******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:110540361-110540461 1.0000 100 chr17:58407742-58407842 1.0000 100 chr6:112530752-112530852 1.0000 100 chr14:96028896-96028996 1.0000 100 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100 chr1:23286682-23286782 1.0000 100 chr13:105733025-10573312 1.0000 100 chr9:29874728-29874828 1.0000 100 chr10:42308572-42308672 1.0000 100 chr4:142574559-142574659 1.0000 100 chr17:80982329-80982429 1.0000 100 chr4:90564357-90564457 1.0000 100 chr17:70629838-70629938 1.0000 100 chr12:54833897-54833997 1.0000 100 chr4:93762642-93762742 1.0000 100 chr1:168363180-168363280 1.0000 100 chr17:81545989-81546089 1.0000 100 chr5:74364911-74365011 1.0000 100 chr1:144498090-144498190 1.0000 100 chr1:167938207-167938307 1.0000 100 chr13:48226892-48226992 1.0000 100 chr16:21854465-21854565 1.0000 100 chr15:78674981-78675081 1.0000 100 chr1:143501847-143501947 1.0000 100 chr18:80682543-80682643 1.0000 100 chr11:33789516-33789616 1.0000 100 chr4:66336409-66336509 1.0000 100 chr16:65029536-65029636 1.0000 100 chr7:78498362-78498462 1.0000 100 chr5:50202984-50203084 1.0000 100 chr18:37877057-37877157 1.0000 100 chr12:92775642-92775742 1.0000 100 chr5:37551593-37551693 1.0000 100 chr18:33857879-33857979 1.0000 100 chr18:66653739-66653839 1.0000 100 chr5:118115716-118115816 1.0000 100 chr4:89776262-89776362 1.0000 100 chr12:10940730-10940830 1.0000 100 chr1:163266401-163266501 1.0000 100 chr18:40371953-40372053 1.0000 100 chr15:67942884-67942984 1.0000 100 chr4:48409000-48409100 1.0000 100 chr1:24302649-24302749 1.0000 100 chr4:138555454-138555554 1.0000 100 chr9:34538333-34538433 1.0000 100 chr11:118738766-11873886 1.0000 100 chrX:133624127-133624227 1.0000 100 chr12:27064970-27065070 1.0000 100 chr19:42392028-42392128 1.0000 100 chr8:86309385-86309485 1.0000 100 chr4:130984364-130984464 1.0000 100 chr1:39232163-39232263 1.0000 100 chr17:9829709-9829809 1.0000 100 chr9:77469757-77469857 1.0000 100 chr13:10024067-10024167 1.0000 100 chr13:43514821-43514921 1.0000 100 chr18:63762226-63762326 1.0000 100 chr18:6191002-6191102 1.0000 100 chr4:63994378-63994478 1.0000 100 chr15:51752730-51752830 1.0000 100 chr1:121630385-121630485 1.0000 100 chr19:30205372-30205472 1.0000 100 chr15:27790665-27790765 1.0000 100 chr13:11338159-11338259 1.0000 100 chr13:46180414-46180514 1.0000 100 chr10:116757342-11675744 1.0000 100 chr15:29432921-29433021 1.0000 100 chr1:144916514-144916614 1.0000 100 chr13:46571051-46571151 1.0000 100 chr5:139951300-139951400 1.0000 100 chr2:107614695-107614795 1.0000 100 chr12:49887202-49887302 1.0000 100 chr6:6059861-6059961 1.0000 100 chr11:82484225-82484325 1.0000 100 chr5:52036580-52036680 1.0000 100 chr5:42174595-42174695 1.0000 100 chr18:69898868-69898968 1.0000 100 chr17:30469627-30469727 1.0000 100 chr6:99339061-99339161 1.0000 100 chr15:36937893-36937993 1.0000 100 chr6:103320553-103320653 1.0000 100 chr16:33158562-33158662 1.0000 100 chr11:112458016-11245811 1.0000 100 chr11:35517509-35517609 1.0000 100 chr11:81695074-81695174 1.0000 100 chr3:63398610-63398710 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.265 C 0.235 G 0.235 T 0.265 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.277 C 0.223 G 0.223 T 0.277 ******************************************************************************** ******************************************************************************** MOTIF VGWGAGAGVGRRVGRGRGARRVAGSGRGV MEME-1 width = 29 sites = 68 llr = 868 E-value = 3.7e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif VGWGAGAGVGRRVGRGRGARRVAGSGRGV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 41537:61414331515264535122413 pos.-specific C 2311:31:2:123112111:121121:13 probability G 37163729365548363736342745585 matrix T 1:3:1:1::3::1:111:::112:12::: bits 2.2 1.9 1.7 1.5 * Relative 1.3 * * * Entropy 1.1 * * * * * * (18.4 bits) 0.9 * * * * * * * * * 0.6 * *** * *** * *** * ** 0.4 * ********* * ***** * *** 0.2 ***************************** 0.0 ----------------------------- Multilevel AGAGAGAGAGGGGGAGAGAGAGAGGGGGG consensus GCTAGCG GTAAC G GAGAGAG CAA A sequence C CA C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGWGAGAGVGRRVGRGRGARRVAGSGRGV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr3:19424147-19424247 + 51 8.72e-14 ggagagagag agagagagagagagagagagagagagagg agaggttgac chr9:120363489-120363589 - 54 4.31e-13 AGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGA CTTTCTTTAG chr11:33695032-33695132 - 8 4.31e-13 AGAGACAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGA GCATGTG chr15:54245202-54245302 + 30 1.15e-12 GAAAAAGAGT Cgagagagagagagagagagagagagaga gagagagaga chr11:26437174-26437274 - 70 1.84e-12 AG GGAGGGAGGGAGGGAGGGAGGAAGGAAGG AAGGAAGGAA chr8:126660539-126660639 + 61 1.58e-11 agagagagag cgagagagagagcgagagcgagagcgaga gagagagaga chr13:14498729-14498829 + 22 1.06e-10 GCATCTAAAT TGAGAGAGCGGAGGACGGGGAGTGGGAGG CGGAATCCTG chr9:34538333-34538433 + 19 5.82e-10 agaaagaggg actgaggggggaagacagagagagagaga gTGTGTGGCA chr15:30451199-30451299 - 1 5.82e-10 ACACACACAC ACACACAGAGAGAGAGAGAGAGAGAGAGA chr9:77469757-77469857 + 26 6.83e-10 gcacgggtag ggaggcagaggcggggtgggggaggaggc tccgatgctc chr2:139378769-139378869 - 69 6.83e-10 AAA AGAGACAGAGAGGGATGGAGACTGGAGGA AAAATAAGGA chr18:56676469-56676569 - 62 6.83e-10 GTAGAGACAG AGAAAGAGAGGAGGACAGAGAAGGATAGG GAGAGAAAGA chr17:66221150-66221250 - 16 4.17e-09 AAGAGATGTG AGTGAGAGAAGGGGAAGGAAAACGGGAGG GGCAGTAGGA chr4:119933050-119933150 - 45 4.81e-09 AATGAGTGAG CGAGTGAGCGAGCGAGAAAGTGAGTGAGG AGTTAAATAG chr5:69233569-69233669 - 51 8.36e-09 GGAGCATGCC AGAAGCAGCTGAAGAGAGAAGGAAGGAGG GATGTTTTAT chr13:93057420-93057520 - 51 8.36e-09 TGAAAACAGA GGAGAGGGGGAGAGATTGAGAGAGAGGAG GAAAGAGATT chrX:103066416-103066516 - 3 9.58e-09 AGTCCCACAA GGAGAGAGAGGCCGAAAGGGGAGCCTGGG CG chr11:82631194-82631294 - 5 9.58e-09 TTTGCTTATT GAAAAGAGAGGAAGAAAAAGAAAGGGAGG GGAA chr5:118458993-118459093 + 22 2.39e-08 CAGCCTCGGA ACTGAGAGAGAACGGGAGAGACCACAGGG CAGGGAGGGG chr13:107888959-10788905 + 42 7.16e-08 GCCCGTCCGG GGAGACGGGGGCGGGGACCAGCGGGAGGA AATGGGCGCT chr18:25548292-25548392 - 18 1.01e-07 CAAACCTAGT AGAATGAGGGAACGTGGGGGGGAGGGGCC GCTCGAGACA chr6:37216341-37216441 - 37 1.13e-07 GGGGTTTGGG ACTGAGGGAGGGAGGTGGAATGAGTCAGC TGGGTAAAAG chr18:54901701-54901801 + 39 1.59e-07 TCCCTTCAGG AAAGAGGGGTGGGGCATGGAGGAGGGGGG CAGATTGGGC chr5:131814657-131814757 + 25 2.20e-07 CCTAGGCTGA GGGAACAGAGAGTGGGGAAGACAGTAGGC CAGGCCTCGG chr10:82811834-82811934 + 64 2.45e-07 GGAGGGGGAC CGGAGGCGCGGAGGGCAGGAGCGGCGAGG GTGTGTCA chr3:146381376-146381476 - 32 2.73e-07 ACATTGTGGG ACAGGCAGATAGAGTGGAGAGGGGGTGGG CGAGACACAC chr5:118115716-118115816 + 63 3.74e-07 CTGGGAATAC AGTAGGAGGGGCAGGGTGTGAAAGGCAGG CTCTGGGGG chr6:10690463-10690563 + 62 4.59e-07 tcagcaatgc gcagagagatgcgcagagaggcaatgcgc agagaggtgc chr4:149796550-149796650 + 27 5.08e-07 aagatgttcc ggagactgctacggtgggagaaacctgga agatatctgc chr12:71371979-71372079 + 1 5.62e-07 . GCGGGGCGGGGGGGGGAGAGCAGGGAACA GAAAACAGAT chr9:46723656-46723756 - 3 6.21e-07 GAGGCAGAAA GATGGGGGAGGGCGGGGCAGGGGGAATGG AA chr4:138555454-138555554 - 24 6.85e-07 CAGCCGCCTA CGTGGGTGGAGGGGGTGGAGCAGGGAAGC GCAGCCGCCT chr17:70629838-70629938 + 72 6.85e-07 GACCATGTCT AATAAGTGGGAGGGAGGAGGTGGGGTGGC chr1:52578404-52578504 + 56 7.56e-07 GTGTAGCAAG GCTCAGAGGGGGGAAGGGAAGTTGCTGGC AGGCAAGTCT chr4:5690358-5690458 + 3 7.56e-07 AC TGTGAGGGAAAGCCACAGGAAGAGCCAGC TCAAGTGCTA chr4:46832806-46832906 - 28 7.56e-07 TTGGTGGAAG GGAAGCAGGGGGCGGGAGCAGAAGTTAAA TTTTTGGCGA chr12:10940730-10940830 + 34 9.18e-07 GGCAGACACA GGGAAGGGAGGAAGTGAAAGAAAGCCAAA AAAAAACAAA chr4:128908501-128908601 - 41 1.01e-06 GAGTTTCAGA GCTGGGAGGGAGCGTGAAGATTAGCCGGG TGATACTGCC chr10:59539358-59539458 - 38 1.01e-06 TCAGAGCAGC GGTGGCGGCGGCGGCGGGGAAAGCCTGGC CGTAGGTGTG chr18:80682543-80682643 - 21 1.11e-06 GGACTGGGCT GGAAACAAGGGACGTGGCAGTCTGGAGGG AGGAGTTCTC chr6:127330128-127330228 - 8 1.22e-06 CCGCGCCGCT CCAATGGGCGGCCGCCGGAGGCCGCGGGG AGCGAGG chr11:35517509-35517609 - 37 1.47e-06 TTTAGGGTTC TGAAAGGGAAAACGGGACAAATGGGAGGA ATGGAGAGAT chr16:7106357-7106457 - 44 1.61e-06 AGAGGAGAGA TGAAAGTGCTTGAGGGAGAGTCTGCGGGA CACCATCTGT chr1:160329705-160329805 + 8 1.77e-06 AGAGAGC GGCCAGAGCTGGTGAGGAAGAAACCAAGC CTTGAATTCC chr7:40797265-40797365 + 24 1.94e-06 TGGTGGAGCC TGTGAGAGAGCAAGAGGAGAAAAGTTGAG ATGGGAGCTT chr10:119065365-11906546 - 54 2.12e-06 CTCCGCCTCC CCCGAGGACGGGAGGGAGAGCATACGAGG TGGCATGCTC chr14:30312208-30312308 + 71 2.32e-06 GCTGAATTAC AGAAAGCAATAGCCACAggaggggagggg t chr1:39921981-39922081 - 67 2.32e-06 CAGTT GCTGAGGGGTTGGAGCAGAGAGGAGGAGA GCCACTGTGC chr6:31216593-31216693 - 22 2.32e-06 TTGGGTGGTC CGAGGCGGGTGACGTCCGAGGCGGGGTGG GGACAAGACT chr16:31591976-31592076 + 47 3.01e-06 TTCTAAGCCC TGTGACAGCACAGCATAGGAGCAGGGGGC CCGTGGCTTT chr13:59074028-59074128 + 1 3.01e-06 . CCTGTGCGGAGGGCAAAGAGAAACCGGGG CCAGCTAAGC chr3:132017757-132017857 - 59 3.29e-06 GTGTGTTTGC AGACAGAGCTCAGACGAGGAGAAGAGAGC TAAGTATCAC chr1:58622252-58622352 - 70 3.90e-06 TT GGAGGGAGATGCTGACACAGATGGAGGCG AAGCCTGAGT chr10:88407030-88407130 + 26 4.24e-06 TGGTTGCAGT GGGGAGAGAAACCCTGGAAGTGTAGGAGA GAAAATAAGT chr13:72056434-72056534 + 72 4.24e-06 atatttatac acacaGAGGTACAGAGAGAAACAAAACGC chr4:120718081-120718181 + 9 6.40e-06 AGAAGCAC CACAAGGGGTAAAGGAAGAGAAAAGTGGG AACAGGCAGT chr11:114638588-11463868 + 13 6.40e-06 tattttctgg cggcgctgggaGGGGCACAAGCTGGTGGG GACTCCAGGT chr13:107246937-10724703 + 7 6.94e-06 ACACAA TGTAGCCGCAGAGGATGGGGGGTGGGGCG GGTGGTGCTG chr1:55960219-55960319 - 18 7.52e-06 CGTTTAGAAC GCAAGTAGAGGACCGGGAAAAGAAGCGGC ATGTCTGAGG chr9:34797693-34797793 - 31 7.52e-06 GGATTGGACC AGAAACTGAAGAGGGAAAAATAAACGGGA GCCTGGAGCC chrX:93068832-93068932 - 22 9.51e-06 GGCTGAGTTA AGCGAGCTGTGAGGAGCGGAGGTGGTAGA TGGTGCTGTA chr16:91761135-91761235 + 64 1.11e-05 tcctgacact gcagaCAAAGGCTGGATAAAAGTGGAAGG AGACAGTG chr12:75362573-75362673 + 16 1.39e-05 CAGGAAAGCT TCAGAGAGCGAACACGGAAGACACGAAAC AGCTTAATAA chr18:60747534-60747634 + 12 2.15e-05 AAGCTCGCCT AGGGGCAGGACGGAGGACCAACAGTGGGA GGTAGGATCT chr9:46814663-46814763 + 6 6.65e-05 AGTTT AGTCAGAGCTGCGCGTGAAACCCCGCGGG TTGCGCTGGA chr6:67014412-67014512 - 25 7.99e-05 AGAAAAACCC AGTAATATAGACCGAGTGAGTGACTGGAG ACACAGATGT chr1:180778033-180778133 - 53 2.96e-04 CGTGCGCGCT CCCGAGGAATGGCAATCGGGCGTCGCGGC TCCAACGCCT chr4:49285840-49285940 - 19 4.13e-04 TGTGTGTGTG CGTGTGCGCGCGCGCGCGCGTGTGTGTAA GCACTGGAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGWGAGAGVGRRVGRGRGARRVAGSGRGV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:19424147-19424247 8.7e-14 50_[+1]_21 chr9:120363489-120363589 4.3e-13 53_[-1]_18 chr11:33695032-33695132 4.3e-13 7_[-1]_64 chr15:54245202-54245302 1.2e-12 29_[+1]_42 chr11:26437174-26437274 1.8e-12 69_[-1]_2 chr8:126660539-126660639 1.6e-11 60_[+1]_11 chr13:14498729-14498829 1.1e-10 21_[+1]_50 chr9:34538333-34538433 5.8e-10 18_[+1]_53 chr15:30451199-30451299 5.8e-10 [-1]_71 chr9:77469757-77469857 6.8e-10 25_[+1]_46 chr2:139378769-139378869 6.8e-10 68_[-1]_3 chr18:56676469-56676569 6.8e-10 61_[-1]_10 chr17:66221150-66221250 4.2e-09 15_[-1]_56 chr4:119933050-119933150 4.8e-09 44_[-1]_27 chr5:69233569-69233669 8.4e-09 50_[-1]_21 chr13:93057420-93057520 8.4e-09 50_[-1]_21 chrX:103066416-103066516 9.6e-09 2_[-1]_69 chr11:82631194-82631294 9.6e-09 4_[-1]_67 chr5:118458993-118459093 2.4e-08 21_[+1]_50 chr13:107888959-10788905 7.2e-08 41_[+1]_30 chr18:25548292-25548392 1e-07 17_[-1]_54 chr6:37216341-37216441 1.1e-07 36_[-1]_35 chr18:54901701-54901801 1.6e-07 38_[+1]_33 chr5:131814657-131814757 2.2e-07 24_[+1]_47 chr10:82811834-82811934 2.5e-07 63_[+1]_8 chr3:146381376-146381476 2.7e-07 31_[-1]_40 chr5:118115716-118115816 3.7e-07 62_[+1]_9 chr6:10690463-10690563 4.6e-07 61_[+1]_10 chr4:149796550-149796650 5.1e-07 26_[+1]_45 chr12:71371979-71372079 5.6e-07 [+1]_71 chr9:46723656-46723756 6.2e-07 2_[-1]_69 chr4:138555454-138555554 6.9e-07 23_[-1]_48 chr17:70629838-70629938 6.9e-07 71_[+1] chr1:52578404-52578504 7.6e-07 55_[+1]_16 chr4:5690358-5690458 7.6e-07 2_[+1]_69 chr4:46832806-46832906 7.6e-07 27_[-1]_44 chr12:10940730-10940830 9.2e-07 33_[+1]_38 chr4:128908501-128908601 1e-06 40_[-1]_31 chr10:59539358-59539458 1e-06 37_[-1]_34 chr18:80682543-80682643 1.1e-06 20_[-1]_51 chr6:127330128-127330228 1.2e-06 7_[-1]_64 chr11:35517509-35517609 1.5e-06 36_[-1]_35 chr16:7106357-7106457 1.6e-06 43_[-1]_28 chr1:160329705-160329805 1.8e-06 7_[+1]_64 chr7:40797265-40797365 1.9e-06 23_[+1]_48 chr10:119065365-11906546 2.1e-06 53_[-1]_18 chr14:30312208-30312308 2.3e-06 70_[+1]_1 chr1:39921981-39922081 2.3e-06 66_[-1]_5 chr6:31216593-31216693 2.3e-06 21_[-1]_50 chr16:31591976-31592076 3e-06 46_[+1]_25 chr13:59074028-59074128 3e-06 [+1]_71 chr3:132017757-132017857 3.3e-06 58_[-1]_13 chr1:58622252-58622352 3.9e-06 69_[-1]_2 chr10:88407030-88407130 4.2e-06 25_[+1]_46 chr13:72056434-72056534 4.2e-06 71_[+1] chr4:120718081-120718181 6.4e-06 8_[+1]_63 chr11:114638588-11463868 6.4e-06 12_[+1]_59 chr13:107246937-10724703 6.9e-06 6_[+1]_65 chr1:55960219-55960319 7.5e-06 17_[-1]_54 chr9:34797693-34797793 7.5e-06 30_[-1]_41 chrX:93068832-93068932 9.5e-06 21_[-1]_50 chr16:91761135-91761235 1.1e-05 63_[+1]_8 chr12:75362573-75362673 1.4e-05 15_[+1]_56 chr18:60747534-60747634 2.2e-05 11_[+1]_60 chr9:46814663-46814763 6.7e-05 5_[+1]_66 chr6:67014412-67014512 8e-05 24_[-1]_47 chr1:180778033-180778133 0.0003 52_[-1]_19 chr4:49285840-49285940 0.00041 18_[-1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGWGAGAGVGRRVGRGRGARRVAGSGRGV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VGWGAGAGVGRRVGRGRGARRVAGSGRGV width=29 seqs=68 chr3:19424147-19424247 ( 51) AGAGAGAGAGAGAGAGAGAGAGAGAGAGG 1 chr9:120363489-120363589 ( 54) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr11:33695032-33695132 ( 8) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr15:54245202-54245302 ( 30) CGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr11:26437174-26437274 ( 70) GGAGGGAGGGAGGGAGGGAGGAAGGAAGG 1 chr8:126660539-126660639 ( 61) CGAGAGAGAGAGCGAGAGCGAGAGCGAGA 1 chr13:14498729-14498829 ( 22) TGAGAGAGCGGAGGACGGGGAGTGGGAGG 1 chr9:34538333-34538433 ( 19) ACTGAGGGGGGAAGACAGAGAGAGAGAGA 1 chr15:30451199-30451299 ( 1) ACACACAGAGAGAGAGAGAGAGAGAGAGA 1 chr9:77469757-77469857 ( 26) GGAGGCAGAGGCGGGGTGGGGGAGGAGGC 1 chr2:139378769-139378869 ( 69) AGAGACAGAGAGGGATGGAGACTGGAGGA 1 chr18:56676469-56676569 ( 62) AGAAAGAGAGGAGGACAGAGAAGGATAGG 1 chr17:66221150-66221250 ( 16) AGTGAGAGAAGGGGAAGGAAAACGGGAGG 1 chr4:119933050-119933150 ( 45) CGAGTGAGCGAGCGAGAAAGTGAGTGAGG 1 chr5:69233569-69233669 ( 51) AGAAGCAGCTGAAGAGAGAAGGAAGGAGG 1 chr13:93057420-93057520 ( 51) GGAGAGGGGGAGAGATTGAGAGAGAGGAG 1 chrX:103066416-103066516 ( 3) GGAGAGAGAGGCCGAAAGGGGAGCCTGGG 1 chr11:82631194-82631294 ( 5) GAAAAGAGAGGAAGAAAAAGAAAGGGAGG 1 chr5:118458993-118459093 ( 22) ACTGAGAGAGAACGGGAGAGACCACAGGG 1 chr13:107888959-10788905 ( 42) GGAGACGGGGGCGGGGACCAGCGGGAGGA 1 chr18:25548292-25548392 ( 18) AGAATGAGGGAACGTGGGGGGGAGGGGCC 1 chr6:37216341-37216441 ( 37) ACTGAGGGAGGGAGGTGGAATGAGTCAGC 1 chr18:54901701-54901801 ( 39) AAAGAGGGGTGGGGCATGGAGGAGGGGGG 1 chr5:131814657-131814757 ( 25) GGGAACAGAGAGTGGGGAAGACAGTAGGC 1 chr10:82811834-82811934 ( 64) CGGAGGCGCGGAGGGCAGGAGCGGCGAGG 1 chr3:146381376-146381476 ( 32) ACAGGCAGATAGAGTGGAGAGGGGGTGGG 1 chr5:118115716-118115816 ( 63) AGTAGGAGGGGCAGGGTGTGAAAGGCAGG 1 chr6:10690463-10690563 ( 62) GCAGAGAGATGCGCAGAGAGGCAATGCGC 1 chr4:149796550-149796650 ( 27) GGAGACTGCTACGGTGGGAGAAACCTGGA 1 chr12:71371979-71372079 ( 1) GCGGGGCGGGGGGGGGAGAGCAGGGAACA 1 chr9:46723656-46723756 ( 3) GATGGGGGAGGGCGGGGCAGGGGGAATGG 1 chr4:138555454-138555554 ( 24) CGTGGGTGGAGGGGGTGGAGCAGGGAAGC 1 chr17:70629838-70629938 ( 72) AATAAGTGGGAGGGAGGAGGTGGGGTGGC 1 chr1:52578404-52578504 ( 56) GCTCAGAGGGGGGAAGGGAAGTTGCTGGC 1 chr4:5690358-5690458 ( 3) TGTGAGGGAAAGCCACAGGAAGAGCCAGC 1 chr4:46832806-46832906 ( 28) GGAAGCAGGGGGCGGGAGCAGAAGTTAAA 1 chr12:10940730-10940830 ( 34) GGGAAGGGAGGAAGTGAAAGAAAGCCAAA 1 chr4:128908501-128908601 ( 41) GCTGGGAGGGAGCGTGAAGATTAGCCGGG 1 chr10:59539358-59539458 ( 38) GGTGGCGGCGGCGGCGGGGAAAGCCTGGC 1 chr18:80682543-80682643 ( 21) GGAAACAAGGGACGTGGCAGTCTGGAGGG 1 chr6:127330128-127330228 ( 8) CCAATGGGCGGCCGCCGGAGGCCGCGGGG 1 chr11:35517509-35517609 ( 37) TGAAAGGGAAAACGGGACAAATGGGAGGA 1 chr16:7106357-7106457 ( 44) TGAAAGTGCTTGAGGGAGAGTCTGCGGGA 1 chr1:160329705-160329805 ( 8) GGCCAGAGCTGGTGAGGAAGAAACCAAGC 1 chr7:40797265-40797365 ( 24) TGTGAGAGAGCAAGAGGAGAAAAGTTGAG 1 chr10:119065365-11906546 ( 54) CCCGAGGACGGGAGGGAGAGCATACGAGG 1 chr14:30312208-30312308 ( 71) AGAAAGCAATAGCCACAGGAGGGGAGGGG 1 chr1:39921981-39922081 ( 67) GCTGAGGGGTTGGAGCAGAGAGGAGGAGA 1 chr6:31216593-31216693 ( 22) CGAGGCGGGTGACGTCCGAGGCGGGGTGG 1 chr16:31591976-31592076 ( 47) TGTGACAGCACAGCATAGGAGCAGGGGGC 1 chr13:59074028-59074128 ( 1) CCTGTGCGGAGGGCAAAGAGAAACCGGGG 1 chr3:132017757-132017857 ( 59) AGACAGAGCTCAGACGAGGAGAAGAGAGC 1 chr1:58622252-58622352 ( 70) GGAGGGAGATGCTGACACAGATGGAGGCG 1 chr10:88407030-88407130 ( 26) GGGGAGAGAAACCCTGGAAGTGTAGGAGA 1 chr13:72056434-72056534 ( 72) ACACAGAGGTACAGAGAGAAACAAAACGC 1 chr4:120718081-120718181 ( 9) CACAAGGGGTAAAGGAAGAGAAAAGTGGG 1 chr11:114638588-11463868 ( 13) CGGCGCTGGGAGGGGCACAAGCTGGTGGG 1 chr13:107246937-10724703 ( 7) TGTAGCCGCAGAGGATGGGGGGTGGGGCG 1 chr1:55960219-55960319 ( 18) GCAAGTAGAGGACCGGGAAAAGAAGCGGC 1 chr9:34797693-34797793 ( 31) AGAAACTGAAGAGGGAAAAATAAACGGGA 1 chrX:93068832-93068932 ( 22) AGCGAGCTGTGAGGAGCGGAGGTGGTAGA 1 chr16:91761135-91761235 ( 64) GCAGACAAAGGCTGGATAAAAGTGGAAGG 1 chr12:75362573-75362673 ( 16) TCAGAGAGCGAACACGGAAGACACGAAAC 1 chr18:60747534-60747634 ( 12) AGGGGCAGGACGGAGGACCAACAGTGGGA 1 chr9:46814663-46814763 ( 6) AGTCAGAGCTGCGCGTGAAACCCCGCGGG 1 chr6:67014412-67014512 ( 25) AGTAATATAGACCGAGTGAGTGACTGGAG 1 chr1:180778033-180778133 ( 53) CCCGAGGAATGGCAATCGGGCGTCGCGGC 1 chr4:49285840-49285940 ( 19) CGTGTGCGCGCGCGCGCGCGTGTGTGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGWGAGAGVGRRVGRGRGARRVAGSGRGV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.1047 E= 3.7e-062 35 -22 60 -124 -191 25 157 -1273 93 -160 -111 9 9 -111 143 -1273 126 -1273 25 -191 -1273 25 166 -323 105 -111 8 -165 -191 -1273 201 -323 67 8 54 -1273 -91 -1273 143 -15 46 -160 121 -323 16 -12 112 -1273 -7 40 78 -223 -165 -92 183 -1273 76 -134 54 -124 -124 -46 143 -124 89 -192 60 -165 -33 -111 160 -1273 122 -160 25 -423 41 -1273 150 -1273 76 -160 47 -91 1 8 94 -223 93 -192 -2 -53 -91 -75 169 -1273 -53 8 98 -107 -33 -92 112 -65 67 -292 112 -265 -143 -192 191 -1273 9 16 103 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGWGAGAGVGRRVGRGRGARRVAGSGRGV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 68 E= 3.7e-062 0.352941 0.191176 0.338235 0.117647 0.073529 0.264706 0.661765 0.000000 0.529412 0.073529 0.102941 0.294118 0.294118 0.102941 0.602941 0.000000 0.661765 0.000000 0.264706 0.073529 0.000000 0.264706 0.705882 0.029412 0.573529 0.102941 0.235294 0.088235 0.073529 0.000000 0.897059 0.029412 0.441176 0.235294 0.323529 0.000000 0.147059 0.000000 0.602941 0.250000 0.382353 0.073529 0.514706 0.029412 0.308824 0.205882 0.485294 0.000000 0.264706 0.294118 0.382353 0.058824 0.088235 0.117647 0.794118 0.000000 0.470588 0.088235 0.323529 0.117647 0.117647 0.161765 0.602941 0.117647 0.514706 0.058824 0.338235 0.088235 0.220588 0.102941 0.676471 0.000000 0.647059 0.073529 0.264706 0.014706 0.367647 0.000000 0.632353 0.000000 0.470588 0.073529 0.308824 0.147059 0.279412 0.235294 0.426471 0.058824 0.529412 0.058824 0.220588 0.191176 0.147059 0.132353 0.720588 0.000000 0.191176 0.235294 0.441176 0.132353 0.220588 0.117647 0.485294 0.176471 0.441176 0.029412 0.485294 0.044118 0.102941 0.058824 0.838235 0.000000 0.294118 0.250000 0.455882 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGWGAGAGVGRRVGRGRGARRVAGSGRGV MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GC][AT][GA][AG][GC][AG]G[AGC][GT][GA][GAC][GCA]G[AG]G[AG][GA][AG][GA][AG][GAC][AG]G[GC][GA][GA]G[GAC] -------------------------------------------------------------------------------- Time 525.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGYK MEME-2 width = 8 sites = 128 llr = 1120 E-value = 6.3e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGYK MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:3:::2 pos.-specific C a::71:3: probability G ::a::a:4 matrix T ::::9:75 bits 2.2 * * * 1.9 *** * 1.7 *** * 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 ******* (12.6 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTT consensus A CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGYK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr12:92775642-92775742 + 87 2.63e-05 CCAGCTAAGC CAGCTGTG GAGGCT chr17:70629838-70629938 - 50 2.63e-05 ATGGTCTCAG CAGCTGTT TGAGGCATTG chr6:49743110-49743210 - 9 2.63e-05 TGAGCAATGC CAGCTGTG AGCTGGAG chr8:14542233-14542333 + 78 2.63e-05 GAGAGCAGGG CAGCTGTT TGCCAGCGCA chr10:106596874-10659697 - 49 2.63e-05 GCTGAGCCCC CAGCTGTG CCTTTAGCTG chr9:93843828-93843928 - 69 2.63e-05 CGCTTTGATT CAGCTGTG AGTCACCATC chr16:84963467-84963567 + 49 2.63e-05 GAGGGAGGGG CAGCTGTG CCTAACGATC chr18:68123399-68123499 - 26 2.63e-05 CCAGTCTGTG CAGCTGTT GAGAGATGCT chr14:119832889-11983298 + 73 2.63e-05 GCTTGCTAAC CAGCTGTG TGCTCTGGTT chr1:17537440-17537540 - 83 2.63e-05 GCTGAGGCAA CAGCTGTG TGGCTCCCAG chr1:134916395-134916495 + 72 2.63e-05 gtgataactc cagctgtg tcaggttgac chr3:97255329-97255429 - 11 2.63e-05 CTCCTGCAGG CAGCTGTG GGTGAAAAAG chr19:25804864-25804964 + 44 2.63e-05 TTGTGAGAAA CAGCTGTG TTTCTCTGTT chr5:70491706-70491806 - 77 2.63e-05 GAACATCAGG CAGCTGTG GTTCTGTGTT chr15:4973287-4973387 + 69 2.63e-05 atctagcatg cagctgtt gatctaacaa chr3:110065238-110065338 + 78 2.63e-05 AGATTGCATA CAGCTGTT CTATAGGATG chr6:97758100-97758200 - 7 2.63e-05 TGCCAGCTGC CAGCTGTG GAAGAC chr14:75536707-75536807 - 7 2.63e-05 CAAACCAGCC CAGCTGTG GCAATT chr2:20453910-20454010 - 40 2.63e-05 GCTGCTGTTT CAGCTGTT GGTGAATCCT chr2:50493558-50493658 - 6 2.63e-05 GGACAGGATG CAGCTGTT CACTG chr19:16029165-16029265 + 47 2.63e-05 CACTAGGTGG CAGCTGTG GCTCCAAGCT chr4:152226940-152227040 + 17 2.63e-05 AGAAAGCGTT CAGCTGTG CAGTACGCAC chr6:24408581-24408681 + 9 2.63e-05 GGCAACAA CAGCTGTT CCTTGGCTTG chr4:148667914-148668014 - 19 2.63e-05 CACAGCTCAT CAGCTGTT TACACACTAG chr4:65959263-65959363 - 66 2.63e-05 AGGAAATTTG CAGCTGTT GCCTGTCTCG chr3:13839639-13839739 - 72 2.63e-05 GTTCCCTGTA CAGCTGTT ACAGAAATGT chrX:36291132-36291232 - 21 2.63e-05 ATGGAGGTAA CAGCTGTG TGCTTGGTCT chr15:73311762-73311862 + 87 2.63e-05 ccaaggcaca cagctgTG TTGGTG chr4:7364360-7364460 + 53 2.63e-05 ACTGATGTTA CAGCTGTT GTGATGTAGA chr8:127845228-127845328 + 50 2.63e-05 AGATTAGAGT CAGCTGTG GATGCATTTC chr14:93754210-93754310 + 11 2.63e-05 taaactcctt cagctgtg tgttttataa chr2:55183950-55184050 - 34 2.63e-05 TTCTGTACTC CAGCTGTT TCCTGCTATG chr15:30785653-30785753 + 39 2.63e-05 ggctactgtg cagctgtg cagtgcagct chr15:19872611-19872711 + 35 2.63e-05 TCGATTCAGC CAGCTGTG TCTTTAGCCA chr3:17834644-17834744 - 3 2.63e-05 AAGCCTACAG CAGCTGTG CT chr12:85563172-85563272 + 26 2.63e-05 TTTCTGATGT CAGCTGTG AGGAATGGAA chr7:89797724-89797824 - 37 2.63e-05 CCTAAATATA CAGCTGTG CGGGGTGAAC chr18:50400058-50400158 + 77 2.63e-05 TAATTGATTC CAGCTGTT TCTCCTGAAA chr4:99273892-99273992 + 52 2.63e-05 GACAGACCTA CAGCTGTT CTCCTAATTG chr7:72195628-72195728 - 57 2.63e-05 CTGCATAGAC CAGCTGTG GAGTTGCCAG chr12:54017218-54017318 - 37 2.63e-05 TGCAATGTCA CAGCTGTG TGGAAATTAT chr6:75340990-75341090 + 74 2.63e-05 AAGTCAAACA CAGCTGTG CATGCTTCTA chr14:46075349-46075449 + 26 2.63e-05 AATTCAGCAC CAGCTGTG TGTCTGAGAA chr4:5690358-5690458 + 46 2.63e-05 GTGCTAGCAG CAGCTGTG CACTCAGCAG chrX:10540717-10540817 + 68 2.63e-05 AACTTTGAAG CAGCTGTT CTGCTAGGTT chr4:65477080-65477180 - 82 2.63e-05 GGCGAGGCAG CAGCTGTG AGTCAGACTG chr1:35258631-35258731 - 9 2.63e-05 GATTTTCTAG CAGCTGTT GACAGCTT chr6:49633406-49633506 - 47 2.63e-05 ACGCCGGCAT CAGCTGTG TGCTTTCTGA chr12:5251212-5251312 + 72 2.63e-05 GTTAGGTGTG CAGCTGTG GCTTATGCCC chr17:58407742-58407842 - 27 2.63e-05 GTAAATGTGC CAGCTGTT GGTTGAGAAC chr16:21854465-21854565 + 53 4.74e-05 GGGCCAGTGC CAGCTGCT CGCTGGGCCT chr10:26703141-26703241 + 2 4.74e-05 g cagctgct cccggtgaaa chr16:22311494-22311594 - 12 4.74e-05 AAATGAGGCC CAGCTGCG TGCCAGGAAG chr4:3502491-3502591 + 49 4.74e-05 GGAAATACTG CAGCTGCT AAAGGCATTG chr17:3233921-3234021 - 38 4.74e-05 TATGGAGACA CAGCTGCG GCTTCCACCT chr3:81735421-81735521 - 54 4.74e-05 AGATCAGTGC CAGCTGCT TTATTACATG chr8:14258250-14258350 + 40 4.74e-05 ATAGTGGATG CAGCTGCT TCTTGCAAAG chr11:40482453-40482553 + 79 4.74e-05 gatcctatcc cagctgct ccACACCAca chr15:84582741-84582841 + 58 4.74e-05 AGAAGGAAGG CAGCTGCT GCTGTAGGCT chr15:74052930-74053030 - 65 4.74e-05 ACCCCAGGAG CAGCTGCT ACCCGCTCCT chr7:67110538-67110638 + 32 4.74e-05 ATCTGCCCAG CAGCTGCT CTGACTCCAT chr9:110268237-110268337 + 69 4.74e-05 TAGCTGCCAG CAGCTGCT CTGACATCGC chr11:6086937-6087037 - 44 4.74e-05 CTTGCAAAAT CAGCTGCT AATCTTGTTG chr1:189373703-189373803 - 10 4.74e-05 TCATTTGCGT CAGCTGCT AACACATTG chr8:90759512-90759612 - 35 4.74e-05 TTGCTACAGG CAGCTGCG CTTGAGCGAC chr12:10928729-10928829 - 71 4.74e-05 CCTGGGCTTG CAGCTGCT TCCTCTCCCA chr2:50902176-50902276 + 23 4.74e-05 GGGCTGTGTT CAGCTGCG GAGGGCTGAT chr6:148384386-148384486 - 41 4.74e-05 GGCTTTGTGT CAGCTGCT GGTGACACAA chr14:96028896-96028996 + 47 4.74e-05 GCCTGCTGTT CAGCTGCT GCTTAAAGAA chr10:116757342-11675744 - 31 6.20e-05 CCATGAGATC CAGCTGTA AGGCATTTTC chr14:13324246-13324346 + 59 6.20e-05 AAATCTAGGG CAGCTGTA GGAAAGCAAT chr7:55326902-55327002 - 47 6.20e-05 ATTGATTGTC CAGCTGTA GCAAAGACTA chr16:81285215-81285315 + 48 6.20e-05 AGAAATTCAG CAGCTGTA GAAAGCCCAA chr9:30134259-30134359 - 78 6.20e-05 TGCATAACTG CAGCTGTA CGCACATTGA chr15:93007327-93007427 - 28 6.20e-05 CTACTGCACC CAGCTGTA ACAAGGACTG chr11:82484225-82484325 + 50 9.46e-05 ACTTTTCTTG CAGATGTT CATCGCTCTG chr13:97892444-97892544 - 69 9.46e-05 AAGGCTAGAA CAGATGTT GTGAAGTGTG chr6:139309456-139309556 + 54 9.46e-05 ACCATGCACA CAGATGTT TACCCTAGTT chr10:114325381-11432548 - 47 9.46e-05 GTGCCTCTCA CAGATGTT TTGTGGTTGA chr8:104369708-104369808 - 61 9.46e-05 GCTGGGCTTG CAGATGTG TGCTGCCGTG chr10:49623592-49623692 + 49 9.46e-05 AGAAATTCCA CAGATGTT CACTGAATTT chr6:13138002-13138102 - 71 9.46e-05 TGAGTCTCCC CAGATGTT CCCGACATTT chr12:77504042-77504142 - 61 9.46e-05 GCAGTGGAGA CAGATGTG GAAGATGAGC chr8:74695808-74695908 - 41 9.46e-05 TGCAAGTAGC CAGATGTG TCACATGTCT chr3:141729536-141729636 - 61 9.46e-05 AGCCAATTAG CAGATGTT GAATCAGATC chr19:45337548-45337648 - 69 9.46e-05 CTAGACATTG CAGATGTG GACAGATGTT chr2:7195949-7196049 + 58 9.46e-05 ACAACGAGAC CAGATGTT TGCTTATGCA chr4:46923467-46923567 - 79 9.46e-05 GATGTGTGCA CAGATGTG CATGCAGGCA chr18:57388257-57388357 + 39 9.46e-05 AGCCATTCTG CAGATGTT CTCTGCATTG chr2:3168187-3168287 + 40 9.46e-05 AGTCTACTAT CAGATGTG ATATAAATAT chr3:90183021-90183121 - 21 9.46e-05 TTTAAATTCT CAGATGTG AATATTCACA chr15:42800824-42800924 + 2 9.46e-05 G CAGATGTT CACTCTTTCA chr8:124193861-124193961 - 23 9.46e-05 GACCAGCAGC CAGATGTG GAAGCTGAGC chr12:71371979-71372079 - 62 9.46e-05 CAAGAGGCAT CAGATGTT GGAGTTGGTA chr15:12084153-12084253 + 9 9.46e-05 tggaggtc cagatgtt cacgctggga chr5:52036580-52036680 - 64 1.06e-04 TCTCATTCCC CAGCTGCA CCCACAGGCC chr6:6059861-6059961 + 54 1.06e-04 AGCCCTGAGA CAGCTGCA CAGTTTGAAT chr10:25074941-25075041 - 27 1.06e-04 GTGAAATTGC CAGCTGCA GATAGTTTAT chr2:143224755-143224855 + 23 1.06e-04 TGCAGAGCTC CAGCTGCA TCTGATACAC chr1:8867715-8867815 + 20 1.06e-04 acacatgaac cagctgca gcttaatcct chr16:96888022-96888122 + 35 1.06e-04 CTGAGTAACC CAGCTGCA AAGAATGTCT chr1:72455874-72455974 + 24 1.06e-04 CCATGACTGC CAGCTGCA GCCCTGTCTC chrX:167081307-167081407 - 73 1.06e-04 TACAAAGTGC CAGCTGCA CACACCAAAA chr9:46814663-46814763 + 87 