 chr18:55548971-55549071 5.9e-05 74_[-2]_5 chr2:83332693-83332793 6.4e-05 14_[+2]_65 chr4:56231322-56231422 6.9e-05 24_[-2]_55 chr16:94720946-94721046 8.7e-05 11_[-2]_68 chr13:21258999-21259099 9.3e-05 79_[+2] chr12:105962609-10596270 0.00011 10_[-2]_69 chr1:151087832-151087932 0.00023 63_[+2]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSDSGGRGRGGBDGKSDGSR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSDSGGRGRGGBDGKSDGSR width=21 seqs=73 chr3:107357125-107357225 ( 67) GGCGGGGAGGGGGGCGGGGGG 1 chr19:56423609-56423709 ( 30) GGAAGGGAGGGGTGGGGGGGA 1 chr4:46891368-46891468 ( 52) AGCAGAGAGAGGGAGGGAGGG 1 chr10:40751071-40751171 ( 71) GCCAGGGAGAGGTGGTGTGCG 1 chr9:67632439-67632539 ( 79) GCCAGGGAGAGGCTGTGCGCG 1 chr2:174598486-174598586 ( 70) GACACGGGGTGGGAGTGGGGG 1 chr2:146745724-146745824 ( 23) GGGAGGGAGGAGCAGGGAGGG 1 chr12:12221141-12221241 ( 37) GGAGGGAGGAGGGAGTCAGGA 1 chr6:82863459-82863559 ( 21) GGCAGGCAGAGGTTCTGGGGA 1 chr5:88958831-88958931 ( 70) ATAGGGGAGAGGGAGGCTGGG 1 chr13:111725271-11172537 ( 75) GGCTGAGGCGGGCGGGCCGCG 1 chr18:56756251-56756351 ( 43) GGCTGGCAGGGAGACGGAGCA 1 chr2:21141621-21141721 ( 30) GGAGGAGAGGGGAGGGGCGCG 1 chr13:29014500-29014600 ( 66) GTGCGGGCGGGGGGGGGGGGG 1 chr9:122629082-122629182 ( 69) GCCAGGCAGGGGCTCGGGTGG 1 chr2:68989030-68989130 ( 18) GGGTGGCGGGGACTGTGAGGA 1 chr15:36429833-36429933 ( 80) GGCAGGGAGCGAGAGGAAGCA 1 chr11:113167469-11316756 ( 61) GCAAGGAAGGGGTGGCGTGGG 1 chr13:91915324-91915424 ( 80) GGGAGCGGAGGGTAGGCTGGG 1 chr16:15084716-15084816 ( 28) GCAGCGCGGAGGCGGCCCGGG 1 chr17:73263006-73263106 ( 59) GTGACAGAGAGAGTGGGCGGA 1 chr10:111759870-11175997 ( 1) GTGAGGGAGGGGCAGGGCTAG 1 chr14:99855412-99855512 ( 14) GGGGGGGAGGGGGGGAAAGGA 1 chr14:77341569-77341669 ( 79) GTGGGGGGGCGGGGGGGATGC 1 chr10:20854883-20854983 ( 12) GGGACGCAGGGCTGCGCTGGA 1 chr5:128482979-128483079 ( 67) AGAACGGAAGGGGGTGGGGGA 1 chr10:23260051-23260151 ( 52) GGAAGAGACAGGCTTGGAGCG 1 chr6:117574123-117574223 ( 80) AGATGGGAGAGGTGGTGTTGG 1 chr8:89770442-89770542 ( 4) GGCTGAGGGGGGTCTGGAGGA 1 chr18:78882258-78882358 ( 42) GACTTGGAGGGGGAGGGGGAG 1 chrX:99216454-99216554 ( 26) AGCGGAGAGAGACAGTGATGG 1 chr15:41492073-41492173 ( 19) AGCACACAGAGACACGCAGGA 1 chr2:30712000-30712100 ( 59) GGCCGGGGCCGCCAGGCCGCA 1 chr13:43230153-43230253 ( 44) GGCAGGAGGTGGGGATGGGCA 1 chr6:67725515-67725615 ( 41) GTGTGAGAAGGAGGGGCTGGG 1 chr2:178263843-178263943 ( 13) GTCCCAGGGAGAGGGCCTGGG 1 chr6:131433520-131433620 ( 66) GCCACGGAGGAGGAGGCGGAA 1 chr19:47348487-47348587 ( 63) AGGATGGGGAGGGAGGCTTCG 1 chr8:125538491-125538591 ( 34) AGCAGTGTGAGACAGGCAGGG 1 chr8:84456815-84456915 ( 42) GGCCCAGGGAGTTGGGCTGCG 1 chr12:5322889-5322989 ( 75) GGCTGGCTCCGGCTGTGGGGA 1 chr4:136755382-136755482 ( 79) GGGCCGAGGCGGGATTCGGCG 1 chr15:67220788-67220888 ( 7) GGGTGGGGAAGGGAGAGATGA 1 chr1:161170618-161170718 ( 78) GCCAGGAGGTGGCTCTCGGGC 1 chr16:21333128-21333228 ( 76) GAAGCGGAAGGGCTGCGAGCG 1 chr4:55651060-55651160 ( 72) GTCGGGAGGGGAAATGGAGGG 1 chr2:30707958-30708058 ( 6) GGCTCGCGCCGGATCGGGGCG 1 chr3:37896931-37897031 ( 14) GGCGCAGGAAGGGGCTCCTGA 1 chr4:62991204-62991304 ( 63) GGCCGTGAGCGGTTCTCGGCA 1 chr11:62602514-62602614 ( 50) GTCGCGAGGCGGGCCGCTGGA 1 chr15:59032101-59032201 ( 24) GCCCCTGGGCGGCAGCCAGCA 1 chr7:115388923-115389023 ( 11) AGAAGAGTCGGGCACGCTGGA 1 chr1:60860525-60860625 ( 15) GTCAGGGTGGGATTTTCAGGA 1 chr10:118399515-11839961 ( 9) GGCTTGGAATGGGGCGGAGAG 1 chr8:12126152-12126252 ( 6) AGAGCGGGCTGGTTGGCATGG 1 chr16:77644291-77644391 ( 43) GACACACGGAGAGAGTCGGGC 1 chr8:107667918-107668018 ( 56) GACCCGAGGAGACGCTGAGCA 1 chr14:99894023-99894123 ( 38) ATCACCGCGTGGGAGGGAGCG 1 chr18:36153533-36153633 ( 20) AAGGCGGGCAGGCAGGCGGAA 1 chr3:69342237-69342337 ( 26) AGGACACAGAGGAATGGCGGA 1 chr9:116424970-116425070 ( 26) GCAGCCGAGAGGCGGCCTGAG 1 chr11:93273846-93273946 ( 60) AAATCGAGGAGGGAGTCTGCA 1 chr1:58652518-58652618 ( 8) GCGACGCTGCGCGAGCCCGGG 1 chr6:32327110-32327210 ( 2) GCGTGGGGAGGGGTAGGAGCC 1 chr9:40743496-40743596 ( 62) GCGAGAAAGCGCTGTGCTGGG 1 chr18:59383179-59383279 ( 58) GCAGGCGAGTGCTACTGTGGG 1 chr18:55548971-55549071 ( 75) ATATGAGCGTGGGAGTGTGGA 1 chr2:83332693-83332793 ( 15) AGGAGAGACAGACACACGGGA 1 chr4:56231322-56231422 ( 25) GGCGGGGACTGCAGCAGAGCG 1 chr16:94720946-94721046 ( 12) GCCGGGCAGTGGTGGCGCACG 1 chr13:21258999-21259099 ( 80) AGCCTGGAGCGGCGAGGATCG 1 chr12:105962609-10596270 ( 11) GGAGCGCAAGGGTTGTCGTGC 1 chr1:151087832-151087932 ( 64) GCCTCAGTGTGTTTCGGCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSDSGGRGRGGBDGKSDGSR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.2204 E= 2.1e-015 -23 -1283 176 -1283 -151 -14 124 -73 -23 116 20 -1283 59 -88 20 -41 -1283 65 138 -232 -7 -205 151 -273 -100 -24 157 -1283 89 -246 71 -173 -115 -73 171 -1283 32 -46 60 -86 -332 -1283 210 -1283 -51 -146 162 -332 -200 41 81 -23 59 -305 60 -32 -273 12 141 -132 -232 -105 127 7 -332 91 127 -1283 32 -46 20 -23 -432 -1283 188 -86 -173 48 141 -1283 59 -173 120 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSDSGGRGRGGBDGKSDGSR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 73 E= 2.1e-015 0.232877 0.000000 0.767123 0.000000 0.095890 0.205479 0.534247 0.164384 0.232877 0.506849 0.260274 0.000000 0.410959 0.123288 0.260274 0.205479 0.000000 0.356164 0.589041 0.054795 0.260274 0.054795 0.643836 0.041096 0.136986 0.191781 0.671233 0.000000 0.506849 0.041096 0.369863 0.082192 0.123288 0.136986 0.739726 0.000000 0.342466 0.164384 0.342466 0.150685 0.027397 0.000000 0.972603 0.000000 0.191781 0.082192 0.698630 0.027397 0.068493 0.301370 0.397260 0.232877 0.410959 0.027397 0.342466 0.219178 0.041096 0.246575 0.602740 0.109589 0.054795 0.109589 0.547945 0.287671 0.027397 0.424658 0.547945 0.000000 0.342466 0.164384 0.260274 0.232877 0.013699 0.000000 0.835616 0.150685 0.082192 0.315068 0.602740 0.000000 0.410959 0.068493 0.520548 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSDSGGRGRGGBDGKSDGSR MEME-2 regular expression -------------------------------------------------------------------------------- [GA][GC][CGA][AGT][GC][GA]G[AG]G[AG]GG[GCT][AGT][GC][GT][GC][AGT]G[GC][GA] -------------------------------------------------------------------------------- Time 971.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGCTGTG MEME-3 width = 8 sites = 136 llr = 1097 E-value = 6.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGCTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :6:::::: pos.-specific C 8::a:21: probability G 2:8::82a matrix T :42:a:7: bits 2.1 * 1.9 ** * 1.7 ** * 1.5 * *** * Relative 1.3 * **** * Entropy 1.1 * **** * (11.6 bits) 0.9 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr15:58588993-58589093 + 57 1.23e-05 CAAAGGCAAA CAGCTGTG CTCAATTTGA chr8:84456815-84456915 + 15 1.23e-05 TTGCTCAGCA CAGCTGTG AGCGGGGTCC chr1:143903880-143903980 - 88 1.23e-05 ATTAA CAGCTGTG ACACTGATTC chr18:87121234-87121334 + 70 1.23e-05 CCCTCACAGC CAGCTGTG GCCTCTGATG chr9:29316787-29316887 - 45 1.23e-05 TTGGCGAGTT CAGCTGTG AGTCCAGTGG chr17:64901414-64901514 + 2 1.23e-05 G CAGCTGTG ACTCACAGAC chr5:57898992-57899092 + 54 1.23e-05 GCTCCCTCAG CAGCTGTG TGAGTGTGGG chr9:103867760-103867860 + 4 1.23e-05 TTT CAGCTGTG TAAAATTTGG chr14:105416903-10541700 - 21 1.23e-05 CGATGGGAAG CAGCTGTG CCTGCCTCCA chr9:42764782-42764882 - 48 1.23e-05 TAATTGTCTT CAGCTGTG TGGGGCTGCA chr6:67725515-67725615 + 81 1.23e-05 TAATTCTTTG CAGCTGTG AGCTCTGGTC chr3:137821863-137821963 + 34 1.23e-05 AATCACAAGC CAGCTGTG CATGCTCCTC chr1:97640406-97640506 - 33 1.23e-05 TCTGTGTCCA CAGCTGTG TGGTGAAGTG chr6:33891898-33891998 + 25 1.23e-05 gtggaggaag cagctgtg tacagtggga chr11:88132096-88132196 + 20 1.23e-05 GAccgtggag cagctgtg ttagcaccac chr9:20702034-20702134 + 5 1.23e-05 CATA CAGCTGTG ACCTCCATAT chr18:23461056-23461156 + 30 1.23e-05 CATGGGAGCT CAGCTGTG TGAGCTTGCT chr13:28758934-28759034 + 80 1.23e-05 aagacaggca cagctgtg tgctccagaa chr8:8354914-8355014 - 24 1.23e-05 GCCAGCTCAG CAGCTGTG CATGGGCTCA chr8:52704001-52704101 - 83 1.23e-05 TTCTAGGAGT CAGCTGTG TTCCCTAAGA chr13:52278733-52278833 + 44 1.23e-05 gaatcactcc cagctgtg atggtttgga chr8:33468443-33468543 + 52 1.23e-05 CCTGGCTCCA CAGCTGTG TGTGCGTTCT chr13:25982146-25982246 + 3 2.45e-05 AG CTGCTGTG TTATGATGAT chr10:41830833-41830933 + 22 2.45e-05 CAGCAGTTAG CTGCTGTG AGCACTAGGT chr8:12126152-12126252 + 90 2.45e-05 TTTCTCTGCG CTGCTGTG AGG chr18:26104223-26104323 - 38 2.45e-05 CAAAGTCTGC CTGCTGTG CAGCTCAAGC chr17:8468671-8468771 - 78 2.45e-05 TAGCTAGGCT CTGCTGTG GCTCCAGCCT chr6:135951582-135951682 - 87 2.45e-05 GAGTCA CTGCTGTG CTGGCTCCCA chr10:74053021-74053121 + 48 2.45e-05 AAGTGTAGCT CTGCTGTG CGATGCAGCT chr3:129614033-129614133 + 66 2.45e-05 CCCATGTGTC CTGCTGTG CCCCAGCACA chr12:7191834-7191934 + 2 2.45e-05 A CTGCTGTG AGCTTCTCCA chr13:47319552-47319652 - 47 4.49e-05 GGAGGCAGTA CAGCTGGG AGTCATTAGC chr6:53449018-53449118 - 63 4.49e-05 AGTCTGGGGC CAGCTGGG TAAATTATTG chr1:142982908-142983008 + 41 4.49e-05 CCCTTGCATC CAGCTGGG TGAATATTTT chr2:30712000-30712100 + 80 4.49e-05 CCAGGCCGCA CAGCTGGG ACGATGCCAC chr2:42470285-42470385 + 55 4.49e-05 TTAGAGGAGG CAGCTGGG TAGCACAGTA chr1:188093550-188093650 + 81 4.49e-05 TATGGGCAGG CAGCTGGG CACAGATCAA