******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Vip_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:105486905-105487005 1.0000 100 chr17:70471982-70472082 1.0000 100 chr6:140200247-140200347 1.0000 100 chr14:112205373-11220547 1.0000 100 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1.0000 100 chr5:82346618-82346718 1.0000 100 chr1:39266933-39267033 1.0000 100 chr13:117833241-11783334 1.0000 100 chr9:37034101-37034201 1.0000 100 chr10:43124519-43124619 1.0000 100 chr5:18137836-18137936 1.0000 100 chr18:7120793-7120893 1.0000 100 chr4:107652916-107653016 1.0000 100 chr17:87142348-87142448 1.0000 100 chr12:70718645-70718745 1.0000 100 chr4:119927310-119927410 1.0000 100 chr1:177027388-177027488 1.0000 100 chr18:9494901-9495001 1.0000 100 chr5:112848845-112848945 1.0000 100 chr1:152282625-152282725 1.0000 100 chr1:174865289-174865389 1.0000 100 chr13:60007696-60007796 1.0000 100 chr16:40504180-40504280 1.0000 100 chr15:96012307-96012407 1.0000 100 chr1:151955414-151955514 1.0000 100 chr19:10424099-10424199 1.0000 100 chr11:52909814-52909914 1.0000 100 chr4:88238298-88238398 1.0000 100 chr16:83606817-83606917 1.0000 100 chr7:98895622-98895722 1.0000 100 chr5:74857129-74857229 1.0000 100 chr18:49084852-49084952 1.0000 100 chr12:109399513-10939961 1.0000 100 chr5:54895168-54895268 1.0000 100 chr18:45698044-45698144 1.0000 100 chr18:77226446-77226546 1.0000 100 chr5:139083708-139083808 1.0000 100 chr4:106838821-106838921 1.0000 100 chr12:26136862-26136962 1.0000 100 chr1:35957364-35957464 1.0000 100 chr18:54545077-54545177 1.0000 100 chr15:87543923-87544023 1.0000 100 chr4:68906895-68906995 1.0000 100 chr7:138668375-138668475 1.0000 100 chr5:16000857-16000957 1.0000 100 chr9:42217692-42217792 1.0000 100 chr12:11350446-11350546 1.0000 100 chrX:105211548-105211648 1.0000 100 chr12:33235938-33236038 1.0000 100 chr19:55057573-55057673 1.0000 100 chr8:100499491-100499591 1.0000 100 chr4:153913302-153913402 1.0000 100 chr1:54002067-54002167 1.0000 100 chr17:48776379-48776479 1.0000 100 chr9:76169201-76169301 1.0000 100 chr13:28416060-28416160 1.0000 100 chr13:54116269-54116369 1.0000 100 chr18:75222839-75222939 1.0000 100 chr18:25535648-25535748 1.0000 100 chr4:83097962-83098062 1.0000 100 chr15:72083590-72083690 1.0000 100 chr1:126973825-126973925 1.0000 100 chr19:48463424-48463524 1.0000 100 chr15:51082380-51082480 1.0000 100 chr13:29327993-29328093 1.0000 100 chr13:59004162-59004262 1.0000 100 chr11:8424153-8424253 1.0000 100 chr15:54362683-54362783 1.0000 100 chr1:25644202-25644302 1.0000 100 chr13:59065544-59065644 1.0000 100 chr6:16553712-16553812 1.0000 100 chr2:116913866-116913966 1.0000 100 chr12:54052987-54053087 1.0000 100 chr1:42233399-42233499 1.0000 100 chr11:110754389-11075448 1.0000 100 chr5:77170559-77170659 1.0000 100 chr5:64043979-64044079 1.0000 100 chr18:82095623-82095723 1.0000 100 chr17:62608072-62608172 1.0000 100 chr6:121052157-121052257 1.0000 100 chr15:63958872-63958972 1.0000 100 chr6:134372918-134373018 1.0000 100 chr16:52609812-52609912 1.0000 100 chr12:7074079-7074179 1.0000 100 chr11:56351154-56351254 1.0000 100 chr11:109874966-10987506 1.0000 100 chr3:71653926-71654026 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Vip_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Vip_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Vip_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Vip_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.256 C 0.244 G 0.244 T 0.256 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Vip_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.272 C 0.229 G 0.229 T 0.272 ******************************************************************************** ******************************************************************************** MOTIF SMCAGCTG MEME-1 width = 8 sites = 152 llr = 1252 E-value = 6.4e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif SMCAGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3:6:::: pos.-specific C 65a::a:: probability G 42:1a:1a matrix T :::3::8: bits 2.1 * ** * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 * * **** (11.9 bits) 0.9 * * **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCAGCTG consensus GA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCAGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr19:55057573-55057673 - 81 1.04e-05 CATACTACAG CCCAGCTG GTGGGTACCA chr9:42217692-42217792 + 70 1.04e-05 GGTGCGATTC CCCAGCTG GCCGGAAGGT chr5:139083708-139083808 + 92 1.04e-05 GCAGTACTTC CCCAGCTG G chr4:88238298-88238398 - 24 1.04e-05 GCCGGAAACT CCCAGCTG GACACTGTGC chr14:119217167-11921726 - 62 1.04e-05 TGACCGAGTT CCCAGCTG GAGTGCAATG chr3:68759408-68759508 - 72 1.04e-05 ACGAGGGTCA CCCAGCTG GTAAGTTTCA chr2:14935973-14936073 - 44 1.04e-05 TTGTTTGCTT CCCAGCTG TCAGGAGGTG chr8:27289445-27289545 - 63 1.04e-05 CTACATAGCA CCCAGCTG CAACTCAGAG chr7:37563258-37563358 - 32 1.04e-05 GGTTGCTTGG CCCAGCTG CTTCCTGCTG chr12:92198535-92198635 + 47 1.04e-05 GAAGGACTTT CCCAGCTG GTTTTGGGCC chr10:69760174-69760274 - 27 1.04e-05 AGAGCTCATG CCCAGCTG AAGTGGCTTA chr10:89103329-89103429 + 28 1.04e-05 cggctgagag cccagctg acattagtgc chr15:33314952-33315052 - 83 1.04e-05 CCAGGGAAAA CCCAGCTG TTCTTCATTT chr2:6795950-6796050 - 53 1.04e-05 GCTAAGGCTG CCCAGCTG AAGGACATTA chr2:48063404-48063504 + 47 1.04e-05 GCCAGAGAAT CCCAGCTG GTCCTGCTTC chr17:63012189-63012289 - 45 1.04e-05 TGAGAGAAGG CCCAGCTG CTCGGCAGCT chr15:55231493-55231593 - 76 1.04e-05 TGCCCCGGAG CCCAGCTG TTATGATTCA chr9:118764476-118764576 + 73 1.04e-05 TATTAAATAC CCCAGCTG CGGCCGGCTC chr2:8165420-8165520 + 65 1.04e-05 tggaaagaaa cccagctg ctgttctggc chr8:23597129-23597229 - 25 1.04e-05 AAGGTTCCTC CCCAGCTG CATCTTGCAT chrX:162398911-162399011 - 32 1.04e-05 TTAAGCTGAG CCCAGCTG GACAGTAATG chr14:63743818-63743918 + 92 1.04e-05 CACCTGTGCT CCCAGCTG G chr9:37054741-37054841 + 35 1.04e-05 CAGCTGGCTC CCCAGCTG TGGTCTGCAT chr2:128324531-128324631 + 26 1.04e-05 GAGCGCCAAC CCCAGCTG CTTCTCCCTC chr12:105852712-10585281 + 14 1.04e-05 CCAATCTGAA CCCAGCTG TGTGCAGCGT chr5:106088675-106088775 - 76 1.04e-05 TGTGCAGAGG CCCAGCTG GAGATCAGCT chr18:25726715-25726815 + 46 1.04e-05 AAGTCCCTAG CCCAGCTG CACAGTAGTC chr5:136804977-136805077 + 41 1.04e-05 TGGGCTCTGG CCCAGCTG CTTGACTTCT chr9:69093862-69093962 + 28 1.04e-05 GTTTGCGCAT CCCAGCTG GCCACTCTGA chr11:16832112-16832212 - 63 1.04e-05 CCCCCGCCTC CCCAGCTG GCAGGATTTC chr1:105486905-105487005 - 39 1.04e-05 CCAGCTGGCT CCCAGCTG ACTTGAATCT chr7:138668375-138668475 - 25 2.08e-05 TCCTTATGCT GCCAGCTG CAGCCTAATT chr16:40504180-40504280 + 33 2.08e-05 TGTGCTAAGT GCCAGCTG TCATTTCTTG chr1:82474887-82474987 - 64 2.08e-05 AGTCAGGGTG GCCAGCTG CTTCATTTTG chr16:77315320-77315420 - 51 2.08e-05 AGGAAAAGAA GCCAGCTG CCACCCAACG chr1:60938219-60938319 + 13 2.08e-05 TCAAGCTCAG GCCAGCTG CAGGGCCAGA chr13:83718221-83718321 + 76 2.08e-05 GGTCTCTCAG GCCAGCTG AATACTGGTA chr9:98783577-98783677 + 79 2.08e-05 ggtcaataaa gccagctg atgagtcagt chr10:39587173-39587273 + 44 2.08e-05 CAGCCCCCTT GCCAGCTG CCAGCTGTTA chr2:71667631-71667731 - 25 2.08e-05 TGTCACCAGA GCCAGCTG TCTACAACAA chr16:52609812-52609912 - 86 4.36e-05 TTCCAGA CACAGCTG CACTGCTCTT chr11:8424153-8424253 + 23 4.36e-05 TATAAAGACA CCCTGCTG TAGGAAGCTA chr15:72083590-72083690 - 28 4.36e-05 CTTTGCTGCC CCCTGCTG TTCAGCATGA chr18:75222839-75222939 + 3 4.36e-05 GT CACAGCTG CCAGCAGAAG chr12:11350446-11350546 + 58 4.36e-05 TTGGGCTAAG CCCTGCTG TAGCAACTGG chr10:94383853-94383953 + 90 4.36e-05 GCGGGGGCTG CACAGCTG AGT chr15:27792450-27792550 + 14 4.36e-05 GTGCATGAAT CACAGCTG GAGGCGGAAC chr11:50648349-50648449 + 28 4.36e-05 AGTCATCTTC CACAGCTG CCAGGCTCTG chr18:53591148-53591248 - 78 4.36e-05 CCAGCTCCTT CCCTGCTG ATAACAAAGG chr11:83383148-83383248 - 20 4.36e-05 TTTATGGTGG CACAGCTG GAGATGAACA chr16:65896697-65896797 - 72 4.36e-05 AGAACCCTCA CACAGCTG CAAGTCCTGG chr7:69233241-69233341 - 61 4.36e-05 CAATGTGACT CACAGCTG TGGGTACCAC chr18:65510286-65510386 + 3 4.36e-05 AC CCCTGCTG GCCCGCCACT chr15:58976485-58976585 - 36 4.36e-05 CCCATACAGC CCCTGCTG TGCTGGGGGA chr10:85320881-85320981 - 49 4.36e-05 CCTGTGAGGC CCCTGCTG GCTCACCCTG chr6:31134714-31134814 - 86 4.36e-05 TCCTTTC CCCTGCTG AGAATCATGT chr3:88204645-88204745 + 15 4.36e-05 GCTACAATTA CCCTGCTG TTCTGGCCTA chr3:153120659-153120759 - 61 4.36e-05 CTGAAGCCAG CACAGCTG AAGCCATTGA chr3:83797785-83797885 - 31 4.36e-05 CAGGGGTGCC CCCTGCTG GAGAAGACAG chr7:76788477-76788577 - 72 4.36e-05 TGACAAGGAG CCCTGCTG TCAGGCTGCT chr9:14839508-14839608 - 58 4.36e-05 CACAGACAGA CACAGCTG CTCTGAGGAG chr5:142107471-142107571 + 92 4.36e-05 AGAACTATTC CACAGCTG C chrX:85343515-85343615 - 88 4.36e-05 GCTCA CACAGCTG TTCTGTCAAC chr18:36119414-36119514 + 41 4.36e-05 TGACCCCTGG CCCTGCTG AAGGTCTTCA chr9:26480845-26480945 + 66 4.36e-05 ctggctgcct ccCTGCTG CCATCCCCAT chr10:76653897-76653997 - 26 4.36e-05 AGCCTTTTAC CACAGCTG GAATAGAGCA chr1:23169009-23169109 - 14 4.36e-05 CACATACAGC CCCTGCTG CCTAACACGC chr11:109874966-10987506 + 79 5.40e-05 CCCTGAATGG CGCAGCTG TTCAGTTGAT chr13:109190328-10919042 - 30 5.40e-05 CTCCTTCAAC CGCAGCTG TTTCCCCAAA chr10:126526206-12652630 - 70 5.40e-05 CTATTCTCCA CGCAGCTG CCGGCTGCTG chr3:104716333-104716433 + 44 5.40e-05 TGGCTGAATT CGCAGCTG CACCCAGCCT chr3:42589510-42589610 - 49 5.40e-05 AAAAAGAAAC CGCAGCTG CTTGTGGATG chr4:68906895-68906995 + 12 7.68e-05 GTGAACTGCA GCCTGCTG GAATCACACT chr18:49084852-49084952 - 21 7.68e-05 CCCAGGCAAG GACAGCTG TGGGTGATTC chr10:43124519-43124619 - 45 7.68e-05 ATGTAAATTG GACAGCTG TGCTTGGGCC chr19:53440507-53440607 - 82 7.68e-05 GGCAAAGTGT GCCTGCTG CAAAACCATA chr13:26154897-26154997 - 66 7.68e-05 ATATGGGCAG GCCTGCTG CTTGCCTATT chr2:173457162-173457262 - 57 7.68e-05 AGCCTGGAGG GACAGCTG GAAACCAAAC chr9:112130749-112130849 + 64 7.68e-05 TAGTTTGAGT GACAGCTG AGGCAGACTG chr14:58512130-58512230 - 7 7.68e-05 GACCACTGCT GACAGCTG GTTAGA chr2:157874762-157874862 - 38 7.68e-05 CCTTAGTGCA GACAGCTG CAGGACTGGG chr17:45867215-45867315 - 34 7.68e-05 TCCAACCTCG GACAGCTG TGAGAACTCT chr9:30522258-30522358 - 4 7.68e-05 GGGTAGGGGT GACAGCTG TGG chr11:36204831-36204931 - 73 7.68e-05 TGACCAAGCA GACAGCTG CTCTACAAAG chr2:131748754-131748854 + 12 7.68e-05 CCTAGCTGCA GCCTGCTG TTACCACCCA chr15:31044917-31045017 - 13 7.68e-05 GGCAGCAATA GACAGCTG CACTGGCTAG chr2:38395174-38395274 - 16 7.68e-05 CCTGCGCCGG GACAGCTG CTGTCAGCAT chr15:76747391-76747491 - 1 7.68e-05 GAGAGTATTG GCCTGCTG chr9:28254951-28255051 - 87 7.68e-05 AGGGCA GACAGCTG AAAGCATAGA chr16:9247090-9247190 - 68 7.68e-05 TGGCATCTGG GACAGCTG ACTCAGGAGC chr8:128654470-128654570 - 38 7.68e-05 CCTGACAGGC GCCTGCTG CACAGTAGTG chr2:93071823-93071923 - 63 7.68e-05 AGTTGGGGGT GCCTGCTG ATGTGGAGGG chr1:9627119-9627219 + 42 7.68e-05 CTTCCCTCCC GCCTGCTG CTAAGGCGTT chr14:112205373-11220547 + 14 7.68e-05 ATAGGGCCAG GACAGCTG AAGCTTTCAA chr13:28416060-28416160 - 77 8.72e-05 TATTCTGGCA GGCAGCTG CACGGTACAT chr17:48776379-48776479 - 54 8.72e-05 AGGCCTCAGA GGCAGCTG CAGCCTAGAG chr1:151955414-151955514 + 61 8.72e-05 TGCTCAATTA GGCAGCTG CAAGTGGCAT chr1:186250242-186250342 + 71 8.72e-05 AATTCCTCTT GGCAGCTG TAAGGGCTGG chr11:57319341-57319441 - 29 8.72e-05 CCAGCAGAGA GGCAGCTG GAACCATGAC chr1:76724495-76724595 - 6 8.72e-05 AGAACTGCAA GGCAGCTG GTTGT chr9:27996465-27996565 - 74 8.72e-05 CATCTGGAGT GGCAGCTG CTCAAAGACT chr13:115014104-11501420 - 45 8.72e-05 GTTTTCCAAA GGCAGCTG CCTGCGAATG chr6:121410053-121410153 + 67 8.72e-05 CAGCTGCTGG GGCAGCTG CAGAGAGAAG chr12:99776445-99776545 + 71 8.72e-05 CTAGGGAAGA GGCAGCTG AACAGTTTAG chr1:126973825-126973925 + 63 9.96e-05 AACACCCACG CACTGCTG CAGGCAATTG chr1:166796869-166796969 - 48 9.96e-05 CGTCATCTGG CACTGCTG GCTTCACATC chr10:130259444-13025954 - 10 9.96e-05 TGGGAGGGAG CACTGCTG ACATGTTTT chr7:129010572-129010672 + 14 9.96e-05 TAAAACACAG CACTGCTG AACGGGTGCC chr3:99195385-99195485 + 20 9.96e-05 cagtgtgctg cactgctg tctgcgtcct chr13:111323112-11132321 - 82 9.96e-05 CAGCTCCAGA CACTGCTG AGAGCTAAGC chr10:8955889-8955989 + 68 9.96e-05 GGGGAACTCC CACTGCTG GGCAGCTTCC chr1:22268932-22269032 + 28 1.19e-04 CTGCATGAAG CGCTGCTG CCATCTTGTG chr4:28301609-28301709 - 87 1.19e-04 AGCACC CGCTGCTG TTTCTGGTTC chr14:64356502-64356602 + 38 1.40e-04 GTACAGCGAA CCCGGCTG CTTCATTTAC chr4:120189879-120189979 - 74 1.40e-04 TGAGTTTGCA CCCGGCTG GCCCCTGGGC chr3:157040559-157040659 - 51 1.59e-04 GTGCTAACGT GGCTGCTG TTCCTCCCAC chr8:84520115-84520215 - 24 1.59e-04 CCCGAATCCA GGCTGCTG TCCTCCATGG chr2:143246117-143246217 + 60 1.59e-04 AGTGACAGAG GCCAGCGG CATGCAGGCA chr14:123065563-12306566 + 16 1.68e-04 atgcagaacg