1.06e-04 TGGGAATCTT CAGCTGCA GTGTTT chr3:63398610-63398710 + 31 1.33e-04 ATGAGGAGAC CAGATGCT TAACACCTGG chr12:49887202-49887302 - 47 1.33e-04 CATCAGATTT CAGATGCT CGGCAGTTGA chr13:46180414-46180514 - 50 1.33e-04 GCTCGCCTTG CAGATGCT CATGCTGTTC chr13:18456613-18456713 + 8 1.33e-04 CTGCACA CAGATGCT ATTATAAAGA chr11:33685843-33685943 - 18 1.33e-04 GATGGAGAGG CAGATGCT CAAGAGACTG chr10:75134781-75134881 + 62 1.33e-04 CCAGGAACAG CAGATGCT CCGGGTTTCT chr6:77578546-77578646 - 22 1.33e-04 GACATGTTTA CAGATGCT GTATGGACAT chr10:23086537-23086637 - 8 1.33e-04 AGAATTTTAA CAGATGCT GTGATCA chr11:25990806-25990906 + 28 1.33e-04 AGGAAATCAG CAGATGCT CTACTTTTCA chr9:68591010-68591110 + 47 1.33e-04 CATCTTCTTA CAGATGCG TGCGCAGCTT chr12:29029385-29029485 + 66 1.33e-04 GTGGAAGCAG CAGATGCT GTGGGGCATA chr4:142574559-142574659 + 71 1.51e-04 GTCCAAAGAG CAGATGTA ATTACTCTTA chr5:14833120-14833220 + 49 1.51e-04 TTGGGAAATA CAGATGTA CTGAAGGAGA chr10:54197693-54197793 + 4 1.51e-04 tta cagatgta gtcagcaagc chr4:68930043-68930143 - 68 1.51e-04 TGAGTGGAAT CAGATGTA TATGTGCATG chr15:15888785-15888885 - 73 1.51e-04 TGAAAGAACC CAGATGTA GCTGTATCTT chr14:64127245-64127345 + 66 1.51e-04 GTGAACACCA CAGATGTA AGGAAGTGTC chr1:57076030-57076130 - 56 1.86e-04 AATTTTCCTT CAGCCGTT CAAGTGGGGT chr19:6612399-6612499 + 33 1.86e-04 TCCACATCCA CAGCCGTT GTCGGCAGTG chr15:37062493-37062593 - 66 2.03e-04 GCCATCTTCC CAGCCGCG ATCGACAGAG chr16:75090409-75090509 + 63 2.03e-04 CATCACCATA CAGCCGCG CTAGCATATT chr2:168424175-168424275 + 26 2.03e-04 CCTCCAGTTG CAGCCGCT CAGCTAGTGA chr15:12681222-12681322 + 22 2.41e-04 ACTGGGACCC CAGACGTT GGAAGGCTGG chr4:19332840-19332940 - 44 2.72e-04 GCGCATTTTA CAGACGCG AGACTTGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGYK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:92775642-92775742 2.6e-05 86_[+2]_6 chr17:70629838-70629938 2.6e-05 49_[-2]_43 chr6:49743110-49743210 2.6e-05 8_[-2]_84 chr8:14542233-14542333 2.6e-05 77_[+2]_15 chr10:106596874-10659697 2.6e-05 48_[-2]_44 chr9:93843828-93843928 2.6e-05 68_[-2]_24 chr16:84963467-84963567 2.6e-05 48_[+2]_44 chr18:68123399-68123499 2.6e-05 25_[-2]_67 chr14:119832889-11983298 2.6e-05 72_[+2]_20 chr1:17537440-17537540 2.6e-05 82_[-2]_10 chr1:134916395-134916495 2.6e-05 71_[+2]_21 chr3:97255329-97255429 2.6e-05 10_[-2]_82 chr19:25804864-25804964 2.6e-05 43_[+2]_49 chr5:70491706-70491806 2.6e-05 76_[-2]_16 chr15:4973287-4973387 2.6e-05 68_[+2]_24 chr3:110065238-110065338 2.6e-05 77_[+2]_15 chr6:97758100-97758200 2.6e-05 6_[-2]_86 chr14:75536707-75536807 2.6e-05 6_[-2]_86 chr2:20453910-20454010 2.6e-05 39_[-2]_53 chr2:50493558-50493658 2.6e-05 5_[-2]_87 chr19:16029165-16029265 2.6e-05 46_[+2]_46 chr4:152226940-152227040 2.6e-05 16_[+2]_76 chr6:24408581-24408681 2.6e-05 8_[+2]_84 chr4:148667914-148668014 2.6e-05 18_[-2]_74 chr4:65959263-65959363 2.6e-05 65_[-2]_27 chr3:13839639-13839739 2.6e-05 71_[-2]_21 chrX:36291132-36291232 2.6e-05 20_[-2]_72 chr15:73311762-73311862 2.6e-05 86_[+2]_6 chr4:7364360-7364460 2.6e-05 52_[+2]_40 chr8:127845228-127845328 2.6e-05 49_[+2]_43 chr14:93754210-93754310 2.6e-05 10_[+2]_82 chr2:55183950-55184050 2.6e-05 33_[-2]_59 chr15:30785653-30785753 2.6e-05 38_[+2]_54 chr15:19872611-19872711 2.6e-05 34_[+2]_58 chr3:17834644-17834744 2.6e-05 2_[-2]_90 chr12:85563172-85563272 2.6e-05 25_[+2]_67 chr7:89797724-89797824 2.6e-05 36_[-2]_56 chr18:50400058-50400158 2.6e-05 76_[+2]_16 chr4:99273892-99273992 2.6e-05 51_[+2]_41 chr7:72195628-72195728 2.6e-05 56_[-2]_36 chr12:54017218-54017318 2.6e-05 36_[-2]_56 chr6:75340990-75341090 2.6e-05 73_[+2]_19 chr14:46075349-46075449 2.6e-05 25_[+2]_67 chr4:5690358-5690458 2.6e-05 45_[+2]_47 chrX:10540717-10540817 2.6e-05 67_[+2]_25 chr4:65477080-65477180 2.6e-05 81_[-2]_11 chr1:35258631-35258731 2.6e-05 8_[-2]_84 chr6:49633406-49633506 2.6e-05 46_[-2]_46 chr12:5251212-5251312 2.6e-05 71_[+2]_21 chr17:58407742-58407842 2.6e-05 26_[-2]_66 chr16:21854465-21854565 4.7e-05 52_[+2]_40 chr10:26703141-26703241 4.7e-05 1_[+2]_91 chr16:22311494-22311594 4.7e-05 11_[-2]_81 chr4:3502491-3502591 4.7e-05 48_[+2]_44 chr17:3233921-3234021 4.7e-05 37_[-2]_55 chr3:81735421-81735521 4.7e-05 53_[-2]_39 chr8:14258250-14258350 4.7e-05 39_[+2]_53 chr11:40482453-40482553 4.7e-05 78_[+2]_14 chr15:84582741-84582841 4.7e-05 57_[+2]_35 chr15:74052930-74053030 4.7e-05 64_[-2]_28 chr7:67110538-67110638 4.7e-05 31_[+2]_61 chr9:110268237-110268337 4.7e-05 68_[+2]_24 chr11:6086937-6087037 4.7e-05 43_[-2]_49 chr1:189373703-189373803 4.7e-05 9_[-2]_83 chr8:90759512-90759612 4.7e-05 34_[-2]_58 chr12:10928729-10928829 4.7e-05 70_[-2]_22 chr2:50902176-50902276 4.7e-05 22_[+2]_70 chr6:148384386-148384486 4.7e-05 40_[-2]_52 chr14:96028896-96028996 4.7e-05 46_[+2]_46 chr10:116757342-11675744 6.2e-05 30_[-2]_62 chr14:13324246-13324346 6.2e-05 58_[+2]_34 chr7:55326902-55327002 6.2e-05 46_[-2]_46 chr16:81285215-81285315 6.2e-05 47_[+2]_45 chr9:30134259-30134359 6.2e-05 77_[-2]_15 chr15:93007327-93007427 6.2e-05 27_[-2]_65 chr11:82484225-82484325 9.5e-05 49_[+2]_43 chr13:97892444-97892544 9.5e-05 68_[-2]_24 chr6:139309456-139309556 9.5e-05 53_[+2]_39 chr10:114325381-11432548 9.5e-05 46_[-2]_46 chr8:104369708-104369808 9.5e-05 60_[-2]_32 chr10:49623592-49623692 9.5e-05 48_[+2]_44 chr6:13138002-13138102 9.5e-05 70_[-2]_22 chr12:77504042-77504142 9.5e-05 60_[-2]_32 chr8:74695808-74695908 9.5e-05 40_[-2]_52 chr3:141729536-141729636 9.5e-05 60_[-2]_32 chr19:45337548-45337648 9.5e-05 68_[-2]_24 chr2:7195949-7196049 9.5e-05 57_[+2]_35 chr4:46923467-46923567 9.5e-05 78_[-2]_14 chr18:57388257-57388357 9.5e-05 38_[+2]_54 chr2:3168187-3168287 9.5e-05 39_[+2]_53 chr3:90183021-90183121 9.5e-05 20_[-2]_72 chr15:42800824-42800924 9.5e-05 1_[+2]_91 chr8:124193861-124193961 9.5e-05 22_[-2]_70 chr12:71371979-71372079 9.5e-05 61_[-2]_31 chr15:12084153-12084253 9.5e-05 8_[+2]_84 chr5:52036580-52036680 0.00011 63_[-2]_29 chr6:6059861-6059961 0.00011 53_[+2]_39 chr10:25074941-25075041 0.00011 26_[-2]_66 chr2:143224755-143224855 0.00011 22_[+2]_70 chr1:8867715-8867815 0.00011 19_[+2]_73 chr16:96888022-96888122 0.00011 34_[+2]_58 chr1:72455874-72455974 0.00011 23_[+2]_69 chrX:167081307-167081407 0.00011 72_[-2]_20 chr9:46814663-46814763 0.00011 86_[+2]_6 chr3:63398610-63398710 0.00013 30_[+2]_62 chr12:49887202-49887302 0.00013 46_[-2]_46 chr13:46180414-46180514 0.00013 49_[-2]_43 chr13:18456613-18456713 0.00013 7_[+2]_85 chr11:33685843-33685943 0.00013 17_[-2]_75 chr10:75134781-75134881 0.00013 61_[+2]_31 chr6:77578546-77578646 0.00013 21_[-2]_71 chr10:23086537-23086637 0.00013 7_[-2]_85 chr11:25990806-25990906 0.00013 27_[+2]_65 chr9:68591010-68591110 0.00013 46_[+2]_46 chr12:29029385-29029485 0.00013 65_[+2]_27 chr4:142574559-142574659 0.00015 70_[+2]_22 chr5:14833120-14833220 0.00015 48_[+2]_44 chr10:54197693-54197793 0.00015 3_[+2]_89 chr4:68930043-68930143 0.00015 67_[-2]_25 chr15:15888785-15888885 0.00015 72_[-2]_20 chr14:64127245-64127345 0.00015 65_[+2]_27 chr1:57076030-57076130 0.00019 55_[-2]_37 chr19:6612399-6612499 0.00019 32_[+2]_60 chr15:37062493-37062593 0.0002 65_[-2]_27 chr16:75090409-75090509 0.0002 62_[+2]_30 chr2:168424175-168424275 0.0002 25_[+2]_67 chr15:12681222-12681322 0.00024 21_[+2]_71 chr4:19332840-19332940 0.00027 43_[-2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGYK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGYK width=8 seqs=128 chr12:92775642-92775742 ( 87) CAGCTGTG 1 chr17:70629838-70629938 ( 50) CAGCTGTT 1 chr6:49743110-49743210 ( 9) CAGCTGTG 1 chr8:14542233-14542333 ( 78) CAGCTGTT 1 chr10:106596874-10659697 ( 49) CAGCTGTG 1 chr9:93843828-93843928 ( 69) CAGCTGTG 1 chr16:84963467-84963567 ( 49) CAGCTGTG 1 chr18:68123399-68123499 ( 26) CAGCTGTT 1 chr14:119832889-11983298 ( 73) CAGCTGTG 1 chr1:17537440-17537540 ( 83) CAGCTGTG 1 chr1:134916395-134916495 ( 72) CAGCTGTG 1 chr3:97255329-97255429 ( 11) CAGCTGTG 1 chr19:25804864-25804964 ( 44) CAGCTGTG 1 chr5:70491706-70491806 ( 77) CAGCTGTG 1 chr15:4973287-4973387 ( 69) CAGCTGTT 1 chr3:110065238-110065338 ( 78) CAGCTGTT 1 chr6:97758100-97758200 ( 7) CAGCTGTG 1 chr14:75536707-75536807 ( 7) CAGCTGTG 1 chr2:20453910-20454010 ( 40) CAGCTGTT 1 chr2:50493558-50493658 ( 6) CAGCTGTT 1 chr19:16029165-16029265 ( 47) CAGCTGTG 1 chr4:152226940-152227040 ( 17) CAGCTGTG 1 chr6:24408581-24408681 ( 9) CAGCTGTT 1 chr4:148667914-148668014 ( 19) CAGCTGTT 1 chr4:65959263-65959363 ( 66) CAGCTGTT 1 chr3:13839639-13839739 ( 72) CAGCTGTT 1 chrX:36291132-36291232 ( 21) CAGCTGTG 1 chr15:73311762-73311862 ( 87) CAGCTGTG 1 chr4:7364360-7364460 ( 53) CAGCTGTT 1 chr8:127845228-127845328 ( 50) CAGCTGTG 1 chr14:93754210-93754310 ( 11) CAGCTGTG 1 chr2:55183950-55184050 ( 34) CAGCTGTT 1 chr15:30785653-30785753 ( 39) CAGCTGTG 1 chr15:19872611-19872711 ( 35) CAGCTGTG 1 chr3:17834644-17834744 ( 3) CAGCTGTG 1 chr12:85563172-85563272 ( 26) CAGCTGTG 1 chr7:89797724-89797824 ( 37) CAGCTGTG 1 chr18:50400058-50400158 ( 77) CAGCTGTT 1 chr4:99273892-99273992 ( 52) CAGCTGTT 1 chr7:72195628-72195728 ( 57) CAGCTGTG 1 chr12:54017218-54017318 ( 37) CAGCTGTG 1 chr6:75340990-75341090 ( 74) CAGCTGTG 1 chr14:46075349-46075449 ( 26) CAGCTGTG 1 chr4:5690358-5690458 ( 46) CAGCTGTG 1 chrX:10540717-10540817 ( 68) CAGCTGTT 1 chr4:65477080-65477180 ( 82) CAGCTGTG 1 chr1:35258631-35258731 ( 9) CAGCTGTT 1 chr6:49633406-49633506 ( 47) CAGCTGTG 1 chr12:5251212-5251312 ( 72) CAGCTGTG 1 chr17:58407742-58407842 ( 27) CAGCTGTT 1 chr16:21854465-21854565 ( 53) CAGCTGCT 1 chr10:26703141-26703241 ( 2) CAGCTGCT 1 chr16:22311494-22311594 ( 12) CAGCTGCG 1 chr4:3502491-3502591 ( 49) CAGCTGCT 1 chr17:3233921-3234021 ( 38) CAGCTGCG 1 chr3:81735421-81735521 ( 54) CAGCTGCT 1 chr8:14258250-14258350 ( 40) CAGCTGCT 1 chr11:40482453-40482553 ( 79) CAGCTGCT 1 chr15:84582741-84582841 ( 58) CAGCTGCT 1 chr15:74052930-74053030 ( 65) CAGCTGCT 1 chr7:67110538-67110638 ( 32) CAGCTGCT 1 chr9:110268237-110268337 ( 69) CAGCTGCT 1 chr11:6086937-6087037 ( 44) CAGCTGCT 1 chr1:189373703-189373803 ( 10) CAGCTGCT 1 chr8:90759512-90759612 ( 35) CAGCTGCG 1 chr12:10928729-10928829 ( 71) CAGCTGCT 1 chr2:50902176-50902276 ( 23) CAGCTGCG 1 chr6:148384386-148384486 ( 41) CAGCTGCT 1 chr14:96028896-96028996 ( 47) CAGCTGCT 1 chr10:116757342-11675744 ( 31) CAGCTGTA 1 chr14:13324246-13324346 ( 59) CAGCTGTA 1 chr7:55326902-55327002 ( 47) CAGCTGTA 1 chr16:81285215-81285315 ( 48) CAGCTGTA 1 chr9:30134259-30134359 ( 78) CAGCTGTA 1 chr15:93007327-93007427 ( 28) CAGCTGTA 1 chr11:82484225-82484325 ( 50) CAGATGTT 1 chr13:97892444-97892544 ( 69) CAGATGTT 1 chr6:139309456-139309556 ( 54) CAGATGTT 1 chr10:114325381-11432548 ( 47) CAGATGTT 1 chr8:104369708-104369808 ( 61) CAGATGTG 1 chr10:49623592-49623692 ( 49) CAGATGTT 1 chr6:13138002-13138102 ( 71) CAGATGTT 1 chr12:77504042-77504142 ( 61) CAGATGTG 1 chr8:74695808-74695908 ( 41) CAGATGTG 1 chr3:141729536-141729636 ( 61) CAGATGTT 1 chr19:45337548-45337648 ( 69) CAGATGTG 1 chr2:7195949-7196049 ( 58) CAGATGTT 1 chr4:46923467-46923567 ( 79) CAGATGTG 1 chr18:57388257-57388357 ( 39) CAGATGTT 1 chr2:3168187-3168287 ( 40) CAGATGTG 1 chr3:90183021-90183121 ( 21) CAGATGTG 1 chr15:42800824-42800924 ( 2) CAGATGTT 1 chr8:124193861-124193961 ( 23) CAGATGTG 1 chr12:71371979-71372079 ( 62) CAGATGTT 1 chr15:12084153-12084253 ( 9) CAGATGTT 1 chr5:52036580-52036680 ( 64) CAGCTGCA 1 chr6:6059861-6059961 ( 54) CAGCTGCA 1 chr10:25074941-25075041 ( 27) CAGCTGCA 1 chr2:143224755-143224855 ( 23) CAGCTGCA 1 chr1:8867715-8867815 ( 20) CAGCTGCA 1 chr16:96888022-96888122 ( 35) CAGCTGCA 1 chr1:72455874-72455974 ( 24) CAGCTGCA 1 chrX:167081307-167081407 ( 73) CAGCTGCA 1 chr9:46814663-46814763 ( 87) CAGCTGCA 1 chr3:63398610-63398710 ( 31) CAGATGCT 1 chr12:49887202-49887302 ( 47) CAGATGCT 1 chr13:46180414-46180514 ( 50) CAGATGCT 1 chr13:18456613-18456713 ( 8) CAGATGCT 1 chr11:33685843-33685943 ( 18) CAGATGCT 1 chr10:75134781-75134881 ( 62) CAGATGCT 1 chr6:77578546-77578646 ( 22) CAGATGCT 1 chr10:23086537-23086637 ( 8) CAGATGCT 1 chr11:25990806-25990906 ( 28) CAGATGCT 1 chr9:68591010-68591110 ( 47) CAGATGCG 1 chr12:29029385-29029485 ( 66) CAGATGCT 1 chr4:142574559-142574659 ( 71) CAGATGTA 1 chr5:14833120-14833220 ( 49) CAGATGTA 1 chr10:54197693-54197793 ( 4) CAGATGTA 1 chr4:68930043-68930143 ( 68) CAGATGTA 1 chr15:15888785-15888885 ( 73) CAGATGTA 1 chr14:64127245-64127345 ( 66) CAGATGTA 1 chr1:57076030-57076130 ( 56) CAGCCGTT 1 chr19:6612399-6612499 ( 33) CAGCCGTT 1 chr15:37062493-37062593 ( 66) CAGCCGCG 1 chr16:75090409-75090509 ( 63) CAGCCGCG 1 chr2:168424175-168424275 ( 26) CAGCCGCT 1 chr15:12681222-12681322 ( 22) CAGACGTT 1 chr4:19332840-19332940 ( 44) CAGACGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGYK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.5039 E= 6.3e-040 -1364 216 -1364 -1364 185 -1364 -1364 -1364 -1364 -1364 216 -1364 14 164 -1364 -1364 -1364 -203 -1364 177 -1364 -1364 216 -1364 -1364 59 -1364 126 -76 -1364 75 73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGYK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 128 E= 6.3e-040 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.304688 0.695312 0.000000 0.000000 0.000000 0.054688 0.000000 0.945312 0.000000 0.000000 1.000000 0.000000 0.000000 0.335938 0.000000 0.664062 0.164062 0.000000 0.375000 0.460938 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGYK MEME-2 regular expression -------------------------------------------------------------------------------- CAG[CA]TG[TC][TG] -------------------------------------------------------------------------------- Time 994.76 secs. ******************************************************************************** ******************************************************************************** MOTIF RCCACYAGRKGGCAV MEME-3 width = 15 sites = 25 llr = 331 E-value = 2.0e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCAV MEME-3 Description -------------------------------------------------------------------------------- Simplified A 31:7:1a:5:::174 pos.