chr5:14325756-14325856 + 21 4.49e-05 CTGCACCCTA CAGCTGGG AAGTTACCCT chr18:75660004-75660104 + 32 4.49e-05 GAATAACATA CAGCTGGG AGAACAGGGT chr17:5813875-5813975 + 70 4.49e-05 CAGAAAGCAT CAGCTGGG TTGGCTGGAA chr13:30628371-30628471 - 34 4.49e-05 GTGCTGCCTC CAGCTGGG CTCTGCCAGA chr13:113269746-11326984 - 7 4.49e-05 AAGTAGAGCG CAGCTGCG TTCCTA chr4:120023966-120024066 - 87 4.49e-05 TACTGA CAGCTGCG AGGAGCAGAT chr12:105962609-10596270 - 69 4.49e-05 GCAGGCAGCT CAGCTGCG CAGCAGCCCA chr6:77871380-77871480 - 56 4.49e-05 ATTAGGGGTT CAGCTGGG GATGAAAATA chr12:100421534-10042163 - 92 4.49e-05 C CAGCTGGG GACAGCTCGC chr13:114009789-11400988 - 88 5.72e-05 TTGGA CAGCTCTG GGTAAGACGA chr14:60125179-60125279 + 93 5.72e-05 GAAGATCCTG CAGCTCTG chr17:30117861-30117961 + 26 5.72e-05 TAAAGTGCTG CAGCTCTG AAGGGCATCT chr4:87109614-87109714 - 20 5.72e-05 ATGACAGCAA CAGCTCTG TACTTCAGGG chr13:112188151-11218825 + 80 5.72e-05 GCCCTCCTCT CAGCTCTG GCCTTATGCT chr2:5249841-5249941 + 34 5.72e-05 TCCGCTGGAT CAGCTCTG TGTCTCCCTC chr12:29760394-29760494 - 47 5.72e-05 AGTGTGGATT CAGCTCTG TCTCTGAGAA chr3:144617580-144617680 - 89 5.72e-05 TCTA CAGCTCTG GCTGGAACTG chr5:129300395-129300495 - 76 5.72e-05 CTTCCTGAGT CAGCTCTG GCTCCAGTGT chr2:55280839-55280939 + 16 5.72e-05 TGAGATTTTT CAGCTCTG CTAAATCATG chr18:38087186-38087286 - 41 7.19e-05 CTGCAGCCCA CATCTGTG GAAACCAGGC chr2:68435724-68435824 - 9 7.19e-05 TGCTCGAGAA CATCTGTG AAGCAGGC chr12:55273697-55273797 + 11 7.19e-05 GGCTTAGCAA CATCTGTG ATCAAGTAAC chr10:126664606-12666470 - 62 7.19e-05 TGGCTCTGGG CATCTGTG CTATGGAACG chr10:111543489-11154358 - 52 7.19e-05 AGTGGGAAGG CATCTGTG ATTCAGAGAT chr13:47157410-47157510 + 58 7.19e-05 TCCACTTCCC CATCTGTG CCCAGCCATT chr16:42032064-42032164 + 68 7.19e-05 TTTGGGTCTC CATCTGTG CCTCTGTTCT chr5:13551960-13552060 - 17 7.19e-05 TTCCTTTAGC CATCTGTG CAATGCTACA chr9:77486864-77486964 - 37 7.19e-05 GGAGGCCAGG CATCTGTG AGGGAAACCA chr16:14237196-14237296 - 75 7.19e-05 TGCTGCTAAA CATCTGTG GATGTACTGG chr12:56404801-56404901 - 39 7.19e-05 GGGCAGCACA CATCTGTG GCCTTGCACA chr17:12187694-12187794 + 83 1.05e-04 GCCATGGCTA CTGCTGGG CCGATAAGGG chr17:86582274-86582374 + 26 1.05e-04 AATGGACCAG CTGCTGGG ATCTCTCATC chr17:29459483-29459583 + 54 1.05e-04 ATGAGGTCAG GAGCTGTG GGGACCAGCA chr3:79114581-79114681 + 85 1.05e-04 CAGCCAGAGG CTGCTGGG ATAATGAG chr15:77257312-77257412 + 71 1.05e-04 GGGGGCGCGT CTGCTGGG TCCAACCCTC chr14:46967677-46967777 + 55 1.05e-04 GGACACAACT CTGCTGCG GAATGATGGA chr6:21591938-21592038 + 24 1.05e-04 GAATCACAGA GAGCTGTG TCAGCCTTTA chr7:37564576-37564676 - 5 1.05e-04 CCTCTCCAAA CTGCTGGG AACC chr15:25882104-25882204 - 50 1.05e-04 TAAGAGTTAG GAGCTGTG CCCTGAGCCC chr2:136351683-136351783 - 38 1.05e-04 ATTCCAGTCA CTGCTGCG TTCACCAGCT chr19:58018622-58018722 + 91 1.05e-04 CTGTCTTATG CTGCTGGG AA chr15:77196233-77196333 - 62 1.05e-04 GAAGAAAGTG CTGCTGGG TCTGGGTAAT chr8:79083349-79083449 - 6 1.05e-04 TGCCCCTCTG CTGCTGCG GAGGG chr10:20854883-20854983 - 42 1.05e-04 ACTGCATAAC GAGCTGTG GGATCAGAGG chr2:104208343-104208443 - 25 1.05e-04 AGCATCCAGA GAGCTGTG TGAAGGGAAG chr15:41193181-41193281 - 66 1.17e-04 CTGCTAAATT CTGCTCTG CAGATGTTCA chr19:24054787-24054887 + 51 1.17e-04 AAACTCCCAT CTGCTCTG TTGAGTGAAG chr6:18711170-18711270 - 77 1.17e-04 AGCTCAGGCT CTGCTCTG TCTTGTCTTC chr19:47348487-47348587 - 22 1.17e-04 AGGCTTCAGG CTGCTCTG CTCGCTGCCA chr15:38177331-38177431 - 31 1.17e-04 GGTTCTGTAC CTGCTCTG CAACACTTAG chr2:168626220-168626320 - 38 1.17e-04 CACGGAGCCT CTGCTCTG CTAGGGCAGC chr19:58059546-58059646 + 17 1.17e-04 TGCGTCTAAT CTGCTCTG TTTCAGGATT chr11:9731640-9731740 - 29 1.17e-04 TTCCTTTCAA CTGCTCTG ACTCAACTCC chr7:75008447-75008547 + 32 1.32e-04 CCTCCAGATC CTTCTGTG TGCTGGATGC chr2:146745724-146745824 + 5 1.32e-04 GAGC CTTCTGTG GTGGCCTTGC chr3:85465569-85465669 - 64 1.32e-04 CGGAAAGCAG CTTCTGTG AGCAAGGCTG chr15:62039517-62039617 + 19 1.32e-04 TCCTGTTTTG CTTCTGTG ACAGCAGTTT chr16:6946160-6946260 - 12 1.32e-04 ACTGTATCTG CTTCTGTG CATGAAAGCG chr2:107973500-107973600 - 83 1.32e-04 CCGGATCTGA CTTCTGTG CAGGAGAGAC chr16:77644291-77644391 - 10 1.32e-04 ACTCAGAGCG CTTCTGTG TGCAAGGGG chr12:29187550-29187650 + 4 1.32e-04 CCT CTTCTGTG AGCTCCCAGC chr8:14474812-14474912 - 58 1.32e-04 TGAGCATCCA CTTCTGTG TGGGCAGACT chr2:92278599-92278699 + 53 1.44e-04 GCCACTCTGT GTGCTGTG CACAGTGTGC chr10:117094808-11709490 - 39 1.44e-04 TAATCACAGA GTGCTGTG TGGGCAGCAT chr12:29083814-29083914 - 27 1.44e-04 CTGATGCAGT GTGCTGTG TCAAATCGCT chr16:49908263-49908363 + 65 1.44e-04 GCTTTTGTGG GTGCTGTG GGTGTGAGCT chr5:88973842-88973942 + 63 1.44e-04 CAGAACCTGA GTGCTGTG ACTCTGACTT chr10:8111687-8111787 + 65 1.44e-04 TTTTTAGTCT GTGCTGTG CTTGTCACAC chr14:78900811-78900911 - 79 1.44e-04 GCACTGTGCA GTGCTGTG TGATGCCTGT chr8:44767228-44767328 - 87 1.44e-04 GGAAGG GTGCTGTG GTGAACATCT chr9:13543134-13543234 + 26 1.44e-04 tgtcgactgA GTGCTGTG TGCTTTCTAT chr9:118003148-118003248 + 46 1.44e-04 CAGCCAGCCA GTGCTGTG CTGCTAAGTT chr15:81128088-81128188 - 57 1.54e-04 ATTAGATACT CGGCTGTG TATGGTAATT chrX:99216454-99216554 - 85 1.74e-04 CCAACGCG CAGCTCCG CAAGGGCCAT chr10:85466758-85466858 - 5 1.74e-04 ACTCTCAGTT CAGCTCGG ATAC chr15:32418511-32418611 - 31 1.74e-04 AAAACCAGAA CAGCTCCG GCATGCTTCC chr2:117180438-117180538 - 53 1.74e-04 GGTGGCACTG CAGCTCCG CAAGCACTGC chr19:56423609-56423709 - 22 1.74e-04 GTGGGGGGGA CAGCTCGG CCTCGTCTTT chr3:103496102-103496202 + 48 1.99e-04 AGGTTTGAAA CATCTGCG GATTCATAGC chr3:107357125-107357225 - 27 1.99e-04 CAGAGTTTGG CATCTGCG GGTCTTTTCT chr2:30707958-30708058 + 52 2.34e-04 gcggccccgA GAGCTGCG CGAACCAggc chr19:26968113-26968213 + 16 2.34e-04 CTCAGAGCTA GAGCTGCG ACTCATAAGG chr5:9055968-9056068 - 8 2.67e-04 GAAAGAGAGT CTGCTCCG TTTTTTT chr11:84642119-84642219 + 5 3.41e-04 AGAA GTGCTGCG GGGAGGGAGC chr6:8627315-8627415 - 83 3.41e-04 CAATATATCA GTGCTGCG CCTGGCTTTG chr17:59421754-59421854 + 29 3.64e-04 GACTTAAGAC GTGCTCTG GAGTATATCC chr3:18625440-18625540 + 19 3.64e-04 AGAGAGCTGG CCGCTGTG GTTCCCCAGT chr2:127182672-127182772 + 26 3.64e-04 CGGAATTATT CCGCTGTG TCCCTTCAGC chr4:108914335-108914435 + 89 3.93e-04 cattacattc gttctgtg tctc chr8:10448504-10448604 + 82 3.93e-04 GCGCAAGTGA CAGCTGTA CACTGCGGCC chr12:80213698-80213798 + 69 3.93e-04 GGAGCCTCTG CAGCTGTA CCCAAAtgac chr18:24953392-24953492 - 49 3.93e-04 TATTTCCTGG CAGCTGTA ATTACACGCT chr10:105489665-10548976 - 59 3.93e-04 CGCTCAAGGC CAGCTGTA GTCTCCAGCA chr19:33226935-33227035 - 14 4.25e-04 TTAGATCGGC CTGCTGTA CAGGAGCCCT chr3:18670294-18670394 - 24 4.25e-04 GCATAATGCT CGGCTGCG GGATGTGTGA chr9:122629082-122629182 - 34 4.47e-04 AGGCGCATTC CGTCTGTG ACTCATCCAG chr17:63303884-63303984 - 66 4.82e-04 CTTAGTCTCA CATCTCCG TCTTTGCTGA chr1:33932867-33932967 + 16 8.42e-04 CAGCAGCCAC CGTCTGCG GATACATCAC chr1:161170618-161170718 + 12 8.42e-04 GCGGAGCCTG CGTCTGCG CTCCACAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:58588993-58589093 1.2e-05 56_[+3]_36 chr8:84456815-84456915 1.2e-05 14_[+3]_78 chr1:143903880-143903980 1.2e-05 87_[-3]_5 chr18:87121234-87121334 1.2e-05 69_[+3]_23 chr9:29316787-29316887 1.2e-05 44_[-3]_48 chr17:64901414-64901514 1.2e-05 1_[+3]_91 chr5:57898992-57899092 1.2e-05 53_[+3]_39 chr9:103867760-103867860 1.2e-05 3_[+3]_89 chr14:105416903-10541700 1.2e-05 20_[-3]_72 chr9:42764782-42764882 1.2e-05 47_[-3]_45 chr6:67725515-67725615 1.2e-05 80_[+3]_12 chr3:137821863-137821963 1.2e-05 33_[+3]_59 chr1:97640406-97640506 1.2e-05 32_[-3]_60 chr6:33891898-33891998 1.2e-05 24_[+3]_68 chr11:88132096-88132196 1.2e-05 19_[+3]_73 chr9:20702034-20702134 1.2e-05 4_[+3]_88 chr18:23461056-23461156 1.2e-05 29_[+3]_63 chr13:28758934-28759034 1.2e-05 79_[+3]_13 chr8:8354914-8355014 1.2e-05 23_[-3]_69 chr8:52704001-52704101 1.2e-05 82_[-3]_10 chr13:52278733-52278833 1.2e-05 43_[+3]_49 chr8:33468443-33468543 1.2e-05 51_[+3]_41 chr13:25982146-25982246 2.5e-05 2_[+3]_90 chr10:41830833-41830933 2.5e-05 21_[+3]_71 chr8:12126152-12126252 2.5e-05 89_[+3]_3 chr18:26104223-26104323 2.5e-05 37_[-3]_55 chr17:8468671-8468771 2.5e-05 77_[-3]_15 chr6:135951582-135951682 2.5e-05 86_[-3]_6 chr10:74053021-74053121 2.5e-05 47_[+3]_45 chr3:129614033-129614133 2.5e-05 65_[+3]_27 chr12:7191834-7191934 2.5e-05 1_[+3]_91 chr13:47319552-47319652 4.5e-05 46_[-3]_46 chr6:53449018-53449118 4.5e-05 62_[-3]_30 chr1:142982908-142983008 4.5e-05 40_[+3]_52 chr2:30712000-30712100 4.5e-05 79_[+3]_13 chr2:42470285-42470385 4.5e-05 54_[+3]_38 chr1:188093550-188093650 4.5e-05 80_[+3]_12 chr5:14325756-14325856 4.5e-05 20_[+3]_72 chr18:75660004-75660104 4.5e-05 31_[+3]_61 chr17:5813875-5813975 4.5e-05 69_[+3]_23 chr13:30628371-30628471 4.5e-05 33_[-3]_59 chr13:113269746-11326984 4.5e-05 6_[-3]_86 chr4:120023966-120024066 4.5e-05 86_[-3]_6 chr12:105962609-10596270 4.5e-05 68_[-3]_24 chr6:77871380-77871480 4.5e-05 55_[-3]_37 chr12:100421534-10042163 4.5e-05 91_[-3]_1 chr13:114009789-11400988 5.7e-05 87_[-3]_5 chr14:60125179-60125279 5.7e-05 92_[+3] chr17:30117861-30117961 5.7e-05 25_[+3]_67 chr4:87109614-87109714 5.7e-05 19_[-3]_73 chr13:112188151-11218825 5.7e-05 79_[+3]_13 chr2:5249841-5249941 5.7e-05 33_[+3]_59 chr12:29760394-29760494 5.7e-05 46_[-3]_46 chr3:144617580-144617680 5.7e-05 88_[-3]_4 chr5:129300395-129300495 