gccggctg cttgcttctc chr2:92485569-92485669 + 70 1.68e-04 TAAAGCCGCC GCCGGCTG GGCAGAGCGG chr5:112848845-112848945 - 2 1.95e-04 TAGGTGGAGA CACAGCGG C chr15:73131966-73132066 - 39 1.95e-04 CATGCAGAGT CACAGCGG CCCATTAGAC chr16:8878887-8878987 + 88 1.95e-04 TCTCTCCTGT CCCCGCTG GTGAC chr14:120155741-12015584 - 39 1.95e-04 TGGAGTGCTA CCCCGCTG AGCTTATTTT chr11:43385194-43385294 - 6 1.95e-04 AAGAGAGGGT CCCTGCGG GCATC chr4:62767543-62767643 - 69 1.95e-04 AATACTCTCC CCCTGCGG CAAGCTCCTG chr1:38438724-38438824 + 19 2.06e-04 GCTATATAAA CACGGCTG CTTAGAATTC chr9:97470972-97471072 - 80 2.60e-04 CAAAGAGCAA GCCTGCGG GTAGCATCAA chr8:36065559-36065659 - 64 2.60e-04 CACACAGCAG GACAGCGG GAGAGCTTGT chr4:95290177-95290277 - 36 2.70e-04 AGTGATGGCT GACGGCTG CTTGAGTGCA chr1:101683998-101684098 - 63 2.70e-04 AGTAAAATGG GACGGCTG AAGAAGAGGC chr11:41962589-41962689 + 69 2.88e-04 CTAGGACAGT GGCAGCGG CAACAGAAAG chr15:92621784-92621884 + 29 2.88e-04 AACCTTTTTA GCCAGCCG CTACCAGACT chr17:11607975-11608075 + 42 2.88e-04 TGTGTGCAGA GCCAGCCG CTCCTCTGCA chr8:120413180-120413280 - 18 2.88e-04 GCAGCCCGCT GCCAGCCG CCCGCCACGC chr5:59715440-59715540 - 64 2.88e-04 AAGGATGATT GCCAGCCG GAGTCTGTTT chr1:170392717-170392817 - 8 3.17e-04 AGGCAGAGGG CACTGCGG TATACAG chr10:119079204-11907930 - 47 3.17e-04 CACCATCAGG CACTGCGG ACTCTGGCAT chr10:39484531-39484631 + 21 3.54e-04 CTTCGCCTCT CCCTGCCG GCCACCTCCT chr15:54952313-54952413 + 90 3.54e-04 CCAGCCAGGG CGCTGCGG ACA chr2:173413767-173413867 + 69 3.54e-04 CCCTGGTGCA CGCCGCTG CTGCCAGTCG chr8:84363667-84363767 - 3 3.82e-04 CAAGCGGGAA CCCGGCGG TT chr18:39557874-39557974 + 45 3.82e-04 ATAGTATAAA GACTGCGG GGCAGACTAG chr2:159513873-159513973 - 7 3.82e-04 AGCAGGGCTG GACTGCGG GCGATC chr9:43545176-43545276 + 37 4.27e-04 CCTCCCCCGG GGCCGCTG CATGAATACT chr13:26283777-26283877 - 81 4.27e-04 GCATGCACAT GGCCGCTG TTTCCTCCAC chr1:128539513-128539613 + 62 4.34e-04 AAAAATAATT GCCGGCGG AAAGAGGATG chr10:57001248-57001348 - 45 4.78e-04 AAAAAAGAAT CGCTGCCG CCTGAGACAT chr4:106838821-106838921 - 65 5.42e-04 CGGGGGAAGT GGCGGCGG CCCGCCAAGT chr19:7165831-7165931 + 7 5.42e-04 CCTcgc ggcggcgg cggcggcggg chr3:96414450-96414550 + 5 5.66e-04 CCGG CGCCGCGG AGCTCCCGGC chr3:36784611-36784711 - 11 6.05e-04 CTCCTGTCCT CGCGGCCG GAAGCGAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCAGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:55057573-55057673 1e-05 80_[-1]_12 chr9:42217692-42217792 1e-05 69_[+1]_23 chr5:139083708-139083808 1e-05 91_[+1]_1 chr4:88238298-88238398 1e-05 23_[-1]_69 chr14:119217167-11921726 1e-05 61_[-1]_31 chr3:68759408-68759508 1e-05 71_[-1]_21 chr2:14935973-14936073 1e-05 43_[-1]_49 chr8:27289445-27289545 1e-05 62_[-1]_30 chr7:37563258-37563358 1e-05 31_[-1]_61 chr12:92198535-92198635 1e-05 46_[+1]_46 chr10:69760174-69760274 1e-05 26_[-1]_66 chr10:89103329-89103429 1e-05 27_[+1]_65 chr15:33314952-33315052 1e-05 82_[-1]_10 chr2:6795950-6796050 1e-05 52_[-1]_40 chr2:48063404-48063504 1e-05 46_[+1]_46 chr17:63012189-63012289 1e-05 44_[-1]_48 chr15:55231493-55231593 1e-05 75_[-1]_17 chr9:118764476-118764576 1e-05 72_[+1]_20 chr2:8165420-8165520 1e-05 64_[+1]_28 chr8:23597129-23597229 1e-05 24_[-1]_68 chrX:162398911-162399011 1e-05 31_[-1]_61 chr14:63743818-63743918 1e-05 91_[+1]_1 chr9:37054741-37054841 1e-05 34_[+1]_58 chr2:128324531-128324631 1e-05 25_[+1]_67 chr12:105852712-10585281 1e-05 13_[+1]_79 chr5:106088675-106088775 1e-05 75_[-1]_17 chr18:25726715-25726815 1e-05 45_[+1]_47 chr5:136804977-136805077 1e-05 40_[+1]_52 chr9:69093862-69093962 1e-05 27_[+1]_65 chr11:16832112-16832212 1e-05 62_[-1]_30 chr1:105486905-105487005 1e-05 38_[-1]_54 chr7:138668375-138668475 2.1e-05 24_[-1]_68 chr16:40504180-40504280 2.1e-05 32_[+1]_60 chr1:82474887-82474987 2.1e-05 63_[-1]_29 chr16:77315320-77315420 2.1e-05 50_[-1]_42 chr1:60938219-60938319 2.1e-05 12_[+1]_80 chr13:83718221-83718321 2.1e-05 75_[+1]_17 chr9:98783577-98783677 2.1e-05 78_[+1]_14 chr10:39587173-39587273 2.1e-05 43_[+1]_49 chr2:71667631-71667731 2.1e-05 24_[-1]_68 chr16:52609812-52609912 4.4e-05 85_[-1]_7 chr11:8424153-8424253 4.4e-05 22_[+1]_70 chr15:72083590-72083690 4.4e-05 27_[-1]_65 chr18:75222839-75222939 4.4e-05 2_[+1]_90 chr12:11350446-11350546 4.4e-05 57_[+1]_35 chr10:94383853-94383953 4.4e-05 89_[+1]_3 chr15:27792450-27792550 4.4e-05 13_[+1]_79 chr11:50648349-50648449 4.4e-05 27_[+1]_65 chr18:53591148-53591248 4.4e-05 77_[-1]_15 chr11:83383148-83383248 4.4e-05 19_[-1]_73 chr16:65896697-65896797 4.4e-05 71_[-1]_21 chr7:69233241-69233341 4.4e-05 60_[-1]_32 chr18:65510286-65510386 4.4e-05 2_[+1]_90 chr15:58976485-58976585 4.4e-05 35_[-1]_57 chr10:85320881-85320981 4.4e-05 48_[-1]_44 chr6:31134714-31134814 4.4e-05 85_[-1]_7 chr3:88204645-88204745 4.4e-05 14_[+1]_78 chr3:153120659-153120759 4.4e-05 60_[-1]_32 chr3:83797785-83797885 4.4e-05 30_[-1]_62 chr7:76788477-76788577 4.4e-05 71_[-1]_21 chr9:14839508-14839608 4.4e-05 57_[-1]_35 chr5:142107471-142107571 4.4e-05 91_[+1]_1 chrX:85343515-85343615 4.4e-05 87_[-1]_5 chr18:36119414-36119514 4.4e-05 40_[+1]_52 chr9:26480845-26480945 4.4e-05 65_[+1]_27 chr10:76653897-76653997 4.4e-05 25_[-1]_67 chr1:23169009-23169109 4.4e-05 13_[-1]_79 chr11:109874966-10987506 5.4e-05 78_[+1]_14 chr13:109190328-10919042 5.4e-05 29_[-1]_63 chr10:126526206-12652630 5.4e-05 69_[-1]_23 chr3:104716333-104716433 5.4e-05 43_[+1]_49 chr3:42589510-42589610 5.4e-05 48_[-1]_44 chr4:68906895-68906995 7.7e-05 11_[+1]_81 chr18:49084852-49084952 7.7e-05 20_[-1]_72 chr10:43124519-43124619 7.7e-05 44_[-1]_48 chr19:53440507-53440607 7.7e-05 81_[-1]_11 chr13:26154897-26154997 7.7e-05 65_[-1]_27 chr2:173457162-173457262 7.7e-05 56_[-1]_36 chr9:112130749-112130849 7.7e-05 63_[+1]_29 chr14:58512130-58512230 7.7e-05 6_[-1]_86 chr2:157874762-157874862 7.7e-05 37_[-1]_55 chr17:45867215-45867315 7.7e-05 33_[-1]_59 chr9:30522258-30522358 7.7e-05 3_[-1]_89 chr11:36204831-36204931 7.7e-05 72_[-1]_20 chr2:131748754-131748854 7.7e-05 11_[+1]_81 chr15:31044917-31045017 7.7e-05 12_[-1]_80 chr2:38395174-38395274 7.7e-05 15_[-1]_77 chr15:76747391-76747491 7.7e-05 [-1]_92 chr9:28254951-28255051 7.7e-05 86_[-1]_6 chr16:9247090-9247190 7.7e-05 67_[-1]_25 chr8:128654470-128654570 7.7e-05 37_[-1]_55 chr2:93071823-93071923 7.7e-05 62_[-1]_30 chr1:9627119-9627219 7.7e-05 41_[+1]_51 chr14:112205373-11220547 7.7e-05 13_[+1]_79 chr13:28416060-28416160 8.7e-05 76_[-1]_16 chr17:48776379-48776479 8.7e-05 53_[-1]_39 chr1:151955414-151955514 8.7e-05 60_[+1]_32 chr1:186250242-186250342 8.7e-05 70_[+1]_22 chr11:57319341-57319441 8.7e-05 28_[-1]_64 chr1:76724495-76724595 8.7e-05 5_[-1]_87 chr9:27996465-27996565 8.7e-05 73_[-1]_19 chr13:115014104-11501420 8.7e-05 44_[-1]_48 chr6:121410053-121410153 8.7e-05 66_[+1]_26 chr12:99776445-99776545 8.7e-05 70_[+1]_22 chr1:126973825-126973925 0.0001 62_[+1]_30 chr1:166796869-166796969 0.0001 47_[-1]_45 chr10:130259444-13025954 0.0001 9_[-1]_83 chr7:129010572-129010672 0.0001 13_[+1]_79 chr3:99195385-99195485 0.0001 19_[+1]_73 chr13:111323112-11132321 0.0001 81_[-1]_11 chr10:8955889-8955989 0.0001 67_[+1]_25 chr1:22268932-22269032 0.00012 27_[+1]_65 chr4:28301609-28301709 0.00012 86_[-1]_6 chr14:64356502-64356602 0.00014 37_[+1]_55 chr4:120189879-120189979 0.00014 73_[-1]_19 chr3:157040559-157040659 0.00016 50_[-1]_42 chr8:84520115-84520215 0.00016 23_[-1]_69 chr2:143246117-143246217 0.00016 59_[+1]_33 chr14:123065563-12306566 0.00017 15_[+1]_77 chr2:92485569-92485669 0.00017 69_[+1]_23 chr5:112848845-112848945 0.0002 1_[-1]_91 chr15:73131966-73132066 0.0002 38_[-1]_54 chr16:8878887-8878987 0.0002 87_[+1]_5 chr14:120155741-12015584 0.0002 38_[-1]_54 chr11:43385194-43385294 0.0002 5_[-1]_87 chr4:62767543-62767643 0.0002 68_[-1]_24 chr1:38438724-38438824 0.00021 18_[+1]_74 chr9:97470972-97471072 0.00026 79_[-1]_13 chr8:36065559-36065659 0.00026 63_[-1]_29 chr4:95290177-95290277 0.00027 35_[-1]_57 chr1:101683998-101684098 0.00027 62_[-1]_30 chr11:41962589-41962689 0.00029 68_[+1]_24 chr15:92621784-92621884 0.00029 28_[+1]_64 chr17:11607975-11608075 0.00029 41_[+1]_51 chr8:120413180-120413280 0.00029 17_[-1]_75 chr5:59715440-59715540 0.00029 63_[-1]_29 chr1:170392717-170392817 0.00032 7_[-1]_85 chr10:119079204-11907930 0.00032 46_[-1]_46 chr10:39484531-39484631 0.00035 20_[+1]_72 chr15:54952313-54952413 0.00035 89_[+1]_3 chr2:173413767-173413867 0.00035 68_[+1]_24 chr8:84363667-84363767 0.00038 2_[-1]_90 chr18:39557874-39557974 0.00038 44_[+1]_48 chr2:159513873-159513973 0.00038 6_[-1]_86 chr9:43545176-43545276 0.00043 36_[+1]_56 chr13:26283777-26283877 0.00043 80_[-1]_12 chr1:128539513-128539613 0.00043 61_[+1]_31 chr10:57001248-57001348 0.00048 44_[-1]_48 chr4:106838821-106838921 0.00054 64_[-1]_28 chr19:7165831-7165931 0.00054 6_[+1]_86 chr3:96414450-96414550 0.00057 4_[+1]_88 chr3:36784611-36784711 0.00061 10_[-1]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCAGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SMCAGCTG width=8 seqs=152 chr19:55057573-55057673 ( 81) CCCAGCTG 1 chr9:42217692-42217792 ( 70) CCCAGCTG 1 chr5:139083708-139083808 ( 92) CCCAGCTG 1 chr4:88238298-88238398 ( 24) CCCAGCTG 1 chr14:119217167-11921726 ( 62) CCCAGCTG 1 chr3:68759408-68759508 ( 72) CCCAGCTG 1 chr2:14935973-14936073 ( 44) CCCAGCTG 1 chr8:27289445-27289545 ( 63) CCCAGCTG 1 chr7:37563258-37563358 ( 32) CCCAGCTG 1 chr12:92198535-92198635 ( 47) CCCAGCTG 1 chr10:69760174-69760274 ( 27) CCCAGCTG 1 chr10:89103329-89103429 ( 28) CCCAGCTG 1 chr15:33314952-33315052 ( 83) CCCAGCTG 1 chr2:6795950-6796050 ( 53) CCCAGCTG 1 chr2:48063404-48063504 ( 47) CCCAGCTG 1 chr17:63012189-63012289 ( 45) CCCAGCTG 1 chr15:55231493-55231593 ( 76) CCCAGCTG 1 chr9:118764476-118764576 ( 73) CCCAGCTG 1 chr2:8165420-8165520 ( 65) CCCAGCTG 1 chr8:23597129-23597229 ( 25) CCCAGCTG 1 chrX:162398911-162399011 ( 32) CCCAGCTG 1 chr14:63743818-63743918 ( 92) CCCAGCTG 1 chr9:37054741-37054841 ( 35) CCCAGCTG 1 chr2:128324531-128324631 ( 26) CCCAGCTG 1 chr12:105852712-10585281 ( 14) CCCAGCTG 1 chr5:106088675-106088775 ( 76) CCCAGCTG 1 chr18:25726715-25726815 ( 46) CCCAGCTG 1 chr5:136804977-136805077 ( 41) CCCAGCTG 1 chr9:69093862-69093962 ( 28) CCCAGCTG 1 chr11:16832112-16832212 ( 63) CCCAGCTG 1 chr1:105486905-105487005 ( 39) CCCAGCTG 1 chr7:138668375-138668475 ( 25) GCCAGCTG 1 chr16:40504180-40504280 ( 33) GCCAGCTG 1 chr1:82474887-82474987 ( 64) GCCAGCTG 1 chr16:77315320-77315420 ( 51) GCCAGCTG 1 chr1:60938219-60938319 ( 13) GCCAGCTG 1 chr13:83718221-83718321 ( 76) GCCAGCTG 1 chr9:98783577-98783677 ( 79) GCCAGCTG 1 chr10:39587173-39587273 ( 44) GCCAGCTG 1 chr2:71667631-71667731 ( 25) GCCAGCTG 1 chr16:52609812-52609912 ( 86) CACAGCTG 1 chr11:8424153-8424253 ( 23) CCCTGCTG 1 chr15:72083590-72083690 ( 28) CCCTGCTG 1 chr18:75222839-75222939 ( 3) CACAGCTG 1 chr12:11350446-11350546 ( 58) CCCTGCTG 1 chr10:94383853-94383953 ( 90) CACAGCTG 1 chr15:27792450-27792550 ( 14) CACAGCTG 1 chr11:50648349-50648449 ( 28) CACAGCTG 1 chr18:53591148-53591248 ( 78) CCCTGCTG 1 chr11:83383148-83383248 ( 20) CACAGCTG 1 chr16:65896697-65896797 ( 72) CACAGCTG 1 chr7:69233241-69233341 ( 61) CACAGCTG 1 chr18:65510286-65510386 ( 3) CCCTGCTG 1 chr15:58976485-58976585 ( 36) CCCTGCTG 1 chr10:85320881-85320981 ( 49) CCCTGCTG 1 chr6:31134714-31134814 ( 86) CCCTGCTG 1 chr3:88204645-88204745 ( 15) CCCTGCTG 1 chr3:153120659-153120759 ( 61) CACAGCTG 1 chr3:83797785-83797885 ( 31) CCCTGCTG 1 chr7:76788477-76788577 ( 72) CCCTGCTG 1 chr9:14839508-14839608 ( 58) CACAGCTG 1 chr5:142107471-142107571 ( 92) CACAGCTG 1 chrX:85343515-85343615 ( 88) CACAGCTG 1 chr18:36119414-36119514 ( 41) CCCTGCTG 1 chr9:26480845-26480945 ( 66) CCCTGCTG 1 chr10:76653897-76653997 ( 26) CACAGCTG 1 chr1:23169009-23169109 ( 14) CCCTGCTG 1 chr11:109874966-10987506 ( 79) CGCAGCTG 1 chr13:109190328-10919042 ( 30) CGCAGCTG 1 chr10:126526206-12652630 ( 70) CGCAGCTG 1 chr3:104716333-104716433 ( 44) CGCAGCTG 1 chr3:42589510-42589610 ( 49) CGCAGCTG 1 chr4:68906895-68906995 ( 12) GCCTGCTG 1 chr18:49084852-49084952 ( 21) GACAGCTG 1 chr10:43124519-43124619 ( 45) GACAGCTG 1 chr19:53440507-53440607 ( 82) GCCTGCTG 1 chr13:26154897-26154997 ( 66) GCCTGCTG 1 chr2:173457162-173457262 ( 57) GACAGCTG 1 chr9:112130749-112130849 ( 64) GACAGCTG 1 chr14:58512130-58512230 ( 7) GACAGCTG 1 chr2:157874762-157874862 ( 38) GACAGCTG 1 chr17:45867215-45867315 ( 34) GACAGCTG 1 chr9:30522258-30522358 ( 4) GACAGCTG 1 chr11:36204831-36204931 ( 73) GACAGCTG 1 chr2:131748754-131748854 ( 12) GCCTGCTG 1 chr15:31044917-31045017 ( 13) GACAGCTG 1 