-specific C :9a:74::::::8:2 probability G 5::131:a56aa:24 matrix T 2::2:4:::3::1:: bits 2.2 * * ** 1.9 * ** ** 1.7 ** ** ** 1.5 ** ** ** Relative 1.3 ** * ** ** Entropy 1.1 ** * *** *** (19.1 bits) 0.9 ** * *** **** 0.6 **** ******** 0.4 ***** ********* 0.2 *************** 0.0 --------------- Multilevel GCCACCAGAGGGCAA consensus A GT GT GG sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCAV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr14:31954851-31954951 + 55 2.51e-09 TTGTGCAGTG GCCACCAGAGGGCAA CAGAAGAACA chr15:91969327-91969427 + 44 6.30e-09 AAAACGGACT GCCACCAGGTGGCAG CAAAGAGTCA chr3:17834644-17834744 + 58 1.52e-08 CATTACAGTG GCCACTAGATGGCAG TCCTGAGAGC chr13:41571980-41572080 - 75 2.48e-08 TTTTGTGGTC TCCACCAGAGGGCAA ACTGTCCCGC chr5:80508613-80508713 - 73 3.16e-08 AGCAACAACT GCCACCAGATGGCAC CAAATTGCAG chrX:93911164-93911264 - 40 5.81e-08 ATATCTGTAG TCCACTAGGGGGCAC CAGACTCCAG chr10:24630641-24630741 + 19 6.69e-08 TCCAAGACTG GCCAGCAGGGGGCGA ACAATTCCTC chr13:109558168-10955826 + 40 1.34e-07 TCAGCCCATG GCCACTAGAGGGAAA CAGTGTGCCC chr13:76759981-76760081 + 55 1.34e-07 TCTAAGAATG ACCAGCAGGTGGCAG GTTTGCCTCA chr7:119023599-119023699 + 16 1.51e-07 CCAGGGTACT GCCGGCAGAGGGCAG AGTGAGACTC chr4:128908501-128908601 + 21 1.71e-07 ttccagattg tcctctagggggcag tatcacccGG chr3:117438682-117438782 - 57 1.71e-07 TCCGACTGCT ACCACGAGGTGGCAG ACGTCTCCAA chr11:107506211-10750631 + 67 2.52e-07 GGGCCTAGAG GCCACCAGGGGGAGA CTGTCATTAA chr1:55960219-55960319 + 60 3.06e-07 CTAAACGTCA GCCTGTAGGGGGCAC TCCTGAGCTG chr1:57428889-57428989 + 8 4.64e-07 TGTTTTG GCCAGCAGGCGGCAG CCTTTGCTAA chr6:77578546-77578646 - 74 6.02e-07 TAAAGATGCG TCCAGAAGAGGGCAG ACTTGTATGC chr19:30205372-30205472 - 20 9.09e-07 TGTGAAAACG AACACTAGATGGCAG CATTCCGGCA chr19:45337548-45337648 - 22 1.15e-06 TATAACAACG GCCTCCAGAAGGCAA TTCCAATTTG chr2:152197181-152197281 - 43 1.42e-06 CTGGTGACAG ACCACTAGATGGAGA CTCTGGGTCG chr18:82526033-82526133 + 78 1.52e-06 TATACCATCC ACCAGAAGAGGGCGC CACTGCTC chr4:120368593-120368693 - 57 1.52e-06 GAAGCCAAGG GCCCCTAGGTGGCGC ACCTTCCTAG chr4:19332840-19332940 - 67 1.64e-06 CGAGAAGAGG AACGCTAGAGGGCAG TAAAGGCGCA chr15:38247754-38247854 - 60 2.91e-06 ACCTGGGCTC ACCGCTAGGGGGTGA TGGAGCCCTC chr1:160329705-160329805 - 75 3.46e-06 TCCATTAGAC CCCACGAGGGGGTAA GAATGTAGTT chr8:90759512-90759612 + 63 5.02e-06 ATGCTCTCCA TCCTCGAGAGGGCTA GGGAGTAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCAV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:31954851-31954951 2.5e-09 54_[+3]_31 chr15:91969327-91969427 6.3e-09 43_[+3]_42 chr3:17834644-17834744 1.5e-08 57_[+3]_28 chr13:41571980-41572080 2.5e-08 74_[-3]_11 chr5:80508613-80508713 3.2e-08 72_[-3]_13 chrX:93911164-93911264 5.8e-08 39_[-3]_46 chr10:24630641-24630741 6.7e-08 18_[+3]_67 chr13:109558168-10955826 1.3e-07 39_[+3]_46 chr13:76759981-76760081 1.3e-07 54_[+3]_31 chr7:119023599-119023699 1.5e-07 15_[+3]_70 chr4:128908501-128908601 1.7e-07 20_[+3]_65 chr3:117438682-117438782 1.7e-07 56_[-3]_29 chr11:107506211-10750631 2.5e-07 66_[+3]_19 chr1:55960219-55960319 3.1e-07 59_[+3]_26 chr1:57428889-57428989 4.6e-07 7_[+3]_78 chr6:77578546-77578646 6e-07 73_[-3]_12 chr19:30205372-30205472 9.1e-07 19_[-3]_66 chr19:45337548-45337648 1.1e-06 21_[-3]_64 chr2:152197181-152197281 1.4e-06 42_[-3]_43 chr18:82526033-82526133 1.5e-06 77_[+3]_8 chr4:120368593-120368693 1.5e-06 56_[-3]_29 chr4:19332840-19332940 1.6e-06 66_[-3]_19 chr15:38247754-38247854 2.9e-06 59_[-3]_26 chr1:160329705-160329805 3.5e-06 74_[-3]_11 chr8:90759512-90759612 5e-06 62_[+3]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCAV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCCACYAGRKGGCAV width=15 seqs=25 chr14:31954851-31954951 ( 55) GCCACCAGAGGGCAA 1 chr15:91969327-91969427 ( 44) GCCACCAGGTGGCAG 1 chr3:17834644-17834744 ( 58) GCCACTAGATGGCAG 1 chr13:41571980-41572080 ( 75) TCCACCAGAGGGCAA 1 chr5:80508613-80508713 ( 73) GCCACCAGATGGCAC 1 chrX:93911164-93911264 ( 40) TCCACTAGGGGGCAC 1 chr10:24630641-24630741 ( 19) GCCAGCAGGGGGCGA 1 chr13:109558168-10955826 ( 40) GCCACTAGAGGGAAA 1 chr13:76759981-76760081 ( 55) ACCAGCAGGTGGCAG 1 chr7:119023599-119023699 ( 16) GCCGGCAGAGGGCAG 1 chr4:128908501-128908601 ( 21) TCCTCTAGGGGGCAG 1 chr3:117438682-117438782 ( 57) ACCACGAGGTGGCAG 1 chr11:107506211-10750631 ( 67) GCCACCAGGGGGAGA 1 chr1:55960219-55960319 ( 60) GCCTGTAGGGGGCAC 1 chr1:57428889-57428989 ( 8) GCCAGCAGGCGGCAG 1 chr6:77578546-77578646 ( 74) TCCAGAAGAGGGCAG 1 chr19:30205372-30205472 ( 20) AACACTAGATGGCAG 1 chr19:45337548-45337648 ( 22) GCCTCCAGAAGGCAA 1 chr2:152197181-152197281 ( 43) ACCACTAGATGGAGA 1 chr18:82526033-82526133 ( 78) ACCAGAAGAGGGCGC 1 chr4:120368593-120368693 ( 57) GCCCCTAGGTGGCGC 1 chr4:19332840-19332940 ( 67) AACGCTAGAGGGCAG 1 chr15:38247754-38247854 ( 60) ACCGCTAGGGGGTGA 1 chr1:160329705-160329805 ( 75) CCCACGAGGGGGTAA 1 chr8:90759512-90759612 ( 63) TCCTCGAGAGGGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCAV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.5008 E= 2.0e-012 2 -248 111 -47 -179 204 -1129 -1129 -1129 216 -1129 -1129 130 -248 -89 -79 -1129 169 33 -1129 -179 84 -89 53 185 -1129 -1129 -1129 -1129 -1129 216 -1129 91 -1129 111 -1129 -279 -248 143 21 -1129 -1129 216 -1129 -1129 -1129 216 -1129 -121 184 -1129 -179 138 -1129 11 -279 53 -16 84 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCAV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 25 E= 2.0e-012 0.280000 0.040000 0.480000 0.200000 0.080000 0.920000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.680000 0.040000 0.120000 0.160000 0.000000 0.720000 0.280000 0.000000 0.080000 0.400000 0.120000 0.400000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.520000 0.000000 0.480000 0.000000 0.040000 0.040000 0.600000 0.320000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.120000 0.800000 0.000000 0.080000 0.720000 0.000000 0.240000 0.040000 0.400000 0.200000 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCAV MEME-3 regular expression -------------------------------------------------------------------------------- [GAT]CCA[CG][CT]AG[AG][GT]GGC[AG][AGC] -------------------------------------------------------------------------------- Time 1439.25 secs. ******************************************************************************** ******************************************************************************** MOTIF MCACACAYACACACA MEME-4 width = 15 sites = 31 llr = 378 E-value = 1.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCACACAYACACACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4:727:729:8:a:7 pos.-specific C 5a17:8:5:929:71 probability G 1::1322::::::21 matrix T ::1:::131::1::1 bits 2.2 * 1.9 * * 1.7 * * ** 1.5 * * ** Relative 1.3 * * ** *** Entropy 1.1 * * ****** (17.6 bits) 0.9 ***** ****** 0.6 ****** ******* 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CCACACACACACACA consensus A GG T C G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACAYACACACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr12:107931314-10793141 + 2 1.72e-09 c acacacacacacaca cactcacaca chr10:90778024-90778124 - 7 1.72e-09 ATATATGTAC ACACACACACACACA CATATA chr15:30451199-30451299 - 31 1.72e-09 CCTCTGACAC ACACACACACACACA CACACACAGA chr4:49285840-49285940 + 49 1.72e-09 gcgcacacgc acacacacacacaca cacacacaca chr2:66214285-66214385 + 80 1.72e-09 acaaacaggc acacacacacacaca cacaca chr7:143294947-143295047 + 20 3.28e-09 CACTGTAGAC CCACACATACACACA CCCAACTCGG chr17:10251975-10252075 + 14 1.09e-07 CTGACAGATG ACAGACATACACACA GGCAGGCAGG chr6:49633406-49633506 - 1 2.05e-07 CATCAGGGAA CCACACACAGACACA chr6:99339061-99339161 + 70 2.91e-07 AACCAGGAAG CCACAGACACACACT TTGGTCTTTT chr11:107506211-10750631 + 1 2.91e-07 . tCACACATACACACA TCCGTTTTGT chr18:77432595-77432695 - 85 3.56e-07 G ACCCACGTACACACA GACGTATGGG chr12:82147074-82147174 + 68 7.43e-07 AGGGACAAAT CCAGGCAAACACAGA TCCGTGAGGA chr18:6191002-6191102 - 75 1.00e-06 GTGACTAGTT CCAGACGTACACACC TATATATAGT chr5:125800515-125800615 - 13 1.00e-06 ACAACCCTGC CCCCAGAAACCCACA TAAATGAAGG chr9:120672425-120672525 + 13 1.00e-06 ACTCATGGGC ACACGCACATACACA TCCCACACCG chr13:97892444-97892544 + 10 1.20e-06 TTTCTCCTC CCTCACGTACACACC CTCTTTAATT chr2:31719843-31719943 - 65 1.44e-06 TCACACCCTA CCACACCCACCCAGA GAAGCACAGC chr4:152226940-152227040 + 63 2.23e-06 GCAAGCATAG GCACACGCACACAGG TTAGTTACCA chr8:90759512-90759612 - 9 2.42e-06 TTGAGCGACT CCAAACAAACACATA ATCTTCCC chr9:97975046-97975146 - 71 2.63e-06 GAGATGTAGC ACCCGCTTACACACA AGCCTCGGGA chr5:72422689-72422789 + 61 3.09e-06 CTGTATGCAA CCAAACACTCCCAGA TCCCAGGTTT chr5:63689969-63690069 + 17 3.33e-06 tatgccaggg cctagcaaacacaga agtggatgat chr15:15888785-15888885 - 31 3.33e-06 TATGCGGGGG CCTAGCAAACACAGA AGTGGATGCT chr2:13296812-13296912 - 64 3.33e-06 TTTACATCCT CCAAAGGCACACACT TGCATTTCCA chr8:36368402-36368502 + 25 3.33e-06 atttccaggg cctagcaaacacaga agtggatgct chr10:59539358-59539458 + 23 3.90e-06 CAGCTCTCGC CCACGCACACCTACG GCCAGGCTTT chr5:37551593-37551693 + 45 5.25e-06 CCACGTTGCA GCACACGTTCCCACA GTGTTCTTGG chr1:144498090-144498190 - 23 9.19e-06 TTTCTGCTGT GCCCGGAAACACACC CCTCCACCCT chr12:88831973-88832073 - 47 1.05e-05 TTGGTTCTGC ACACTGACACCCACG CAAATCTTCC chr4:153191497-153191597 + 76 1.35e-05 TCAGCGACAC CCAGAGACTCATACA GCAGGGAGAA chr3:117438682-117438782 + 27 1.35e-05 TCCTGCAGAT ACACGGTTACCCACC ATAGTTTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACAYACACACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:107931314-10793141 1.7e-09 1_[+4]_84 chr10:90778024-90778124 1.7e-09 6_[-4]_79 chr15:30451199-30451299 1.7e-09 30_[-4]_55 chr4:49285840-49285940 1.7e-09 48_[+4]_37 chr2:66214285-66214385 1.7e-09 79_[+4]_6 chr7:143294947-143295047 3.3e-09 19_[+4]_66 chr17:10251975-10252075 1.1e-07 13_[+4]_72 chr6:49633406-49633506 2e-07 [-4]_85 chr6:99339061-99339161 2.9e-07 69_[+4]_16 chr11:107506211-10750631 2.9e-07 [+4]_85 chr18:77432595-77432695 3.6e-07 84_[-4]_1 chr12:82147074-82147174 7.4e-07 67_[+4]_18 chr18:6191002-6191102 1e-06 74_[-4]_11 chr5:125800515-125800615 1e-06 12_[-4]_73 chr9:120672425-120672525 1e-06 12_[+4]_73 chr13:97892444-97892544 1.2e-06 9_[+4]_76 chr2:31719843-31719943 1.4e-06 64_[-4]_21 chr4:152226940-152227040 2.2e-06 62_[+4]_23 chr8:90759512-90759612 2.4e-06 8_[-4]_77 chr9:97975046-97975146 2.6e-06 70_[-4]_15 chr5:72422689-72422789 3.1e-06 60_[+4]_25 chr5:63689969-63690069 3.3e-06 16_[+4]_69 chr15:15888785-15888885 3.3e-06 30_[-4]_55 chr2:13296812-13296912 3.3e-06 63_[-4]_22 chr8:36368402-36368502 3.3e-06 24_[+4]_61 chr10:59539358-59539458 3.9e-06 22_[+4]_63 chr5:37551593-37551693 5.3e-06 44_[+4]_41 chr1:144498090-144498190 9.2e-06 22_[-4]_63 chr12:88831973-88832073 1e-05 46_[-4]_39 chr4:153191497-153191597 1.3e-05 75_[+4]_10 chr3:117438682-117438782 1.3e-05 26_[+4]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACAYACACACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCACACAYACACACA width=15 seqs=31 chr12:107931314-10793141 ( 2) ACACACACACACACA 1 chr10:90778024-90778124 ( 7) ACACACACACACACA 1 chr15:30451199-30451299 ( 31) ACACACACACACACA 1 chr4:49285840-49285940 ( 49) ACACACACACACACA 1 chr2:66214285-66214385 ( 80) ACACACACACACACA 1 chr7:143294947-143295047 ( 20) CCACACATACACACA 1 chr17:10251975-10252075 ( 14) ACAGACATACACACA 1 chr6:49633406-49633506 ( 1) CCACACACAGACACA 1 chr6:99339061-99339161 ( 70) CCACAGACACACACT 1 chr11:107506211-10750631 ( 1) TCACACATACACACA 1 chr18:77432595-77432695 ( 85) ACCCACGTACACACA 1 chr12:82147074-82147174 ( 68) CCAGGCAAACACAGA 1 chr18:6191002-6191102 ( 75) CCAGACGTACACACC 1 chr5:125800515-125800615 ( 13) CCCCAGAAACCCACA 1 chr9:120672425-120672525 ( 13) ACACGCACATACACA 1 chr13:97892444-97892544 ( 10) CCTCACGTACACACC 1 chr2:31719843-31719943 ( 65) CCACACCCACCCAGA 1 chr4:152226940-152227040 ( 63) GCACACGCACACAGG 1 chr8:90759512-90759612 ( 9) CCAAACAAACACATA 1 chr9:97975046-97975146 ( 71) ACCCGCTTACACACA 1 chr5:72422689-72422789 ( 61) CCAAACACTCCCAGA 1 chr5:63689969-63690069 ( 17) CCTAGCAAACACAGA 1 chr15:15888785-15888885 ( 31) CCTAGCAAACACAGA 1 chr2:13296812-13296912 ( 64) CCAAAGGCACACACT 1 chr8:36368402-36368502 ( 25) CCTAGCAAACACAGA 1 chr10:59539358-59539458 ( 23) CCACGCACACCTACG 1 chr5:37551593-37551693 ( 45) GCACACGTTCCCACA 1 chr1:144498090-144498190 ( 23) GCCCGGAAACACACC 1 chr12:88831973-88832073 ( 47) ACACTGACACCCACG 1 chr4:153191497-153191597 ( 76) CCAGAGACTCATACA 1 chr3:117438682-117438782 ( 27) ACACGGTTACCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACAYACACACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.9994 E= 1.2e-009 36 121 -120 -310 -1160 216 -1160 -1160 142 -79 -1160 -110 -52 160 -79 -1160 129 -1160 38 -310 -1160 180 2 -1160 136 -279 -20 -210 -29 112 -1160 7 170 -1160 -1160 -152 -1160 207 -279 -310 148 2 -1160 -1160 -1160 207 -1160 -210 185 -1160 -1160 -1160 -1160 173 2 -310 136 -79 -120 -210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACAYACACACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 31 E= 1.2e-009 0.354839 0.516129 0.096774 0.032258 0.000000 1.000000 0.000000 0.000000 0.741935 0.129032 0.000000 0.129032 0.193548 0.677419 0.129032 0.000000 0.677419 0.000000 0.290323 0.032258 0.000000 0.774194 0.225806 0.000000 0.709677 0.032258 0.193548 0.064516 0.225806 0.483871 0.000000 0.290323 0.903226 0.000000 0.000000 0.096774 0.000000 0.935484 0.032258 0.032258 0.774194 0.225806 0.000000 0.000000 0.000000 0.935484 0.000000 0.064516 1.000000 0.000000 0.000000 0.000000 0.000000 0.741935 0.225806 0.032258 0.709677 0.129032 0.096774 0.064516 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACAYACACACA MEME-4 regular expression -------------------------------------------------------------------------------- [CA]CAC[AG][CG]A[CTA]AC[AC]CA[CG]A -------------------------------------------------------------------------------- Time 1878.