5.7e-05 75_[-3]_17 chr2:55280839-55280939 5.7e-05 15_[+3]_77 chr18:38087186-38087286 7.2e-05 40_[-3]_52 chr2:68435724-68435824 7.2e-05 8_[-3]_84 chr12:55273697-55273797 7.2e-05 10_[+3]_82 chr10:126664606-12666470 7.2e-05 61_[-3]_31 chr10:111543489-11154358 7.2e-05 51_[-3]_41 chr13:47157410-47157510 7.2e-05 57_[+3]_35 chr16:42032064-42032164 7.2e-05 67_[+3]_25 chr5:13551960-13552060 7.2e-05 16_[-3]_76 chr9:77486864-77486964 7.2e-05 36_[-3]_56 chr16:14237196-14237296 7.2e-05 74_[-3]_18 chr12:56404801-56404901 7.2e-05 38_[-3]_54 chr17:12187694-12187794 0.0001 82_[+3]_10 chr17:86582274-86582374 0.0001 25_[+3]_67 chr17:29459483-29459583 0.0001 53_[+3]_39 chr3:79114581-79114681 0.0001 84_[+3]_8 chr15:77257312-77257412 0.0001 70_[+3]_22 chr14:46967677-46967777 0.0001 54_[+3]_38 chr6:21591938-21592038 0.0001 23_[+3]_69 chr7:37564576-37564676 0.0001 4_[-3]_88 chr15:25882104-25882204 0.0001 49_[-3]_43 chr2:136351683-136351783 0.0001 37_[-3]_55 chr19:58018622-58018722 0.0001 90_[+3]_2 chr15:77196233-77196333 0.0001 61_[-3]_31 chr8:79083349-79083449 0.0001 5_[-3]_87 chr10:20854883-20854983 0.0001 41_[-3]_51 chr2:104208343-104208443 0.0001 24_[-3]_68 chr15:41193181-41193281 0.00012 65_[-3]_27 chr19:24054787-24054887 0.00012 50_[+3]_42 chr6:18711170-18711270 0.00012 76_[-3]_16 chr19:47348487-47348587 0.00012 21_[-3]_71 chr15:38177331-38177431 0.00012 30_[-3]_62 chr2:168626220-168626320 0.00012 37_[-3]_55 chr19:58059546-58059646 0.00012 16_[+3]_76 chr11:9731640-9731740 0.00012 28_[-3]_64 chr7:75008447-75008547 0.00013 31_[+3]_61 chr2:146745724-146745824 0.00013 4_[+3]_88 chr3:85465569-85465669 0.00013 63_[-3]_29 chr15:62039517-62039617 0.00013 18_[+3]_74 chr16:6946160-6946260 0.00013 11_[-3]_81 chr2:107973500-107973600 0.00013 82_[-3]_10 chr16:77644291-77644391 0.00013 9_[-3]_83 chr12:29187550-29187650 0.00013 3_[+3]_89 chr8:14474812-14474912 0.00013 57_[-3]_35 chr2:92278599-92278699 0.00014 52_[+3]_40 chr10:117094808-11709490 0.00014 38_[-3]_54 chr12:29083814-29083914 0.00014 26_[-3]_66 chr16:49908263-49908363 0.00014 64_[+3]_28 chr5:88973842-88973942 0.00014 62_[+3]_30 chr10:8111687-8111787 0.00014 64_[+3]_28 chr14:78900811-78900911 0.00014 78_[-3]_14 chr8:44767228-44767328 0.00014 86_[-3]_6 chr9:13543134-13543234 0.00014 25_[+3]_67 chr9:118003148-118003248 0.00014 45_[+3]_47 chr15:81128088-81128188 0.00015 56_[-3]_36 chrX:99216454-99216554 0.00017 84_[-3]_8 chr10:85466758-85466858 0.00017 4_[-3]_88 chr15:32418511-32418611 0.00017 30_[-3]_62 chr2:117180438-117180538 0.00017 52_[-3]_40 chr19:56423609-56423709 0.00017 21_[-3]_71 chr3:103496102-103496202 0.0002 47_[+3]_45 chr3:107357125-107357225 0.0002 26_[-3]_66 chr2:30707958-30708058 0.00023 51_[+3]_41 chr19:26968113-26968213 0.00023 15_[+3]_77 chr5:9055968-9056068 0.00027 7_[-3]_85 chr11:84642119-84642219 0.00034 4_[+3]_88 chr6:8627315-8627415 0.00034 82_[-3]_10 chr17:59421754-59421854 0.00036 28_[+3]_64 chr3:18625440-18625540 0.00036 18_[+3]_74 chr2:127182672-127182772 0.00036 25_[+3]_67 chr4:108914335-108914435 0.00039 88_[+3]_4 chr8:10448504-10448604 0.00039 81_[+3]_11 chr12:80213698-80213798 0.00039 68_[+3]_24 chr18:24953392-24953492 0.00039 48_[-3]_44 chr10:105489665-10548976 0.00039 58_[-3]_34 chr19:33226935-33227035 0.00042 13_[-3]_79 chr3:18670294-18670394 0.00042 23_[-3]_69 chr9:122629082-122629182 0.00045 33_[-3]_59 chr17:63303884-63303984 0.00048 65_[-3]_27 chr1:33932867-33932967 0.00084 15_[+3]_77 chr1:161170618-161170718 0.00084 11_[+3]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGCTGTG width=8 seqs=136 chr15:58588993-58589093 ( 57) CAGCTGTG 1 chr8:84456815-84456915 ( 15) CAGCTGTG 1 chr1:143903880-143903980 ( 88) CAGCTGTG 1 chr18:87121234-87121334 ( 70) CAGCTGTG 1 chr9:29316787-29316887 ( 45) CAGCTGTG 1 chr17:64901414-64901514 ( 2) CAGCTGTG 1 chr5:57898992-57899092 ( 54) CAGCTGTG 1 chr9:103867760-103867860 ( 4) CAGCTGTG 1 chr14:105416903-10541700 ( 21) CAGCTGTG 1 chr9:42764782-42764882 ( 48) CAGCTGTG 1 chr6:67725515-67725615 ( 81) CAGCTGTG 1 chr3:137821863-137821963 ( 34) CAGCTGTG 1 chr1:97640406-97640506 ( 33) CAGCTGTG 1 chr6:33891898-33891998 ( 25) CAGCTGTG 1 chr11:88132096-88132196 ( 20) CAGCTGTG 1 chr9:20702034-20702134 ( 5) CAGCTGTG 1 chr18:23461056-23461156 ( 30) CAGCTGTG 1 chr13:28758934-28759034 ( 80) CAGCTGTG 1 chr8:8354914-8355014 ( 24) CAGCTGTG 1 chr8:52704001-52704101 ( 83) CAGCTGTG 1 chr13:52278733-52278833 ( 44) CAGCTGTG 1 chr8:33468443-33468543 ( 52) CAGCTGTG 1 chr13:25982146-25982246 ( 3) CTGCTGTG 1 chr10:41830833-41830933 ( 22) CTGCTGTG 1 chr8:12126152-12126252 ( 90) CTGCTGTG 1 chr18:26104223-26104323 ( 38) CTGCTGTG 1 chr17:8468671-8468771 ( 78) CTGCTGTG 1 chr6:135951582-135951682 ( 87) CTGCTGTG 1 chr10:74053021-74053121 ( 48) CTGCTGTG 1 chr3:129614033-129614133 ( 66) CTGCTGTG 1 chr12:7191834-7191934 ( 2) CTGCTGTG 1 chr13:47319552-47319652 ( 47) CAGCTGGG 1 chr6:53449018-53449118 ( 63) CAGCTGGG 1 chr1:142982908-142983008 ( 41) CAGCTGGG 1 chr2:30712000-30712100 ( 80) CAGCTGGG 1 chr2:42470285-42470385 ( 55) CAGCTGGG 1 chr1:188093550-188093650 ( 81) CAGCTGGG 1 chr5:14325756-14325856 ( 21) CAGCTGGG 1 chr18:75660004-75660104 ( 32) CAGCTGGG 1 chr17:5813875-5813975 ( 70) CAGCTGGG 1 chr13:30628371-30628471 ( 34) CAGCTGGG 1 chr13:113269746-11326984 ( 7) CAGCTGCG 1 chr4:120023966-120024066 ( 87) CAGCTGCG 1 chr12:105962609-10596270 ( 69) CAGCTGCG 1 chr6:77871380-77871480 ( 56) CAGCTGGG 1 chr12:100421534-10042163 ( 92) CAGCTGGG 1 chr13:114009789-11400988 ( 88) CAGCTCTG 1 chr14:60125179-60125279 ( 93) CAGCTCTG 1 chr17:30117861-30117961 ( 26) CAGCTCTG 1 chr4:87109614-87109714 ( 20) CAGCTCTG 1 chr13:112188151-11218825 ( 80) CAGCTCTG 1 chr2:5249841-5249941 ( 34) CAGCTCTG 1 chr12:29760394-29760494 ( 47) CAGCTCTG 1 chr3:144617580-144617680 ( 89) CAGCTCTG 1 chr5:129300395-129300495 ( 76) CAGCTCTG 1 chr2:55280839-55280939 ( 16) CAGCTCTG 1 chr18:38087186-38087286 ( 41) CATCTGTG 1 chr2:68435724-68435824 ( 9) CATCTGTG 1 chr12:55273697-55273797 ( 11) CATCTGTG 1 chr10:126664606-12666470 ( 62) CATCTGTG 1 chr10:111543489-11154358 ( 52) CATCTGTG 1 chr13:47157410-47157510 ( 58) CATCTGTG 1 chr16:42032064-42032164 ( 68) CATCTGTG 1 chr5:13551960-13552060 ( 17) CATCTGTG 1 chr9:77486864-77486964 ( 37) CATCTGTG 1 chr16:14237196-14237296 ( 75) CATCTGTG 1 chr12:56404801-56404901 ( 39) CATCTGTG 1 chr17:12187694-12187794 ( 83) CTGCTGGG 1 chr17:86582274-86582374 ( 26) CTGCTGGG 1 chr17:29459483-29459583 ( 54) GAGCTGTG 1 chr3:79114581-79114681 ( 85) CTGCTGGG 1 chr15:77257312-77257412 ( 71) CTGCTGGG 1 chr14:46967677-46967777 ( 55) CTGCTGCG 1 chr6:21591938-21592038 ( 24) GAGCTGTG 1 chr7:37564576-37564676 ( 5) CTGCTGGG 1 chr15:25882104-25882204 ( 50) GAGCTGTG 1 chr2:136351683-136351783 ( 38) CTGCTGCG 1 chr19:58018622-58018722 ( 91) CTGCTGGG 1 chr15:77196233-77196333 ( 62) CTGCTGGG 1 chr8:79083349-79083449 ( 6) CTGCTGCG 1 chr10:20854883-20854983 ( 42) GAGCTGTG 1 chr2:104208343-104208443 ( 25) GAGCTGTG 1 chr15:41193181-41193281 ( 66) CTGCTCTG 1 chr19:24054787-24054887 ( 51) CTGCTCTG 1 chr6:18711170-18711270 ( 77) CTGCTCTG 1 chr19:47348487-47348587 ( 22) CTGCTCTG 1 chr15:38177331-38177431 ( 31) CTGCTCTG 1 chr2:168626220-168626320 ( 38) CTGCTCTG 1 chr19:58059546-58059646 ( 17) CTGCTCTG 1 chr11:9731640-9731740 ( 29) CTGCTCTG 1 chr7:75008447-75008547 ( 32) CTTCTGTG 1 chr2:146745724-146745824 ( 5) CTTCTGTG 1 chr3:85465569-85465669 ( 64) CTTCTGTG 1 chr15:62039517-62039617 ( 19) CTTCTGTG 1 chr16:6946160-6946260 ( 12) CTTCTGTG 1 chr2:107973500-107973600 ( 83) CTTCTGTG 1 chr16:77644291-77644391 ( 10) CTTCTGTG 1 chr12:29187550-29187650 ( 4) CTTCTGTG 1 chr8:14474812-14474912 ( 58) CTTCTGTG 1 chr2:92278599-92278699 ( 53) GTGCTGTG 1 chr10:117094808-11709490 ( 39) GTGCTGTG 1 chr12:29083814-29083914 ( 27) GTGCTGTG 1 chr16:49908263-49908363 ( 65) GTGCTGTG 1 chr5:88973842-88973942 ( 63) GTGCTGTG 1 chr10:8111687-8111787 ( 65) GTGCTGTG 1 chr14:78900811-78900911 ( 79) GTGCTGTG 1 chr8:44767228-44767328 ( 87) GTGCTGTG 1 chr9:13543134-13543234 ( 26) GTGCTGTG 1 chr9:118003148-118003248 ( 46) GTGCTGTG 1 chr15:81128088-81128188 ( 57) CGGCTGTG 1 chrX:99216454-99216554 ( 85) CAGCTCCG 1 chr10:85466758-85466858 ( 5) CAGCTCGG 1 chr15:32418511-32418611 ( 31) CAGCTCCG 1 chr2:117180438-117180538 ( 53) CAGCTCCG 1 chr19:56423609-56423709 ( 22) CAGCTCGG 1 chr3:103496102-103496202 ( 48) CATCTGCG 1 chr3:107357125-107357225 ( 27) CATCTGCG 1 chr2:30707958-30708058 ( 52) GAGCTGCG 1 chr19:26968113-26968213 ( 16) GAGCTGCG 1 chr5:9055968-9056068 ( 8) CTGCTCCG 1 chr11:84642119-84642219 ( 5) GTGCTGCG 1 chr6:8627315-8627415 ( 83) GTGCTGCG 1 chr17:59421754-59421854 ( 29) GTGCTCTG 1 chr3:18625440-18625540 ( 19) CCGCTGTG 1 chr2:127182672-127182772 ( 26) CCGCTGTG 1 chr4:108914335-108914435 ( 89) GTTCTGTG 1 chr8:10448504-10448604 ( 82) CAGCTGTA 1 chr12:80213698-80213798 ( 69) CAGCTGTA 1 chr18:24953392-24953492 ( 49) CAGCTGTA 1 chr10:105489665-10548976 ( 59) CAGCTGTA 1 chr19:33226935-33227035 ( 14) CTGCTGTA 1 chr3:18670294-18670394 ( 24) CGGCTGCG 1 chr9:122629082-122629182 ( 34) CGTCTGTG 1 chr17:63303884-63303984 ( 66) CATCTCCG 1 chr1:33932867-33932967 ( 16) CGTCTGCG 1 chr1:161170618-161170718 ( 12) CGTCTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 9.47317 E= 6.5e-007 -1373 190 -55 -1373 105 -394 -262 48 -1373 -1373 182 -46 -1373 214 -1373 -1373 -1373 -1373 -1373 187 -1373 -25 184 -1373 -1373 -62 -55 135 -289 -1373 209 -1373 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 136 E= 6.5e-007 0.000000 0.845588 0.154412 0.000000 0.566176 0.014706 0.036765 0.382353 0.000000 0.000000 0.801471 0.198529 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.191176 0.808824 0.000000 0.000000 0.147059 0.154412 0.698529 0.036765 0.000000 0.963235 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCTGTG MEME-3 regular expression -------------------------------------------------------------------------------- C[AT]GCTGTG -------------------------------------------------------------------------------- Time 1409.