chr2:38395174-38395274 ( 16) GACAGCTG 1 chr15:76747391-76747491 ( 1) GCCTGCTG 1 chr9:28254951-28255051 ( 87) GACAGCTG 1 chr16:9247090-9247190 ( 68) GACAGCTG 1 chr8:128654470-128654570 ( 38) GCCTGCTG 1 chr2:93071823-93071923 ( 63) GCCTGCTG 1 chr1:9627119-9627219 ( 42) GCCTGCTG 1 chr14:112205373-11220547 ( 14) GACAGCTG 1 chr13:28416060-28416160 ( 77) GGCAGCTG 1 chr17:48776379-48776479 ( 54) GGCAGCTG 1 chr1:151955414-151955514 ( 61) GGCAGCTG 1 chr1:186250242-186250342 ( 71) GGCAGCTG 1 chr11:57319341-57319441 ( 29) GGCAGCTG 1 chr1:76724495-76724595 ( 6) GGCAGCTG 1 chr9:27996465-27996565 ( 74) GGCAGCTG 1 chr13:115014104-11501420 ( 45) GGCAGCTG 1 chr6:121410053-121410153 ( 67) GGCAGCTG 1 chr12:99776445-99776545 ( 71) GGCAGCTG 1 chr1:126973825-126973925 ( 63) CACTGCTG 1 chr1:166796869-166796969 ( 48) CACTGCTG 1 chr10:130259444-13025954 ( 10) CACTGCTG 1 chr7:129010572-129010672 ( 14) CACTGCTG 1 chr3:99195385-99195485 ( 20) CACTGCTG 1 chr13:111323112-11132321 ( 82) CACTGCTG 1 chr10:8955889-8955989 ( 68) CACTGCTG 1 chr1:22268932-22269032 ( 28) CGCTGCTG 1 chr4:28301609-28301709 ( 87) CGCTGCTG 1 chr14:64356502-64356602 ( 38) CCCGGCTG 1 chr4:120189879-120189979 ( 74) CCCGGCTG 1 chr3:157040559-157040659 ( 51) GGCTGCTG 1 chr8:84520115-84520215 ( 24) GGCTGCTG 1 chr2:143246117-143246217 ( 60) GCCAGCGG 1 chr14:123065563-12306566 ( 16) GCCGGCTG 1 chr2:92485569-92485669 ( 70) GCCGGCTG 1 chr5:112848845-112848945 ( 2) CACAGCGG 1 chr15:73131966-73132066 ( 39) CACAGCGG 1 chr16:8878887-8878987 ( 88) CCCCGCTG 1 chr14:120155741-12015584 ( 39) CCCCGCTG 1 chr11:43385194-43385294 ( 6) CCCTGCGG 1 chr4:62767543-62767643 ( 69) CCCTGCGG 1 chr1:38438724-38438824 ( 19) CACGGCTG 1 chr9:97470972-97471072 ( 80) GCCTGCGG 1 chr8:36065559-36065659 ( 64) GACAGCGG 1 chr4:95290177-95290277 ( 36) GACGGCTG 1 chr1:101683998-101684098 ( 63) GACGGCTG 1 chr11:41962589-41962689 ( 69) GGCAGCGG 1 chr15:92621784-92621884 ( 29) GCCAGCCG 1 chr17:11607975-11608075 ( 42) GCCAGCCG 1 chr8:120413180-120413280 ( 18) GCCAGCCG 1 chr5:59715440-59715540 ( 64) GCCAGCCG 1 chr1:170392717-170392817 ( 8) CACTGCGG 1 chr10:119079204-11907930 ( 47) CACTGCGG 1 chr10:39484531-39484631 ( 21) CCCTGCCG 1 chr15:54952313-54952413 ( 90) CGCTGCGG 1 chr2:173413767-173413867 ( 69) CGCCGCTG 1 chr8:84363667-84363767 ( 3) CCCGGCGG 1 chr18:39557874-39557974 ( 45) GACTGCGG 1 chr2:159513873-159513973 ( 7) GACTGCGG 1 chr9:43545176-43545276 ( 37) GGCCGCTG 1 chr13:26283777-26283877 ( 81) GGCCGCTG 1 chr1:128539513-128539613 ( 62) GCCGGCGG 1 chr10:57001248-57001348 ( 45) CGCTGCCG 1 chr4:106838821-106838921 ( 65) GGCGGCGG 1 chr19:7165831-7165931 ( 7) GGCGGCGG 1 chr3:96414450-96414550 ( 5) CGCCGCGG 1 chr3:36784611-36784711 ( 11) CGCGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCAGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.3339 E= 6.4e-029 -1389 137 84 -1389 9 119 -26 -1389 -1389 213 -1389 -1389 114 -253 -153 6 -1389 -1389 213 -1389 -1389 213 -1389 -1389 -1389 -231 -95 162 -1389 -1389 213 -1389 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCAGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 152 E= 6.4e-029 0.000000 0.592105 0.407895 0.000000 0.289474 0.519737 0.190789 0.000000 0.000000 1.000000 0.000000 0.000000 0.598684 0.039474 0.078947 0.282895 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.046053 0.118421 0.835526 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCAGCTG MEME-1 regular expression -------------------------------------------------------------------------------- [CG][CA]C[AT]GCTG -------------------------------------------------------------------------------- Time 340.81 secs. ******************************************************************************** ******************************************************************************** MOTIF KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG MEME-2 width = 30 sites = 54 llr = 623 E-value = 3.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:3:111:::131:13:3:22322111:4: pos.-specific C 122234:1212:322221111234112321 probability G 372825284647274656666533664519 matrix T 4:3:3:61423:514:2:312:1132223: bits 2.1 1.9 1.7 1.5 * Relative 1.3 * * * Entropy 1.1 * * * * * (16.6 bits) 0.9 * * * * * * * 0.6 * * * * * * * ***** * 0.4 * * ***** * * ******* ** * * 0.2 ** * *********************** * 0.0 ------------------------------ Multilevel TGAGTGTGGGGGTGGGGGGGGGGCGGGGAG consensus GCTCCCG TTTAC TATATA ACGT CCT sequence G G C C AA T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr12:89047778-89047878 + 47 1.01e-11 agaggggtga ggtgtgagtgggtgggtgggtgggggggag tactttctta chr2:71643967-71644067 - 22 2.32e-10 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGCGTGTGTG ATTCACAGAT chr12:99776445-99776545 + 19 3.94e-10 AAAAAGGCtg tgtgtgtgtgtgtgtgtgGCTGGCTGGCTG GCTGCTAGAC chr16:91995287-91995387 - 31 4.68e-10 TCATCCATCT GGGGGGTGGGGAGGGGGCGGGGAGTGGGGG TTGGCGGAGG chr19:7165831-7165931 + 67 5.55e-10 gagcggagag ggaggcggcgggcggggaggaggcggcggg ggcg chr5:27200356-27200456 + 3 1.76e-09 tg tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtTCTTT chr1:69009533-69009633 + 5 1.76e-09 aggg tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr4:68906895-68906995 + 64 2.82e-09 GAGCTTCTGT TGTGAGTGGGTGCGAATGGGAGCCTGTGAG AAAAATG chr1:165046229-165046329 + 56 6.95e-09 AAGGCCAATC TCACGGGGGGTGGGGGGGGGGGCCTTCCTg aagaaggcag chr2:92956058-92956158 + 49 8.04e-09 AGCgtgtgca tgtgtgtgtctgtgtgtggggaaatgtttg tgagtgtagg chr17:87142348-87142448 - 42 2.47e-08 TTATCTGGAA GGGGGCGGGGCGAGGACAGGGGGAGGGGCG GGGGCTCTGG chr2:82534251-82534351 - 26 3.68e-08 GAAGTAGGAG TGGGCGGGTTGGGGAGCAGGGCAGGTGGAG GGTATAGGGG chr6:121052157-121052257 - 26 5.44e-08 GATGACAGGG CCTGCATGGGGGCGGGGGGAGGAAGGTTGG GAGCTGCAGA chr19:23375002-23375102 - 49 6.18e-08 GTGGCTCTGT GGGGTGTGGGAGTGGAGGTGGGGATCCGCC TCTGTAATTT chr4:152725830-152725930 + 20 9.01e-08 TGCAGAATAA TGAGGCTGTTTGTTAACAGGGAACGGGCAG AAGGGAGCAG chr12:76471891-76471991 - 20 1.02e-07 CTTGCATTTT TGTGTGTGTGTGTGGGGGGGGATTGAACCC ACAGCCTTGT chr1:165119434-165119534 + 70 1.30e-07 CAGGGAGGAA GCAGGGATGGTGGGGGCGGGGCGAGGGGGG G chr9:48677431-48677531 + 53 2.09e-07 GTGgcgtgtg tgcgcctgcctatgtgtgtgtacctgcctg tgtgtgcgca chr18:52746757-52746857 + 43 2.64e-07 TTCAGTCCTC TGTGCCGGCCTGTGCGGATGAAGTGGGGCG CTGCAGGCTT chr12:12196609-12196709 + 50 2.96e-07 GGCACAGCTC TGCGTCAGCCAGTGGAGCTGGCACGGGGAG AACTGAACCA chr9:67632594-67632694 - 71 3.32e-07 . CGGGTGGGGGGGCGGCGAAGAGCGGTGCAG GGGACCGATG chr15:96012307-96012407 - 25 6.43e-07 AGGGAGTAAA AGGGAGTGGGGGTGTGTGGAGCGCTGATTC TTGGAGCCTT chr14:63743818-63743918 - 11 9.83e-07 TGCTGCACCA TGACACTGCTGGTGGGCAGTGGTGGGACAG CTCAGAGCCT chr6:6816502-6816602 + 57 1.09e-06 GTGCAGCTGA TTCGTCTTGGGATGTGGGGGGACGGTGGTC TGTGACCACT chr6:106916871-106916971 + 48 1.21e-06 ATGAGGCAGA GGAGTATGCGCATGTGCATGCGCATGCGTG CTGAAGCTGG chr15:99498567-99498667 - 13 1.34e-06 AGGCTACAAG GCCCTGAGTGGATGCAGGGGACCCTGTCTG CCCCAGGAAA chr2:92059688-92059788 - 64 1.81e-06 CGCTGCG GGCGAGTGGGAGGCGCCAGAGACAGAGGAG GAGTCTGTCA chr12:86824663-86824763 + 69 2.42e-06 TTCCCAACAC CGTGTCGGGTCATGTAGGGCAGACTGGTGG GC chr15:87543923-87544023 + 55 3.55e-06 CTCGTACTGG TGACGGGGCGCGCTGAGCCGGGGCGCGCAG CGACGCCCAG chr14:15411591-15411691 - 37 3.55e-06 AAGGAGGAAG GCAGTAGGGGAGGGAGGGGAGGCATGCAAG AACAAAACAC chr12:109399513-10939961 + 25 3.89e-06 TTTCATCTCG GGAGACACGCGGTTCGGGGAGCCCGTTGTG CAGAGCCCAA chr4:34274310-34274410 - 65 3.89e-06 AAATTT CTAGTCTCTTTATGTGGGTGGGAAGGACAG AGGATGAGTC chr10:21095392-21095492 + 22 3.89e-06 AATGGAATCG GCTCCGTGTTGGTGGAGATGGGCCGAGAAC TGAGTCATGT chr9:48740129-48740229 + 15 4.68e-06 TAACAAACAC AGGCTGTGCTAGCCAAGAGGGGGTGGGGCG GCCAGCACCA chr4:106838821-106838921 - 3 5.61e-06 TGCCCCCTAG AGGCCGCGCGGGTCTGCAGGAGGGGTGGAG AG chr2:105616326-105616426 - 2 5.61e-06 AAAACAATGA GGCTCGGGTGGGAGTGGGGGCGAATTCGAG C chr17:70471982-70472082 - 41 6.13e-06 GAGTCATTTA TGAGGATGGGCATGCCGGGGAATGAGTTAG CACACATGTT chr2:29541908-29542008 + 15 1.03e-05 CCTCGATTCA TGTGGGTGTACATGTGGGGAGTGTGAGCCG CCCGTCACCC chr15:68363067-68363167 - 66 1.22e-05 TGAGC CCCGCCTCTTAACGTGCCGAGGGGGGCGGG TACAGGAAGC chr8:31032061-31032161 - 67 1.33e-05 GTTT GGACAGTGGTGGTCGGTGGCCTACGGTTAG CATCCTGAGG chr9:36922008-36922108 - 18 1.44e-05 GTTACCATGG TGACGCTGCGCAGCCCCGGTGACGGGAGAG ATGTAAGATA chr15:85670150-85670250 - 25 1.84e-05 GTGGCTTCCC GCAGGAAGGGCGCGCGCATGGGCGACCCAG CCAGTCCAAC chr6:126563848-126563948 - 43 1.84e-05 TGATGCCCAA GGTGCCTTTGCAGCTAGGGCGACAGAGCGG CTGGTGTTGC chr3:96414450-96414550 + 55 1.99e-05 CGTTTGTTTT TGAGGCTCGGGAACGCGCGGTGGCCCGCTG CAGGTCTGGA chr12:5227220-5227320 - 13 1.99e-05 TTAGCACTCC TGGGAGGGGTGGGCTGTGGACCGCCTGTTG TTGTGGCATT chr2:138406081-138406181 - 6 3.17e-05 GATGTTGTAG GGAGACTGGGAGCATATGGAGAATGACGCG CTCAG chr13:109487271-10948737 + 45 3.41e-05 GATTTATATC TCTGCCACTTTGTGACGAAAGACCGGGCTG GCATGAACCC chr5:117000674-117000774 - 23 3.41e-05 TTAGAGAGAA GGCGCATGTGGGCTTCGGGCTCGCGCCTCC CCGAGTCTAA chr12:70404247-70404347 - 48 3.41e-05 ATGCAGAACA CCCCCGTTCCTGTGGGGGCGGGAGGCTTGG CTCTCCTTTT chr8:11173199-11173299 + 64 4.92e-05 CATCCTGGTT ACTCTCTGTGGACGCGGGTGAGTCACAGAG AGAGCGT chr2:179582871-179582971 + 61 8.00e-05 GACTCGGATG CGGGCGTCTCTGCTCCGCGATAGGCGCGAG AGGAATTTCA chr15:54952313-54952413 + 39 1.04e-04 CCCTACCGGA TCGGCGTGGCGGCTCATGCTGCGGCGTCCG GGTGCCTCGC chr8:128654470-128654570 + 1 1.35e-04 . CGCGGCGCGGTGCTGCGATGGCAGCTTCAC TACTGTGCAG chr1:42538915-42539015 + 37 1.73e-04 CAGCCGCTCC TGGGCGGCGTTAGCAACGTGTACCGACGCC AGGGAGAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:89047778-89047878 1e-11 46_[+2]_24 chr2:71643967-71644067 2.3e-10 21_[-2]_49 chr12:99776445-99776545 3.9e-10 18_[+2]_52 chr16:91995287-91995387 4.7e-10 30_[-2]_40 chr19:7165831-7165931 5.6e-10 66_[+2]_4 chr5:27200356-27200456 1.8e-09 2_[+2]_68 chr1:69009533-69009633 1.8e-09 4_[+2]_66 chr4:68906895-68906995 2.8e-09 63_[+2]_7 chr1:165046229-165046329 7e-09 55_[+2]_15 chr2:92956058-92956158 8e-09 48_[+2]_22 chr17:87142348-87142448 2.5e-08 41_[-2]_29 chr2:82534251-82534351 3.7e-08 25_[-2]_45 chr6:121052157-121052257 5.4e-08 25_[-2]_45 chr19:23375002-23375102 6.2e-08 48_[-2]_22 chr4:152725830-152725930 9e-08 19_[+2]_51 chr12:76471891-76471991 1e-07 19_[-2]_51 chr1:165119434-165119534 1.3e-07 69_[+2]_1 chr9:48677431-48677531 2.1e-07 52_[+2]_18 chr18:52746757-52746857 2.6e-07 42_[+2]_28 chr12:12196609-12196709 3e-07 49_[+2]_21 chr9:67632594-67632694 3.3e-07 70_[-2] chr15:96012307-96012407 6.4e-07 24_[-2]_46 chr14:63743818-63743918 9.8e-07 10_[-2]_60 chr6:6816502-6816602 1.1e-06 56_[+2]_14 chr6:106916871-106916971 1.2e-06 47_[+2]_23 chr15:99498567-99498667 1.3e-06 12_[-2]_58 chr2:92059688-92059788 1.8e-06 63_[-2]_7 chr12:86824663-86824763 2.4e-06 68_[+2]_2 chr15:87543923-87544023 3.5e-06 54_[+2]_16 chr14:15411591-15411691 3.5e-06 36_[-2]_34 chr12:109399513-10939961 3.9e-06 24_[+2]_46 chr4:34274310-34274410 3.9e-06 64_[-2]_6 chr10:21095392-21095492 3.9e-06 21_[+2]_49 chr9:48740129-48740229 4.7e-06 14_[+2]_56 chr4:106838821-106838921 5.6e-06 2_[-2]_68 chr2:105616326-105616426 5.6e-06 1_[-2]_69 chr17:70471982-70472082 6.1e-06 40_[-2]_30 chr2:29541908-29542008 1e-05 14_[+2]_56 chr15:68363067-68363167 1.2e-05 65_[-2]_5 chr8:31032061-31032161 1.3e-05 66_[-2]_4 chr9:36922008-36922108 1.4e-05 17_[-2]_53 chr15:85670150-85670250 1.8e-05 24_[-2]_46 chr6:126563848-126563948 1.8e-05 42_[-2]_28 chr3:96414450-96414550 2e-05 54_[+2]_16 chr12:5227220-5227320 2e-05 12_[-2]_58 chr2:138406081-138406181 3.2e-05 5_[-2]_65 chr13:109487271-10948737 3.4e-05 44_[+2]_26 chr5:117000674-117000774 3.4e-05 22_[-2]_48 chr12:70404247-70404347 3.4e-05 47_[-2]_23 chr8:11173199-11173299 4.9e-05 63_[+2]_7 chr2:179582871-179582971 8e-05 60_[+2]_10 chr15:54952313-54952413 0.0001 38_[+2]_32 chr8:128654470-128654570 0.00013 [+2]_70 chr1:42538915-42539015 0.00017 36_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG width=30 seqs=54 chr12:89047778-89047878 ( 47) GGTGTGAGTGGGTGGGTGGGTGGGGGGGAG 1 chr2:71643967-71644067 ( 22) TGTGTGTGTGTGTGTGTGTGTGCGTGTGTG 1 chr12:99776445-99776545 ( 19) TGTGTGTGTGTGTGTGTGGCTGGCTGGCTG 1 chr16:91995287-91995387 ( 31) GGGGGGTGGGGAGGGGGCGGGGAGTGGGGG 1 chr19:7165831-7165931 ( 67) GGAGGCGGCGGGCGGGGAGGAGGCGGCGGG 1 chr5:27200356-27200456 ( 3) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr1:69009533-69009633 ( 5) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr4:68906895-68906995 ( 64) TGTGAGTGGGTGCGAATGGGAGCCTGTGAG 1 chr1:165046229-165046329 ( 56) TCACGGGGGGTGGGGGGGGGGGCCTTCCTG 1 chr2:92956058-92956158 ( 49) TGTGTGTGTCTGTGTGTGGGGAAATGTTTG 1 chr17:87142348-87142448 ( 