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGGCAGMWG MEME-5 width = 11 sites = 70 llr = 627 E-value = 1.0e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGGCAGMWG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:712:7:44: pos.-specific C :9:1:8:24:1 probability G 91188218219 matrix T ::2:::1::4: bits 2.2 1.9 1.7 ** * 1.5 ** * * Relative 1.3 ** *** * * Entropy 1.1 ** *** * * (12.9 bits) 0.9 ** ***** * 0.6 ******** * 0.4 ********* * 0.2 *********** 0.0 ----------- Multilevel GCAGGCAGCTG consensus T AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAGMWG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr13:11338159-11338259 - 27 2.60e-07 TTGGCAAGCA GCAGGCAGCAG ATCTCAGGAG chr18:37877057-37877157 + 31 2.60e-07 TGCTCAGAAT GCAGGCAGCAG CCTGCAGCAA chr10:68464841-68464941 + 48 5.83e-07 TTTCCCAAGG GCAGGCAGATG AATCTTTGAG chr6:97758100-97758200 + 18 1.21e-06 ACAGCTGGCA GCTGGCAGCTG CTTGTCTAGG chr16:91761135-91761235 + 17 1.34e-06 ctggcagtgt gcaggcagagg caggtggggc chr17:58407742-58407842 + 5 1.60e-06 ATCT GCAGGGAGCTG AGTTCTCAAC chr6:6544188-6544288 + 38 1.92e-06 CTGCCTGGAT GCTGGCAGATG GAACAGAAAC chr4:138555454-138555554 + 12 3.08e-06 CATCCCAGGG GCAGGCGGCTG CGCTTCCCTG chr11:59885473-59885573 - 8 3.08e-06 CCACTCAAAC GCAGGCAGGGG TAAATCA chr13:117383790-11738389 + 40 3.08e-06 TATTTTCCTC GCAGGCACCAG GATAGAATAA chr10:59539358-59539458 + 82 3.08e-06 TCTGAACCTA GCAGGCTGCTG CTCCGCCT chr10:88407030-88407130 + 75 3.08e-06 GACTAGGAAG GCAGGCTGCAG ATGCCTAGTT chr2:167129134-167129234 - 6 3.08e-06 AGCAGTGACT GCAGACAGCTG GAAGC chr12:54833897-54833997 + 51 3.61e-06 AGAGGCACGG GCAGGGAGAAG CAATCCCAGA chr5:80508613-80508713 - 8 3.61e-06 AGCTTACAGA GCAGGGAGAAG GACCCCA chr13:91955113-91955213 - 82 3.97e-06 TTGAAACT GCTGGCAGGAG TCACATGTTG chr9:95151596-95151696 - 87 5.28e-06 TCT GCAGACAGAAG ACAAGTTGAT chr1:52578404-52578504 - 27 5.28e-06 ACAACAGCAG GCAGGCACATG CAGGGCAGAC chr16:7106357-7106457 + 30 5.28e-06 AAGAAGCAAG GCAGACAGATG GTGTCCCGCA chr18:50400058-50400158 - 50 5.28e-06 ATTACAATGA GCAGACAGATG TGCTAAAGGC chr1:35258631-35258731 - 66 8.95e-06 GCAGCAGCTT GCAGGCAGCTC ACAGCCCCAG chr1:72455874-72455974 - 41 1.00e-05 GTGTAATGAA GCAGGGAGAGG AGACAGGGCT chr18:69898868-69898968 + 74 1.12e-05 CTTCATAGTT GCTGACAGCTG GAAACTAAGG chr15:4973287-4973387 + 1 1.12e-05 . gctggctgctg taccagatgt chr5:52036580-52036680 + 9 1.33e-05 TCATTGTA GCAGGCAGATC CAGGGAGCCC chr3:31436275-31436375 - 31 1.33e-05 TACAGTGAGA ACAGGCAGCAG GATCAGTGTT chr12:26680164-26680264 + 21 1.33e-05 TCTGGGAGAC GCTGGGAGATG TGCTTGGAGC chr11:33789516-33789616 - 66 1.59e-05 TCACCAGTGT GGAGGCAGGAG TGAGCCTCTG chr15:31422793-31422893 - 84 1.59e-05 GGATTT GCAAGCAGAAG TGCATCCAGG chr4:15090706-15090806 - 88 1.59e-05 AA GCAGAGAGCAG GCCGAGCTAA chr8:14447257-14447357 + 87 1.59e-05 GTATCTCTAG GCAGAGAGCAG GGA chr6:37216341-37216441 - 79 1.74e-05 ACAACAAGCT GCTGGCGGAAG ACTGGGGTTT chr3:81735421-81735521 - 21 1.93e-05 ATTGCCAGTA GCAGACACCTG CAGTGAAGTT chr5:27291304-27291404 - 84 1.93e-05 AGCCTG GCAGGCAGGCG AGAGCTGCAG chr4:65477080-65477180 - 42 1.93e-05 AAGCGCAGGC GCAGGCACGGG CTCCAGCTCT chr19:17488445-17488545 + 18 2.19e-05 TCATGCAGAC ACAGGCAGAAG CCATAGCAAC chr10:40760917-40761017 - 57 2.19e-05 TCCCCATCCA GGTGGCAGCAG AGCCCCAGGC chr4:59388675-59388775 + 62 2.19e-05 GATTCTGAAT GGTGGCAGCAG AGGACCTTGA chr16:72030274-72030374 - 66 2.43e-05 GATTCATGTA GCAGGAAGATG TGCATAGAGA chr13:57522239-57522339 + 81 2.61e-05 GGTGCCCAGA GCTGGCTGGTG CCCTGTGCC chr10:87094206-87094306 - 45 2.87e-05 AGTTAGCTTT GCAGACTGAAG GCTGGGGAGG chr4:148667914-148668014 + 73 2.87e-05 GGAGCGCCAG GCAGGCTCATG GAATACAGTC chr10:26703141-26703241 - 85 3.60e-05 AGGGA GCAGGGGGGAG TTATCGAAGA chr15:36374776-36374876 - 8 3.60e-05 GTGGCTCCAG GGAGGCTGCTG CAGAGAA chr13:99366396-99366496 + 33 3.60e-05 AGGCTGCTTT GGAGACAGCTG AAGGGACATA chr15:78078754-78078854 - 25 3.60e-05 AGTTCCACTG GCAGGGAGCCG AAGTGAGTGA chr6:75340990-75341090 + 50 3.60e-05 TTGTTTAATA GGAGACAGCTG ATGAAGTCAA chr8:124193861-124193961 + 3 3.60e-05 AA GCAAGCAGAGG CTCAGCTTCC chr13:46571051-46571151 + 4 3.82e-05 GAT GCGGGGAGGAG GCTGATCCAA chr17:70629838-70629938 + 23 3.82e-05 AAACTCTAAC GCTGGCAGTTG CTGCAGCAAT chr3:125576531-125576631 - 28 3.82e-05 TGCTCCAGTT GCAGCCAGCTG AGGATTTCAA chr4:33663875-33663975 + 48 4.22e-05 TAAGCAGAGC GCTGGCAGAAC TGTTGGTGTC chr11:40482453-40482553 + 40 4.74e-05 aacagcctca gctcgcaggtg cagatggagg chr13:110649830-11064993 - 32 5.28e-05 AGGTTACCAT GGAGACAGAAG CAAAGACACC chr4:152226940-152227040 + 31 5.28e-05 TGTGCAGTAC GCACGCACATG CGCATGCACA chr14:24827550-24827650 + 78 6.72e-05 TCCTCCTGTG ACAGGCACCAG GCAATTCTGG chr18:66653739-66653839 - 54 7.58e-05 GCCTGGGAGG ACGGGCAGCTG AGCAGGAGTT chr3:97255329-97255429 + 74 7.58e-05 GGGCACAGAG GCAAGCGGATG AATAAGCGGT chrX:93911164-93911264 + 15 8.19e-05 CTCTGGGATT GCAGGGAGCGC GAACCTGGAG chr8:35865591-35865691 + 17 9.47e-05 CGATTGTACC GCTGGAAGGTG GGGAACTGGC chr9:83326014-83326114 - 25 9.47e-05 ACAGCTTGAG GCTGGGGGCGG TGTTCCTACT chr12:54017218-54017318 + 73 1.11e-04 GCTCAAAGTA GCGAGCAGCGG ATGCTCAGGC chr16:33426843-33426943 + 25 1.28e-04 TCTCTCTCCC GCAGGCACAGC TCCCTAGTTT chr9:46795429-46795529 - 41 1.39e-04 GGTGCCTCGG GCAGGATGCGG TGCTTTCCAG chr6:100558068-100558168 + 47 1.76e-04 CCTGGTTGGC GCGGACTGGAG ATGATCCCAT chr6:31216593-31216693 + 82 2.70e-04 CGCCCCGGGC GCGCGCGGGAG GGGGTAGA chr1:168363180-168363280 + 4 3.22e-04 GTC GCACGCACTAG CTAGTTCAGT chr18:57388257-57388357 + 18 3.91e-04 GGGGATCTGT GCGCGGTGCAG AGCCATTCTG chr10:111582949-11158304 + 49 5.59e-04 AATGCCTTGC GCGCGCGCATG ATAAGAACTG chr13:107888959-10788905 - 23 6.24e-04 CCCCGGACGG GCTAGCGCGAG TGGGAAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAGMWG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:11338159-11338259 2.6e-07 26_[-5]_63 chr18:37877057-37877157 2.6e-07 30_[+5]_59 chr10:68464841-68464941 5.8e-07 47_[+5]_42 chr6:97758100-97758200 1.2e-06 17_[+5]_72 chr16:91761135-91761235 1.3e-06 16_[+5]_73 chr17:58407742-58407842 1.6e-06 4_[+5]_85 chr6:6544188-6544288 1.9e-06 37_[+5]_52 chr4:138555454-138555554 3.1e-06 11_[+5]_78 chr11:59885473-59885573 3.1e-06 7_[-5]_82 chr13:117383790-11738389 3.1e-06 39_[+5]_50 chr10:59539358-59539458 3.1e-06 81_[+5]_8 chr10:88407030-88407130 3.1e-06 74_[+5]_15 chr2:167129134-167129234 3.1e-06 5_[-5]_84 chr12:54833897-54833997 3.6e-06 50_[+5]_39 chr5:80508613-80508713 3.6e-06 7_[-5]_82 chr13:91955113-91955213 4e-06 81_[-5]_8 chr9:95151596-95151696 5.3e-06 86_[-5]_3 chr1:52578404-52578504 5.3e-06 26_[-5]_63 chr16:7106357-7106457 5.3e-06 29_[+5]_60 chr18:50400058-50400158 5.3e-06 49_[-5]_40 chr1:35258631-35258731 8.9e-06 65_[-5]_24 chr1:72455874-72455974 1e-05 40_[-5]_49 chr18:69898868-69898968 1.1e-05 73_[+5]_16 chr15:4973287-4973387 1.1e-05 [+5]_89 chr5:52036580-52036680 1.3e-05 8_[+5]_81 chr3:31436275-31436375 1.3e-05 30_[-5]_59 chr12:26680164-26680264 1.3e-05 20_[+5]_69 chr11:33789516-33789616 1.6e-05 65_[-5]_24 chr15:31422793-31422893 1.6e-05 83_[-5]_6 chr4:15090706-15090806 1.6e-05 87_[-5]_2 chr8:14447257-14447357 1.6e-05 86_[+5]_3 chr6:37216341-37216441 1.7e-05 78_[-5]_11 chr3:81735421-81735521 1.9e-05 20_[-5]_69 chr5:27291304-27291404 1.9e-05 83_[-5]_6 chr4:65477080-65477180 1.9e-05 41_[-5]_48 chr19:17488445-17488545 2.2e-05 17_[+5]_72 chr10:40760917-40761017 2.2e-05 56_[-5]_33 chr4:59388675-59388775 2.2e-05 61_[+5]_28 chr16:72030274-72030374 2.4e-05 65_[-5]_24 chr13:57522239-57522339 2.6e-05 80_[+5]_9 chr10:87094206-87094306 2.9e-05 44_[-5]_45 chr4:148667914-148668014 2.9e-05 72_[+5]_17 chr10:26703141-26703241 3.6e-05 84_[-5]_5 chr15:36374776-36374876 3.6e-05 7_[-5]_82 chr13:99366396-99366496 3.6e-05 32_[+5]_57 chr15:78078754-78078854 3.6e-05 24_[-5]_65 chr6:75340990-75341090 3.6e-05 49_[+5]_40 chr8:124193861-124193961 3.6e-05 2_[+5]_87 chr13:46571051-46571151 3.8e-05 3_[+5]_86 chr17:70629838-70629938 3.8e-05 22_[+5]_67 chr3:125576531-125576631 3.8e-05 27_[-5]_62 chr4:33663875-33663975 4.2e-05 47_[+5]_42 chr11:40482453-40482553 4.7e-05 39_[+5]_50 chr13:110649830-11064993 5.3e-05 31_[-5]_58 chr4:152226940-152227040 5.3e-05 30_[+5]_59 chr14:24827550-24827650 6.7e-05 77_[+5]_12 chr18:66653739-66653839 7.6e-05 53_[-5]_36 chr3:97255329-97255429 7.6e-05 73_[+5]_16 chrX:93911164-93911264 8.2e-05 14_[+5]_75 chr8:35865591-35865691 9.5e-05 16_[+5]_73 chr9:83326014-83326114 9.5e-05 24_[-5]_65 chr12:54017218-54017318 0.00011 72_[+5]_17 chr16:33426843-33426943 0.00013 24_[+5]_65 chr9:46795429-46795529 0.00014 40_[-5]_49 chr6:100558068-100558168 0.00018 46_[+5]_43 chr6:31216593-31216693 0.00027 81_[+5]_8 chr1:168363180-168363280 0.00032 3_[+5]_86 chr18:57388257-57388357 0.00039 17_[+5]_72 chr10:111582949-11158304 0.00056 48_[+5]_41 chr13:107888959-10788905 0.00062 22_[-5]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAGMWG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGGCAGMWG width=11 seqs=70 chr13:11338159-11338259 ( 27) GCAGGCAGCAG 1 chr18:37877057-37877157 ( 31) GCAGGCAGCAG 1 chr10:68464841-68464941 ( 48) GCAGGCAGATG 1 chr6:97758100-97758200 ( 18) GCTGGCAGCTG 1 chr16:91761135-91761235 ( 17) GCAGGCAGAGG 1 chr17:58407742-58407842 ( 5) GCAGGGAGCTG 1 chr6:6544188-6544288 ( 38) GCTGGCAGATG 1 chr4:138555454-138555554 ( 12) GCAGGCGGCTG 1 chr11:59885473-59885573 ( 8) GCAGGCAGGGG 1 chr13:117383790-11738389 ( 40) GCAGGCACCAG 1 chr10:59539358-59539458 ( 82) GCAGGCTGCTG 1 chr10:88407030-88407130 ( 75) GCAGGCTGCAG 1 chr2:167129134-167129234 ( 6) GCAGACAGCTG 1 chr12:54833897-54833997 ( 51) GCAGGGAGAAG 1 chr5:80508613-80508713 ( 8) GCAGGGAGAAG 1 chr13:91955113-91955213 ( 82) GCTGGCAGGAG 1 chr9:95151596-95151696 ( 87) GCAGACAGAAG 1 chr1:52578404-52578504 ( 27) GCAGGCACATG 1 chr16:7106357-7106457 ( 30) GCAGACAGATG 1 chr18:50400058-50400158 ( 50) GCAGACAGATG 1 chr1:35258631-35258731 ( 66) GCAGGCAGCTC 1 chr1:72455874-72455974 ( 41) GCAGGGAGAGG 1 chr18:69898868-69898968 ( 74) GCTGACAGCTG 1 chr15:4973287-4973387 ( 1) GCTGGCTGCTG 1 chr5:52036580-52036680 ( 9) GCAGGCAGATC 1 chr3:31436275-31436375 ( 31) ACAGGCAGCAG 1 chr12:26680164-26680264 ( 21) GCTGGGAGATG 1 chr11:33789516-33789616 ( 66) GGAGGCAGGAG 1 chr15:31422793-31422893 ( 84) GCAAGCAGAAG 1 chr4:15090706-15090806 ( 88) GCAGAGAGCAG 1 chr8:14447257-14447357 ( 87) GCAGAGAGCAG 1 chr6:37216341-37216441 ( 79) GCTGGCGGAAG 1 chr3:81735421-81735521 ( 21) GCAGACACCTG 1 chr5:27291304-27291404 ( 84) GCAGGCAGGCG 1 chr4:65477080-65477180 ( 42) GCAGGCACGGG 1 chr19:17488445-17488545 ( 18) ACAGGCAGAAG 1 chr10:40760917-40761017 ( 57) GGTGGCAGCAG 1 chr4:59388675-59388775 ( 62) GGTGGCAGCAG 1 chr16:72030274-72030374 ( 66) GCAGGAAGATG 1 chr13:57522239-57522339 ( 81) GCTGGCTGGTG 1 chr10:87094206-87094306 ( 45) GCAGACTGAAG 1 chr4:148667914-148668014 ( 73) GCAGGCTCATG 1 chr10:26703141-26703241 ( 85) GCAGGGGGGAG 1 chr15:36374776-36374876 ( 8) GGAGGCTGCTG 1 chr13:99366396-99366496 ( 33) GGAGACAGCTG 1 chr15:78078754-78078854 ( 25) GCAGGGAGCCG 1 chr6:75340990-75341090 ( 50) GGAGACAGCTG 1 chr8:124193861-124193961 ( 3) GCAAGCAGAGG 1 chr13:46571051-46571151 ( 4) GCGGGGAGGAG 1 chr17:70629838-70629938 ( 23) GCTGGCAGTTG 1 chr3:125576531-125576631 ( 28) GCAGCCAGCTG 1 chr4:33663875-33663975 ( 48) GCTGGCAGAAC 1 chr11:40482453-40482553 ( 40) GCTCGCAGGTG 1 chr13:110649830-11064993 ( 32) GGAGACAGAAG 1 chr4:152226940-152227040 ( 31) GCACGCACATG 1 chr14:24827550-24827650 ( 78) ACAGGCACCAG 1 chr18:66653739-66653839 ( 54) ACGGGCAGCTG 1 chr3:97255329-97255429 ( 74) GCAAGCGGATG 1 chrX:93911164-93911264 ( 15) GCAGGGAGCGC 1 chr8:35865591-35865691 ( 17) GCTGGAAGGTG 1 chr9:83326014-83326114 ( 25) GCTGGGGGCGG 1 chr12:54017218-54017318 ( 73) GCGAGCAGCGG 1 chr16:33426843-33426943 ( 25) GCAGGCACAGC 1 chr9:46795429-46795529 ( 41) GCAGGATGCGG 1 chr6:100558068-100558168 ( 47) GCGGACTGGAG 1 chr6:31216593-31216693 ( 82) GCGCGCGGGAG 1 chr1:168363180-168363280 ( 4) GCACGCACTAG 1 chr18:57388257-57388357 ( 18) GCGCGGTGCAG 1 chr10:111582949-11158304 ( 49) GCGCGCGCATG 1 chr13:107888959-10788905 ( 23) GCTAGCGCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAGMWG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 10.4122 E= 1.0e+006 -228 -1277 208 -1277 -1277 201 -116 -1277 128 -1277 -116 -28 -195 -138 192 -1277 -58 -396 184 -1277 -269 179 -26 -1277 142 -1277 -96 -96 -1277 -50 192 -1277 37 94 -26 -328 53 -296 -64 63 -1277 -164 206 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAGMWG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 70 E= 1.0e+006 0.057143 0.000000 0.942857 0.000000 0.000000 0.900000 0.100000 0.000000 0.671429 0.000000 0.100000 0.228571 0.071429 0.085714 0.842857 0.000000 0.185714 0.014286 0.800000 0.000000 0.042857 0.771429 0.185714 0.000000 0.742857 0.000000 0.114286 0.142857 0.000000 0.157143 0.842857 0.000000 0.357143 0.428571 0.185714 0.028571 0.400000 0.028571 0.142857 0.428571 0.000000 0.071429 0.928571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGCAGMWG MEME-5 regular expression -------------------------------------------------------------------------------- GC[AT]GGCAG[CA][TA]G -------------------------------------------------------------------------------- Time 2312.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGAGCHSAGM MEME-6 width = 11 sites = 50 llr = 498 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGAGCHSAGM MEME-6 Description -------------------------------------------------------------------------------- Simplified A :4:7::419:3 pos.