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACRCACACACACDCACDC MEME-4 width = 21 sites = 16 llr = 260 E-value = 1.1e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACRCACACACACDCACDC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:81618292818:4:9:4: pos.-specific C a:918:9:71718:8181619 probability G :::1:3121:11:::31:331 matrix T ::1:21:::1:122321123: bits 2.1 * 1.9 ** 1.7 ** 1.5 *** * * Relative 1.3 *** ** * * ** * Entropy 1.1 ***** ** * *** ** * (23.5 bits) 0.9 *************** ** * 0.6 *************** *** * 0.4 *************** *** * 0.2 *************** *** * 0.0 --------------------- Multilevel CACACACACACACACACACAC consensus G TG GG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACRCACACACACDCACDC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr11:84642119-84642219 + 67 3.47e-13 CGCGCGCGca cacacacacacacacacacac acacacacac chr14:12571681-12571781 + 72 3.47e-13 cacacaaaca cacacacacacacacgcacac acacacac chr16:92954393-92954493 + 80 1.27e-12 TGTGCGTGca cacacgcacacacacacacac chr12:102064880-10206498 - 43 2.50e-12 AGAGGGTTTC CACACACACACACACACACCC AGAGTTTCCA chr6:53022043-53022143 - 49 7.48e-10 AGTCACCAAT CACACACACACACTTTCAGAC TTCAGGACCC chr1:175303241-175303341 + 78 9.51e-09 catgatgcaa cacacacacacacacattgtc tg chr11:30720843-30720943 + 14 1.36e-08 TTTTAAATAG CACATACAATCACACCCACTC TTCTTTTCAC chr14:45561644-45561744 + 76 1.93e-08 CAGAGTGACT CACACGAGCACACTCCCACGC AATT chr17:69201082-69201182 - 68 2.71e-08 TACCCTACGC CACATGCGCACATATGCATAC GTGTGCATAC chr10:40751071-40751171 + 45 4.41e-08 cgcacgcagg cacgcacgcaggcacgcaggc acgcacgcac chr4:9399577-9399677 + 45 8.15e-08 CTGGCTCTGG CATACTCACACACATTCACTG AAGCAAAAGA chr2:168626220-168626320 - 47 1.17e-07 GCTGGGCCAG CACACACAGAGCCACGGAGCC TCTGCTCTGC chr15:12247338-12247438 + 80 3.69e-07 gaatctgtgc caccagcacccaaacacacgc chr15:68810392-68810492 + 19 5.33e-07 GAGCCCGAGA CATGTACAAAAATACACATAC ATTATGTGAC chr17:73263006-73263106 - 17 9.01e-07 ACAGCGTAAC CACACACAAAATCATTCCCGG TGACTCAGGC chr10:119564215-11956431 - 50 1.55e-06 TCAACTACGC CACACGGAGAAATTCGGATTC GGAAGCTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACRCACACACACDCACDC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:84642119-84642219 3.5e-13 66_[+4]_13 chr14:12571681-12571781 3.5e-13 71_[+4]_8 chr16:92954393-92954493 1.3e-12 79_[+4] chr12:102064880-10206498 2.5e-12 42_[-4]_37 chr6:53022043-53022143 7.5e-10 48_[-4]_31 chr1:175303241-175303341 9.5e-09 77_[+4]_2 chr11:30720843-30720943 1.4e-08 13_[+4]_66 chr14:45561644-45561744 1.9e-08 75_[+4]_4 chr17:69201082-69201182 2.7e-08 67_[-4]_12 chr10:40751071-40751171 4.4e-08 44_[+4]_35 chr4:9399577-9399677 8.2e-08 44_[+4]_35 chr2:168626220-168626320 1.2e-07 46_[-4]_33 chr15:12247338-12247438 3.7e-07 79_[+4] chr15:68810392-68810492 5.3e-07 18_[+4]_61 chr17:73263006-73263106 9e-07 16_[-4]_63 chr10:119564215-11956431 1.5e-06 49_[-4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACRCACACACACDCACDC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACRCACACACACDCACDC width=21 seqs=16 chr11:84642119-84642219 ( 67) CACACACACACACACACACAC 1 chr14:12571681-12571781 ( 72) CACACACACACACACGCACAC 1 chr16:92954393-92954493 ( 80) CACACGCACACACACACACAC 1 chr12:102064880-10206498 ( 43) CACACACACACACACACACCC 1 chr6:53022043-53022143 ( 49) CACACACACACACTTTCAGAC 1 chr1:175303241-175303341 ( 78) CACACACACACACACATTGTC 1 chr11:30720843-30720943 ( 14) CACATACAATCACACCCACTC 1 chr14:45561644-45561744 ( 76) CACACGAGCACACTCCCACGC 1 chr17:69201082-69201182 ( 68) CACATGCGCACATATGCATAC 1 chr10:40751071-40751171 ( 45) CACGCACGCAGGCACGCAGGC 1 chr4:9399577-9399677 ( 45) CATACTCACACACATTCACTG 1 chr2:168626220-168626320 ( 47) CACACACAGAGCCACGGAGCC 1 chr15:12247338-12247438 ( 80) CACCAGCACCCAAACACACGC 1 chr15:68810392-68810492 ( 19) CATGTACAAAAATACACATAC 1 chr17:73263006-73263106 ( 17) CACACACAAAATCATTCCCGG 1 chr10:119564215-11956431 ( 50) CACACGGAGAAATTCGGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACRCACACACACDCACDC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 12.2874 E= 1.1e-007 -1064 214 -1064 -1064 187 -1064 -1064 -1064 -1064 195 -1064 -113 157 -186 -86 -1064 -213 173 -1064 -54 119 -1064 46 -213 -213 195 -186 -1064 157 -1064 -27 -1064 -54 160 -86 -1064 168 -186 -1064 -213 -54 160 -86 -1064 157 -186 -186 -213 -213 173 -1064 -54 157 -1064 -1064 -54 -1064 173 -1064 -13 46 -86 46 -54 -1064 184 -86 -213 168 -186 -1064 -213 -1064 131 14 -54 46 -86 14 -13 -1064 195 -86 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACRCACACACACDCACDC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 16 E= 1.1e-007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.812500 0.062500 0.125000 0.000000 0.062500 0.750000 0.000000 0.187500 0.625000 0.000000 0.312500 0.062500 0.062500 0.875000 0.062500 0.000000 0.812500 0.000000 0.187500 0.000000 0.187500 0.687500 0.125000 0.000000 0.875000 0.062500 0.000000 0.062500 0.187500 0.687500 0.125000 0.000000 0.812500 0.062500 0.062500 0.062500 0.062500 0.750000 0.000000 0.187500 0.812500 0.000000 0.000000 0.187500 0.000000 0.750000 0.000000 0.250000 0.375000 0.125000 0.312500 0.187500 0.000000 0.812500 0.125000 0.062500 0.875000 0.062500 0.000000 0.062500 0.000000 0.562500 0.250000 0.187500 0.375000 0.125000 0.250000 0.250000 0.000000 0.875000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACRCACACACACDCACDC MEME-4 regular expression -------------------------------------------------------------------------------- CACAC[AG]CACACACA[CT][AG]CA[CG][AGT]C -------------------------------------------------------------------------------- Time 1827.00 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGNCWYCTGCWGMCWKKGSC MEME-5 width = 21 sites = 7 llr = 133 E-value = 1.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGNCWYCTGCWGMCWKKGSC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :7:3:6:::::3:3:6::::1 pos.-specific C a::3a169:1a::6a:1:169 probability G ::a3::11:9:1a:::4674: matrix T :3:1:33:a::6:1:4441:: bits 2.1 * * * * * * 1.9 * * * * * * * 1.7 * * * * * * * 1.5 * * * **** * * * Relative 1.3 * * * **** * * * Entropy 1.1 *** * **** * * * ** (27.4 bits) 0.9 *** * **** * ** **** 0.6 *** * ***** ********* 0.4 *** ***************** 0.2 *** ***************** 0.0 --------------------- Multilevel CAGACACCTGCTGCCAGGGCC consensus T C TT A A TTT G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGNCWYCTGCWGMCWKKGSC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr9:29472175-29472275 - 32 6.85e-11 AGGGAGGCCA CAGGCTGCTGCTGCCAGGGCC CCCGTGCTGG chr6:82863459-82863559 + 56 9.23e-11 GAGCCCAACA CAGCCCTCTGCTGCCATGGCC TGGCACAGGC chr2:138475782-138475882 + 2 3.57e-10 A CAGACATCTGCAGACAGTGCC TTCTTCCGGA chr2:169849035-169849135 + 28 6.66e-10 GAGTGGCAGT CAGCCACCTGCAGCCTTTCGC GTGAGCACCC chr9:20702034-20702134 - 66 8.83e-10 CACTAGCCAT CAGTCACCTGCTGCCTGTGGA GCTGAGGGTG chrX:99216454-99216554 + 60 4.57e-09 CGGGCTTTGT CTGGCACCTCCGGTCATGGCC CTTGCGGAGC chr2:54567562-54567662 - 1 1.84e-08 GCCACATCGG CTGACTCGTGCTGACTCGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGNCWYCTGCWGMCWKKGSC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:29472175-29472275 6.8e-11 31_[-5]_48 chr6:82863459-82863559 9.2e-11 55_[+5]_24 chr2:138475782-138475882 3.6e-10 1_[+5]_78 chr2:169849035-169849135 6.7e-10 27_[+5]_52 chr9:20702034-20702134 8.8e-10 65_[-5]_14 chrX:99216454-99216554 4.6e-09 59_[+5]_20 chr2:54567562-54567662 1.8e-08 [-5]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGNCWYCTGCWGMCWKKGSC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGNCWYCTGCWGMCWKKGSC width=21 seqs=7 chr9:29472175-29472275 ( 32) CAGGCTGCTGCTGCCAGGGCC 1 chr6:82863459-82863559 ( 56) CAGCCCTCTGCTGCCATGGCC 1 chr2:138475782-138475882 ( 2) CAGACATCTGCAGACAGTGCC 1 chr2:169849035-169849135 ( 28) CAGCCACCTGCAGCCTTTCGC 1 chr9:20702034-20702134 ( 66) CAGTCACCTGCTGCCTGTGGA 1 chrX:99216454-99216554 ( 60) CTGGCACCTCCGGTCATGGCC 1 chr2:54567562-54567662 ( 1) CTGACTCGTGCTGACTCGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGNCWYCTGCWGMCWKKGSC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.7225 E= 1.6e+005 -945 214 -945 -945 138 -945 -945 6 -945 -945 214 -945 6 33 33 -93 -945 214 -945 -945 106 -66 -945 6 -945 133 -66 6 -945 192 -66 -945 -945 -945 -945 187 -945 -66 192 -945 -945 214 -945 -945 6 -945 -66 106 -945 -945 214 -945 6 133 -945 -93 -945 214 -945 -945 106 -945 -945 65 -945 -66 92 65 -945 -945 133 65 -945 -66 165 -93 -945 133 92 -945 -93 192 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGNCWYCTGCWGMCWKKGSC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 7 E= 1.6e+005 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.285714 0.285714 0.285714 0.142857 0.000000 1.000000 0.000000 0.000000 0.571429 0.142857 0.000000 0.285714 0.000000 0.571429 0.142857 0.285714 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.142857 0.571429 0.000000 0.000000 1.000000 0.000000 0.285714 0.571429 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.000000 0.428571 0.000000 0.142857 0.428571 0.428571 0.000000 0.000000 0.571429 0.428571 0.000000 0.142857 0.714286 0.142857 0.000000 0.571429 0.428571 0.000000 0.142857 0.857143 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGNCWYCTGCWGMCWKKGSC MEME-5 regular expression -------------------------------------------------------------------------------- C[AT]G[ACG]C[AT][CT]CTGC[TA]G[CA]C[AT][GT][GT]G[CG]C -------------------------------------------------------------------------------- Time 2239.