42) GGGGGCGGGGCGAGGACAGGGGGAGGGGCG 1 chr2:82534251-82534351 ( 26) TGGGCGGGTTGGGGAGCAGGGCAGGTGGAG 1 chr6:121052157-121052257 ( 26) CCTGCATGGGGGCGGGGGGAGGAAGGTTGG 1 chr19:23375002-23375102 ( 49) GGGGTGTGGGAGTGGAGGTGGGGATCCGCC 1 chr4:152725830-152725930 ( 20) TGAGGCTGTTTGTTAACAGGGAACGGGCAG 1 chr12:76471891-76471991 ( 20) TGTGTGTGTGTGTGGGGGGGGATTGAACCC 1 chr1:165119434-165119534 ( 70) GCAGGGATGGTGGGGGCGGGGCGAGGGGGG 1 chr9:48677431-48677531 ( 53) TGCGCCTGCCTATGTGTGTGTACCTGCCTG 1 chr18:52746757-52746857 ( 43) TGTGCCGGCCTGTGCGGATGAAGTGGGGCG 1 chr12:12196609-12196709 ( 50) TGCGTCAGCCAGTGGAGCTGGCACGGGGAG 1 chr9:67632594-67632694 ( 71) CGGGTGGGGGGGCGGCGAAGAGCGGTGCAG 1 chr15:96012307-96012407 ( 25) AGGGAGTGGGGGTGTGTGGAGCGCTGATTC 1 chr14:63743818-63743918 ( 11) TGACACTGCTGGTGGGCAGTGGTGGGACAG 1 chr6:6816502-6816602 ( 57) TTCGTCTTGGGATGTGGGGGGACGGTGGTC 1 chr6:106916871-106916971 ( 48) GGAGTATGCGCATGTGCATGCGCATGCGTG 1 chr15:99498567-99498667 ( 13) GCCCTGAGTGGATGCAGGGGACCCTGTCTG 1 chr2:92059688-92059788 ( 64) GGCGAGTGGGAGGCGCCAGAGACAGAGGAG 1 chr12:86824663-86824763 ( 69) CGTGTCGGGTCATGTAGGGCAGACTGGTGG 1 chr15:87543923-87544023 ( 55) TGACGGGGCGCGCTGAGCCGGGGCGCGCAG 1 chr14:15411591-15411691 ( 37) GCAGTAGGGGAGGGAGGGGAGGCATGCAAG 1 chr12:109399513-10939961 ( 25) GGAGACACGCGGTTCGGGGAGCCCGTTGTG 1 chr4:34274310-34274410 ( 65) CTAGTCTCTTTATGTGGGTGGGAAGGACAG 1 chr10:21095392-21095492 ( 22) GCTCCGTGTTGGTGGAGATGGGCCGAGAAC 1 chr9:48740129-48740229 ( 15) AGGCTGTGCTAGCCAAGAGGGGGTGGGGCG 1 chr4:106838821-106838921 ( 3) AGGCCGCGCGGGTCTGCAGGAGGGGTGGAG 1 chr2:105616326-105616426 ( 2) GGCTCGGGTGGGAGTGGGGGCGAATTCGAG 1 chr17:70471982-70472082 ( 41) TGAGGATGGGCATGCCGGGGAATGAGTTAG 1 chr2:29541908-29542008 ( 15) TGTGGGTGTACATGTGGGGAGTGTGAGCCG 1 chr15:68363067-68363167 ( 66) CCCGCCTCTTAACGTGCCGAGGGGGGCGGG 1 chr8:31032061-31032161 ( 67) GGACAGTGGTGGTCGGTGGCCTACGGTTAG 1 chr9:36922008-36922108 ( 18) TGACGCTGCGCAGCCCCGGTGACGGGAGAG 1 chr15:85670150-85670250 ( 25) GCAGGAAGGGCGCGCGCATGGGCGACCCAG 1 chr6:126563848-126563948 ( 43) GGTGCCTTTGCAGCTAGGGCGACAGAGCGG 1 chr3:96414450-96414550 ( 55) TGAGGCTCGGGAACGCGCGGTGGCCCGCTG 1 chr12:5227220-5227320 ( 13) TGGGAGGGGTGGGCTGTGGACCGCCTGTTG 1 chr2:138406081-138406181 ( 6) GGAGACTGGGAGCATATGGAGAATGACGCG 1 chr13:109487271-10948737 ( 45) TCTGCCACTTTGTGACGAAAGACCGGGCTG 1 chr5:117000674-117000774 ( 23) GGCGCATGTGGGCTTCGGGCTCGCGCCTCC 1 chr12:70404247-70404347 ( 48) CCCCCGTTCCTGTGGGGGCGGGAGGCTTGG 1 chr8:11173199-11173299 ( 64) ACTCTCTGTGGACGCGGGTGAGTCACAGAG 1 chr2:179582871-179582971 ( 61) CGGGCGTCTCTGCTCCGCGATAGGCGCGAG 1 chr15:54952313-54952413 ( 39) TCGGCGTGGCGGCTCATGCTGCGGCGTCCG 1 chr8:128654470-128654570 ( 1) CGCGGCGCGGTGCTGCGATGGCAGCTTCAC 1 chr1:42538915-42539015 ( 37) TGGGCGGCGTTAGCAACGTGTACCGACGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.8171 E= 3.3e-005 -187 -63 54 71 -1240 -4 170 -287 13 -30 -4 13 -1240 -17 177 -387 -87 28 8 30 -129 62 123 -1240 -107 -362 8 117 -1240 -63 177 -187 -1240 -17 90 45 -387 -63 142 -29 -107 -46 70 30 3 -1240 166 -1240 -229 18 -30 88 -387 -46 158 -107 -107 -46 62 37 -7 -46 133 -1240 -1240 -4 123 -17 3 -104 142 -1240 -287 -204 150 -7 -41 -130 150 -229 -70 -162 133 -55 -7 -30 118 -287 -17 46 54 -129 -41 70 54 -155 -229 -130 128 13 -107 -82 133 -70 -129 8 83 -17 -287 46 108 -70 52 -30 -63 3 -1240 -63 190 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 54 E= 3.3e-005 0.074074 0.148148 0.333333 0.444444 0.000000 0.222222 0.740741 0.037037 0.296296 0.185185 0.222222 0.296296 0.000000 0.203704 0.777778 0.018519 0.148148 0.277778 0.240741 0.333333 0.111111 0.351852 0.537037 0.000000 0.129630 0.018519 0.240741 0.611111 0.000000 0.148148 0.777778 0.074074 0.000000 0.203704 0.425926 0.370370 0.018519 0.148148 0.611111 0.222222 0.129630 0.166667 0.370370 0.333333 0.277778 0.000000 0.722222 0.000000 0.055556 0.259259 0.185185 0.500000 0.018519 0.166667 0.685185 0.129630 0.129630 0.166667 0.351852 0.351852 0.259259 0.166667 0.574074 0.000000 0.000000 0.222222 0.537037 0.240741 0.277778 0.111111 0.611111 0.000000 0.037037 0.055556 0.648148 0.259259 0.203704 0.092593 0.648148 0.055556 0.166667 0.074074 0.574074 0.185185 0.259259 0.185185 0.518519 0.037037 0.240741 0.314815 0.333333 0.111111 0.203704 0.370370 0.333333 0.092593 0.055556 0.092593 0.555556 0.296296 0.129630 0.129630 0.574074 0.166667 0.111111 0.240741 0.407407 0.240741 0.037037 0.314815 0.481481 0.166667 0.388889 0.185185 0.148148 0.277778 0.000000 0.148148 0.851852 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGNGBSTGKGKGYGKGGGGGGRVVKGBSWG MEME-2 regular expression -------------------------------------------------------------------------------- [TG][GC][ATG][GC][TCG][GC][TG]G[GTC][GT][GT][GA][TC]G[GT][GA][GTC][GA][GT][GA]G[GA][GCA][CGA][GT]G[GCT][GC][AT]G -------------------------------------------------------------------------------- Time 653.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TRRCCACYAGRGGGCRSYAK MEME-3 width = 20 sites = 22 llr = 315 E-value = 4.8e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRRCCACYAGRGGGCRSYAK MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1352:9:19:41::16:16: pos.-specific C 21:8a:84::::::9:6311 probability G 145:::1:1a56a9:44114 matrix T 62:::1:5::12:1:::515 bits 2.1 * * * 1.9 * * * 1.7 * * * * 1.5 * * *** Relative 1.3 ** ** *** Entropy 1.1 ***** ** ***** (20.7 bits) 0.9 ***** ** ***** 0.6 ********* ***** 0.4 * *************** ** 0.2 ******************** 0.0 -------------------- Multilevel TGACCACTAGGGGGCACTAT consensus CAG C AT GGC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRCCACYAGRGGGCRSYAK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrX:51065750-51065850 + 28 9.32e-11 TGTCTATGAA TGGCCACTAGGTGGCACTAT CTGAGAGCAT chr11:8424153-8424253 + 44 6.70e-10 GAAGCTATGA TAGCCACTAGGGGGCAGGAT CACCTCACTG chr1:34700610-34700710 - 58 6.70e-10 GAACAGTCTA TCGCCACCAGAGGGCACCAG GGATCTCGCA chr18:25726715-25726815 - 64 1.95e-09 TTTCCAGATG TGGCCAGCAGAGGGCACCAG GACTACTGTG chr2:59438340-59438440 - 28 1.18e-08 TTCCTGCAGA TGACCACTAGAGGGCAGATG ATTTCCAGTT chr4:107652916-107653016 - 15 3.22e-08 GCCAGAGAAA TGGCCACAAGGGGCCGCTAG GACCCAACCC chr17:78163237-78163337 - 36 3.22e-08 TGAGTTCGGG CAACCACTAGGTGTCACTAT ACACAGGTCT chr2:164531095-164531195 - 77 4.84e-08 TCTA CTGCCACCAGAGGGCAGGCT TTTCAAGGCC chr8:84363667-84363767 + 34 8.64e-08 GTTCTGTGGC AGACCACCAGGAGGCGCTGT GGTCCACGAG chr5:82346618-82346718 - 29 1.04e-07 TGAGAATCCC TTAACACTGGGTGGCGCTAT AGACTAGCAG chr14:63759701-63759801 - 79 1.14e-07 TC CTGCCACTAGAGGGAGCTAC CTGGTGTAGA chr6:31938104-31938204 + 34 1.36e-07 ATTCATCATG CGAACAGCAGAGGGCGCTCG TGTCCTTGGA chr5:112848845-112848945 + 20 1.49e-07 TCTCCACCTA TAAACTCCAGGGGGCGCTCT TGGCCAGGCC chr7:82503997-82504097 + 41 1.93e-07 TACCATGGTC TCACCACACGGGGGCAGCAG AAGTGAAAGC chr16:50530059-50530159 + 22 1.93e-07 ATTGTTTGCG TGGCCGATAGGGGGCAGCAG TTGCACTGCG chr2:105616326-105616426 + 67 2.93e-07 TATTCAAATG CAAACACCAGGAGGCGCCTT TGCATTGTAG chr12:91314138-91314238 - 62 3.44e-07 GTATTGTTTT TGACCACTAGTCGTCAGTAT TGAACCATCA chr18:77226446-77226546 + 2 4.02e-07 A TAGCCATTAGGAGGCGGAAG GAGGTTTGGT chr2:92485569-92485669 + 29 4.02e-07 CATGGGCCCA GCGCCACTGGAGGGCAGCAC CAGCACAGAG chr8:54507710-54507810 + 30 4.35e-07 CCACCAGCTT ATACCACCAGAGGGCGCTTA AAGACAAGCT chr10:57001248-57001348 - 73 6.33e-07 GCATGAGT TGGTCAGTAGATGGCACTGT TTGTTACATT chr11:57477517-57477617 - 19 6.40e-06 GGAAACATGG GAACCTCTAGTTGGAAGGAG TGCCCTCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRCCACYAGRGGGCRSYAK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:51065750-51065850 9.3e-11 27_[+3]_53 chr11:8424153-8424253 6.7e-10 43_[+3]_37 chr1:34700610-34700710 6.7e-10 57_[-3]_23 chr18:25726715-25726815 2e-09 63_[-3]_17 chr2:59438340-59438440 1.2e-08 27_[-3]_53 chr4:107652916-107653016 3.2e-08 14_[-3]_66 chr17:78163237-78163337 3.2e-08 35_[-3]_45 chr2:164531095-164531195 4.8e-08 76_[-3]_4 chr8:84363667-84363767 8.6e-08 33_[+3]_47 chr5:82346618-82346718 1e-07 28_[-3]_52 chr14:63759701-63759801 1.1e-07 78_[-3]_2 chr6:31938104-31938204 1.4e-07 33_[+3]_47 chr5:112848845-112848945 1.5e-07 19_[+3]_61 chr7:82503997-82504097 1.9e-07 40_[+3]_40 chr16:50530059-50530159 1.9e-07 21_[+3]_59 chr2:105616326-105616426 2.9e-07 66_[+3]_14 chr12:91314138-91314238 3.4e-07 61_[-3]_19 chr18:77226446-77226546 4e-07 1_[+3]_79 chr2:92485569-92485669 4e-07 28_[+3]_52 chr8:54507710-54507810 4.3e-07 29_[+3]_51 chr10:57001248-57001348 6.3e-07 72_[-3]_8 chr11:57477517-57477617 6.4e-06 18_[-3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRCCACYAGRGGGCRSYAK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRRCCACYAGRGGGCRSYAK width=20 seqs=22 chrX:51065750-51065850 ( 28) TGGCCACTAGGTGGCACTAT 1 chr11:8424153-8424253 ( 44) TAGCCACTAGGGGGCAGGAT 1 chr1:34700610-34700710 ( 58) TCGCCACCAGAGGGCACCAG 1 chr18:25726715-25726815 ( 64) TGGCCAGCAGAGGGCACCAG 1 chr2:59438340-59438440 ( 28) TGACCACTAGAGGGCAGATG 1 chr4:107652916-107653016 ( 15) TGGCCACAAGGGGCCGCTAG 1 chr17:78163237-78163337 ( 36) CAACCACTAGGTGTCACTAT 1 chr2:164531095-164531195 ( 77) CTGCCACCAGAGGGCAGGCT 1 chr8:84363667-84363767 ( 34) AGACCACCAGGAGGCGCTGT 1 chr5:82346618-82346718 ( 29) TTAACACTGGGTGGCGCTAT 1 chr14:63759701-63759801 ( 79) CTGCCACTAGAGGGAGCTAC 1 chr6:31938104-31938204 ( 34) CGAACAGCAGAGGGCGCTCG 1 chr5:112848845-112848945 ( 20) TAAACTCCAGGGGGCGCTCT 1 chr7:82503997-82504097 ( 41) TCACCACACGGGGGCAGCAG 1 chr16:50530059-50530159 ( 22) TGGCCGATAGGGGGCAGCAG 1 chr2:105616326-105616426 ( 67) CAAACACCAGGAGGCGCCTT 1 chr12:91314138-91314238 ( 62) TGACCACTAGTCGTCAGTAT 1 chr18:77226446-77226546 ( 2) TAGCCATTAGGAGGCGGAAG 1 chr2:92485569-92485669 ( 29) GCGCCACTGGAGGGCAGCAC 1 chr8:54507710-54507810 ( 30) ATACCACCAGAGGGCGCTTA 1 chr10:57001248-57001348 ( 73) TGGTCAGTAGATGGCACTGT 1 chr11:57477517-57477617 ( 19) GAACCTCTAGTTGGAAGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRCCACYAGRGGGCRSYAK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 12.1354 E= 4.8e-008 -158 -1 -133 112 1 -74 84 -58 88 -1110 113 -1110 -58 176 -1110 -258 -1110 213 -1110 -1110 167 -1110 -233 -158 -258 176 -74 -258 -158 67 -1110 101 167 -233 -133 -1110 -1110 -1110 213 -1110 59 -1110 113 -158 -99 -233 137 -26 -1110 -1110 213 -1110 -1110 -233 192 -158 -158 199 -1110 -1110 112 -1110 84 -1110 -1110 137 84 -1110 -158 26 -74 88 123 -74 -133 -99 -258 -133 84 74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRCCACYAGRGGGCRSYAK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 22 E= 4.8e-008 0.090909 0.227273 0.090909 0.590909 0.272727 0.136364 0.409091 0.181818 0.500000 0.000000 0.500000 0.000000 0.181818 0.772727 0.000000 0.045455 0.000000 1.000000 0.000000 0.000000 0.863636 0.000000 0.045455 0.090909 0.045455 0.772727 0.136364 0.045455 0.090909 0.363636 0.000000 0.545455 0.863636 0.045455 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.409091 0.000000 0.500000 0.090909 0.136364 0.045455 0.590909 0.227273 0.000000 0.000000 1.000000 0.000000 0.000000 0.045455 0.863636 0.090909 0.090909 0.909091 0.000000 0.000000 0.590909 0.000000 0.409091 0.000000 0.000000 0.590909 0.409091 0.000000 0.090909 0.272727 0.136364 0.500000 0.636364 0.136364 0.090909 0.136364 0.045455 0.090909 0.409091 0.454545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRRCCACYAGRGGGCRSYAK MEME-3 regular expression -------------------------------------------------------------------------------- [TC][GA][AG]CCAC[TC]AG[GA][GT]GGC[AG][CG][TC]A[TG] -------------------------------------------------------------------------------- Time 950.18 secs. ******************************************************************************** ******************************************************************************** MOTIF MCAGGGCY MEME-4 width = 8 sites = 41 llr = 412 E-value = 7.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCAGGGCY MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3:a::::: pos.-specific C 7a::::a4 probability G :::aaa:: matrix T :::::::5 bits 2.1 * **** 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (14.