-specific C a:31:a251:7 probability G :17:a:14:a: matrix T :5:2::2:::: bits 2.2 ** * 1.9 * ** * 1.7 * ** * 1.5 * ** ** Relative 1.3 * * ** ** Entropy 1.1 * * ** *** (14.4 bits) 0.9 * * ** *** 0.6 * **** **** 0.4 ****** **** 0.2 *********** 0.0 ----------- Multilevel CTGAGCACAGC consensus AC TG A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAGCHSAGM MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr4:89776262-89776362 + 17 3.23e-07 CAATTAGTCT CTGAGCACAGC TTGCTCTCCA chr11:33789516-33789616 - 21 3.23e-07 AGAGTGAGTC CTGAGCACAGC AGCTCCACTG chr5:27291304-27291404 + 47 3.23e-07 GGTTCTACCC CAGAGCACAGC AGCCGAGCAT chr7:89797724-89797824 - 79 3.23e-07 AAATGGGCAC CAGAGCACAGC TGAGCTCTAA chr17:73560380-73560480 + 80 1.23e-06 TTGAGCTGAG CTGAGCTCAGC GAAATACATA chr9:29832821-29832921 - 84 2.54e-06 TCTAGG CTGAGCTGAGC CTGAAAGGAA chr1:62578106-62578206 - 63 2.54e-06 CGGTGACAAA CAGAGCTGAGC AGTGTCGCAC chr8:81638721-81638821 + 50 2.86e-06 CCATAGCATA CACAGCAGAGC TAGAATAGCA chr18:30051644-30051744 + 87 4.23e-06 AGAGCTATCC CGGAGCACAGC TGG chrX:93068832-93068932 + 54 4.23e-06 GCTCGCTTAA CTCAGCCCAGC ACACAGGGCT chr14:64127245-64127345 + 38 4.23e-06 GACAGATGGC CTCAGCCCAGC CGCACCTGTG chr11:82484225-82484325 - 64 5.14e-06 CATACTCAGG CTGAGCCCAGA GCGATGAACA chr17:80982329-80982429 + 22 5.14e-06 TTCGTCCTTT CTGAGCCCAGA AAGCAAGGTT chr18:32201801-32201901 - 66 5.14e-06 AAATGCTGCT CAGCGCACAGC ACAGGGTGAG chr2:31719843-31719943 - 50 5.14e-06 CCCAGAGAAG CACAGCTCAGC CAGAACAGGG chr8:17148604-17148704 + 15 5.14e-06 CTCTTTCTTC CTGAGCCCAGA AATAGCCCAT chr7:72195628-72195728 + 84 5.14e-06 gtgctggaga ctgagcccaga gcttca chr2:123696395-123696495 + 14 5.14e-06 ACCAGAAGCT CTCAGCTCAGC AGATTGCATC chr8:124193861-124193961 + 49 5.14e-06 TCCTGCCTGG CAGAGCCCAGA GAGAAGCTGG chr1:167938207-167938307 - 24 6.91e-06 GCTAGTCTCC CAGTGCAGAGC AGACAGAGTG chr15:66174166-66174266 + 56 6.91e-06 CCTTTCTCCT CAGTGCAGAGC TGTGGGCTCC chr11:112458016-11245811 - 78 8.22e-06 CAAAAGAAGT CAGAGCCGAGA AAATCTGATC chr13:6374762-6374862 + 19 8.22e-06 ATCTGATGCC CTCAGCTGAGC CTGCTGTGGA chr15:73311762-73311862 + 63 8.22e-06 ttccaccatc ctcagcacaga gtgccaaggc chr10:24630641-24630741 + 43 8.22e-06 AACAATTCCT CAGCGCAGAGC GACCGCTGTT chr12:89159378-89159478 - 64 9.65e-06 CTTCCCTCCC CAGTGCTCAGC ATGTACGCTG chr13:97461194-97461294 - 70 1.09e-05 TCTGGTCACA CTCAGCAGAGA ACTGATGAGC chr15:74052930-74053030 - 28 1.09e-05 CCCAAATCCC CAGCGCTCAGC AAAATTCCCC chr15:30785653-30785753 - 54 1.24e-05 TGCACAGCTG CACTGCACAGC TGCACTGCAC chr15:62908231-62908331 + 77 1.24e-05 ACGGTGACTT CTGAGCTAAGC ACCCCTTCCC chr13:99391392-99391492 + 9 1.45e-05 ATGACTCA CACCGCACAGC ACAGGCCTTG chr16:46604941-46605041 - 74 1.45e-05 TTAAATCCTC CTGTGCACAGA CTCTGTAAGC chr2:50902176-50902276 - 10 1.45e-05 CGCAGCTGAA CACAGCCCAGA TTCAAAACC chr1:24302649-24302749 - 34 1.61e-05 GGAGGCTGTG CAGAGCAGCGC GGCCTCTCTC chr11:111273555-11127365 + 65 1.61e-05 ATCTCAATTG CACAGCAAAGC TGCCTGAAGC chr5:41973280-41973380 - 44 2.51e-05 TCAGCTTGGA CTGTGCAAAGC AGCAAGTTAT chr9:77469757-77469857 - 65 2.80e-05 ATGGAGCAAG CGGAGCGGAGC GAGCATCGGA chr13:107888959-10788905 - 78 2.80e-05 GGACGGTCCC CGGAGCGGAGC GCCCATTTCC chr11:18751332-18751432 - 41 2.80e-05 TGCAGTGTTG CACAGCTAAGC ATCCTCTTGA chr16:6075275-6075375 + 52 3.08e-05 AGAAAACTCA CTGAGCTAAGA ATATGAAGGG chr10:54197693-54197793 + 39 3.25e-05 ctttgtctct cagtgctgaga ttacaaacat chr4:153191497-153191597 - 59 3.39e-05 CTGGGTGTCG CTGAGCAGCGA GTCACCAGGT chr11:42247090-42247190 - 59 3.61e-05 TACAATTAGA CACTGCAGAGA TTTTTTCTTT chr12:5202532-5202632 - 1 3.86e-05 CAATTTGTCC CTGAGCCCCGA chr13:10084124-10084224 - 84 4.41e-05 GTATTC CTGAGCGGCGC TGGCGCTGGA chr9:83326014-83326114 + 62 4.78e-05 AGCTTGGGAA CTCCGCAAAGC TAGCTGTGGG chr2:124512727-124512827 + 36 5.07e-05 AGCAGAAATA CGGTGCAGAGA TGCTTAGGAT chr4:103552451-103552551 - 62 6.72e-05 AAGCAGGAGA GAGAGCCCAGC GTATGCACTC chr9:95151596-95151696 + 22 8.88e-05 AGTTAACACC CTGCGCGAAGA AGAGGCAGAA chr6:127330128-127330228 + 39 1.25e-04 CCCATTGGAG CGGCGCGGCGC CTCTTGGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAGCHSAGM MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:89776262-89776362 3.2e-07 16_[+6]_73 chr11:33789516-33789616 3.2e-07 20_[-6]_69 chr5:27291304-27291404 3.2e-07 46_[+6]_43 chr7:89797724-89797824 3.2e-07 78_[-6]_11 chr17:73560380-73560480 1.2e-06 79_[+6]_10 chr9:29832821-29832921 2.5e-06 83_[-6]_6 chr1:62578106-62578206 2.5e-06 62_[-6]_27 chr8:81638721-81638821 2.9e-06 49_[+6]_40 chr18:30051644-30051744 4.2e-06 86_[+6]_3 chrX:93068832-93068932 4.2e-06 53_[+6]_36 chr14:64127245-64127345 4.2e-06 37_[+6]_52 chr11:82484225-82484325 5.1e-06 63_[-6]_26 chr17:80982329-80982429 5.1e-06 21_[+6]_68 chr18:32201801-32201901 5.1e-06 65_[-6]_24 chr2:31719843-31719943 5.1e-06 49_[-6]_40 chr8:17148604-17148704 5.1e-06 14_[+6]_75 chr7:72195628-72195728 5.1e-06 83_[+6]_6 chr2:123696395-123696495 5.1e-06 13_[+6]_76 chr8:124193861-124193961 5.1e-06 48_[+6]_41 chr1:167938207-167938307 6.9e-06 23_[-6]_66 chr15:66174166-66174266 6.9e-06 55_[+6]_34 chr11:112458016-11245811 8.2e-06 77_[-6]_12 chr13:6374762-6374862 8.2e-06 18_[+6]_71 chr15:73311762-73311862 8.2e-06 62_[+6]_27 chr10:24630641-24630741 8.2e-06 42_[+6]_47 chr12:89159378-89159478 9.6e-06 63_[-6]_26 chr13:97461194-97461294 1.1e-05 69_[-6]_20 chr15:74052930-74053030 1.1e-05 27_[-6]_62 chr15:30785653-30785753 1.2e-05 53_[-6]_36 chr15:62908231-62908331 1.2e-05 76_[+6]_13 chr13:99391392-99391492 1.5e-05 8_[+6]_81 chr16:46604941-46605041 1.5e-05 73_[-6]_16 chr2:50902176-50902276 1.5e-05 9_[-6]_80 chr1:24302649-24302749 1.6e-05 33_[-6]_56 chr11:111273555-11127365 1.6e-05 64_[+6]_25 chr5:41973280-41973380 2.5e-05 43_[-6]_46 chr9:77469757-77469857 2.8e-05 64_[-6]_25 chr13:107888959-10788905 2.8e-05 77_[-6]_12 chr11:18751332-18751432 2.8e-05 40_[-6]_49 chr16:6075275-6075375 3.1e-05 51_[+6]_38 chr10:54197693-54197793 3.3e-05 38_[+6]_51 chr4:153191497-153191597 3.4e-05 58_[-6]_31 chr11:42247090-42247190 3.6e-05 58_[-6]_31 chr12:5202532-5202632 3.9e-05 [-6]_89 chr13:10084124-10084224 4.4e-05 83_[-6]_6 chr9:83326014-83326114 4.8e-05 61_[+6]_28 chr2:124512727-124512827 5.1e-05 35_[+6]_54 chr4:103552451-103552551 6.7e-05 61_[-6]_28 chr9:95151596-95151696 8.9e-05 21_[+6]_68 chr6:127330128-127330228 0.00012 38_[+6]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAGCHSAGM MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGAGCHSAGM width=11 seqs=50 chr4:89776262-89776362 ( 17) CTGAGCACAGC 1 chr11:33789516-33789616 ( 21) CTGAGCACAGC 1 chr5:27291304-27291404 ( 47) CAGAGCACAGC 1 chr7:89797724-89797824 ( 79) CAGAGCACAGC 1 chr17:73560380-73560480 ( 80) CTGAGCTCAGC 1 chr9:29832821-29832921 ( 84) CTGAGCTGAGC 1 chr1:62578106-62578206 ( 63) CAGAGCTGAGC 1 chr8:81638721-81638821 ( 50) CACAGCAGAGC 1 chr18:30051644-30051744 ( 87) CGGAGCACAGC 1 chrX:93068832-93068932 ( 54) CTCAGCCCAGC 1 chr14:64127245-64127345 ( 38) CTCAGCCCAGC 1 chr11:82484225-82484325 ( 64) CTGAGCCCAGA 1 chr17:80982329-80982429 ( 22) CTGAGCCCAGA 1 chr18:32201801-32201901 ( 66) CAGCGCACAGC 1 chr2:31719843-31719943 ( 50) CACAGCTCAGC 1 chr8:17148604-17148704 ( 15) CTGAGCCCAGA 1 chr7:72195628-72195728 ( 84) CTGAGCCCAGA 1 chr2:123696395-123696495 ( 14) CTCAGCTCAGC 1 chr8:124193861-124193961 ( 49) CAGAGCCCAGA 1 chr1:167938207-167938307 ( 24) CAGTGCAGAGC 1 chr15:66174166-66174266 ( 56) CAGTGCAGAGC 1 chr11:112458016-11245811 ( 78) CAGAGCCGAGA 1 chr13:6374762-6374862 ( 19) CTCAGCTGAGC 1 chr15:73311762-73311862 ( 63) CTCAGCACAGA 1 chr10:24630641-24630741 ( 43) CAGCGCAGAGC 1 chr12:89159378-89159478 ( 64) CAGTGCTCAGC 1 chr13:97461194-97461294 ( 70) CTCAGCAGAGA 1 chr15:74052930-74053030 ( 28) CAGCGCTCAGC 1 chr15:30785653-30785753 ( 54) CACTGCACAGC 1 chr15:62908231-62908331 ( 77) CTGAGCTAAGC 1 chr13:99391392-99391492 ( 9) CACCGCACAGC 1 chr16:46604941-46605041 ( 74) CTGTGCACAGA 1 chr2:50902176-50902276 ( 10) CACAGCCCAGA 1 chr1:24302649-24302749 ( 34) CAGAGCAGCGC 1 chr11:111273555-11127365 ( 65) CACAGCAAAGC 1 chr5:41973280-41973380 ( 44) CTGTGCAAAGC 1 chr9:77469757-77469857 ( 65) CGGAGCGGAGC 1 chr13:107888959-10788905 ( 78) CGGAGCGGAGC 1 chr11:18751332-18751432 ( 41) CACAGCTAAGC 1 chr16:6075275-6075375 ( 52) CTGAGCTAAGA 1 chr10:54197693-54197793 ( 39) CAGTGCTGAGA 1 chr4:153191497-153191597 ( 59) CTGAGCAGCGA 1 chr11:42247090-42247190 ( 59) CACTGCAGAGA 1 chr12:5202532-5202632 ( 1) CTGAGCCCCGA 1 chr13:10084124-10084224 ( 84) CTGAGCGGCGC 1 chr9:83326014-83326114 ( 62) CTCCGCAAAGC 1 chr2:124512727-124512827 ( 36) CGGTGCAGAGA 1 chr4:103552451-103552551 ( 62) GAGAGCCCAGC 1 chr9:95151596-95151696 ( 22) CTGCGCGAAGA 1 chr6:127330128-127330228 ( 39) CGGCGCGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAGCHSAGM MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.2091 E= 2.5e-004 -1229 214 -348 -1229 67 -1229 -116 73 -1229 43 165 -1229 130 -67 -1229 -62 -1229 -1229 216 -1229 -1229 216 -1229 -1229 67 -2 -116 -21 -98 116 69 -1229 170 -116 -1229 -1229 -1229 -1229 216 -1229 30 157 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAGCHSAGM MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 50 E= 2.5e-004 0.000000 0.980000 0.020000 0.000000 0.440000 0.000000 0.100000 0.460000 0.000000 0.300000 0.700000 0.000000 0.680000 0.140000 0.000000 0.180000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.440000 0.220000 0.100000 0.240000 0.140000 0.500000 0.360000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.340000 0.660000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAGCHSAGM MEME-6 regular expression -------------------------------------------------------------------------------- C[TA][GC]AGC[ATC][CG]AG[CA] -------------------------------------------------------------------------------- Time 2734.46 secs. ******************************************************************************** ******************************************************************************** MOTIF YYCYTCTCTCTYTCY MEME-7 width = 15 sites = 21 llr = 263 E-value = 3.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYCYTCTCTCTYTCY MEME-7 Description -------------------------------------------------------------------------------- Simplified A ::::1:::::2:::: pos.-specific C 547629:a17251a3 probability G 1:1:::::13::::: matrix T 362471a:7:659:7 bits 2.2 * 1.9 ** * 1.7 *** * 1.5 *** ** Relative 1.3 *** * ** Entropy 1.1 * * *** * **** (18.1 bits) 0.9 ********* **** 0.6 ********** **** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CTCCTCTCTCTCTCT consensus TCTT GAT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYTCTCTCTYTCY MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr3:19424147-19424247 - 4 7.65e-10 CTCTCTCTCT CTCCTCTCTCTCTCT CCT chr18:56676469-56676569 + 33 1.62e-08 cctagccggc ctcttctctctttct ctcctctttc chr7:58787604-58787704 + 84 4.05e-08 CTGTTTTCTT CTCTTCTCTCTTTCC TT chr16:33426843-33426943 + 9 7.68e-08 CAGTCAGT GCCCTCTCTCTCTCC CGCAGGCACA chr15:54245202-54245302 - 60 1.03e-07 GAATCCCGTG TCTCTCTCTCTCTCT CTCTCTCTCT chr9:120363489-120363589 + 84 1.03e-07 tctctctctc tctctctctctctct ct chr11:33695032-33695132 + 42 1.03e-07 tctctctctg tctctctctctctct ctctctctct chr15:30451199-30451299 - 54 1.22e-07 GGAGTCTCTC TCCCTCTCTGTCTCC TCTGACACAC chr12:85563172-85563272 - 1 2.08e-07 ACATCAGAAA CTTCTCTCTCCTTCT chr14:24827550-24827650 + 28 2.37e-07 GCCACAGTTT CTCCTCTCCCATTCT GTCTGCTGTA chr11:57094797-57094897 + 6 6.44e-07 TTTCT TTCCCCTCCCTTTCT CAGCTTCCTG chr9:30134259-30134359 - 11 1.03e-06 GCAACCACCA CTCCACTCTGACTCT GTGAATTTGG chr5:132209807-132209907 - 73 1.22e-06 TCTTGCGTTC CCCTTTTCTCTTTCC ATTTCAGCCT chr13:46180414-46180514 - 31 1.34e-06 GATGCTCATG CTGTTCTCTGTCTCC ACTGTCCTCA chr18:80069007-80069107 + 60 3.04e-06 tcttagaaca tcctcctcgccttct tgcctgtgct chr10:23086537-23086637 - 28 3.25e-06 GCTTCCGTGG CTCCACTCGGACTCT ACAGAATTTT chr1:13614803-13614903 + 2 3.25e-06 T CTTCCCTCTCTTCCC CACAGTGTGC chr13:10024067-10024167 - 51 4.72e-06 ATCTGAGGCT GCCTTTTCTCCTTCT ATTCATTCCC chr16:7106357-7106457 + 74 5.30e-06 GCACTTTCAT CTCTCCTCTCACTAT TAATTCATCT chr10:119065365-11906546 - 83 9.21e-06 CAC GTGCTCTCCGCCTCC CCCGAGGACG chr6:89000427-89000527 + 59 9.66e-06 TTCCCCATTT TCCTTCTCGGATCCT TAGCTGCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYTCTCTCTYTCY MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:19424147-19424247 7.7e-10 3_[-7]_82 chr18:56676469-56676569 1.6e-08 32_[+7]_53 chr7:58787604-58787704 4e-08 83_[+7]_2 chr16:33426843-33426943 7.7e-08 8_[+7]_77 chr15:54245202-54245302 1e-07 59_[-7]_26 chr9:120363489-120363589 1e-07 83_[+7]_2 chr11:33695032-33695132 1e-07 41_[+7]_44 chr15:30451199-30451299 1.2e-07 53_[-7]_32 chr12:85563172-85563272 2.1e-07 [-7]_85 chr14:24827550-24827650 2.4e-07 27_[+7]_58 chr11:57094797-57094897 6.4e-07 5_[+7]_80 chr9:30134259-30134359 1e-06 10_[-7]_75 chr5:132209807-132209907 1.2e-06 72_[-7]_13 chr13:46180414-46180514 1.3e-06 30_[-7]_55 chr18:80069007-80069107 3e-06 59_[+7]_26 chr10:23086537-23086637 3.3e-06 27_[-7]_58 chr1:13614803-13614903 3.3e-06 1_[+7]_84 chr13:10024067-10024167 4.7e-06 50_[-7]_35 chr16:7106357-7106457 5.3e-06 73_[+7]_12 chr10:119065365-11906546 9.2e-06 82_[-7]_3 chr6:89000427-89000527 9.7e-06 58_[+7]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYTCTCTCTYTCY MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYCYTCTCTCTYTCY width=15 seqs=21 chr3:19424147-19424247 ( 4) CTCCTCTCTCTCTCT 1 chr18:56676469-56676569 ( 33) CTCTTCTCTCTTTCT 1 chr7:58787604-58787704 ( 84) CTCTTCTCTCTTTCC 1 chr16:33426843-33426943 ( 9) GCCCTCTCTCTCTCC 1 chr15:54245202-54245302 ( 60) TCTCTCTCTCTCTCT 1 chr9:120363489-120363589 ( 84) TCTCTCTCTCTCTCT 1 chr11:33695032-33695132 ( 42) TCTCTCTCTCTCTCT 1 chr15:30451199-30451299 ( 54) TCCCTCTCTGTCTCC 1 chr12:85563172-85563272 ( 1) CTTCTCTCTCCTTCT 1 chr14:24827550-24827650 ( 28) CTCCTCTCCCATTCT 1 chr11:57094797-57094897 ( 6) TTCCCCTCCCTTTCT 1 chr9:30134259-30134359 ( 11) CTCCACTCTGACTCT 1 chr5:132209807-132209907 ( 73) CCCTTTTCTCTTTCC 1 chr13:46180414-46180514 ( 31) CTGTTCTCTGTCTCC 1 chr18:80069007-80069107 ( 60) TCCTCCTCGCCTTCT 1 chr10:23086537-23086637 ( 28) CTCCACTCGGACTCT 1 chr1:13614803-13614903 ( 2) CTTCCCTCTCTTCCC 1 chr13:10024067-10024167 ( 51) GCCTTTTCTCCTTCT 1 chr16:7106357-7106457 ( 74) CTCTCCTCTCACTAT 1 chr10:119065365-11906546 ( 83) GTGCTCTCCGCCTCC 1 chr6:89000427-89000527 ( 59) TCCTTCTCGGATCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYTCTCTCTYTCY MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 12.2488 E= 3.4e+002 -1104 123 -64 27 -1104 94 -1104 104 -1104 158 -123 -22 -1104 147 -1104 46 -154 -23 -1104 137 -1104 202 -1104 -154 -1104 -1104 -1104 185 -1104 216 -1104 -1104 -1104 -64 -64 137 -1104 168 36 -1104 -22 -23 -1104 104 -1104 123 -1104 78 -1104 -123 -1104 171 -254 209 -1104 -1104 -1104 58 -1104 127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYTCTCTCTYTCY MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 21 E= 3.4e+002 0.000000 0.523810 0.142857 0.333333 0.000000 0.428571 0.000000 0.571429 0.000000 0.666667 0.095238 0.238095 0.000000 0.619048 0.000000 0.380952 0.095238 0.190476 0.000000 0.714286 0.000000 0.904762 0.000000 0.095238 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.142857 0.714286 0.000000 0.714286 0.285714 0.000000 0.238095 0.190476 0.000000 0.571429 0.000000 0.523810 0.000000 0.476190 0.000000 0.095238 0.000000 0.904762 0.047619 0.952381 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCYTCTCTCTYTCY MEME-7 regular expression -------------------------------------------------------------------------------- [CT][TC][CT][CT]TCTCT[CG][TA][CT]TC[TC] -------------------------------------------------------------------------------- Time 3149.