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG MEME-6 width = 30 sites = 8 llr = 169 E-value = 1.0e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG MEME-6 Description -------------------------------------------------------------------------------- Simplified A :1::::::::3113:3:::1:311::1::: pos.-specific C 9144:636146:61:433::a15146183: probability G 116:a114:6131:83:439::4363:31a matrix T :6:6:36:9::61631848::6:5:18:6: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 * * ** * Relative 1.3 * * * *** * ** * * * Entropy 1.1 * *** *** * * *** * * * (30.4 bits) 0.9 * **** **** * * *** **** * 0.6 * ********** ** * ***** ****** 0.4 *************** ******* ****** 0.2 ****************************** 0.0 ------------------------------ Multilevel CTGTGCTCTGCTCTGCTGTGCTCTGCTCTG consensus CC TCG CAG ATACTG AGGCG GC sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr15:31175843-31175943 + 3 2.73e-17 tg ctctgctctgctctgctctgctctgctctg ctctgctctg chr9:70622755-70622855 + 1 3.19e-14 . ctgtgctgtgctgtgctgtgctgtgctgtg ctgtcctgtg chr11:93273846-93273946 - 5 2.42e-10 GTGCTAGTGG CTCTGTTCTCAAATGCTGTGCTCAGCACTG GCTA chr1:58652518-58652618 + 47 3.07e-10 TCCCCGGCCA CTGTGCCGTGCGCATACTTGCCCGGCCCCG GAGGTCGCTG chr18:8478111-8478211 + 61 5.17e-10 ttccggtctg gtccggtctggtccggtctgcactggtccg gtcCTCACTC chr13:47319552-47319652 + 1 6.40e-10 . CAGCGTCCTCCTTTTGTTGGCTGCCCTCTG ATTGCAGCTA chr11:109331234-10933133 - 23 2.54e-09 AAAGTGAGCT CGGCGCTGCCAGCTGATTGGCTGGCGTGGG TTCCAAGTGC chr2:72324246-72324346 - 24 3.00e-09 GTAATGTTTT CCGTGCGCTGCTCAGTCGTACAATCTTCTG CAGCTGCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:31175843-31175943 2.7e-17 2_[+6]_68 chr9:70622755-70622855 3.2e-14 [+6]_70 chr11:93273846-93273946 2.4e-10 4_[-6]_66 chr1:58652518-58652618 3.1e-10 46_[+6]_24 chr18:8478111-8478211 5.2e-10 60_[+6]_10 chr13:47319552-47319652 6.4e-10 [+6]_70 chr11:109331234-10933133 2.5e-09 22_[-6]_48 chr2:72324246-72324346 3e-09 23_[-6]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG width=30 seqs=8 chr15:31175843-31175943 ( 3) CTCTGCTCTGCTCTGCTCTGCTCTGCTCTG 1 chr9:70622755-70622855 ( 1) CTGTGCTGTGCTGTGCTGTGCTGTGCTGTG 1 chr11:93273846-93273946 ( 5) CTCTGTTCTCAAATGCTGTGCTCAGCACTG 1 chr1:58652518-58652618 ( 47) CTGTGCCGTGCGCATACTTGCCCGGCCCCG 1 chr18:8478111-8478211 ( 61) GTCCGGTCTGGTCCGGTCTGCACTGGTCCG 1 chr13:47319552-47319652 ( 1) CAGCGTCCTCCTTTTGTTGGCTGCCCTCTG 1 chr11:109331234-10933133 ( 23) CGGCGCTGCCAGCTGATTGGCTGGCGTGGG 1 chr2:72324246-72324346 ( 24) CCGTGCGCTGCTCAGTCGTACAATCTTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 13.7004 E= 1.0e+007 -965 195 -86 -965 -113 -86 -86 119 -965 73 146 -965 -965 73 -965 119 -965 -965 214 -965 -965 146 -86 -13 -965 14 -86 119 -965 146 73 -965 -965 -86 -965 168 -965 73 146 -965 -13 146 -86 -965 -113 -965 14 119 -113 146 -86 -113 -13 -86 -965 119 -965 -965 173 -13 -13 73 14 -113 -965 14 -965 145 -965 14 73 46 -965 -965 14 145 -113 -965 195 -965 -965 214 -965 -965 -13 -86 -965 119 -113 114 73 -965 -113 -86 14 87 -965 73 146 -965 -965 146 14 -113 -113 -86 -965 145 -965 173 14 -965 -965 14 -86 119 -965 -965 214 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 8 E= 1.0e+007 0.000000 0.875000 0.125000 0.000000 0.125000 0.125000 0.125000 0.625000 0.000000 0.375000 0.625000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.125000 0.250000 0.000000 0.250000 0.125000 0.625000 0.000000 0.625000 0.375000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.375000 0.625000 0.000000 0.250000 0.625000 0.125000 0.000000 0.125000 0.000000 0.250000 0.625000 0.125000 0.625000 0.125000 0.125000 0.250000 0.125000 0.000000 0.625000 0.000000 0.000000 0.750000 0.250000 0.250000 0.375000 0.250000 0.125000 0.000000 0.250000 0.000000 0.750000 0.000000 0.250000 0.375000 0.375000 0.000000 0.000000 0.250000 0.750000 0.125000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.125000 0.000000 0.625000 0.125000 0.500000 0.375000 0.000000 0.125000 0.125000 0.250000 0.500000 0.000000 0.375000 0.625000 0.000000 0.000000 0.625000 0.250000 0.125000 0.125000 0.125000 0.000000 0.750000 0.000000 0.750000 0.250000 0.000000 0.000000 0.250000 0.125000 0.625000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSYGCTSTSCTCTGVTBTGCTSKSCTCTG MEME-6 regular expression -------------------------------------------------------------------------------- CT[GC][TC]G[CT][TC][CG]T[GC][CA][TG]C[TA][GT][CAG][TC][GTC][TG]GC[TA][CG][TG][GC][CG]T[CG][TC]G -------------------------------------------------------------------------------- Time 2646.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CNTCCCGHBSCYCYTSCAGCMCTGAGCAG MEME-7 width = 29 sites = 5 llr = 133 E-value = 7.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CNTCCCGHBSCYCYTSCAGCMCTGAGCAG MEME-7 Description -------------------------------------------------------------------------------- Simplified A :2:::2:4::2::::::a::6:::8:28: pos.-specific C 84:aa8:2248664:48:2a482::28:: probability G 222:::a:46::2:262:8::2:828:2a matrix T :28::::44::4268:::::::82::::: bits 2.1 ** * * * 1.9 ** * * * * 1.7 ** * * * * 1.5 * ** * **** * * * Relative 1.3 * ***** * * **** ******** Entropy 1.1 * ***** *** **************** (38.3 bits) 0.9 * ***** *** **************** 0.6 * ***** ******************** 0.4 * *************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel CCTCCCGAGGCCCTTGCAGCACTGAGCAG consensus GAG A TTCATGCGCG C CGCTGCAG sequence G CC T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNTCCCGHBSCYCYTSCAGCMCTGAGCAG MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr2:65471194-65471294 - 54 1.03e-14 ATGAAACCAT CCTCCAGCTGCTCCTGCAGCACTGAGCAG AGAGACGTGC chr6:131433520-131433620 - 19 2.82e-13 CTGACCACCG GCTCCCGAGGCCCTGGCAGCCCTGGGCGG CCTGTGCTAG chr18:68493806-68493906 + 33 9.78e-13 CTCAGGGTTG CTTCCCGTCCCCCTTGGAGCCCTGACAAG CAGTGACCTT chr9:13543134-13543234 + 66 1.05e-12 CGTCACATAG CATCCCGTGCATTCTCCACCACTGAGCAG AGAAAG chr18:65124667-65124767 + 72 2.92e-12 CGAAATGAGC CGGCCCGATGCCGTTCCAGCAGCTAGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNTCCCGHBSCYCYTSCAGCMCTGAGCAG MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:65471194-65471294 1e-14 53_[-7]_18 chr6:131433520-131433620 2.8e-13 18_[-7]_53 chr18:68493806-68493906 9.8e-13 32_[+7]_39 chr9:13543134-13543234 1.1e-12 65_[+7]_6 chr18:65124667-65124767 2.9e-12 71_[+7] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNTCCCGHBSCYCYTSCAGCMCTGAGCAG MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CNTCCCGHBSCYCYTSCAGCMCTGAGCAG width=29 seqs=5 chr2:65471194-65471294 ( 54) CCTCCAGCTGCTCCTGCAGCACTGAGCAG 1 chr6:131433520-131433620 ( 19) GCTCCCGAGGCCCTGGCAGCCCTGGGCGG 1 chr18:68493806-68493906 ( 33) CTTCCCGTCCCCCTTGGAGCCCTGACAAG 1 chr9:13543134-13543234 ( 66) CATCCCGTGCATTCTCCACCACTGAGCAG 1 chr18:65124667-65124767 ( 72) CGGCCCGATGCCGTTCCAGCAGCTAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNTCCCGHBSCYCYTSCAGCMCTGAGCAG MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 13.3282 E= 7.1e+003 -897 182 -18 -897 -45 82 -18 -45 -897 -897 -18 155 -897 214 -897 -897 -897 214 -897 -897 -45 182 -897 -897 -897 -897 214 -897 55 -18 -897 55 -897 -18 82 55 -897 82 140 -897 -45 182 -897 -897 -897 140 -897 55 -897 140 -18 -45 -897 82 -897 113 -897 -897 -18 155 -897 82 140 -897 -897 182 -18 -897 187 -897 -897 -897 -897 -18 182 -897 -897 214 -897 -897 113 82 -897 -897 -897 182 -18 -897 -897 -18 -897 155 -897 -897 182 -45 155 -897 -18 -897 -897 -18 182 -897 -45 182 -897 -897 155 -897 -18 -897 -897 -897 214 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNTCCCGHBSCYCYTSCAGCMCTGAGCAG MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 5 E= 7.1e+003 0.000000 0.800000 0.200000 0.000000 0.200000 0.400000 0.200000 0.200000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.200000 0.000000 0.400000 0.000000 0.200000 0.400000 0.400000 0.000000 0.400000 0.600000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.600000 0.200000 0.200000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.200000 0.800000 0.000000 0.400000 0.600000 0.000000 0.000000 0.800000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.800000 0.200000 0.800000 0.000000 0.200000 0.000000 0.000000 0.200000 0.800000 0.000000 0.200000 0.800000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CNTCCCGHBSCYCYTSCAGCMCTGAGCAG MEME-7 regular expression -------------------------------------------------------------------------------- [CG][CAGT][TG]CC[CA]G[ATC][GTC][GC][CA][CT][CGT][TC][TG][GC][CG]A[GC]C[AC][CG][TC][GT][AG][GC][CA][AG]G -------------------------------------------------------------------------------- Time 3043.93 secs. ******************************************************************************** ******************************************************************************** MOTIF MWCNDRCAYCYCCBCMMASYCMTCCTYCA MEME-8 width = 29 sites = 19 llr = 299 E-value = 3.