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGGGCT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAGGGCY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr11:56351154-56351254 - 57 1.91e-05 TGGAGCCTGC CCAGGGCT TTTGTTTTGT chr5:54895168-54895268 + 71 1.91e-05 AAGTATTTCA CCAGGGCC TCTTTGGGAG chr11:52909814-52909914 + 42 1.91e-05 CTTATTAATG CCAGGGCC AGGGAGCAGA chr5:112848845-112848945 - 46 1.91e-05 CCCTGCACGG CCAGGGCC TGGCCAAGAG chr17:64077347-64077447 - 62 1.91e-05 GGAGCGCCAG CCAGGGCC TTGTATGCAC chr16:25406970-25407070 - 42 1.91e-05 CCAGAAGTTT CCAGGGCC TTGGGCTCTG chr12:5129194-5129294 - 66 1.91e-05 CAGTCATTGC CCAGGGCT TCAGATGCAG chr17:47038851-47038951 + 8 1.91e-05 CTCCTGT CCAGGGCT GGCATCCTCT chr11:71610702-71610802 - 87 1.91e-05 ATGACT CCAGGGCT GTCCAAATGA chr15:92621784-92621884 + 88 1.91e-05 TTTATCCTGC CCAGGGCT GGATC chr1:179848212-179848312 + 59 1.91e-05 ACTTCAGAAT CCAGGGCC TGCCCTAGCC chr5:36165882-36165982 + 46 1.91e-05 TGTGCTCCTG CCAGGGCC TGCCTGAGAC chr10:130259444-13025954 + 25 1.91e-05 GTGCTCCCTC CCAGGGCT GATTTTCTTT chr1:42395222-42395322 - 21 1.91e-05 CAGTGGAGCC CCAGGGCT TCAGCTGGAT chr16:27155807-27155907 - 14 1.91e-05 CTCTGTTTGT CCAGGGCC ATCGTTTGCA chr8:104146338-104146438 - 36 1.91e-05 CAAAGAATTC CCAGGGCC TGCCATCTAT chr9:14839508-14839608 - 37 1.91e-05 TGAGGAGCTA CCAGGGCT GGCTAAGAGC chr13:52288367-52288467 + 22 1.91e-05 GCTCTACAGC CCAGGGCC TGTAACAGGA chr15:28516951-28517051 - 49 1.91e-05 TCTGCTTCAC CCAGGGCT TTCATCCAAT chr3:36784611-36784711 + 73 1.91e-05 AGTGGCCTCT CCAGGGCT GGGAGTACAA chr9:12900889-12900989 - 6 1.91e-05 TGAAGCGAAG CCAGGGCT GTTCT chr9:48725928-48726028 + 36 1.91e-05 CAATCATTAG CCAGGGCC CAGGATGCAC chr2:82534251-82534351 - 68 1.91e-05 CAAGGGAATG CCAGGGCC AGGAAGTAGG chr9:69093862-69093962 + 10 1.91e-05 CCCAGGCTT CCAGGGCT GTTTGCGCAT chr10:122779329-12277942 + 56 1.91e-05 AGCCTGAGAG CCAGGGCC AGGGTGAGAT chr1:9627119-9627219 + 26 1.91e-05 AGGTATAATC CCAGGGCT TCCCTCCCGC chr5:91656384-91656484 - 26 4.19e-05 TTCCATCCCC ACAGGGCC ACAAATAGAA chr10:85320881-85320981 + 62 4.19e-05 CAGGGGCCTC ACAGGGCC TGCTGCTTCC chr3:53794353-53794453 - 81 4.19e-05 AGAGTCATCC ACAGGGCT TTTAGCCTGC chr18:71739844-71739944 + 52 4.19e-05 aggatggaac acagggcc cctaatgaag chr11:119126368-11912646 + 40 4.19e-05 GCTGTGACTC ACAGGGCT GGCCTCGGGC chr11:81816463-81816563 - 13 4.19e-05 GTAAACACAT ACAGGGCT ATTTCCAGCT chr3:83797785-83797885 - 91 4.19e-05 CT ACAGGGCC TGGAAGGAGC chr6:88785216-88785316 + 15 4.19e-05 TTCTGCCACC ACAGGGCT CAAACTGCAG chr2:57861367-57861467 - 7 4.19e-05 TTTAGACATA ACAGGGCT CAACCA chr13:111323112-11132321 - 35 4.19e-05 TTACCTAAGC ACAGGGCT GAGGACGAGG chr11:31606836-31606936 + 46 4.19e-05 TTTTACAGGG ACAGGGCT GTCATCTGGC chr7:91263146-91263246 + 27 4.19e-05 CACCCCTGAA ACAGGGCT GTGGGCTAAT chr15:67031784-67031884 + 38 4.19e-05 CTCATATGGC ACAGGGCC ATTACACAGA chr14:112205373-11220547 - 57 4.19e-05 TTTTCAAAAC ACAGGGCT GATGATTACA chr15:30490780-30490880 + 16 5.06e-05 AGAAAAAGAA CCAGGGCG TAAGGCTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAGGGCY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:56351154-56351254 1.9e-05 56_[-4]_36 chr5:54895168-54895268 1.9e-05 70_[+4]_22 chr11:52909814-52909914 1.9e-05 41_[+4]_51 chr5:112848845-112848945 1.9e-05 45_[-4]_47 chr17:64077347-64077447 1.9e-05 61_[-4]_31 chr16:25406970-25407070 1.9e-05 41_[-4]_51 chr12:5129194-5129294 1.9e-05 65_[-4]_27 chr17:47038851-47038951 1.9e-05 7_[+4]_85 chr11:71610702-71610802 1.9e-05 86_[-4]_6 chr15:92621784-92621884 1.9e-05 87_[+4]_5 chr1:179848212-179848312 1.9e-05 58_[+4]_34 chr5:36165882-36165982 1.9e-05 45_[+4]_47 chr10:130259444-13025954 1.9e-05 24_[+4]_68 chr1:42395222-42395322 1.9e-05 20_[-4]_72 chr16:27155807-27155907 1.9e-05 13_[-4]_79 chr8:104146338-104146438 1.9e-05 35_[-4]_57 chr9:14839508-14839608 1.9e-05 36_[-4]_56 chr13:52288367-52288467 1.9e-05 21_[+4]_71 chr15:28516951-28517051 1.9e-05 48_[-4]_44 chr3:36784611-36784711 1.9e-05 72_[+4]_20 chr9:12900889-12900989 1.9e-05 5_[-4]_87 chr9:48725928-48726028 1.9e-05 35_[+4]_57 chr2:82534251-82534351 1.9e-05 67_[-4]_25 chr9:69093862-69093962 1.9e-05 9_[+4]_83 chr10:122779329-12277942 1.9e-05 55_[+4]_37 chr1:9627119-9627219 1.9e-05 25_[+4]_67 chr5:91656384-91656484 4.2e-05 25_[-4]_67 chr10:85320881-85320981 4.2e-05 61_[+4]_31 chr3:53794353-53794453 4.2e-05 80_[-4]_12 chr18:71739844-71739944 4.2e-05 51_[+4]_41 chr11:119126368-11912646 4.2e-05 39_[+4]_53 chr11:81816463-81816563 4.2e-05 12_[-4]_80 chr3:83797785-83797885 4.2e-05 90_[-4]_2 chr6:88785216-88785316 4.2e-05 14_[+4]_78 chr2:57861367-57861467 4.2e-05 6_[-4]_86 chr13:111323112-11132321 4.2e-05 34_[-4]_58 chr11:31606836-31606936 4.2e-05 45_[+4]_47 chr7:91263146-91263246 4.2e-05 26_[+4]_66 chr15:67031784-67031884 4.2e-05 37_[+4]_55 chr14:112205373-11220547 4.2e-05 56_[-4]_36 chr15:30490780-30490880 5.1e-05 15_[+4]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAGGGCY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCAGGGCY width=8 seqs=41 chr11:56351154-56351254 ( 57) CCAGGGCT 1 chr5:54895168-54895268 ( 71) CCAGGGCC 1 chr11:52909814-52909914 ( 42) CCAGGGCC 1 chr5:112848845-112848945 ( 46) CCAGGGCC 1 chr17:64077347-64077447 ( 62) CCAGGGCC 1 chr16:25406970-25407070 ( 42) CCAGGGCC 1 chr12:5129194-5129294 ( 66) CCAGGGCT 1 chr17:47038851-47038951 ( 8) CCAGGGCT 1 chr11:71610702-71610802 ( 87) CCAGGGCT 1 chr15:92621784-92621884 ( 88) CCAGGGCT 1 chr1:179848212-179848312 ( 59) CCAGGGCC 1 chr5:36165882-36165982 ( 46) CCAGGGCC 1 chr10:130259444-13025954 ( 25) CCAGGGCT 1 chr1:42395222-42395322 ( 21) CCAGGGCT 1 chr16:27155807-27155907 ( 14) CCAGGGCC 1 chr8:104146338-104146438 ( 36) CCAGGGCC 1 chr9:14839508-14839608 ( 37) CCAGGGCT 1 chr13:52288367-52288467 ( 22) CCAGGGCC 1 chr15:28516951-28517051 ( 49) CCAGGGCT 1 chr3:36784611-36784711 ( 73) CCAGGGCT 1 chr9:12900889-12900989 ( 6) CCAGGGCT 1 chr9:48725928-48726028 ( 36) CCAGGGCC 1 chr2:82534251-82534351 ( 68) CCAGGGCC 1 chr9:69093862-69093962 ( 10) CCAGGGCT 1 chr10:122779329-12277942 ( 56) CCAGGGCC 1 chr1:9627119-9627219 ( 26) CCAGGGCT 1 chr5:91656384-91656484 ( 26) ACAGGGCC 1 chr10:85320881-85320981 ( 62) ACAGGGCC 1 chr3:53794353-53794453 ( 81) ACAGGGCT 1 chr18:71739844-71739944 ( 52) ACAGGGCC 1 chr11:119126368-11912646 ( 40) ACAGGGCT 1 chr11:81816463-81816563 ( 13) ACAGGGCT 1 chr3:83797785-83797885 ( 91) ACAGGGCC 1 chr6:88785216-88785316 ( 15) ACAGGGCT 1 chr2:57861367-57861467 ( 7) ACAGGGCT 1 chr13:111323112-11132321 ( 35) ACAGGGCT 1 chr11:31606836-31606936 ( 46) ACAGGGCT 1 chr7:91263146-91263246 ( 27) ACAGGGCT 1 chr15:67031784-67031884 ( 38) ACAGGGCC 1 chr14:112205373-11220547 ( 57) ACAGGGCT 1 chr15:30490780-30490880 ( 16) CCAGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAGGGCY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 12.2567 E= 7.1e-005 33 153 -1200 -1200 -1200 213 -1200 -1200 188 -1200 -1200 -1200 -1200 -1200 213 -1200 -1200 -1200 213 -1200 -1200 -1200 213 -1200 -1200 213 -1200 -1200 -1200 94 -322 98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAGGGCY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 7.1e-005 0.341463 0.658537 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.439024 0.024390 0.536585 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAGGGCY MEME-4 regular expression -------------------------------------------------------------------------------- [CA]CAGGGC[TC] -------------------------------------------------------------------------------- Time 1243.60 secs. ******************************************************************************** ******************************************************************************** MOTIF MCAYCTGCAG MEME-5 width = 10 sites = 30 llr = 318 E-value = 6.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCAYCTGCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 5:a:1:::8: pos.-specific C 5a:581:a:: probability G ::::1:a::9 matrix T :::4:9::21 bits 2.1 ** 1.9 ** ** 1.7 ** ** 1.5 ** ** * Relative 1.3 ** ****** Entropy 1.1 *** ****** (15.3 bits) 0.9 ********** 0.6 ********** 0.4 ********** 0.2 ********** 0.0 ---------- Multilevel ACACCTGCAG consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAYCTGCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------- chr18:9494901-9495001 + 16 1.41e-06 ctacgggcct acacctgcag ccaggaggtg chr4:107652916-107653016 - 64 1.41e-06 AGGTTTCTTC CCACCTGCAG GTGCAGGCTG chr1:42395222-42395322 + 72 1.41e-06 GGACTTGGGA ACACCTGCAG CCCTTCCTCT chr19:48349932-48350032 + 71 1.41e-06 TCATCGTCTA CCACCTGCAG GACCTTGAGG chr4:22998743-22998843 - 90 3.10e-06 A ACATCTGCAG CCTCACTTCA chr19:52112408-52112508 - 24 3.10e-06 AAAATGAAAA CCATCTGCAG GAAAATTCAC chr8:120413180-120413280 + 57 3.10e-06 AAGGTAGCAG CCATCTGCAG TGTGATAAAA chr13:52288367-52288467 + 40 3.10e-06 TGTAACAGGA ACATCTGCAG CTGCTCTTGA chr13:85885013-85885113 - 73 3.10e-06 TATAAAGCAT ACATCTGCAG GAACAAAGGG chr1:170478188-170478288 - 61 3.10e-06 CAAGCCACAG CCATCTGCAG GCCCAGAAGA chr4:120189879-120189979 - 27 3.10e-06 ACCTGCCTGC CCATCTGCAG GCAGACAAAG chr12:58556056-58556156 + 12 3.10e-06 GGAAGAAAGA ACATCTGCAG AGAGATTtat chr3:105374262-105374362 - 64 4.51e-06 CTTTAGGAAA ACACCTGCTG GAGTTGGAAC chr15:28516951-28517051 + 88 4.51e-06 TATAGTCTCG CCACCTGCTG TGG chr13:54116269-54116369 - 54 7.89e-06 GGCTTTAGGG ACATCTGCTG CCTGCCTTGG chr10:43124519-43124619 - 69 7.89e-06 TGTCTGAGCA ACACCTGCAT TTGTGAATGT chr2:49922684-49922784 + 70 7.89e-06 GAAATGATTG CCATCTGCTG ACTCACCCAC chr5:27200356-27200456 + 74 7.89e-06 TTCACACATC ACACCTGCAT GGCCCACATT chr18:41559086-41559186 + 23 7.89e-06 ACAATTGCTC ACACCTGCAT GGCCTGGTCC chr12:30632749-30632849 - 65 7.89e-06 CTTCATCGCC ACATCTGCTG ATGCAGAGCT chr15:60573114-60573214 + 51 7.89e-06 gggaattttg ccacctgcat ttggttgagt chr10:99678124-99678224 + 80 1.42e-05 AAGCAAGAAT ACACCCGCAG AGCTTTTGAT chr9:112130749-112130849 - 79 1.42e-05 GGCTCCACCC CCACCCGCAG TCTGCCTCAG chr5:22312910-22313010 + 25 1.42e-05 ctagccgcca ccatgtgcag acgagatgag chr6:6816502-6816602 + 43 1.42e-05 GTGTGCACCA CCATGTGCAG CTGATTCGTC chr19:48463424-48463524 - 19 1.59e-05 GCATGGAGCC ACACATGCAG GGGAGCTGAG chr14:71777126-71777226 - 48 1.59e-05 AGTTGGTGGA ACACATGCAG ATTCAATTGG chr1:128539513-128539613 + 25 1.73e-05 TAAGAAGCCT CCAGCTGCAG CAGCACAGGC chr14:123065563-12306566 - 45 2.19e-05 GCTCATTGAA CCACCGGCAG TTTGTTTGCA chr13:74617450-74617550 + 47 8.18e-05 ACTCCAAAAC AAACGTGCAG GAAGCCACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAYCTGCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:9494901-9495001 1.4e-06 15_[+5]_75 chr4:107652916-107653016 1.4e-06 63_[-5]_27 chr1:42395222-42395322 1.4e-06 71_[+5]_19 chr19:48349932-48350032 1.4e-06 70_[+5]_20 chr4:22998743-22998843 3.1e-06 89_[-5]_1 chr19:52112408-52112508 3.1e-06 23_[-5]_67 chr8:120413180-120413280 3.1e-06 56_[+5]_34 chr13:52288367-52288467 3.1e-06 39_[+5]_51 chr13:85885013-85885113 3.1e-06 72_[-5]_18 chr1:170478188-170478288 3.1e-06 60_[-5]_30 chr4:120189879-120189979 3.1e-06 26_[-5]_64 chr12:58556056-58556156 3.1e-06 11_[+5]_79 chr3:105374262-105374362 4.5e-06 63_[-5]_27 chr15:28516951-28517051 4.5e-06 87_[+5]_3 chr13:54116269-54116369 7.9e-06 53_[-5]_37 chr10:43124519-43124619 7.9e-06 68_[-5]_22 chr2:49922684-49922784 7.9e-06 69_[+5]_21 chr5:27200356-27200456 7.9e-06 73_[+5]_17 chr18:41559086-41559186 7.9e-06 22_[+5]_68 chr12:30632749-30632849 7.9e-06 64_[-5]_26 chr15:60573114-60573214 7.9e-06 50_[+5]_40 chr10:99678124-99678224 1.4e-05 79_[+5]_11 chr9:112130749-112130849 1.4e-05 78_[-5]_12 chr5:22312910-22313010 1.4e-05 24_[+5]_66 chr6:6816502-6816602 1.4e-05 42_[+5]_48 chr19:48463424-48463524 1.6e-05 18_[-5]_72 chr14:71777126-71777226 1.6e-05 47_[-5]_43 chr1:128539513-128539613 1.7e-05 24_[+5]_66 chr14:123065563-12306566 2.2e-05 44_[-5]_46 chr13:74617450-74617550 8.2e-05 46_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAYCTGCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCAYCTGCAG width=10 seqs=30 chr18:9494901-9495001 ( 16) ACACCTGCAG 1 chr4:107652916-107653016 ( 64) CCACCTGCAG 1 chr1:42395222-42395322 ( 72) ACACCTGCAG 1 chr19:48349932-48350032 ( 71) CCACCTGCAG 1 chr4:22998743-22998843 ( 90) ACATCTGCAG 1 chr19:52112408-52112508 ( 24) CCATCTGCAG 1 chr8:120413180-120413280 ( 57) CCATCTGCAG 1 chr13:52288367-52288467 ( 40) ACATCTGCAG 1 chr13:85885013-85885113 ( 73) ACATCTGCAG 1 chr1:170478188-170478288 ( 61) CCATCTGCAG 1 chr4:120189879-120189979 ( 27) CCATCTGCAG 1 chr12:58556056-58556156 ( 12) ACATCTGCAG 1 chr3:105374262-105374362 ( 64) ACACCTGCTG 1 chr15:28516951-28517051 ( 88) CCACCTGCTG 1 chr13:54116269-54116369 ( 54) ACATCTGCTG 1 chr10:43124519-43124619 ( 69) ACACCTGCAT 1 chr2:49922684-49922784 ( 70) CCATCTGCTG 1 chr5:27200356-27200456 ( 74) ACACCTGCAT 1 chr18:41559086-41559186 ( 23) ACACCTGCAT 1 chr12:30632749-30632849 ( 65) ACATCTGCTG 1 chr15:60573114-60573214 ( 51) CCACCTGCAT 1 chr10:99678124-99678224 ( 80) ACACCCGCAG 1 chr9:112130749-112130849 ( 79) CCACCCGCAG 1 chr5:22312910-22313010 ( 25) CCATGTGCAG 1 chr6:6816502-6816602 ( 43) CCATGTGCAG 1 chr19:48463424-48463524 ( 19) ACACATGCAG 1 chr14:71777126-71777226 ( 48) ACACATGCAG 1 chr1:128539513-128539613 ( 25) CCAGCTGCAG 1 chr14:123065563-12306566 ( 45) CCACCGGCAG 1 chr13:74617450-74617550 ( 47) AAACGTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAYCTGCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 54600 bayes= 11.5035 E= 6.8e+001 97 103 -1155 -1155 -302 208 -1155 -1155 188 -1155 -1155 -1155 -1155 122 -277 67 -202 187 -119 -1155 -1155 -178 -277 173 -1155 -1155 213 -1155 -1155 213 -1155 -1155 162 -1155 -1155 -70 -1155 -1155 192 -103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAYCTGCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 30 E= 6.8e+001 0.533333 0.466667 0.000000 0.000000 0.033333 0.966667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.533333 0.033333 0.433333 0.066667 0.833333 0.100000 0.000000 0.000000 0.066667 0.033333 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.866667 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCAYCTGCAG MEME-5 regular expression -------------------------------------------------------------------------------- [AC]CA[CT]CTGCAG -------------------------------------------------------------------------------- Time 1535.35 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCYBCYTCCCTGYCTCYHDGCC MEME-6 width = 24 sites = 7 llr = 147 E-value = 4.