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TCACAGTCAGCTATTGGATG MEME-8 width = 20 sites = 3 llr = 83 E-value = 4.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACAGTCAGCTATTGGATG MEME-8 Description -------------------------------------------------------------------------------- Simplified A ::a:a:::a:::a::::a:: pos.-specific C :a:a:::a::a::::::::: probability G :::::a:::a:::::aa::a matrix T a:::::a::::a:aa:::a: bits 2.2 * * * * ** ** * 1.9 ******************** 1.7 ******************** 1.5 ******************** Relative 1.3 ******************** Entropy 1.1 ******************** (39.9 bits) 0.9 ******************** 0.6 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel TCACAGTCAGCTATTGGATG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACAGTCAGCTATTGGATG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr5:63689969-63690069 + 41 1.00e-12 aagtggatga tcacagtcagctattggatg agtcacacgg chr15:15888785-15888885 - 2 1.00e-12 AAGTGGATGC TCACAGTCAGCTATTGGATG G chr8:36368402-36368502 + 49 1.00e-12 aagtggatgc tcacagtcagctattggatg gatcgcaggg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACAGTCAGCTATTGGATG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:63689969-63690069 1e-12 40_[+8]_40 chr15:15888785-15888885 1e-12 1_[-8]_79 chr8:36368402-36368502 1e-12 48_[+8]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACAGTCAGCTATTGGATG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACAGTCAGCTATTGGATG width=20 seqs=3 chr5:63689969-63690069 ( 41) TCACAGTCAGCTATTGGATG 1 chr15:15888785-15888885 ( 2) TCACAGTCAGCTATTGGATG 1 chr8:36368402-36368502 ( 49) TCACAGTCAGCTATTGGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACAGTCAGCTATTGGATG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 13.6426 E= 4.4e+003 -823 -823 -823 185 -823 216 -823 -823 185 -823 -823 -823 -823 216 -823 -823 185 -823 -823 -823 -823 -823 216 -823 -823 -823 -823 185 -823 216 -823 -823 185 -823 -823 -823 -823 -823 216 -823 -823 216 -823 -823 -823 -823 -823 185 185 -823 -823 -823 -823 -823 -823 185 -823 -823 -823 185 -823 -823 216 -823 -823 -823 216 -823 185 -823 -823 -823 -823 -823 -823 185 -823 -823 216 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACAGTCAGCTATTGGATG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 3 E= 4.4e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACAGTCAGCTATTGGATG MEME-8 regular expression -------------------------------------------------------------------------------- TCACAGTCAGCTATTGGATG -------------------------------------------------------------------------------- Time 3563.01 secs. ******************************************************************************** ******************************************************************************** MOTIF TRMNGARGMASCTGVHCACAYTSCAWCWS MEME-9 width = 29 sites = 7 llr = 162 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRMNGARGMASCTGVHCACAYTSCAWCWS MEME-9 Description -------------------------------------------------------------------------------- Simplified A :663:94:6a131:33:a:7:1::73:3: pos.-specific C :131:::13:37::437:734:4a1:a:4 probability G :31391691:6::a3:::::::6::1:16 matrix T a::31:::::::9::43:3:69::16:6: bits 2.2 * * * 1.9 * * * * * * 1.7 * * * * * * 1.5 * * * * * * * * Relative 1.3 * ** * * *** *** * * * Entropy 1.1 * **** * *** ******** * * (33.4 bits) 0.9 * **** * *** ******** * * 0.6 *** ********** ********* * * 0.4 *** ************************* 0.2 *** ************************* 0.0 ----------------------------- Multilevel TAAAGAGGAAGCTGCTCACATTGCATCTG consensus GCG A C CA AAT TCC C A AC sequence T GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRMNGARGMASCTGVHCACAYTSCAWCWS MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr1:123044144-123044244 + 37 1.56e-14 gcaccaggca taatgaggcacctgatcacattgcatctg cagtcaggaa chr7:76889712-76889812 - 14 1.41e-13 GAACAGCACC TCCAGAGGAAGCTGCTCACCCTCCATCTG TGCCTTGCAC chr9:40630997-40631097 - 70 2.45e-12 CT TGAGGAAGCAGATGGTCACATTGCTTCTG CAGGACCTTC chr3:147378654-147378754 - 8 4.98e-11 TTCTGCCGTG TAAGGAAGAAGCAGACCATCTTGCCACTC TTTAATA chr8:14447257-14447357 - 21 7.51e-11 GAGTCATGGT TGCCTAGCAACCTGCCCACACTCCATCAC AAATCTGCTA chr2:90504577-90504677 + 29 1.46e-10 AGTTACTATT TAGAGAGGAAACTGCATATATAGCAACAG CCTGAGCAGC chr9:46814663-46814763 - 37 2.34e-10 GGGGCCTTCC TAATGGAGGAGATGGATACACTCCAGCGC AACCCGCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRMNGARGMASCTGVHCACAYTSCAWCWS MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:123044144-123044244 1.6e-14 36_[+9]_35 chr7:76889712-76889812 1.4e-13 13_[-9]_58 chr9:40630997-40631097 2.5e-12 69_[-9]_2 chr3:147378654-147378754 5e-11 7_[-9]_64 chr8:14447257-14447357 7.5e-11 20_[-9]_51 chr2:90504577-90504677 1.5e-10 28_[+9]_43 chr9:46814663-46814763 2.3e-10 36_[-9]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRMNGARGMASCTGVHCACAYTSCAWCWS MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRMNGARGMASCTGVHCACAYTSCAWCWS width=29 seqs=7 chr1:123044144-123044244 ( 37) TAATGAGGCACCTGATCACATTGCATCTG 1 chr7:76889712-76889812 ( 14) TCCAGAGGAAGCTGCTCACCCTCCATCTG 1 chr9:40630997-40631097 ( 70) TGAGGAAGCAGATGGTCACATTGCTTCTG 1 chr3:147378654-147378754 ( 8) TAAGGAAGAAGCAGACCATCTTGCCACTC 1 chr8:14447257-14447357 ( 21) TGCCTAGCAACCTGCCCACACTCCATCAC 1 chr2:90504577-90504677 ( 29) TAGAGAGGAAACTGCATATATAGCAACAG 1 chr9:46814663-46814763 ( 37) TAATGGAGGAGATGGATACACTCCAGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRMNGARGMASCTGVHCACAYTSCAWCWS MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 13.197 E= 2.6e+004 -945 -945 -945 185 104 -64 36 -945 104 36 -64 -945 4 -64 36 4 -945 -945 194 -95 163 -945 -64 -945 63 -945 136 -945 -945 -64 194 -945 104 36 -64 -945 185 -945 -945 -945 -95 36 136 -945 4 168 -945 -945 -95 -945 -945 163 -945 -945 216 -945 4 94 36 -945 4 36 -945 63 -945 168 -945 4 185 -945 -945 -945 -945 168 -945 4 137 36 -945 -945 -945 94 -945 104 -95 -945 -945 163 -945 94 136 -945 -945 216 -945 -945 137 -64 -945 -95 4 -945 -64 104 -945 216 -945 -945 4 -945 -64 104 -945 94 136 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRMNGARGMASCTGVHCACAYTSCAWCWS MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 7 E= 2.6e+004 0.000000 0.000000 0.000000 1.000000 0.571429 0.142857 0.285714 0.000000 0.571429 0.285714 0.142857 0.000000 0.285714 0.142857 0.285714 0.285714 0.000000 0.000000 0.857143 0.142857 0.857143 0.000000 0.142857 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.142857 0.857143 0.000000 0.571429 0.285714 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.285714 0.571429 0.000000 0.285714 0.714286 0.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.285714 0.428571 0.285714 0.000000 0.285714 0.285714 0.000000 0.428571 0.000000 0.714286 0.000000 0.285714 1.000000 0.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.714286 0.285714 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.142857 0.000000 0.000000 0.857143 0.000000 0.428571 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.142857 0.000000 0.142857 0.285714 0.000000 0.142857 0.571429 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.142857 0.571429 0.000000 0.428571 0.571429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRMNGARGMASCTGVHCACAYTSCAWCWS MEME-9 regular expression -------------------------------------------------------------------------------- T[AG][AC][AGT]GA[GA]G[AC]A[GC][CA]TG[CAG][TAC][CT]A[CT][AC][TC]T[GC]CA[TA]C[TA][GC] -------------------------------------------------------------------------------- Time 3976.17 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCMTCCAGAVARGC MEME-10 width = 15 sites = 19 llr = 235 E-value = 5.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCMTCCAGAVARGC MEME-10 Description -------------------------------------------------------------------------------- Simplified A 2::412:8:6385:: pos.-specific C 1:96177113421:a probability G 181:1131924:3a: matrix T 72::8:::::::1:: bits 2.2 ** 1.9 * ** 1.7 * * ** 1.5 ** * ** Relative 1.3 ** * * * ** Entropy 1.1 **** * * * ** (17.8 bits) 0.9 ******** * ** 0.6 ********* * ** 0.4 ************ ** 0.2 *************** 0.0 --------------- Multilevel TGCCTCCAGACAAGC consensus A AG CG G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMTCCAGAVARGC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr3:105589998-105590098 + 23 4.52e-09 AGGGCCTAAT TGCATCCAGAGAAGC TCTCTGCCTG chr15:31422793-31422893 - 69 6.27e-08 CAAGCAGAAG TGCATCCAGGGAGGC CTCTCTGGAA chr15:12640885-12640985 - 21 6.88e-08 TGAAATTTGA TGCATCGAGCCAAGC AGAGGGCTCA chr5:72422689-72422789 - 45 2.14e-07 AGTGTTTGGT TGCATACAGAAAGGC TGAGGACAAG chr18:68226887-68226987 - 17 2.14e-07 GCGCAAATAC AGCATCGAGACAAGC CTTTAAAACC chr3:31232682-31232782 + 76 2.14e-07 AGACCTATGT TTCCTCCAGCAAAGC CTTTGTATCA chr11:9299553-9299653 + 58 2.80e-07 CTATCTCATT TGCCACCAGACAGGC TGCCCTACTT chr12:75362573-75362673 - 78 3.14e-07 GTCATGGC TGCCTACAGACCGGC TTGCGTATCA chr1:134916395-134916495 + 37 3.45e-07 atggaggcat ttcctccagggaggc tcctttctct chr1:8867715-8867815 + 63 5.21e-07 ctcaacaaca agcctgcagaaaagc tgtggaagca chr17:81545989-81546089 + 61 7.66e-07 CTGAGGATCC TGCATAGAGCAAAGC TTTGTCATCT chr1:7535064-7535164 + 86 7.66e-07 aattgctaac tggctacagccaagc chr16:94765115-94765215 + 85 1.10e-06 ATGGATGAAA GGCATCCGGAGAAGC C chr10:42308572-42308672 + 9 2.15e-06 TCCTGGGA TTCCTCCGGAGATGC TGACTCAGCA chr4:65477080-65477180 - 59 2.15e-06 TGAGTCAGAC TGCCCCCACACAAGC GCAGGCGCAG chr13:11338159-11338259 - 74 3.12e-06 GCAAGCCAAT CGCCTGGAGCAAAGC CTTGTTCAAG chr10:111582949-11158304 - 21 3.63e-06 AGGCATTGTG TGCCTCGCGAGCTGC AGCGCTGATA chr2:168424175-168424275 + 76 6.22e-06 ATTCCCAGCC CGGCTCCAGAGCCGC ACATCATGTC chr10:82811834-82811934 - 27 2.28e-05 CTTGCTCTCG AGCAGCCCGGCACGC GAGGGGGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMTCCAGAVARGC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:105589998-105590098 4.5e-09 22_[+10]_63 chr15:31422793-31422893 6.3e-08 68_[-10]_17 chr15:12640885-12640985 6.9e-08 20_[-10]_65 chr5:72422689-72422789 2.1e-07 44_[-10]_41 chr18:68226887-68226987 2.1e-07 16_[-10]_69 chr3:31232682-31232782 2.1e-07 75_[+10]_10 chr11:9299553-9299653 2.8e-07 57_[+10]_28 chr12:75362573-75362673 3.1e-07 77_[-10]_8 chr1:134916395-134916495 3.4e-07 36_[+10]_49 chr1:8867715-8867815 5.2e-07 62_[+10]_23 chr17:81545989-81546089 7.7e-07 60_[+10]_25 chr1:7535064-7535164 7.7e-07 85_[+10] chr16:94765115-94765215 1.1e-06 84_[+10]_1 chr10:42308572-42308672 2.2e-06 8_[+10]_77 chr4:65477080-65477180 2.2e-06 58_[-10]_27 chr13:11338159-11338259 3.1e-06 73_[-10]_12 chr10:111582949-11158304 3.6e-06 20_[-10]_65 chr2:168424175-168424275 6.2e-06 75_[+10]_10 chr10:82811834-82811934 2.3e-05 26_[-10]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMTCCAGAVARGC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCMTCCAGAVARGC width=15 seqs=19 chr3:105589998-105590098 ( 23) TGCATCCAGAGAAGC 1 chr15:31422793-31422893 ( 69) TGCATCCAGGGAGGC 1 chr15:12640885-12640985 ( 21) TGCATCGAGCCAAGC 1 chr5:72422689-72422789 ( 45) TGCATACAGAAAGGC 1 chr18:68226887-68226987 ( 17) AGCATCGAGACAAGC 1 chr3:31232682-31232782 ( 76) TTCCTCCAGCAAAGC 1 chr11:9299553-9299653 ( 58) TGCCACCAGACAGGC 1 chr12:75362573-75362673 ( 78) TGCCTACAGACCGGC 1 chr1:134916395-134916495 ( 37) TTCCTCCAGGGAGGC 1 chr1:8867715-8867815 ( 63) AGCCTGCAGAAAAGC 1 chr17:81545989-81546089 ( 61) TGCATAGAGCAAAGC 1 chr1:7535064-7535164 ( 86) TGGCTACAGCCAAGC 1 chr16:94765115-94765215 ( 85) GGCATCCGGAGAAGC 1 chr10:42308572-42308672 ( 9) TTCCTCCGGAGATGC 1 chr4:65477080-65477180 ( 59) TGCCCCCACACAAGC 1 chr13:11338159-11338259 ( 74) CGCCTGGAGCAAAGC 1 chr10:111582949-11158304 ( 21) TGCCTCGCGAGCTGC 1 chr2:168424175-168424275 ( 76) CGGCTCCAGAGCCGC 1 chr10:82811834-82811934 ( 27) AGCAGCCCGGCACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMTCCAGAVARGC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 12.3043 E= 5.4e+005 -81 -108 -208 130 -1089 -1089 192 -81 -1089 200 -108 -1089 60 138 -1089 -1089 -239 -208 -208 160 -40 162 -108 -1089 -1089 172 24 -1089 151 -108 -108 -1089 -1089 -208 209 -1089 106 24 -50 -1089 -7 72 72 -1089 160 -50 -1089 -1089 93 -108 24 -139 -1089 -1089 216 -1089 -1089 216 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMTCCAGAVARGC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 19 E= 5.4e+005 0.157895 0.105263 0.052632 0.684211 0.000000 0.000000 0.842105 0.157895 0.000000 0.894737 0.105263 0.000000 0.421053 0.578947 0.000000 0.000000 0.052632 0.052632 0.052632 0.842105 0.210526 0.684211 0.105263 0.000000 0.000000 0.736842 0.263158 0.000000 0.789474 0.105263 0.105263 0.000000 0.000000 0.052632 0.947368 0.000000 0.578947 0.263158 0.157895 0.000000 0.263158 0.368421 0.368421 0.000000 0.842105 0.157895 0.000000 0.000000 0.526316 0.105263 0.263158 0.105263 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMTCCAGAVARGC MEME-10 regular expression -------------------------------------------------------------------------------- TGC[CA]T[CA][CG]AG[AC][CGA]A[AG]GC -------------------------------------------------------------------------------- Time 4387.