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MWCNDRCAYCYCCBCMMASYCMTCCTYCA MEME-8 Description -------------------------------------------------------------------------------- Simplified A 53133515:22:11145712231:1:1:7 pos.-specific C 4:62118258367366515575269:4a3 probability G :12334:22:12:22::23::123::::: matrix T 16224:124:53341:::231252:a5:: bits 2.1 * 1.9 * * 1.7 ** * 1.5 * ** * Relative 1.3 * * ** * Entropy 1.1 * * ** * ** ** (22.7 bits) 0.9 ** * * *** * ** ** 0.6 ** ** ** ** **** ** ****** 0.4 *** ** ** ** ******* ******* 0.2 *** ************************* 0.0 ----------------------------- Multilevel ATCGTACACCTCCTCCAACCCCTCCTTCA consensus CATAGG GT CTTCGAC GT ACG C C sequence CA G T TG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWCNDRCAYCYCCBCMMASYCMTCCTYCA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr10:21398940-21399040 + 6 1.47e-12 TTCTC ATCCCACACCTCCTCCCATCCCTCCTCCA CACGGCTCAG chr18:41717431-41717531 + 24 7.05e-10 TGCTTAAAAA ATCGTGCCTCACTCCCAGCTCATCCTTCA TTCAGTACAA chr9:67632439-67632539 - 24 2.32e-09 GCGTTCCCTT CAGTAACACCCCCCCCCAACCCTGCTCCC CAGCACCGGG chr19:47348487-47348587 + 31 3.61e-09 GCAGAGCAGC CTGAAGCCTCCCTCCCCATCCTCCCTCCA GCCCGAAGCC chr11:20773852-20773952 - 62 4.02e-09 CTTTCTAGAC ATTATGCACCCTCTCAAACATCTGCTCCA GCAAAACATC chr4:46891368-46891468 - 8 4.48e-09 ACTGTCTGCT CACCTGCTTCTCCTCCACCACGTCCTTCA CACATCT chr12:29187550-29187650 + 40 1.13e-08 TTCATGCAAA CTCAAATACCGCAGCAAACTCCTCCTTCA GATTAATTAG chr4:125962674-125962774 + 18 1.37e-08 TACCACCTGC ATCCGACAGCTTCGGAAAGCCCCGATCCA TAGTGTGGGC chr10:23214077-23214177 - 35 1.50e-08 CTGAGTGGAC ATCTTAAAGCTCCTCCCACAAATGCTTCA CCTTCTTAAA chr3:143687327-143687427 + 33 3.14e-08 CATTCTTCCA AATGAACCTCTGCTCCAATCAAGCCTTCC TTCATGCTTA chr8:10812017-10812117 - 49 3.43e-08 CAGACCAAGT AGTGTGCGCCTCTGTCCAGTCCTGCTTCC TACTGAAAGG chr15:41193181-41193281 + 5 8.63e-08 CTCT CTAGAACGCCATTTAAAACTCCTCCTCCA GGAGGCAGTA chr3:137821863-137821963 + 43 8.63e-08 CCAGCTGTGC ATGCTCCTCCAGCCCCAAGCCAGTCTCCA GATCTGAAGG chr3:116315508-116315608 + 42 8.63e-08 TATCTGATTC ATCGTGTGCAGCCTGCAGCCCAGCCTTCC CTGAGCAATA chr18:75194721-75194821 + 38 1.09e-07 TTGTGTGTGC CATGGGCGTCCCTTCACAGTCTATCTTCA GACTGTCTTC chr12:12221141-12221241 + 59 1.09e-07 cctccctcca ttctgactccctcctccctccttcctcca tcctccctcc chr1:168197882-168197982 - 15 1.09e-07 ATACATGGTG CACAGACATATGCGGACAGCCTGCCTACA CACTATACAA chr15:35727754-35727854 + 71 1.48e-07 agtctgtatc agctgacatatccagaaacttccccttca c chr2:106355821-106355921 - 65 2.46e-07 TCCTGAG CACAGGCAGCTTCCCACGCCACCTATTCC CAGTGGTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWCNDRCAYCYCCBCMMASYCMTCCTYCA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:21398940-21399040 1.5e-12 5_[+8]_66 chr18:41717431-41717531 7e-10 23_[+8]_48 chr9:67632439-67632539 2.3e-09 23_[-8]_48 chr19:47348487-47348587 3.6e-09 30_[+8]_41 chr11:20773852-20773952 4e-09 61_[-8]_10 chr4:46891368-46891468 4.5e-09 7_[-8]_64 chr12:29187550-29187650 1.1e-08 39_[+8]_32 chr4:125962674-125962774 1.4e-08 17_[+8]_54 chr10:23214077-23214177 1.5e-08 34_[-8]_37 chr3:143687327-143687427 3.1e-08 32_[+8]_39 chr8:10812017-10812117 3.4e-08 48_[-8]_23 chr15:41193181-41193281 8.6e-08 4_[+8]_67 chr3:137821863-137821963 8.6e-08 42_[+8]_29 chr3:116315508-116315608 8.6e-08 41_[+8]_30 chr18:75194721-75194821 1.1e-07 37_[+8]_34 chr12:12221141-12221241 1.1e-07 58_[+8]_13 chr1:168197882-168197982 1.1e-07 14_[-8]_57 chr15:35727754-35727854 1.5e-07 70_[+8]_1 chr2:106355821-106355921 2.5e-07 64_[-8]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWCNDRCAYCYCCBCMMASYCMTCCTYCA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MWCNDRCAYCYCCBCMMASYCMTCCTYCA width=29 seqs=19 chr10:21398940-21399040 ( 6) ATCCCACACCTCCTCCCATCCCTCCTCCA 1 chr18:41717431-41717531 ( 24) ATCGTGCCTCACTCCCAGCTCATCCTTCA 1 chr9:67632439-67632539 ( 24) CAGTAACACCCCCCCCCAACCCTGCTCCC 1 chr19:47348487-47348587 ( 31) CTGAAGCCTCCCTCCCCATCCTCCCTCCA 1 chr11:20773852-20773952 ( 62) ATTATGCACCCTCTCAAACATCTGCTCCA 1 chr4:46891368-46891468 ( 8) CACCTGCTTCTCCTCCACCACGTCCTTCA 1 chr12:29187550-29187650 ( 40) CTCAAATACCGCAGCAAACTCCTCCTTCA 1 chr4:125962674-125962774 ( 18) ATCCGACAGCTTCGGAAAGCCCCGATCCA 1 chr10:23214077-23214177 ( 35) ATCTTAAAGCTCCTCCCACAAATGCTTCA 1 chr3:143687327-143687427 ( 33) AATGAACCTCTGCTCCAATCAAGCCTTCC 1 chr8:10812017-10812117 ( 49) AGTGTGCGCCTCTGTCCAGTCCTGCTTCC 1 chr15:41193181-41193281 ( 5) CTAGAACGCCATTTAAAACTCCTCCTCCA 1 chr3:137821863-137821963 ( 43) ATGCTCCTCCAGCCCCAAGCCAGTCTCCA 1 chr3:116315508-116315608 ( 42) ATCGTGTGCAGCCTGCAGCCCAGCCTTCC 1 chr18:75194721-75194821 ( 38) CATGGGCGTCCCTTCACAGTCTATCTTCA 1 chr12:12221141-12221241 ( 59) TTCTGACTCCCTCCTCCCTCCTTCCTCCA 1 chr1:168197882-168197982 ( 15) CACAGACATATGCGGACAGCCTGCCTACA 1 chr15:35727754-35727854 ( 71) AGCTGACATATCCAGAAACTTCCCCTTCA 1 chr2:106355821-106355921 ( 65) CACAGGCAGCTTCCCACGCCACCTATTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWCNDRCAYCYCCBCMMASYCMTCCTYCA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.3451 E= 3.7e+001 94 89 -1089 -237 21 -1089 -111 108 -237 135 -52 -38 -6 -11 48 -38 -6 -210 48 43 94 -210 89 -1089 -237 189 -1089 -138 79 -52 -11 -79 -1089 106 -52 43 -79 189 -1089 -1089 -79 22 -111 79 -1089 135 -52 -6 -237 159 -1089 -6 -237 48 -11 62 -237 148 -11 -138 62 135 -1089 -1089 94 106 -1089 -1089 143 -111 -52 -1089 -237 106 22 -38 -79 122 -1089 21 -79 170 -1089 -138 -6 106 -210 -38 -237 -11 -11 94 -1089 135 22 -79 -138 198 -1089 -1089 -1089 -1089 -1089 187 -237 89 -1089 94 -1089 214 -1089 -1089 143 22 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWCNDRCAYCYCCBCMMASYCMTCCTYCA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 19 E= 3.7e+001 0.526316 0.421053 0.000000 0.052632 0.315789 0.000000 0.105263 0.578947 0.052632 0.578947 0.157895 0.210526 0.263158 0.210526 0.315789 0.210526 0.263158 0.052632 0.315789 0.368421 0.526316 0.052632 0.421053 0.000000 0.052632 0.842105 0.000000 0.105263 0.473684 0.157895 0.210526 0.157895 0.000000 0.473684 0.157895 0.368421 0.157895 0.842105 0.000000 0.000000 0.157895 0.263158 0.105263 0.473684 0.000000 0.578947 0.157895 0.263158 0.052632 0.684211 0.000000 0.263158 0.052632 0.315789 0.210526 0.421053 0.052632 0.631579 0.210526 0.105263 0.421053 0.578947 0.000000 0.000000 0.526316 0.473684 0.000000 0.000000 0.736842 0.105263 0.157895 0.000000 0.052632 0.473684 0.263158 0.210526 0.157895 0.526316 0.000000 0.315789 0.157895 0.736842 0.000000 0.105263 0.263158 0.473684 0.052632 0.210526 0.052632 0.210526 0.210526 0.526316 0.000000 0.578947 0.263158 0.157895 0.105263 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.052632 0.421053 0.000000 0.526316 0.000000 1.000000 0.000000 0.000000 0.736842 0.263158 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWCNDRCAYCYCCBCMMASYCMTCCTYCA MEME-8 regular expression -------------------------------------------------------------------------------- [AC][TA][CT][GACT][TGA][AG]C[AG][CT]C[TC][CT][CT][TCG][CG][CA][AC]A[CGT][CT]C[CAT][TCG][CG]CT[TC]C[AC] -------------------------------------------------------------------------------- Time 3438.45 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGGCTSCAGCAGG MEME-9 width = 15 sites = 19 llr = 251 E-value = 6.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGGCTSCAGCAGG MEME-9 Description -------------------------------------------------------------------------------- Simplified A 117::23::7::83: pos.