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCYBCYTCCCTGYCTCYHDGCC MEME-6 Description -------------------------------------------------------------------------------- Simplified A :3:::::::::1::1::1:43::: pos.-specific C a71943a63a79:3391963:1a7 probability G ::::13:::::::71:::1:39:3 matrix T ::9144:47:3:a:419:334::: bits 2.1 * * * * 1.9 * * * * * 1.7 * * * * * 1.5 * * * * ** * * ** Relative 1.3 **** * ***** *** *** Entropy 1.1 **** ******** *** *** (30.3 bits) 0.9 **** ******** *** *** 0.6 ***** ******** **** *** 0.4 ************** ********* 0.2 ************************ 0.0 ------------------------ Multilevel CCTCCTCCTCCCTGTCTCCATGCC consensus A TC TC T CC TCA G sequence G TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYBCYTCCCTGYCTCYHDGCC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chr1:68244312-68244412 - 10 8.63e-12 TCTGCCTCAG CCTCTGCCTCTCTGCCTCTCTGCC TCTCTGTCT chr9:95181519-95181619 + 72 4.29e-11 TAATTCAAAC CATCCTCTCCCCTCTCTCCCAGCC CATTC chr10:76653897-76653997 - 59 6.37e-11 TGTCCCGATC CCTTTCCCTCCCTGGCTCTAGGCC CAGTTTACCC chr9:27996465-27996565 + 27 8.47e-11 TTCACTGCTC CCTCTGCTTCCCTGTCTAGAAGCC TACTGCTGGA chr19:10424099-10424199 - 68 2.94e-10 AGGGGTGCA CACCGTCTTCTCTGTCTCCTTGCC GACCTCATTT chr7:125888287-125888387 + 7 4.84e-10 TGACAC CCTCCTCCCCCATGCCTCCTGCCG GCAAGCTGTG chr17:49816193-49816293 - 24 6.70e-10 GATGCTCTCC CCTCCCCCTCCCTCATCCCATGCG CTTGGATCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYBCYTCCCTGYCTCYHDGCC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:68244312-68244412 8.6e-12 9_[-6]_67 chr9:95181519-95181619 4.3e-11 71_[+6]_5 chr10:76653897-76653997 6.4e-11 58_[-6]_18 chr9:27996465-27996565 8.5e-11 26_[+6]_50 chr19:10424099-10424199 2.9e-10 67_[-6]_9 chr7:125888287-125888387 4.8e-10 6_[+6]_70 chr17:49816193-49816293 6.7e-10 23_[-6]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYBCYTCCCTGYCTCYHDGCC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCYBCYTCCCTGYCTCYHDGCC width=24 seqs=7 chr1:68244312-68244412 ( 10) CCTCTGCCTCTCTGCCTCTCTGCC 1 chr9:95181519-95181619 ( 72) CATCCTCTCCCCTCTCTCCCAGCC 1 chr10:76653897-76653997 ( 59) CCTTTCCCTCCCTGGCTCTAGGCC 1 chr9:27996465-27996565 ( 27) CCTCTGCTTCCCTGTCTAGAAGCC 1 chr19:10424099-10424199 ( 68) CACCGTCTTCTCTGTCTCCTTGCC 1 chr7:125888287-125888387 ( 7) CCTCCTCCCCCATGCCTCCTGCCG 1 chr17:49816193-49816293 ( 24) CCTCCCCCTCCCTCATCCCATGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYBCYTCCCTGYCTCYHDGCC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 46200 bayes= 10.7399 E= 4.7e+003 -945 213 -945 -945 7 164 -945 -945 -945 -68 -945 166 -945 191 -945 -92 -945 91 -68 66 -945 32 32 66 -945 213 -945 -945 -945 132 -945 66 -945 32 -945 139 -945 213 -945 -945 -945 164 -945 7 -92 191 -945 -945 -945 -945 -945 188 -945 32 164 -945 -92 32 -68 66 -945 191 -945 -92 -945 -68 -945 166 -92 191 -945 -945 -945 132 -68 7 66 32 -945 7 7 -945 32 66 -945 -68 191 -945 -945 213 -945 -945 -945 164 32 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYBCYTCCCTGYCTCYHDGCC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 7 E= 4.7e+003 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.857143 0.000000 0.142857 0.000000 0.428571 0.142857 0.428571 0.000000 0.285714 0.285714 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.285714 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.142857 0.857143 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.714286 0.000000 0.142857 0.285714 0.142857 0.428571 0.000000 0.857143 0.000000 0.142857 0.000000 0.142857 0.000000 0.857143 0.142857 0.857143 0.000000 0.000000 0.000000 0.571429 0.142857 0.285714 0.428571 0.285714 0.000000 0.285714 0.285714 0.000000 0.285714 0.428571 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYBCYTCCCTGYCTCYHDGCC MEME-6 regular expression -------------------------------------------------------------------------------- C[CA]TC[CT][TCG]C[CT][TC]C[CT]CT[GC][TC]CTC[CT][ACT][TAG]GC[CG] -------------------------------------------------------------------------------- Time 1823.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCGCCACGCC MEME-7 width = 11 sites = 2 llr = 32 E-value = 6.7e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGCCACGCC MEME-7 Description -------------------------------------------------------------------------------- Simplified A ::::::a:::: pos.-specific C aaa:aa:a:aa probability G :::a::::a:: matrix T ::::::::::: bits 2.1 ****** **** 1.9 *********** 1.7 *********** 1.5 *********** Relative 1.3 *********** Entropy 1.1 *********** (23.2 bits) 0.9 *********** 0.6 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CCCGCCACGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCACGCC MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr15:87543923-87544023 + 11 1.03e-07 AGTGCGAGGC CCCGCCACGCC GGGCACGCGC chr9:14839508-14839608 + 1 1.03e-07 . CCCGCCACGCC TTGCTGGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCACGCC MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:87543923-87544023 1e-07 10_[+7]_79 chr9:14839508-14839608 1e-07 [+7]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCACGCC MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGCCACGCC width=11 seqs=2 chr15:87543923-87544023 ( 11) CCCGCCACGCC 1 chr9:14839508-14839608 ( 1) CCCGCCACGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCACGCC MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 14.7206 E= 6.7e+006 -765 212 -765 -765 -765 212 -765 -765 -765 212 -765 -765 -765 -765 212 -765 -765 212 -765 -765 -765 212 -765 -765 188 -765 -765 -765 -765 212 -765 -765 -765 -765 212 -765 -765 212 -765 -765 -765 212 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCACGCC MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 2 E= 6.7e+006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCACGCC MEME-7 regular expression -------------------------------------------------------------------------------- CCCGCCACGCC -------------------------------------------------------------------------------- Time 2116.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTGSCWGGCYCNSWGSWGCA MEME-8 width = 21 sites = 22 llr = 285 E-value = 2.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTGSCWGGCYCNSWGSWGCA MEME-8 Description -------------------------------------------------------------------------------- Simplified A 2:::::4:2:::2:4114217 pos.-specific C 592:5a12:838251142:9: probability G ::295::6511235:8328:1 matrix T 2151::512:5:3:5:12::2 bits 2.1 * 1.9 * 1.7 * * 1.5 * * * * ** Relative 1.3 * * * * * ** Entropy 1.1 * *** * * * * ** (18.7 bits) 0.9 * *** * * * * * ** 0.6 * *** *** * * * *** 0.4 ************ *** *** 0.2 ************ **** *** 0.0 --------------------- Multilevel CCTGCCTGGCTCTCTGCAGCA consensus A C G ACA C GGA GT T sequence T G T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGSCWGGCYCNSWGSWGCA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr2:48063404-48063504 - 22 7.00e-09 GCTGGGATTC TCTGGCTGACTCCCAGGCGCA ACTGTGAAGC chr12:70498259-70498359 - 76 1.82e-08 TCTC TCTGCCTGGCTCGCAGATGCT TGCCTGCCAT chr2:20249416-20249516 + 6 2.07e-08 GGCAC GCTGGCTGGCTGGCAGCAGCA CACATTTTAT chr17:13703550-13703650 - 1 2.67e-08 CCAATTGTGG ACCGCCAGACCCTGTGGGGCA chr1:105486905-105487005 + 58 3.02e-08 gccagctggg ttgggctggctcactggagca gctagactac chr17:4907017-4907117 + 37 4.33e-08 TGGTCTGCCG ACTGCCTCTCTGGCAGCAGCA CACACAGAAA chr6:31332122-31332222 - 73 7.67e-08 ATGACTC ACGGGCTGACTCAGAGGAACA GGGCGAACAA chr7:125888287-125888387 + 41 1.31e-07 GCAAGCTGTG CCCGGCAGGATCTGAGCAGCT GCTTCATGAG chr7:76788477-76788577 + 41 1.46e-07 ATATTGACCT CCAGCCAGTCCCTGTGTAGCA AGCAGCCTGA chr14:24733267-24733367 + 35 1.46e-07 CTGTTTTGGT CCTGGCTGGCCCAGTGCTGAG ATCTTCTTAC chr3:103419614-103419714 + 44 1.79e-07 GTGTGTGATC TCTGCCAGACCCGCTAGCGCA GAGCTCCTTT chr6:88785216-88785316 - 28 4.24e-07 CGGGCTGGTC CCTTCCTGGTCCCGTGCTGCA GTTTGAGCCC chr15:30383089-30383189 - 41 4.65e-07 AGTTGTTGAG CCGGGCTTGCTGAGTGGCACA TTCCTGTGGG chr19:7165831-7165931 - 33 6.07e-07 TCCGCTCCCG CCCTCCCCGCTCCGCGCTGCA CGCACAGCCC chr10:121889934-12189003 + 12 7.22e-07 ctctgcctct cCTGGCATACTCTCTAAGGCA GAGGTCCAGA chr8:14601282-14601382 - 74 1.01e-06 ATTCTC TCTGCCTCGCACGCTCCAGCT GTTAGCTGCA chr17:47038851-47038951 + 30 1.19e-06 TCCTCTCAGG CTCGCCTTTCTCGGTGGGGCT GGGCTTTCTT chr16:87645488-87645588 - 13 2.05e-06 GTCAAGGAGG ACTGCCCCGCTCTCCGAGGAA AGTGACAGGC chr15:36652216-36652316 - 5 3.40e-06 CACTGGCTCA CCGGGCACTCGCTCACTAGCT CACT chr5:112848845-112848945 + 54 4.18e-06 CAGGCCCTGG CCGTGCAGGGGCCCAGCTACA GGTCTGTCAG chr6:99485496-99485596 + 76 4.47e-06 CTTATTGAAA ACTGGCAGTCGCTCTGTAATA GGCA chr4:106838821-106838921 + 79 7.48e-06 CGCCACTTCC CCCGCCCGGGCGAGCGCCGCG A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGSCWGGCYCNSWGSWGCA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:48063404-48063504 7e-09 21_[-8]_58 chr12:70498259-70498359 1.8e-08 75_[-8]_4 chr2:20249416-20249516 2.1e-08 5_[+8]_74 chr17:13703550-13703650 2.7e-08 [-8]_79 chr1:105486905-105487005 3e-08 57_[+8]_22 chr17:4907017-4907117 4.3e-08 36_[+8]_43 chr6:31332122-31332222 7.7e-08 72_[-8]_7 chr7:125888287-125888387 1.3e-07 40_[+8]_39 chr7:76788477-76788577 1.5e-07 40_[+8]_39 chr14:24733267-24733367 1.5e-07 34_[+8]_45 chr3:103419614-103419714 1.8e-07 43_[+8]_36 chr6:88785216-88785316 4.2e-07 27_[-8]_52 chr15:30383089-30383189 4.6e-07 40_[-8]_39 chr19:7165831-7165931 6.1e-07 32_[-8]_47 chr10:121889934-12189003 7.2e-07 11_[+8]_68 chr8:14601282-14601382 1e-06 73_[-8]_6 chr17:47038851-47038951 1.2e-06 29_[+8]_50 chr16:87645488-87645588 2e-06 12_[-8]_67 chr15:36652216-36652316 3.4e-06 4_[-8]_75 chr5:112848845-112848945 4.2e-06 53_[+8]_26 chr6:99485496-99485596 4.5e-06 75_[+8]_4 chr4:106838821-106838921 7.5e-06 78_[+8]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGSCWGGCYCNSWGSWGCA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTGSCWGGCYCNSWGSWGCA width=21 seqs=22 chr2:48063404-48063504 ( 22) TCTGGCTGACTCCCAGGCGCA 1 chr12:70498259-70498359 ( 76) TCTGCCTGGCTCGCAGATGCT 1 chr2:20249416-20249516 ( 6) GCTGGCTGGCTGGCAGCAGCA 1 chr17:13703550-13703650 ( 1) ACCGCCAGACCCTGTGGGGCA 1 chr1:105486905-105487005 ( 58) TTGGGCTGGCTCACTGGAGCA 1 chr17:4907017-4907117 ( 37) ACTGCCTCTCTGGCAGCAGCA 1 chr6:31332122-31332222 ( 73) ACGGGCTGACTCAGAGGAACA 1 chr7:125888287-125888387 ( 41) CCCGGCAGGATCTGAGCAGCT 1 chr7:76788477-76788577 ( 41) CCAGCCAGTCCCTGTGTAGCA 1 chr14:24733267-24733367 ( 35) CCTGGCTGGCCCAGTGCTGAG 1 chr3:103419614-103419714 ( 44) TCTGCCAGACCCGCTAGCGCA 1 chr6:88785216-88785316 ( 28) CCTTCCTGGTCCCGTGCTGCA 1 chr15:30383089-30383189 ( 41) CCGGGCTTGCTGAGTGGCACA 1 chr19:7165831-7165931 ( 33) CCCTCCCCGCTCCGCGCTGCA 1 chr10:121889934-12189003 ( 12) CCTGGCATACTCTCTAAGGCA 1 chr8:14601282-14601382 ( 74) TCTGCCTCGCACGCTCCAGCT 1 chr17:47038851-47038951 ( 30) CTCGCCTTTCTCGGTGGGGCT 1 chr16:87645488-87645588 ( 13) ACTGCCCCGCTCTCCGAGGAA 1 chr15:36652216-36652316 ( 5) CCGGGCACTCGCTCACTAGCT 1 chr5:112848845-112848945 ( 54) CCGTGCAGGGGCCCAGCTACA 1 chr6:99485496-99485596 ( 76) ACTGGCAGTCGCTCTGTAATA 1 chr4:106838821-106838921 ( 79) CCCGCCCGGGCGAGCGCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGSCWGGCYCNSWGSWGCA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.4459 E= 2.4e+005 -26 113 -233 -26 -1110 199 -1110 -158 -258 -1 -1 88 -1110 -1110 192 -99 -1110 113 113 -1110 -1110 213 -1110 -1110 42 -74 -1110 88 -1110 -1 148 -99 -26 -1110 125 -26 -258 184 -133 -258 -258 26 -74 101 -1110 184 -33 -1110 -26 -33 26 23 -1110 125 99 -1110 42 -74 -1110 88 -158 -133 184 -1110 -99 84 48 -99 59 -33 -33 -26 -58 -1110 184 -1110 -158 192 -1110 -258 133 -1110 -133 -26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGSCWGGCYCNSWGSWGCA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 22 E= 2.4e+005 0.227273 0.500000 0.045455 0.227273 0.000000 0.909091 0.000000 0.090909 0.045455 0.227273 0.227273 0.500000 0.000000 0.000000 0.863636 0.136364 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.136364 0.000000 0.500000 0.000000 0.227273 0.636364 0.136364 0.227273 0.000000 0.545455 0.227273 0.045455 0.818182 0.090909 0.045455 0.045455 0.272727 0.136364 0.545455 0.000000 0.818182 0.181818 0.000000 0.227273 0.181818 0.272727 0.318182 0.000000 0.545455 0.454545 0.000000 0.363636 0.136364 0.000000 0.500000 0.090909 0.090909 0.818182 0.000000 0.136364 0.409091 0.318182 0.136364 0.409091 0.181818 0.181818 0.227273 0.181818 0.000000 0.818182 0.000000 0.090909 0.863636 0.000000 0.045455 0.681818 0.000000 0.090909 0.227273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGSCWGGCYCNSWGSWGCA MEME-8 regular expression -------------------------------------------------------------------------------- [CAT]C[TCG]G[CG]C[TA][GC][GAT]C[TC]C[TGA][CG][TA]G[CG][AT]GC[AT] -------------------------------------------------------------------------------- Time 2402.69 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGTTKCCATRGYAACRC MEME-9 width = 18 sites = 17 llr = 231 E-value = 7.