-specific C 261:27:6a::8::3 probability G 83:a8114::a2267 matrix T ::3:::6::3:1:1: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 ** * * Relative 1.3 * ** * *** * Entropy 1.1 * *** ****** * (19.0 bits) 0.9 ****** ******** 0.6 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GCAGGCTCCAGCAGG consensus GT AG T GAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCTSCAGCAGG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr1:176239483-176239583 + 24 4.14e-09 ATGTGTGTGA gcaggctccagcaag caatcctcgt chr17:8626254-8626354 - 85 4.14e-09 A GCAGGCTCCAGCAAG CCAGCACTTA chr13:73032963-73033063 + 62 8.28e-09 GAAGATGGTG GCAGGCTCCAGGAGG ATGTGTGAGG chr6:33891898-33891998 - 43 6.08e-08 TGGCAGAGAA GCAGCCTGCAGCAGC TCCCACTGTA chr18:55548971-55549071 + 7 7.01e-08 TGGAGA GCAGGGACCAGCAGG CTGTCTGCGT chr3:69897831-69897931 + 6 1.92e-07 ctacc ggaggatccagcaag acctctGGTA chr18:38087186-38087286 - 52 2.40e-07 CTCCCATTCA GCAGGCGGCTGCAGC CCACATCTGT chr6:103613113-103613213 + 79 2.70e-07 cggaggcggc ggtggcagcagcagc aacagta chr9:62475889-62475989 + 40 2.98e-07 GTCACAAGAT GCAGGCTGCAGTAGC AATAGACCTG chr12:29760394-29760494 - 2 3.84e-07 TGAAGTTAAT GGAGGGTGCTGCAGG A chr9:77486864-77486964 - 50 5.08e-07 TTAAGGACAG GCTGGATGCAGGAGG CCAGGCATCT chr19:56423609-56423709 - 73 6.68e-07 CTGCGCAGGA ACAGGCTCCAGCATG CTTGATTTAG chr5:9304225-9304325 - 16 9.21e-07 CTTGAGTCCT GCAGGAACCTGGAGG CAGAAACTGA chr15:25802103-25802203 + 28 9.90e-07 CGCTTTTCTG CCAGCCTCCAGCGAG TGTTGTTGGA chr13:113269746-11326984 - 25 1.16e-06 ACGTGTCTCT GGTGCCACCTGCAGG AAGTAGAGCG chr3:85214761-85214861 - 23 1.36e-06 GCAGAAACTC CCTGGCAGCTGCAGC ACTGCAGCAA chr2:107973500-107973600 + 59 1.81e-06 TGTCCCACTA GATGGCTCCAGCGTG TCTCTCCTGC chr1:175303241-175303341 + 49 1.81e-06 agtacgcaac caaggctgcagcgag ttcacatgat chr2:30707958-30708058 + 32 3.23e-06 gagcccgggc ggcggcgccagcggc cccgAGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCTSCAGCAGG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:176239483-176239583 4.1e-09 23_[+9]_62 chr17:8626254-8626354 4.1e-09 84_[-9]_1 chr13:73032963-73033063 8.3e-09 61_[+9]_24 chr6:33891898-33891998 6.1e-08 42_[-9]_43 chr18:55548971-55549071 7e-08 6_[+9]_79 chr3:69897831-69897931 1.9e-07 5_[+9]_80 chr18:38087186-38087286 2.4e-07 51_[-9]_34 chr6:103613113-103613213 2.7e-07 78_[+9]_7 chr9:62475889-62475989 3e-07 39_[+9]_46 chr12:29760394-29760494 3.8e-07 1_[-9]_84 chr9:77486864-77486964 5.1e-07 49_[-9]_36 chr19:56423609-56423709 6.7e-07 72_[-9]_13 chr5:9304225-9304325 9.2e-07 15_[-9]_70 chr15:25802103-25802203 9.9e-07 27_[+9]_58 chr13:113269746-11326984 1.2e-06 24_[-9]_61 chr3:85214761-85214861 1.4e-06 22_[-9]_63 chr2:107973500-107973600 1.8e-06 58_[+9]_27 chr1:175303241-175303341 1.8e-06 48_[+9]_37 chr2:30707958-30708058 3.2e-06 31_[+9]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCTSCAGCAGG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGGCTSCAGCAGG width=15 seqs=19 chr1:176239483-176239583 ( 24) GCAGGCTCCAGCAAG 1 chr17:8626254-8626354 ( 85) GCAGGCTCCAGCAAG 1 chr13:73032963-73033063 ( 62) GCAGGCTCCAGGAGG 1 chr6:33891898-33891998 ( 43) GCAGCCTGCAGCAGC 1 chr18:55548971-55549071 ( 7) GCAGGGACCAGCAGG 1 chr3:69897831-69897931 ( 6) GGAGGATCCAGCAAG 1 chr18:38087186-38087286 ( 52) GCAGGCGGCTGCAGC 1 chr6:103613113-103613213 ( 79) GGTGGCAGCAGCAGC 1 chr9:62475889-62475989 ( 40) GCAGGCTGCAGTAGC 1 chr12:29760394-29760494 ( 2) GGAGGGTGCTGCAGG 1 chr9:77486864-77486964 ( 50) GCTGGATGCAGGAGG 1 chr19:56423609-56423709 ( 73) ACAGGCTCCAGCATG 1 chr5:9304225-9304325 ( 16) GCAGGAACCTGGAGG 1 chr15:25802103-25802203 ( 28) CCAGCCTCCAGCGAG 1 chr13:113269746-11326984 ( 25) GGTGCCACCTGCAGG 1 chr3:85214761-85214861 ( 23) CCTGGCAGCTGCAGC 1 chr2:107973500-107973600 ( 59) GATGGCTCCAGCGTG 1 chr1:175303241-175303341 ( 49) CAAGGCTGCAGCGAG 1 chr2:30707958-30708058 ( 32) GGCGGCGCCAGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCTSCAGCAGG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 13.222 E= 6.0e-001 -237 -52 180 -1089 -138 148 22 -1089 132 -210 -1089 -6 -1089 -1089 214 -1089 -1089 -52 189 -1089 -79 170 -111 -1089 -6 -1089 -111 121 -1089 135 89 -1089 -1089 214 -1089 -1089 143 -1089 -1089 -6 -1089 -1089 214 -1089 -1089 180 -52 -237 153 -1089 -11 -1089 -6 -1089 148 -138 -1089 48 159 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCTSCAGCAGG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 19 E= 6.0e-001 0.052632 0.157895 0.789474 0.000000 0.105263 0.631579 0.263158 0.000000 0.684211 0.052632 0.000000 0.263158 0.000000 0.000000 1.000000 0.000000 0.000000 0.157895 0.842105 0.000000 0.157895 0.736842 0.105263 0.000000 0.263158 0.000000 0.105263 0.631579 0.000000 0.578947 0.421053 0.000000 0.000000 1.000000 0.000000 0.000000 0.736842 0.000000 0.000000 0.263158 0.000000 0.000000 1.000000 0.000000 0.000000 0.789474 0.157895 0.052632 0.789474 0.000000 0.210526 0.000000 0.263158 0.000000 0.631579 0.105263 0.000000 0.315789 0.684211 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCTSCAGCAGG MEME-9 regular expression -------------------------------------------------------------------------------- G[CG][AT]GGC[TA][CG]C[AT]GC[AG][GA][GC] -------------------------------------------------------------------------------- Time 3828.85 secs. ******************************************************************************** ******************************************************************************** MOTIF WGVTKYCMTTTYTAAAAWTAG MEME-10 width = 21 sites = 18 llr = 260 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-10 Description -------------------------------------------------------------------------------- Simplified A 52211124121::96996:a1 pos.-specific C ::4::46411:62:1:::1:: probability G :73:5::::1::1:::::::7 matrix T 5119452286947131149:2 bits 2.1 1.9 * 1.7 * 1.5 * ** ** Relative 1.3 * * * ** ** Entropy 1.1 * ** * ** ** (20.8 bits) 0.9 ** * * **** ****** 0.6 ** **** * *********** 0.4 ** ****** *********** 0.2 ********************* 0.0 --------------------- Multilevel AGCTGTCCTTTCTAAAAATAG consensus TAG TCTA A T T T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr6:34125244-34125344 - 39 4.93e-10 GAGTGCATGA TGCTTCCCTTTCTAAAATTAT CTGGGGTGCA chr13:117676507-11767660 + 48 1.07e-09 AATATGCTAC AGGTGCACTTTTTAAAATTAG GAAAACACGA chr19:20836037-20836137 + 42 1.14e-08 ATCCGTTCAA AGCTGTCACTTCCATAAATAG TAGATTGTAC chr18:46771209-46771309 - 66 1.28e-08 TTTATAGACA AAATGTACTTTTTAAAAATAG GTCTACAGAG chr15:93656687-93656787 + 15 1.28e-08 ATGTCCTATA TACTGTCTCTTCTAAAAATAG CCCGGCACAT chr4:120023966-120024066 + 20 2.74e-08 ACGGAAGAGC AGATGCTCAATCTAAAATTAG GCTGCTGACT chr2:149675656-149675756 - 16 3.04e-08 TATTTATAGC ATGTTCCATTTTCAAAAATAG CCCCGGCGCT chr16:14056611-14056711 - 80 6.66e-08 . AGATATACTATTTAAAATTAG AGTGCAGCAG chr1:68955653-68955753 - 43 8.76e-08 TTGGCCTCGA AAATGTCCTTTTGACAAATAG AGAAGCAATG chr13:53777976-53778076 + 80 1.05e-07 CAGAGATAAT TGTTGCCATTTCTAAAATCAT chr11:57598182-57598282 - 29 1.25e-07 TGGCTCTCTC TGCTTCTTTCTCTTAAAATAG CTGCCTTTCT chr5:64389237-64389337 + 67 1.36e-07 AGGAATGGCA TGGTTCTATTTCCTTAAATAG TGACTTGGGA chr14:99520241-99520341 - 72 2.06e-07 GCTGTAAT TGCTTTCTTGATTATAATTAG TTACAGTACT chr1:143903880-143903980 - 30 3.54e-07 ATTTCCTAGC AGGTGCCAAGTTTAAATATAG GATGCAAGGG chr3:159871982-159872082 + 22 3.81e-07 CAATGTTTGA TTGTGTCATTTCTAATAATAA GCTAGACAGA chr13:26745330-26745430 + 45 4.74e-07 CACCATATGA AGCTATCCTCACTATAATTAT TCTCATCCAT chr15:43244910-43245010 + 25 1.13e-06 AGGCTCTAAT TATATTTCTATCTATAAATAG ATATACAGTT chr18:59383179-59383279 - 29 1.44e-06 GGGTGCATTT TGCTTACATATCGACAATTAA GTCTATGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:34125244-34125344 4.9e-10 38_[-10]_41 chr13:117676507-11767660 1.1e-09 47_[+10]_32 chr19:20836037-20836137 1.1e-08 41_[+10]_38 chr18:46771209-46771309 1.3e-08 65_[-10]_14 chr15:93656687-93656787 1.3e-08 14_[+10]_65 chr4:120023966-120024066 2.7e-08 19_[+10]_60 chr2:149675656-149675756 3e-08 15_[-10]_64 chr16:14056611-14056711 6.7e-08 79_[-10] chr1:68955653-68955753 8.8e-08 42_[-10]_37 chr13:53777976-53778076 1e-07 79_[+10] chr11:57598182-57598282 1.2e-07 28_[-10]_51 chr5:64389237-64389337 1.4e-07 66_[+10]_13 chr14:99520241-99520341 2.1e-07 71_[-10]_8 chr1:143903880-143903980 3.5e-07 29_[-10]_50 chr3:159871982-159872082 3.8e-07 21_[+10]_58 chr13:26745330-26745430 4.7e-07 44_[+10]_35 chr15:43244910-43245010 1.1e-06 24_[+10]_55 chr18:59383179-59383279 1.4e-06 28_[-10]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGVTKYCMTTTYTAAAAWTAG width=21 seqs=18 chr6:34125244-34125344 ( 39) TGCTTCCCTTTCTAAAATTAT 1 chr13:117676507-11767660 ( 48) AGGTGCACTTTTTAAAATTAG 1 chr19:20836037-20836137 ( 42) AGCTGTCACTTCCATAAATAG 1 chr18:46771209-46771309 ( 66) AAATGTACTTTTTAAAAATAG 1 chr15:93656687-93656787 ( 15) TACTGTCTCTTCTAAAAATAG 1 chr4:120023966-120024066 ( 20) AGATGCTCAATCTAAAATTAG 1 chr2:149675656-149675756 ( 16) ATGTTCCATTTTCAAAAATAG 1 chr16:14056611-14056711 ( 80) AGATATACTATTTAAAATTAG 1 chr1:68955653-68955753 ( 43) AAATGTCCTTTTGACAAATAG 1 chr13:53777976-53778076 ( 80) TGTTGCCATTTCTAAAATCAT 1 chr11:57598182-57598282 ( 29) TGCTTCTTTCTCTTAAAATAG 1 chr5:64389237-64389337 ( 67) TGGTTCTATTTCCTTAAATAG 1 chr14:99520241-99520341 ( 72) TGCTTTCTTGATTATAATTAG 1 chr1:143903880-143903980 ( 30) AGGTGCCAAGTTTAAATATAG 1 chr3:159871982-159872082 ( 22) TTGTGTCATTTCTAATAATAA 1 chr13:26745330-26745430 ( 45) AGCTATCCTCACTATAATTAT 1 chr15:43244910-43245010 ( 25) TATATTTCTATCTATAAATAG 1 chr18:59383179-59383279 ( 29) TGCTTACATATCGACAATTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 12.2285 E= 3.7e+002 87 -1081 -1081 87 -30 -1081 156 -130 -30 78 29 -130 -230 -1081 -1081 179 -130 -1081 114 51 -230 97 -1081 87 -71 143 -1081 -30 51 97 -1081 -71 -130 -103 -1081 151 -30 -103 -103 102 -130 -1081 -1081 170 -1081 143 -1081 51 -1081 -44 -103 140 170 -1081 -1081 -130 116 -103 -1081 2 179 -1081 -1081 -230 179 -1081 -1081 -230 102 -1081 -1081 70 -1081 -203 -1081 179 187 -1081 -1081 -1081 -130 -1081 167 -71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 18 E= 3.7e+002 0.500000 0.000000 0.000000 0.500000 0.222222 0.000000 0.666667 0.111111 0.222222 0.388889 0.277778 0.111111 0.055556 0.000000 0.000000 0.944444 0.111111 0.000000 0.500000 0.388889 0.055556 0.444444 0.000000 0.500000 0.166667 0.611111 0.000000 0.222222 0.388889 0.444444 0.000000 0.166667 0.111111 0.111111 0.000000 0.777778 0.222222 0.111111 0.111111 0.555556 0.111111 0.000000 0.000000 0.888889 0.000000 0.611111 0.000000 0.388889 0.000000 0.166667 0.111111 0.722222 0.888889 0.000000 0.000000 0.111111 0.611111 0.111111 0.000000 0.277778 0.944444 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.055556 0.555556 0.000000 0.000000 0.444444 0.000000 0.055556 0.000000 0.944444 1.