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGTTKCCATRGYAACRC MEME-9 Description -------------------------------------------------------------------------------- Simplified A 1:21:::18141:87153 pos.-specific C 721::169:1::6:2817 probability G 218::52:1:69:11:3: matrix T 18:9a42128::41:11: bits 2.1 1.9 * 1.7 * * 1.5 ** * * Relative 1.3 ** * * * Entropy 1.1 **** * ***** * * (19.6 bits) 0.9 ***** ********* * 0.6 **************** * 0.4 ****************** 0.2 ****************** 0.0 ------------------ Multilevel CTGTTGCCATGGCAACAC consensus TT A T GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTTKCCATRGYAACRC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------ chr2:10276142-10276242 + 36 1.14e-11 GAAACATAGC CTGTTGCCATGGCAACAC ACGGACTGAA chr16:97075099-97075199 - 14 9.79e-10 TCCTGCAGTC CTGTTGCCTTAGCAACAC TCTAACAATA chr5:77170559-77170659 + 64 1.77e-09 TTATGGACAA CTGTTTGCATAGCAACAC ATGTTCATAG chr13:109487271-10948737 - 4 2.14e-08 GTGTTCCCAA GTGTTGTCATGGTAACAA GAA chr3:54527231-54527331 + 35 4.54e-08 CTTAGGCTAA CTGTTTCCATAGCTCCGC TCTTCTCAGT chr1:153011422-153011522 - 66 5.59e-08 GCTCCATCCA CTGTTGCCATGGTTAAGC CGGAGGATAA chr18:38146861-38146961 + 55 7.53e-08 TGGCAGGCTG TTGTTCCCATGGCAACCC CATCCCAGGC chr9:76169201-76169301 - 81 9.14e-08 AC CTGTTGGCATGGTAGAAC ACAGGTCTCT chr15:68363067-68363167 - 16 2.10e-07 GTGGAGGCTG CCGTTGCCATGGCAGTGA CGTCAGGCGT chr7:37563258-37563358 + 78 7.29e-07 CAGAAATCTG CTGTTCGCTCGGCAACAA TAGGG chr19:17715444-17715544 + 67 7.29e-07 ATGGGACTGT GTAATGTCATAGCAACAC CAGCTCCTGC chr6:126563848-126563948 + 22 9.17e-07 GATGTGTCCC ATATTTTCAAGGCAACAC CAGCCGCTCT chr4:152725830-152725930 + 69 9.88e-07 GTGGCTACAG CGGTTTCCATGACAACTC CAAGGAGAGC chr5:90694356-90694456 - 69 1.06e-06 GAACTCATTT CCCTTTCCATGGTGACGC CAACAATGTT chr10:118956242-11895634 - 60 1.23e-06 CATCAGTTGT CTATTGCTATGGTAATAA CACGTTAACG chr1:9627119-9627219 + 55 4.69e-06 TGCTGCTAAG GCGTTTCCGTAGCACCCA TAAATTCCAG chr13:23270254-23270354 + 19 6.71e-06 cgcgcacaca ctgttgtataagtaccgc gcgctaaccg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTTKCCATRGYAACRC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:10276142-10276242 1.1e-11 35_[+9]_47 chr16:97075099-97075199 9.8e-10 13_[-9]_69 chr5:77170559-77170659 1.8e-09 63_[+9]_19 chr13:109487271-10948737 2.1e-08 3_[-9]_79 chr3:54527231-54527331 4.5e-08 34_[+9]_48 chr1:153011422-153011522 5.6e-08 65_[-9]_17 chr18:38146861-38146961 7.5e-08 54_[+9]_28 chr9:76169201-76169301 9.1e-08 80_[-9]_2 chr15:68363067-68363167 2.1e-07 15_[-9]_67 chr7:37563258-37563358 7.3e-07 77_[+9]_5 chr19:17715444-17715544 7.3e-07 66_[+9]_16 chr6:126563848-126563948 9.2e-07 21_[+9]_61 chr4:152725830-152725930 9.9e-07 68_[+9]_14 chr5:90694356-90694456 1.1e-06 68_[-9]_14 chr10:118956242-11895634 1.2e-06 59_[-9]_23 chr1:9627119-9627219 4.7e-06 54_[+9]_28 chr13:23270254-23270354 6.7e-06 18_[+9]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTTKCCATRGYAACRC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGTTKCCATRGYAACRC width=18 seqs=17 chr2:10276142-10276242 ( 36) CTGTTGCCATGGCAACAC 1 chr16:97075099-97075199 ( 14) CTGTTGCCTTAGCAACAC 1 chr5:77170559-77170659 ( 64) CTGTTTGCATAGCAACAC 1 chr13:109487271-10948737 ( 4) GTGTTGTCATGGTAACAA 1 chr3:54527231-54527331 ( 35) CTGTTTCCATAGCTCCGC 1 chr1:153011422-153011522 ( 66) CTGTTGCCATGGTTAAGC 1 chr18:38146861-38146961 ( 55) TTGTTCCCATGGCAACCC 1 chr9:76169201-76169301 ( 81) CTGTTGGCATGGTAGAAC 1 chr15:68363067-68363167 ( 16) CCGTTGCCATGGCAGTGA 1 chr7:37563258-37563358 ( 78) CTGTTCGCTCGGCAACAA 1 chr19:17715444-17715544 ( 67) GTAATGTCATAGCAACAC 1 chr6:126563848-126563948 ( 22) ATATTTTCAAGGCAACAC 1 chr4:152725830-152725930 ( 69) CGGTTTCCATGACAACTC 1 chr5:90694356-90694456 ( 69) CCCTTTCCATGGTGACGC 1 chr10:118956242-11895634 ( 60) CTATTGCTATGGTAATAA 1 chr1:9627119-9627219 ( 55) GCGTTTCCGTAGCACCCA 1 chr13:23270254-23270354 ( 19) CTGTTGTATAAGTACCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTTKCCATRGYAACRC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 18 n= 49800 bayes= 11.5855 E= 7.8e+005 -220 163 -37 -220 -1073 -37 -196 149 -62 -196 174 -1073 -220 -1073 -1073 179 -1073 -1073 -1073 188 -1073 -96 121 38 -1073 136 -37 -21 -220 195 -1073 -220 149 -1073 -196 -62 -121 -196 -1073 160 38 -1073 150 -1073 -220 -1073 204 -1073 -1073 150 -1073 38 160 -1073 -196 -121 138 -37 -96 -1073 -121 174 -1073 -121 96 -96 36 -220 12 163 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTTKCCATRGYAACRC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 18 nsites= 17 E= 7.8e+005 0.058824 0.705882 0.176471 0.058824 0.000000 0.176471 0.058824 0.764706 0.176471 0.058824 0.764706 0.000000 0.058824 0.000000 0.000000 0.941176 0.000000 0.000000 0.000000 1.000000 0.000000 0.117647 0.529412 0.352941 0.000000 0.588235 0.176471 0.235294 0.058824 0.882353 0.000000 0.058824 0.764706 0.000000 0.058824 0.176471 0.117647 0.058824 0.000000 0.823529 0.352941 0.000000 0.647059 0.000000 0.058824 0.000000 0.941176 0.000000 0.000000 0.647059 0.000000 0.352941 0.823529 0.000000 0.058824 0.117647 0.705882 0.176471 0.117647 0.000000 0.117647 0.764706 0.000000 0.117647 0.529412 0.117647 0.294118 0.058824 0.294118 0.705882 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGTTKCCATRGYAACRC MEME-9 regular expression -------------------------------------------------------------------------------- CTGTT[GT][CT]CAT[GA]G[CT]AAC[AG][CA] -------------------------------------------------------------------------------- Time 2682.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCAGCWC MEME-10 width = 8 sites = 45 llr = 426 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCAGCWC MEME-10 Description -------------------------------------------------------------------------------- Simplified A :::a:25: pos.-specific C :aa::5:a probability G a:::a1:: matrix T :::::25: bits 2.1 *** * * 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ***** * (13.7 bits) 0.9 ***** ** 0.6 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel GCCAGCTC consensus AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCWC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr1:174865289-174865389 + 12 2.08e-05 caaacactga gccagctc tccagctccT chr18:7120793-7120893 - 67 2.08e-05 TGAATAGCAG GCCAGCTC ATTCTTCTGG chr13:34762295-34762395 - 42 2.08e-05 GTGTCTGGCT GCCAGCAC TGAGATTGTT chr10:111327910-11132801 - 77 2.08e-05 CATGAGGAAG GCCAGCAC TGTACTGGCT chr5:97793989-97794089 - 65 2.08e-05 TTGCAACGCG GCCAGCAC TCTGCAAAGT chr18:78229325-78229425 + 49 2.08e-05 CTGCTTCATT GCCAGCAC GCTTATGAAT chr3:104716333-104716433 - 30 2.08e-05 TGCGAATTCA GCCAGCAC GAACCTCCAT chr2:82378467-82378567 + 61 2.08e-05 ctcagtacca gccagctc ctgaattgct chrX:98858127-98858227 - 19 2.08e-05 CTGTCTTTAT GCCAGCAC CACATTGTTC chr13:60403420-60403520 + 76 2.08e-05 TGTGGCTGAT GCCAGCAC CAACCAGATG chr15:99498567-99498667 - 79 2.08e-05 CATGCACCCG GCCAGCTC TAGTCCAGTG chr10:89160728-89160828 - 4 2.08e-05 AAAAATGTGT GCCAGCTC TTC chr4:95290177-95290277 + 82 2.08e-05 CTATGACAGT GCCAGCTC TTCTGGCATC chr15:73131966-73132066 - 87 2.08e-05 AAACTA GCCAGCAC AGGCGGTGAC chr3:83797785-83797885 - 75 2.08e-05 CCTGGAAGGA GCCAGCAC TTCAGAAAAG chr1:160534817-160534917 - 71 2.08e-05 TGAACACAAT GCCAGCAC TGCATTCAGC chr9:48740129-48740229 + 45 2.08e-05 GGGTGGGGCG GCCAGCAC CAGCTAGAGA chr2:57350532-57350632 - 78 2.08e-05 AGTTGATATG GCCAGCTC GGCTGTTAAT chr15:36442461-36442561 - 19 2.08e-05 ACTGATGGGT GCCAGCTC CAGGAGAAAT chr4:140217910-140218010 + 1 2.08e-05 . GCCAGCAC TGGGGACACT chr14:120155741-12015584 + 84 2.08e-05 GCCCCAAGCT GCCAGCTC TAGGTGTTT chr9:26480845-26480945 - 53 2.08e-05 CAGGGAGGCA GCCAGCTC AGAGCTAGAG chr2:92687678-92687778 + 63 4.56e-05 GGTGTACTGG GCCAGAac tatgaggcag chr6:31332122-31332222 - 1 4.56e-05 AGCCCTGCAA GCCAGATC chr1:137377992-137378092 + 65 4.56e-05 TCTTCATAGC GCCAGATC TGGTAAAAGG chr11:57477517-57477617 - 71 4.56e-05 GGTTGGTTTG GCCAGATC CTAAGGAAGA chr17:72408113-72408213 - 89 4.56e-05 GGCA GCCAGAAC ACCCAGGACC chr2:8165420-8165520 - 75 4.56e-05 AAGGAAACCC GCCAGAAC AGCAGCTGGG chr2:173413767-173413867 + 30 4.56e-05 CCCCGGGCAG GCCAGATC CCTGGCCACG chr12:46210445-46210545 + 8 4.56e-05 AGCTAGT GCCAGAAC TATTGGACTG chr17:7286259-7286359 - 16 4.56e-05 GGGTGTGGCA GCCAGATC CTCTGTGGAA chr16:9247090-9247190 + 40 4.56e-05 AATAAGCTCT GCCAGATC AGATGGCCCA chr4:119927310-119927410 + 34 6.64e-05 cagtttctcc gccaggtc aaggcgctga chr16:65896697-65896797 + 61 6.64e-05 ccacccacat gccaggac ttgcagctgt chr1:15649626-15649726 - 42 6.64e-05 CAGTTGAGAT GCCAGGTC GTAACCAGAT chr5:90694356-90694456 + 47 6.64e-05 TTGTCTTCTT GCCAGGAC ACTGAACATT chr1:190675415-190675515 + 6 6.64e-05 GGCAA GCCAGGTC CAGGCACTGT chr2:59438340-59438440 + 75 6.64e-05 CCCGAAAACA GCCAGGAC GGAGAAGGCA chr13:29327993-29328093 - 50 9.12e-05 CAATGTGTCT GCCAGTAC TGTGCTATTT chr7:138547893-138547993 - 5 9.12e-05 GGTTGGAACT GCCAGTAC TGTG chr17:45867215-45867315 - 86 9.12e-05 GTCTGCA GCCAGTTC AGGCTAGCTG chr17:88274763-88274863 - 86 9.12e-05 TGCCCAT GCCAGTTC TTCCAGCCAG chr19:54584421-54584521 - 42 9.12e-05 GAGAGTAGAT GCCAGTTC ATAATTTACT chr13:101502040-10150214 - 82 9.12e-05 TCAGAGCCAT GCCAGTTC TCTGATTGTT chr3:85940745-85940845 - 40 9.12e-05 TTCTATGAAT GCCAGTAC TTGGAGGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCWC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:174865289-174865389 2.1e-05 11_[+10]_81 chr18:7120793-7120893 2.1e-05 66_[-10]_26 chr13:34762295-34762395 2.1e-05 41_[-10]_51 chr10:111327910-11132801 2.1e-05 76_[-10]_16 chr5:97793989-97794089 2.1e-05 64_[-10]_28 chr18:78229325-78229425 2.1e-05 48_[+10]_44 chr3:104716333-104716433 2.1e-05 29_[-10]_63 chr2:82378467-82378567 2.1e-05 60_[+10]_32 chrX:98858127-98858227 2.1e-05 18_[-10]_74 chr13:60403420-60403520 2.1e-05 75_[+10]_17 chr15:99498567-99498667 2.1e-05 78_[-10]_14 chr10:89160728-89160828 2.1e-05 3_[-10]_89 chr4:95290177-95290277 2.1e-05 81_[+10]_11 chr15:73131966-73132066 2.1e-05 86_[-10]_6 chr3:83797785-83797885 2.1e-05 74_[-10]_18 chr1:160534817-160534917 2.1e-05 70_[-10]_22 chr9:48740129-48740229 2.1e-05 44_[+10]_48 chr2:57350532-57350632 2.1e-05 77_[-10]_15 chr15:36442461-36442561 2.1e-05 18_[-10]_74 chr4:140217910-140218010 2.1e-05 [+10]_92 chr14:120155741-12015584 2.1e-05 83_[+10]_9 chr9:26480845-26480945 2.1e-05 52_[-10]_40 chr2:92687678-92687778 4.6e-05 62_[+10]_30 chr6:31332122-31332222 4.6e-05 [-10]_92 chr1:137377992-137378092 4.6e-05 64_[+10]_28 chr11:57477517-57477617 4.6e-05 70_[-10]_22 chr17:72408113-72408213 4.6e-05 88_[-10]_4 chr2:8165420-8165520 4.6e-05 74_[-10]_18 chr2:173413767-173413867 4.6e-05 29_[+10]_63 chr12:46210445-46210545 4.6e-05 7_[+10]_85 chr17:7286259-7286359 4.6e-05 15_[-10]_77 chr16:9247090-9247190 4.6e-05 39_[+10]_53 chr4:119927310-119927410 6.6e-05 33_[+10]_59 chr16:65896697-65896797 6.6e-05 60_[+10]_32 chr1:15649626-15649726 