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.722222 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-10 regular expression -------------------------------------------------------------------------------- [AT][GA][CGA]T[GT][TC][CT][CA]T[TA]T[CT]TA[AT]AA[AT]TAG -------------------------------------------------------------------------------- Time 4198.68 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:107879603-107879703 9.74e-01 100 chr17:51204541-51204641 2.41e-02 100 chr6:117574123-117574223 8.85e-03 79_[+2(2.63e-06)] chr14:99894023-99894123 2.69e-05 43_[-4(1.39e-06)]_36 chr2:55280839-55280939 5.81e-01 15_[+3(5.72e-05)]_77 chr1:9174403-9174503 2.76e-01 100 chr12:7191834-7191934 5.72e-02 1_[+3(2.45e-05)]_91 chrX:73560546-73560646 1.25e-01 100 chr5:53366879-53366979 2.34e-01 100 chr15:43244910-43245010 3.00e-01 24_[+10(1.13e-06)]_55 chr15:24596185-24596285 3.46e-07 65_[+1(6.72e-07)]_21 chr2:72220792-72220892 4.34e-01 100 chr10:118569227-11856932 2.65e-03 56_[+5(5.88e-05)]_23 chr1:168197882-168197982 6.38e-04 14_[-8(1.09e-07)]_11_[-5(2.55e-05)]_\ 25 chr9:40743496-40743596 7.81e-03 61_[+2(5.46e-05)]_18 chr11:37140398-37140498 1.42e-01 100 chr2:104208343-104208443 4.04e-02 100 chr12:75101964-75102064 5.80e-02 24_[+4(7.59e-05)]_26_[+4(5.00e-05)]_\ 8 chr6:53022043-53022143 5.78e-06 3_[-1(7.99e-05)]_31_[-4(7.48e-10)]_\ 31 chr11:9731640-9731740 1.09e-01 100 chr3:17788210-17788310 9.12e-01 100 chr12:56404801-56404901 3.27e-09 11_[-4(3.98e-05)]_6_[-3(7.19e-05)]_\ 4_[-1(1.48e-08)]_36 chr1:21808984-21809084 2.24e-01 100 chr2:72324246-72324346 5.93e-06 23_[-6(3.00e-09)]_47 chr8:122953469-122953569 8.88e-01 100 chr14:106439254-10643935 1.16e-02 39_[+1(6.88e-08)]_47 chr8:14474812-14474912 2.12e-01 100 chr2:126362956-126363056 1.96e-05 41_[-1(2.90e-07)]_45 chr15:93656687-93656787 1.27e-03 14_[+10(1.28e-08)]_65 chr8:33468443-33468543 2.49e-03 49_[-3(1.23e-05)]_43 chr4:55651060-55651160 1.42e-07 30_[-5(3.69e-06)]_20_[+2(1.03e-05)]_\ 8 chr12:100421534-10042163 2.68e-03 54_[+5(7.07e-05)]_16_[-3(4.49e-05)]_\ 1 chr9:67632439-67632539 7.84e-12 23_[-8(2.32e-09)]_26_[+2(2.57e-08)]_\ 1 chr1:30637356-30637456 3.77e-01 100 chr10:83062270-83062370 4.00e-03 61_[+9(9.33e-05)]_24 chr7:136871958-136872058 6.04e-01 100 chr10:93681204-93681304 5.76e-01 100 chr5:54543522-54543622 2.19e-01 100 chr14:12571681-12571781 5.72e-05 71_[+4(3.47e-13)]_8 chr3:79004013-79004113 2.02e-01 100 chr16:67485654-67485754 9.91e-01 100 chr18:55133927-55134027 9.49e-01 100 chr14:59838408-59838508 1.60e-02 27_[-7(4.68e-05)]_44 chr16:90052883-90052983 1.98e-02 38_[-8(3.51e-05)]_33 chr3:120648319-120648419 2.13e-01 100 chr4:81564302-81564402 4.74e-04 24_[+1(3.04e-06)]_32_\ [+10(7.63e-06)]_9 chr5:129300395-129300495 1.22e-03 69_[-8(2.60e-05)]_2 chr6:77871380-77871480 3.19e-01 55_[-3(4.49e-05)]_37 chr14:66566525-66566625 9.19e-01 100 chr9:118003148-118003248 6.86e-02 78_[-5(3.83e-05)]_1 chr4:9399577-9399677 1.64e-04 13_[+2(3.95e-05)]_10_[+4(8.15e-08)]_\ 35 chr11:35589819-35589919 5.35e-02 [-5(7.73e-06)]_79 chr7:115388923-115389023 3.49e-02 10_[-2(1.65e-05)]_69 chr4:62991204-62991304 5.67e-04 62_[-2(1.37e-05)]_17 chr15:67220788-67220888 6.59e-02 6_[+2(9.31e-06)]_29_[+10(9.07e-05)]_\ 23 chr2:54567562-54567662 1.33e-04 [-5(1.84e-08)]_79 chr18:8478111-8478211 2.10e-07 60_[+6(5.17e-10)]_10 chr13:83987578-83987678 6.86e-01 100 chr9:23249972-23250072 2.06e-05 54_[-1(1.13e-06)]_32 chr13:52278733-52278833 5.20e-04 43_[+3(1.23e-05)]_18_[+1(1.29e-05)]_\ 17 chr19:56423609-56423709 8.50e-11 29_[-2(9.96e-10)]_22_[-9(6.68e-07)]_\ 13 chr3:80697565-80697665 9.41e-01 100 chr2:68148233-68148333 9.43e-02 100 chr18:69198275-69198375 9.71e-01 100 chr12:40657885-40657985 9.92e-01 100 chr10:20854883-20854983 1.61e-03 11_[-2(2.34e-06)]_68 chr13:100911911-10091201 9.92e-01 100 chr4:86953368-86953468 1.80e-02 25_[-1(7.99e-05)]_61 chr5:88958831-88958931 3.30e-03 69_[+2(1.31e-07)]_10 chr3:144617580-144617680 1.40e-01 28_[+5(9.22e-05)]_39_[-3(5.72e-05)]_\ 4 chr2:149675656-149675756 1.16e-02 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40_[+10(6.39e-05)]_39 chr5:66876825-66876925 7.78e-01 100 chr5:72041325-72041425 3.48e-01 58_[+10(7.04e-05)]_21 chr13:110151730-11015183 9.82e-01 100 chr9:29358491-29358591 1.61e-01 100 chr10:41830833-41830933 1.82e-03 21_[+3(2.45e-05)]_1_[+1(5.10e-06)]_\ 56 chr5:6786926-6787026 6.65e-01 100 chr17:73263006-73263106 1.43e-04 16_[-4(9.01e-07)]_21_[+2(1.65e-06)]_\ 21 chr4:104686327-104686427 1.53e-02 100 chr17:69201082-69201182 2.60e-03 32_[-4(4.25e-05)]_14_[-4(2.71e-08)]_\ 12 chr12:54489604-54489704 3.71e-01 76_[+9(9.69e-05)]_9 chr4:108914335-108914435 2.31e-01 100 chr1:169459285-169459385 6.98e-03 22_[+1(8.49e-05)]_45_[-1(5.55e-06)]_\ 5 chr17:75087276-75087376 5.54e-01 100 chr5:91843789-91843889 6.57e-01 100 chr1:143903880-143903980 4.37e-06 29_[-10(3.54e-07)]_37_\ [-3(1.23e-05)]_5 chr1:168188247-168188347 8.73e-03 12_[+1(2.32e-06)]_74 chr13:57347725-57347825 7.56e-01 100 chr16:14056611-14056711 4.44e-05 52_[-2(5.05e-05)]_6_[-10(6.66e-08)] chr15:81128088-81128188 2.00e-01 100 chr1:142891796-142891896 3.27e-02 100 chr18:75194721-75194821 3.08e-03 37_[+8(1.09e-07)]_16_[-1(9.55e-05)]_\ 4 chr11:35451529-35451629 3.36e-10 26_[+5(6.81e-07)]_2_[-1(3.52e-07)]_\ 37 chr4:85228480-85228580 8.09e-01 100 chr16:52392962-52393062 8.81e-01 100 chr7:75008447-75008547 7.93e-02 100 chr5:57785308-57785408 9.56e-01 100 chr18:34169135-34169235 9.54e-01 100 chr12:102064880-10206498 1.96e-05 42_[-4(2.50e-12)]_37 chr5:47014289-47014389 4.22e-06 50_[+1(1.48e-08)]_36 chr18:29993731-29993831 6.76e-03 100 chr18:63769241-63769341 8.46e-02 100 chr5:128482979-128483079 1.84e-04 66_[+2(2.63e-06)]_13 chr4:104455404-104455504 1.23e-04 75_[+5(3.05e-06)]_4 chr12:11757012-11757112 9.19e-01 100 chr1:164218566-164218666 1.04e-02 42_[+6(1.96e-05)]_28 chr18:38087186-38087286 5.16e-06 40_[-3(7.19e-05)]_3_[-9(2.40e-07)]_\ 34 chr15:68810392-68810492 3.40e-02 18_[+4(5.33e-07)]_61 chr4:57489111-57489211 7.85e-01 100 chr7:115473819-115473919 6.30e-01 100 chr4:153874121-153874221 1.49e-01 37_[-5(2.55e-05)]_42 chr9:32033783-32033883 7.60e-01 100 chr11:119774811-11977491 9.82e-01 100 chrX:99216454-99216554 8.03e-08 25_[-2(3.28e-06)]_13_[+5(4.57e-09)]_\ 20 chr12:29083814-29083914 5.21e-03 100 chr19:36677475-36677575 1.44e-02 71_[-7(4.18e-06)] chr8:84456815-84456915 1.65e-06 12_[-3(1.23e-05)]_21_[+2(7.63e-06)]_\ 9_[+8(5.53e-05)] chr4:149798019-149798119 1.29e-01 100 chr1:35495891-35495991 8.86e-02 78_[+9(8.04e-05)]_7 chr17:5285888-5285988 6.87e-02 6_[-4(5.52e-05)]_73 chr9:70622755-70622855 1.52e-09 [+6(3.19e-14)]_30_[+6(1.59e-09)]_10 chr13:25982146-25982246 1.65e-01 2_[+3(2.45e-05)]_90 chr13:47319552-47319652 9.25e-07 [+6(6.40e-10)]_16_[-3(4.49e-05)]_46 chr18:60891140-60891240 1.64e-03 23_[-2(8.04e-05)]_56 chr17:86582274-86582374 3.63e-02 100 chr4:77558781-77558881 3.38e-03 32_[-1(3.66e-06)]_54 chr15:58588993-58589093 5.42e-02 56_[+3(1.23e-05)]_36 chr1:116147779-116147879 6.21e-02 100 chr19:24054787-24054887 4.87e-03 12_[-5(6.42e-05)]_67 chr15:30506453-30506553 9.73e-01 100 chr13:29014500-29014600 1.43e-07 65_[-2(3.12e-07)]_14 chr13:52875577-52875677 8.53e-02 100 chr10:117094808-11709490 1.24e-01 100 chr15:31175843-31175943 4.04e-10 2_[+6(2.73e-17)]_[+6(2.73e-17)]_\ [+6(2.73e-17)]_8 chr1:143918893-143918993 9.23e-01 100 chr13:53777976-53778076 1.02e-01 51_[+10(9.66e-05)]_7_\ [+10(1.05e-07)] chr6:8627315-8627415 2.26e-02 100 chr2:92278599-92278699 1.46e-03 [-10(3.80e-05)]_79 chr12:44857989-44858089 2.66e-04 29_[-5(5.88e-05)]_27_[-4(3.37e-05)]_\ 2 chr6:18594576-18594676 8.09e-01 100 chr11:86920337-86920437 9.62e-01 100 chr5:64389237-64389337 6.50e-03 66_[+10(1.36e-07)]_13 chr5:51477070-51477170 9.94e-01 100 chr18:68493806-68493906 2.86e-07 32_[+7(9.78e-13)]_39 chr17:12187694-12187794 3.32e-02 100 chr6:103613113-103613213 4.03e-10 46_[+1(2.24e-05)]_18_[+9(2.70e-07)]_\ 7 chr15:41193181-41193281 2.99e-05 4_[+8(8.63e-08)]_67 chr6:108324937-108325037 7.76e-01 100 chr16:29262917-29263017 8.81e-01 100 chr11:113167469-11316756 5.82e-05 60_[-2(8.99e-07)]_19 chr11:36381589-36381689 7.97e-02 100 chr11:84642119-84642219 2.37e-10 39_[+1(2.40e-05)]_11_[+4(3.47e-13)]_\ 15 chr3:55280946-55281046 1.63e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-37.local ********************************************************************************