6.6e-05 41_[-10]_51 chr5:90694356-90694456 6.6e-05 46_[+10]_46 chr1:190675415-190675515 6.6e-05 5_[+10]_87 chr2:59438340-59438440 6.6e-05 74_[+10]_18 chr13:29327993-29328093 9.1e-05 49_[-10]_43 chr7:138547893-138547993 9.1e-05 4_[-10]_88 chr17:45867215-45867315 9.1e-05 85_[-10]_7 chr17:88274763-88274863 9.1e-05 85_[-10]_7 chr19:54584421-54584521 9.1e-05 41_[-10]_51 chr13:101502040-10150214 9.1e-05 81_[-10]_11 chr3:85940745-85940845 9.1e-05 39_[-10]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCWC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCAGCWC width=8 seqs=45 chr1:174865289-174865389 ( 12) GCCAGCTC 1 chr18:7120793-7120893 ( 67) GCCAGCTC 1 chr13:34762295-34762395 ( 42) GCCAGCAC 1 chr10:111327910-11132801 ( 77) GCCAGCAC 1 chr5:97793989-97794089 ( 65) GCCAGCAC 1 chr18:78229325-78229425 ( 49) GCCAGCAC 1 chr3:104716333-104716433 ( 30) GCCAGCAC 1 chr2:82378467-82378567 ( 61) GCCAGCTC 1 chrX:98858127-98858227 ( 19) GCCAGCAC 1 chr13:60403420-60403520 ( 76) GCCAGCAC 1 chr15:99498567-99498667 ( 79) GCCAGCTC 1 chr10:89160728-89160828 ( 4) GCCAGCTC 1 chr4:95290177-95290277 ( 82) GCCAGCTC 1 chr15:73131966-73132066 ( 87) GCCAGCAC 1 chr3:83797785-83797885 ( 75) GCCAGCAC 1 chr1:160534817-160534917 ( 71) GCCAGCAC 1 chr9:48740129-48740229 ( 45) GCCAGCAC 1 chr2:57350532-57350632 ( 78) GCCAGCTC 1 chr15:36442461-36442561 ( 19) GCCAGCTC 1 chr4:140217910-140218010 ( 1) GCCAGCAC 1 chr14:120155741-12015584 ( 84) GCCAGCTC 1 chr9:26480845-26480945 ( 53) GCCAGCTC 1 chr2:92687678-92687778 ( 63) GCCAGAAC 1 chr6:31332122-31332222 ( 1) GCCAGATC 1 chr1:137377992-137378092 ( 65) GCCAGATC 1 chr11:57477517-57477617 ( 71) GCCAGATC 1 chr17:72408113-72408213 ( 89) GCCAGAAC 1 chr2:8165420-8165520 ( 75) GCCAGAAC 1 chr2:173413767-173413867 ( 30) GCCAGATC 1 chr12:46210445-46210545 ( 8) GCCAGAAC 1 chr17:7286259-7286359 ( 16) GCCAGATC 1 chr16:9247090-9247190 ( 40) GCCAGATC 1 chr4:119927310-119927410 ( 34) GCCAGGTC 1 chr16:65896697-65896797 ( 61) GCCAGGAC 1 chr1:15649626-15649726 ( 42) GCCAGGTC 1 chr5:90694356-90694456 ( 47) GCCAGGAC 1 chr1:190675415-190675515 ( 6) GCCAGGTC 1 chr2:59438340-59438440 ( 75) GCCAGGAC 1 chr13:29327993-29328093 ( 50) GCCAGTAC 1 chr7:138547893-138547993 ( 5) GCCAGTAC 1 chr17:45867215-45867315 ( 86) GCCAGTTC 1 chr17:88274763-88274863 ( 86) GCCAGTTC 1 chr19:54584421-54584521 ( 42) GCCAGTTC 1 chr13:101502040-10150214 ( 82) GCCAGTTC 1 chr3:85940745-85940845 ( 40) GCCAGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCWC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 12.1589 E= 2.4e+003 -1214 -1214 213 -1214 -1214 213 -1214 -1214 -1214 213 -1214 -1214 188 -1214 -1214 -1214 -1214 -1214 213 -1214 -29 110 -78 -80 85 -1214 -1214 91 -1214 213 -1214 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCWC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 2.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.488889 0.133333 0.155556 0.488889 0.000000 0.000000 0.511111 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCWC MEME-10 regular expression -------------------------------------------------------------------------------- GCCAG[CA][TA]C -------------------------------------------------------------------------------- Time 2957.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:105486905-105487005 1.80e-06 38_[-1(1.04e-05)]_3_[-1(1.04e-05)]_\ [+8(3.02e-08)]_22 chr17:70471982-70472082 1.92e-03 40_[-2(6.13e-06)]_30 chr6:140200247-140200347 2.04e-02 18_[+5(2.07e-05)]_48_[-8(7.03e-06)]_\ 3 chr14:112205373-11220547 2.72e-03 8_[+10(6.64e-05)]_40_[-4(4.19e-05)]_\ 36 chr2:71643967-71644067 3.89e-04 21_[-2(2.32e-10)]_2_[-2(2.15e-08)]_\ 17 chr1:9627119-9627219 2.19e-06 25_[+4(1.91e-05)]_8_[+1(7.68e-05)]_\ 5_[+9(4.69e-06)]_28 chr12:10874235-10874335 9.83e-01 100 chrX:89507987-89508087 2.68e-01 100 chr5:67467079-67467179 4.09e-02 64_[-6(6.47e-05)]_12 chr15:60573114-60573214 1.49e-01 29_[+5(3.21e-05)]_11_[+5(7.89e-06)]_\ 40 chr15:30383089-30383189 1.67e-03 40_[-8(4.65e-07)]_39 chr2:92956058-92956158 1.99e-04 48_[+2(8.04e-09)]_22 chr10:122779329-12277942 7.81e-04 55_[+4(1.91e-05)]_37 chr1:165046229-165046329 1.24e-05 55_[+2(6.95e-09)]_15 chr9:46702481-46702581 2.39e-01 100 chr11:46096447-46096547 9.41e-01 100 chr2:124472883-124472983 8.56e-02 100 chr12:76471891-76471991 1.07e-03 19_[-2(1.02e-07)]_51 chr6:77381256-77381356 6.17e-01 100 chr11:16832112-16832212 5.08e-07 28_[+1(7.68e-05)]_24_[-6(1.46e-06)]_\ 16 chr3:34748647-34748747 1.67e-01 100 chr12:58164333-58164433 9.68e-01 100 chr1:23169009-23169109 5.01e-03 13_[-1(4.36e-05)]_79 chr2:93071823-93071923 1.19e-06 43_[-2(3.83e-09)]_27 chr8:128654470-128654570 1.46e-02 37_[-1(7.68e-05)]_55 chr14:121192378-12119247 9.01e-01 100 chr8:34393411-34393511 5.88e-01 100 chr2:143342234-143342334 9.70e-01 100 chr16:9247090-9247190 4.34e-03 39_[+10(4.56e-05)]_20_\ [-1(7.68e-05)]_12_[-7(6.65e-05)]_2 chr8:54507710-54507810 2.23e-02 29_[+3(4.35e-07)]_51 chr4:62767543-62767643 6.30e-02 100 chr12:99776445-99776545 4.28e-08 18_[+2(3.94e-10)]_22_[+1(8.72e-05)]_\ 22 chr9:69093862-69093962 2.65e-06 9_[+4(1.91e-05)]_10_[+1(1.04e-05)]_\ 65 chr1:38438724-38438824 5.26e-01 100 chr10:76653897-76653997 2.35e-06 25_[-1(4.36e-05)]_25_[-6(6.37e-11)]_\ 18 chr8:14519256-14519356 5.73e-02 100 chr10:90964442-90964542 6.70e-02 100 chr5:69665490-69665590 9.93e-03 37_[-5(6.79e-05)]_53 chr14:17622919-17623019 9.57e-01 100 chr3:85940745-85940845 5.29e-02 39_[-10(9.12e-05)]_53 chr16:85092526-85092626 6.60e-01 100 chr18:67968541-67968641 9.76e-04 8_[-5(2.67e-05)]_82 chr14:63759701-63759801 2.16e-04 78_[-3(1.14e-07)]_2 chr17:7286259-7286359 1.36e-03 15_[-10(4.56e-05)]_77 chr3:127188714-127188814 7.34e-01 100 chr4:82331805-82331905 2.33e-01 32_[+6(5.99e-05)]_44 chr5:136804977-136805077 4.12e-05 14_[+1(4.36e-05)]_18_[+1(1.04e-05)]_\ 52 chr6:93770135-93770235 1.72e-01 100 chr14:70498006-70498106 6.57e-01 100 chr9:122078484-122078584 9.98e-01 100 chr4:22302118-22302218 8.37e-01 100 chr11:43385194-43385294 2.82e-02 100 chr7:138144047-138144147 4.10e-02 100 chr4:68758439-68758539 2.32e-01 100 chr15:80595768-80595868 7.86e-01 100 chr2:71667631-71667731 2.14e-03 24_[-1(2.08e-05)]_68 chr18:25726715-25726815 2.07e-07 45_[+1(1.04e-05)]_10_[-3(1.95e-09)]_\ 17 chr13:84059849-84059949 3.97e-03 28_[-5(6.38e-05)]_62 chr9:28254951-28255051 2.15e-02 86_[-1(7.68e-05)]_6 chr13:52828789-52828889 6.92e-01 100 chr2:8313331-8313431 2.89e-01 100 chr3:96960180-96960280 5.99e-02 100 chr2:82154869-82154969 9.35e-01 100 chr18:79049952-79050052 2.81e-01 100 chr12:46210445-46210545 2.51e-01 7_[+10(4.56e-05)]_85 chr10:21095392-21095492 1.81e-01 21_[+2(3.89e-06)]_49 chr13:101502040-10150214 4.42e-01 81_[-10(9.12e-05)]_11 chr4:87298122-87298222 5.42e-01 100 chr5:106088675-106088775 1.34e-02 75_[-1(1.04e-05)]_3_[-5(9.36e-05)]_\ 4 chr3:155289827-155289927 9.90e-01 100 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chr2:172116335-172116435 1.56e-01 100 chr10:111327910-11132801 2.23e-02 67_[+10(9.12e-05)]_1_\ [-10(2.08e-05)]_16 chr2:179582871-179582971 1.38e-01 60_[+2(8.00e-05)]_10 chr7:57331239-57331339 5.61e-01 100 chr7:135303952-135304052 2.68e-01 88_[-5(3.21e-05)]_2 chr8:84363667-84363767 1.36e-05 33_[+3(8.64e-08)]_47 chr8:30694812-30694912 1.00e+00 100 chr13:109190328-10919042 1.66e-01 29_[-1(5.40e-05)]_26_[-1(2.08e-05)]_\ 29 chr3:27478473-27478573 1.79e-01 100 chr13:34762295-34762395 3.38e-03 41_[-10(2.08e-05)]_8_[+6(1.68e-05)]_\ 19 chr16:52134529-52134629 1.27e-01 100 chr1:126948697-126948797 5.34e-01 100 chr13:26154897-26154997 2.20e-03 37_[+5(3.67e-05)]_18_[-1(7.68e-05)]_\ 27 chr6:30221855-30221955 9.83e-01 100 chr5:66935945-66936045 5.24e-01 100 chr2:92687678-92687778 3.33e-03 16_[-6(1.46e-05)]_22_\ [+10(4.56e-05)]_30 chr19:53440507-53440607 5.20e-01 81_[-1(7.68e-05)]_11 chr15:63652388-63652488 8.98e-01 100 chr13:109487271-10948737 2.85e-09 3_[-9(2.14e-08)]_23_[+2(3.41e-05)]_\ 18_[-1(2.08e-05)] chr6:78321262-78321362 9.12e-01 100 chr17:64077347-64077447 1.26e-03 61_[-4(1.91e-05)]_31 chr6:111622433-111622533 2.41e-01 100 chr13:8316271-8316371 5.76e-01 100 chr5:82346618-82346718 1.83e-02 28_[-3(1.04e-07)]_52 chr1:39266933-39267033 8.77e-01 100 chr13:117833241-11783334 9.92e-01 100 chr9:37034101-37034201 6.67e-01 100 chr10:43124519-43124619 5.05e-05 42_[+1(4.36e-05)]_18_[-5(7.89e-06)]_\ 22 chr5:18137836-18137936 2.37e-02 100 chr18:7120793-7120893 9.84e-03 66_[-10(2.08e-05)]_26 chr4:107652916-107653016 3.22e-07 14_[-3(3.22e-08)]_29_[-5(1.41e-06)]_\ 27 chr17:87142348-87142448 1.46e-06 41_[-2(2.47e-08)]_29 chr12:70718645-70718745 7.50e-01 100 chr4:119927310-119927410 2.66e-02 33_[+10(6.64e-05)]_59 chr1:177027388-177027488 9.79e-02 100 chr18:9494901-9495001 7.12e-03 15_[+5(1.41e-06)]_75 chr5:112848845-112848945 9.35e-09 19_[+3(1.49e-07)]_6_[-4(1.91e-05)]_\ [+8(4.18e-06)]_26 chr1:152282625-152282725 3.59e-01 100 chr1:174865289-174865389 3.07e-02 11_[+10(2.08e-05)]_41_\ [+8(8.62e-05)]_19 chr13:60007696-60007796 4.68e-02 60_[+2(6.99e-05)]_10 chr16:40504180-40504280 1.88e-02 32_[+1(2.08e-05)]_60 chr15:96012307-96012407 1.88e-04 24_[-2(6.43e-07)]_15_[+6(6.11e-05)]_\ 7 chr1:151955414-151955514 9.20e-03 60_[+1(8.72e-05)]_32 chr19:10424099-10424199 4.65e-04 67_[-6(2.94e-10)]_9 chr11:52909814-52909914 6.61e-04 45_[-6(3.66e-06)]_31 chr4:88238298-88238398 3.48e-02 23_[-1(1.04e-05)]_69 chr16:83606817-83606917 9.00e-01 100 chr7:98895622-98895722 1.74e-01 100 chr5:74857129-74857229 1.97e-02 49_[+6(8.21e-05)]_27 chr18:49084852-49084952 6.30e-02 18_[+1(4.36e-05)]_74 chr12:109399513-10939961 7.71e-02 24_[+2(3.89e-06)]_46 chr5:54895168-54895268 4.01e-01 70_[+4(1.91e-05)]_22 chr18:45698044-45698144 7.90e-01 100 chr18:77226446-77226546 1.10e-03 1_[+3(4.02e-07)]_79 chr5:139083708-139083808 3.12e-04 23_[+6(2.50e-05)]_44_[+1(1.04e-05)]_\ 1 chr4:106838821-106838921 8.81e-10 26_[+3(2.89e-08)]_32_[+8(7.48e-06)]_\ 1 chr12:26136862-26136962 6.50e-01 100 chr1:35957364-35957464 7.85e-03 30_[+6(1.27e-05)]_46 chr18:54545077-54545177 7.05e-01 100 chr15:87543923-87544023 3.11e-06 10_[+7(1.03e-07)]_33_[+2(3.55e-06)]_\ 16 chr4:68906895-68906995 1.44e-05 11_[+1(7.68e-05)]_4_[-2(6.52e-05)]_\ 10_[+2(2.82e-09)]_7 chr7:138668375-138668475 3.83e-03 21_[-5(1.73e-05)]_69 chr5:16000857-16000957 3.31e-02 100 chr9:42217692-42217792 3.11e-04 44_[+8(7.71e-05)]_4_[+1(1.04e-05)]_\ 23 chr12:11350446-11350546 9.19e-02 57_[+1(4.36e-05)]_35 chrX:105211548-105211648 8.41e-01 100 chr12:33235938-33236038 9.35e-03 100 chr19:55057573-55057673 9.28e-03 80_[-1(1.04e-05)]_12 chr8:100499491-100499591 5.38e-01 100 chr4:153913302-153913402 8.07e-01 100 chr1:54002067-54002167 2.21e-01 100 chr17:48776379-48776479 5.13e-02 53_[-1(8.72e-05)]_39 chr9:76169201-76169301 2.84e-03 32_[-6(2.08e-05)]_24_[-9(9.14e-08)]_\ 2 chr13:28416060-28416160 1.43e-01 76_[-1(8.72e-05)]_16 chr13:54116269-54116369 9.14e-03 53_[-5(7.89e-06)]_37 chr18:75222839-75222939 1.79e-06 2_[+1(4.36e-05)]_46_[+4(7.14e-05)]_\ 28_[+1(4.36e-05)] chr18:25535648-25535748 4.57e-02 62_[-8(6.88e-05)]_17 chr4:83097962-83098062 3.31e-01 100 chr15:72083590-72083690 4.96e-05 23_[+3(2.29e-07)]_57 chr1:126973825-126973925 1.52e-01 30_[-2(9.77e-05)]_2_[+1(9.96e-05)]_\ 30 chr19:48463424-48463524 1.50e-03 15_[+6(5.42e-06)]_61 chr15:51082380-51082480 8.93e-01 100 chr13:29327993-29328093 4.58e-01 49_[-10(9.12e-05)]_43 chr13:59004162-59004262 7.69e-01 100 chr11:8424153-8424253 1.30e-04 22_[+1(4.36e-05)]_13_[+3(6.70e-10)]_\ 37 chr15:54362683-54362783 9.15e-01 100 chr1:25644202-25644302 8.00e-02 26_[+8(1.86e-05)]_53 chr13:59065544-59065644 1.31e-02 92_[+1(8.72e-05)] chr6:16553712-16553812 1.65e-01 15_[-8(8.94e-05)]_64 chr2:116913866-116913966 8.44e-01 100 chr12:54052987-54053087 1.28e-01 61_[-6(2.63e-05)]_15 chr1:42233399-42233499 4.51e-01 100 chr11:110754389-11075448 4.66e-01 100 chr5:77170559-77170659 2.32e-04 63_[+9(1.77e-09)]_19 chr5:64043979-64044079 3.53e-01 100 chr18:82095623-82095723 2.69e-02 30_[+5(2.67e-05)]_60 chr17:62608072-62608172 2.87e-01 100 chr6:121052157-121052257 6.90e-09 25_[-2(5.44e-08)]_19_[+5(3.98e-05)]_\ 16 chr15:63958872-63958972 2.39e-02 100 chr6:134372918-134373018 1.28e-03 26_[-6(6.48e-08)]_50 chr16:52609812-52609912 4.21e-01 85_[-1(4.36e-05)]_7 chr12:7074079-7074179 9.32e-01 100 chr11:56351154-56351254 9.91e-03 56_[-4(1.91e-05)]_1_[-3(2.10e-05)]_\ 15 chr11:109874966-10987506 4.41e-02 78_[+1(5.40e-05)]_14 chr3:71653926-71654026 8.95e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-39.local ********************************************************************************