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:110540361-110540461 8.15e-01 100 chr17:58407742-58407842 1.81e-04 4_[+5(1.60e-06)]_11_[-2(2.63e-05)]_\ 66 chr6:112530752-112530852 6.88e-01 100 chr14:96028896-96028996 3.29e-01 46_[+2(4.74e-05)]_46 chr2:66214285-66214385 1.29e-05 79_[+4(1.72e-09)]_6 chr1:7535064-7535164 1.81e-01 85_[+10(7.66e-07)] chr12:5251212-5251312 2.30e-02 71_[+2(2.63e-05)]_21 chrX:93911164-93911264 3.38e-04 14_[+5(8.19e-05)]_14_[-3(5.81e-08)]_\ 46 chr5:47687304-47687404 8.76e-01 100 chr15:38247754-38247854 1.09e-03 59_[-3(2.91e-06)]_26 chr15:12084153-12084253 8.24e-05 8_[+2(9.46e-05)]_42_[+3(5.02e-06)]_\ 5_[+10(2.49e-05)]_7 chr2:90504577-90504677 5.32e-05 28_[+9(1.46e-10)]_43 chr10:116403784-11640388 1.73e-03 30_[-1(9.00e-05)]_41 chr1:166809419-166809519 8.75e-01 100 chr9:41933215-41933315 5.55e-01 100 chr11:35566947-35567047 1.80e-03 55_[-3(7.56e-05)]_30 chr2:121828383-121828483 1.55e-01 42_[-1(7.07e-05)]_29 chr12:71371979-71372079 3.76e-07 [+1(5.62e-07)]_2_[+9(4.18e-05)]_1_\ [-2(9.46e-05)]_31 chr6:49633406-49633506 1.89e-05 [-4(2.05e-07)]_31_[-2(2.63e-05)]_46 chr11:9299553-9299653 9.54e-04 57_[+10(2.80e-07)]_28 chr3:28835745-28835845 8.76e-02 100 chr12:54405048-54405148 1.55e-01 100 chr1:21804982-21805082 7.75e-02 100 chr2:90514391-90514491 3.05e-01 100 chr8:124193861-124193961 3.32e-06 2_[+5(3.60e-05)]_11_[-5(5.65e-05)]_\ 13_[+6(5.14e-06)]_41 chr14:102859669-10285976 9.92e-01 100 chr8:14811076-14811176 4.95e-02 100 chr2:139335659-139335759 9.51e-01 100 chr15:93007327-93007427 1.08e-03 31_[+5(4.74e-05)]_58 chr8:36368402-36368502 1.01e-08 24_[+4(3.33e-06)]_9_[+8(1.00e-12)]_\ 32 chr4:46832806-46832906 1.80e-04 27_[-1(7.56e-07)]_44 chr12:90010239-90010339 5.79e-01 100 chr9:72136927-72137027 4.07e-01 100 chr1:35258631-35258731 2.35e-04 8_[-2(2.63e-05)]_49_[-5(8.95e-06)]_\ 24 chr10:82811834-82811934 1.70e-05 26_[-10(2.28e-05)]_[+1(8.04e-08)]_\ 30 chr7:143294947-143295047 1.18e-03 19_[+4(3.28e-09)]_66 chr10:93359037-93359137 1.42e-01 59_[-10(4.33e-05)]_26 chr5:49094864-49094964 4.85e-01 100 chr14:8470381-8470481 4.71e-01 100 chr3:80725252-80725352 5.01e-01 100 chr16:71062686-71062786 1.90e-02 11_[+1(7.52e-05)]_60 chr18:56676469-56676569 1.59e-08 32_[+7(1.62e-08)]_14_[-1(6.83e-10)]_\ 10 chr14:47023474-47023574 1.06e-02 100 chr16:91761135-91761235 3.78e-06 16_[+5(1.34e-06)]_3_[-9(1.06e-05)]_\ 4_[+1(1.11e-05)]_8 chr3:120898149-120898249 3.74e-01 100 chr4:65477080-65477180 1.14e-05 41_[-5(1.93e-05)]_6_[-10(2.15e-06)]_\ 8_[-2(2.63e-05)]_11 chr5:118458993-118459093 1.55e-06 21_[+1(2.39e-08)]_50 chr6:67014412-67014512 1.60e-02 24_[-1(7.99e-05)]_47 chr14:64127245-64127345 1.39e-04 37_[+6(4.23e-06)]_52 chrX:10540717-10540817 4.25e-01 67_[+2(2.63e-05)]_25 chr4:5690358-5690458 1.71e-08 2_[+1(7.56e-07)]_14_[+2(2.63e-05)]_\ 47 chr11:33695032-33695132 1.98e-08 5_[-1(4.31e-13)]_9_[-1(4.50e-12)]_\ 11_[+7(1.03e-07)]_2 chr7:118390672-118390772 4.18e-02 100 chr4:49285840-49285940 7.36e-06 48_[+4(1.72e-09)]_1_[+4(1.72e-09)]_\ 21 chr15:65552107-65552207 7.00e-02 100 chr2:66179760-66179860 1.11e-01 21_[-7(4.12e-05)]_64 chr18:14402664-14402764 7.59e-02 100 chr13:72056434-72056534 5.99e-03 71_[+1(4.24e-06)] chr9:23463201-23463301 2.22e-02 55_[+6(8.53e-05)]_34 chr13:45721670-45721770 1.33e-01 100 chr2:4059379-4059479 7.12e-01 100 chr3:84125236-84125336 6.92e-01 100 chr2:76102148-76102248 8.32e-01 100 chr18:71621717-71621817 2.13e-01 100 chr12:40595281-40595381 5.15e-02 31_[+3(5.57e-05)]_54 chr10:21446619-21446719 1.88e-01 100 chr13:93057420-93057520 2.03e-04 50_[-1(8.36e-09)]_21 chr4:67523021-67523121 4.45e-01 41_[-9(4.27e-05)]_30 chr5:69233569-69233669 6.17e-06 50_[-1(8.36e-09)]_21 chr3:146381376-146381476 8.27e-05 31_[-1(2.73e-07)]_40 chr2:167129134-167129234 2.89e-03 5_[-5(3.08e-06)]_84 chr15:62908231-62908331 1.51e-02 76_[+6(1.24e-05)]_13 chr18:77432595-77432695 1.02e-05 84_[-4(3.56e-07)]_1 chr2:33271166-33271266 1.38e-02 100 chr3:117675802-117675902 7.53e-01 100 chr9:16066658-16066758 7.62e-01 100 chr12:26680164-26680264 2.89e-02 20_[+5(1.33e-05)]_69 chr2:139287537-139287637 3.21e-02 10_[-7(8.25e-05)]_75 chr10:10872386-10872486 6.42e-01 100 chr2:76438352-76438452 7.41e-01 100 chr13:59074028-59074128 1.44e-04 [+1(3.01e-06)]_21_[+7(1.95e-05)]_35 chr9:46814663-46814763 3.04e-08 8_[+6(2.80e-05)]_17_[-9(2.34e-10)]_\ 35 chr12:95102229-95102329 9.72e-01 100 chr6:37216341-37216441 3.89e-06 36_[-1(1.13e-07)]_13_[-5(1.74e-05)]_\ 11 chr14:101110129-10111022 7.06e-01 100 chr2:123696395-123696495 6.37e-03 13_[+6(5.14e-06)]_76 chr9:30134259-30134359 2.72e-04 10_[-7(1.03e-06)]_52_[-2(6.20e-05)]_\ 15 chr3:76448173-76448273 9.63e-01 100 chr8:47268416-47268516 1.61e-02 100 chr15:42800824-42800924 1.25e-01 1_[+2(9.46e-05)]_91 chr13:10084124-10084224 5.84e-02 83_[-6(4.41e-05)]_6 chr18:40553114-40553214 6.17e-01 100 chr8:81638721-81638821 1.23e-03 49_[+6(2.86e-06)]_40 chr14:77834248-77834348 7.60e-01 100 chr6:100558068-100558168 2.67e-02 100 chr14:46075349-46075449 6.98e-03 27_[-4(2.04e-05)]_58 chr8:126660539-126660639 4.09e-09 48_[+1(6.57e-14)]_3_[-7(3.17e-05)]_\ 5 chr2:139378769-139378869 1.08e-06 68_[-1(6.83e-10)]_3 chrX:63698045-63698145 3.07e-01 100 chr15:87596975-87597075 3.94e-01 100 chr12:29029385-29029485 1.42e-03 40_[+1(4.26e-05)]_22_[-2(2.63e-05)]_\ 1 chr2:13296812-13296912 6.97e-05 21_[+7(7.38e-05)]_27_[-4(3.33e-06)]_\ 22 chr9:68591010-68591110 3.99e-01 100 chr3:90183021-90183121 3.40e-01 20_[-2(9.46e-05)]_72 chr2:71147681-71147781 7.24e-01 100 chr9:120363489-120363589 2.55e-10 53_[-1(4.31e-13)]_1_[+7(1.03e-07)]_\ 2 chr15:15888785-15888885 9.56e-11 1_[-8(1.00e-12)]_9_[-4(3.33e-06)]_\ 55 chrX:163042679-163042779 4.40e-01 100 chr3:87694428-87694528 6.92e-01 100 chr6:75340990-75341090 6.35e-04 49_[+5(3.60e-05)]_11_[-2(2.63e-05)]_\ 21 chr3:117438682-117438782 1.25e-04 26_[+4(1.35e-05)]_15_[-3(1.71e-07)]_\ 29 chr10:9082567-9082667 6.93e-02 100 chr11:114638588-11463868 1.87e-04 12_[+1(6.40e-06)]_59 chr12:54017218-54017318 2.43e-02 36_[-2(2.63e-05)]_56 chr10:88407030-88407130 9.29e-05 25_[+1(4.24e-06)]_20_[+5(3.08e-06)]_\ 15 chrX:167081307-167081407 3.11e-03 59_[-9(6.15e-05)]_12 chr7:72195628-72195728 1.09e-04 56_[-2(2.63e-05)]_19_[+6(5.14e-06)]_\ 6 chr3:49974981-49975081 3.92e-02 88_[+2(9.46e-05)]_4 chr1:170746148-170746248 8.73e-02 100 chr6:148384386-148384486 2.01e-02 40_[-2(4.74e-05)]_52 chr13:107449751-10744985 1.52e-02 100 chr4:68930043-68930143 8.22e-02 100 chr15:12246290-12246390 7.99e-02 90_[+2(2.63e-05)]_2 chrX:162466838-162466938 8.11e-01 100 chr11:18751332-18751432 1.73e-01 40_[-6(2.80e-05)]_49 chr13:41571980-41572080 2.68e-03 [-3(3.08e-06)]_59_[-3(2.48e-08)]_11 chr8:57353555-57353655 2.78e-04 73_[-7(7.38e-05)]_12 chr4:99273892-99273992 7.72e-02 51_[+2(2.63e-05)]_41 chr8:10538176-10538276 6.41e-01 100 chr16:81285215-81285315 2.91e-01 45_[-2(4.74e-05)]_47 chr13:57522239-57522339 6.65e-04 80_[+5(2.61e-05)]_9 chr16:42368642-42368742 1.33e-01 100 chr2:104208477-104208577 6.76e-02 100 chr2:3168187-3168287 1.22e-01 39_[+2(9.46e-05)]_53 chr9:120672425-120672525 1.24e-04 12_[+4(1.00e-06)]_19_\ [-10(8.18e-05)]_39 chr4:59388675-59388775 2.34e-01 61_[+5(2.19e-05)]_28 chr5:75552909-75553009 2.65e-01 100 chr1:22620752-22620852 4.72e-01 100 chr13:10161221-10161321 4.42e-01 100 chr18:50400058-50400158 5.60e-04 49_[-5(5.28e-06)]_16_[+2(2.63e-05)]_\ 16 chr18:25542618-25542718 1.61e-02 31_[+7(2.72e-05)]_54 chr10:59539358-59539458 4.32e-08 1_[+10(7.48e-05)]_6_[+4(3.90e-06)]_\ [-1(1.01e-06)]_15_[+5(3.08e-06)]_8 chr18:57388257-57388357 9.83e-03 20_[+6(2.80e-05)]_7_[+2(9.46e-05)]_\ 54 chr7:89797724-89797824 6.05e-06 36_[-2(2.63e-05)]_34_[-6(3.23e-07)]_\ 11 chr16:21358334-21358434 5.21e-02 100 chr4:46923467-46923567 8.53e-04 65_[-10(1.83e-06)]_20 chr12:85563172-85563272 9.87e-06 [-7(2.08e-07)]_10_[+2(2.63e-05)]_67 chr16:47490004-47490104 1.70e-01 100 chr17:27230893-27230993 1.99e-03 9_[+10(6.85e-05)]_76 chr14:12574254-12574354 3.04e-01 100 chr4:120368593-120368693 6.30e-04 56_[-3(1.52e-06)]_29 chr13:104978111-10497821 1.63e-01 100 chr3:158224151-158224251 3.38e-02 100 chr3:31232682-31232782 2.11e-03 75_[+10(2.14e-07)]_10 chr14:64183558-64183658 5.57e-01 100 chr10:9239880-9239980 8.48e-02 100 chr12:89159378-89159478 1.00e-03 63_[-6(9.65e-06)]_26 chr15:20574426-20574526 7.56e-01 100 chr9:22789416-22789516 4.51e-02 100 chr2:7195949-7196049 5.45e-01 57_[+2(9.46e-05)]_35 chr13:107888959-10788905 3.46e-06 41_[+1(7.16e-08)]_7_[-6(2.80e-05)]_\ 12 chr3:85106900-85107000 1.05e-02 100 chr10:101843546-10184364 1.39e-01 1_[+5(3.15e-05)]_88 chr11:82631194-82631294 3.85e-05 4_[-1(9.58e-09)]_67 chr3:17834644-17834744 1.30e-04 2_[-2(2.63e-05)]_47_[+3(1.52e-08)]_\ 28 chr19:32862149-32862249 8.36e-01 100 chr2:168424175-168424275 5.41e-05 75_[+10(6.22e-06)]_10 chr13:110018793-11001889 8.02e-02 100 chr15:91969327-91969427 1.06e-06 43_[+3(6.30e-09)]_42 chr6:31184357-31184457 4.15e-01 100 chr15:19872611-19872711 7.26e-02 [-10(5.68e-05)]_19_[+2(2.63e-05)]_\ 58 chr6:40053050-40053150 2.10e-02 64_[-5(5.28e-05)]_25 chr17:66221150-66221250 3.97e-07 15_[-1(4.17e-09)]_56 chr4:119933050-119933150 8.76e-07 5_[+3(6.72e-05)]_24_[-1(4.81e-09)]_\ 27 chr13:91955113-91955213 2.45e-02 81_[-5(3.97e-06)]_8 chr5:71061508-71061608 7.49e-04 100 chr15:49562182-49562282 5.63e-02 67_[+1(3.73e-05)]_4 chr5:41973280-41973380 1.23e-01 43_[-6(2.51e-05)]_46 chr15:30785653-30785753 6.18e-03 40_[-6(1.24e-05)]_2_[-6(1.24e-05)]_\ 2_[-6(1.24e-05)]_23 chr10:40760917-40761017 2.42e-04 56_[-5(2.19e-05)]_33 chr2:124512727-124512827 1.71e-01 35_[+6(5.07e-05)]_54 chrX:93068832-93068932 7.27e-05 21_[-1(9.51e-06)]_3_[+6(4.23e-06)]_\ 36 chr1:169370307-169370407 1.13e-01 100 chr13:76759981-76760081 3.73e-02 54_[+3(1.34e-07)]_31 chrX:58632229-58632329 4.78e-01 100 chr7:54922447-54922547 7.80e-01 100 chr16:22617768-22617868 2.34e-01 100 chr6:10690463-10690563 5.41e-05 61_[+1(4.59e-07)]_10 chr15:6559105-6559205 5.48e-02 100 chr19:45337548-45337648 1.07e-02 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chr5:60777512-60777612 1.02e-01 100 chr17:64406926-64407026 5.59e-01 100 chr2:73817356-73817456 3.78e-01 100 chr3:58468326-58468426 8.80e-01 100 chr11:108203140-10820324 8.84e-01 100 chr11:59885473-59885573 2.45e-03 7_[-5(3.08e-06)]_82 chr1:76343449-76343549 7.15e-01 100 chr3:90127925-90128025 2.85e-02 100 chr4:149796550-149796650 4.88e-03 26_[+1(5.08e-07)]_45 chr17:67246431-67246531 6.60e-01 100 chr18:68123399-68123499 4.74e-01 25_[-2(2.63e-05)]_67 chr16:85699179-85699279 1.19e-01 100 chr5:132209807-132209907 2.13e-03 72_[-7(1.22e-06)]_13 chr18:80069007-80069107 4.36e-03 59_[+7(3.04e-06)]_26 chr1:143524208-143524308 9.42e-01 100 chrX:93131489-93131589 3.27e-01 100 chr5:63689969-63690069 5.47e-09 16_[+4(3.33e-06)]_9_[+8(1.00e-12)]_\ 40 chr16:84963467-84963567 1.36e-03 48_[+2(2.63e-05)]_44 chr10:25074941-25075041 3.79e-02 100 chr1:58622252-58622352 3.89e-05 69_[-1(3.90e-06)]_2 chr12:55344535-55344635 7.98e-02 100 chr18:39903204-39903304 6.30e-02 100 chr7:58787604-58787704 5.12e-06 83_[+7(4.05e-08)]_2 chr11:33685843-33685943 2.39e-04 87_[+6(6.13e-05)]_2 chr11:57094797-57094897 4.64e-03 5_[+7(6.44e-07)]_80 chr14:121200322-12120042 2.58e-03 100 chr5:80508613-80508713 7.27e-07 7_[-5(3.61e-06)]_54_[-3(3.16e-08)]_\ 13 chr16:6075275-6075375 3.40e-03 51_[+6(3.08e-05)]_38 chr15:36374776-36374876 2.49e-04 12_[-10(4.67e-07)]_73 chr1:162108666-162108766 1.35e-01 100 chr9:29832821-29832921 6.77e-03 83_[-6(2.54e-06)]_6 chr11:108857856-10885795 5.10e-04 18_[+4(9.41e-05)]_17_[+7(8.25e-05)]_\ 35 chr8:109417162-109417262 2.06e-04 28_[+1(3.49e-05)]_43 chr2:165817332-165817432 1.87e-02 100 chr14:97165819-97165919 6.89e-01 100 chr10:90778024-90778124 3.92e-03 4_[-4(1.72e-09)]_81 chr18:60747534-60747634 1.07e-03 11_[+1(2.15e-05)]_60 chr9:93843828-93843928 1.16e-01 68_[-2(2.63e-05)]_24 chr17:44031067-44031167 9.22e-01 100 chr10:114325381-11432548 2.35e-02 50_[+1(7.99e-05)]_21 chr19:17488445-17488545 1.06e-03 17_[+5(2.19e-05)]_5_[+3(3.45e-05)]_\ 52 chr7:137468120-137468220 2.65e-02 100 chr3:80049424-80049524 2.19e-01 100 chr10:26703141-26703241 1.32e-03 3_[-10(2.83e-05)]_66_[-5(3.60e-05)]_\ 5 chr13:99391392-99391492 2.62e-06 8_[+6(1.45e-05)]_52_[-9(4.60e-06)] chr7:112792543-112792643 8.01e-01 100 chr6:9133138-9133238 9.70e-01 100 chr2:163254986-163255086 7.13e-01 100 chr10:106596874-10659697 1.65e-05 48_[-2(2.63e-05)]_6_[+9(9.72e-05)]_\ 9 chr2:169138279-169138379 9.95e-01 100 chr6:139309456-139309556 2.58e-02 48_[+5(5.28e-05)]_41 chr7:115388774-115388874 6.17e-01 100 chr8:62555736-62555836 1.00e+00 100 chr8:14542233-14542333 5.33e-04 77_[+2(2.63e-05)]_15 chr13:97461194-97461294 3.82e-03 69_[-6(1.09e-05)]_20 chr3:15156474-15156574 5.42e-01 100 chr13:18456613-18456713 4.48e-02 2_[+5(5.28e-05)]_87 chr16:33426843-33426943 1.80e-05 8_[+7(7.68e-08)]_77 chr1:123044144-123044244 1.75e-09 36_[+9(1.56e-14)]_35 chr1:8863631-8863731 7.07e-03 5_[+5(1.12e-05)]_3_[+5(1.12e-05)]_8_\ [-5(2.60e-07)]_3_[-5(2.60e-07)]_3_[-5(2.60e-07)]_3_[-5(2.60e-07)]_9 chr6:6544188-6544288 1.41e-05 37_[+5(1.92e-06)]_52 chr5:44734091-44734191 5.20e-01 100 chr2:77472434-77472534 1.00e-01 100 chr19:37657467-37657567 3.68e-01 100 chr15:37062493-37062593 3.61e-04 100 chr13:97892444-97892544 7.58e-03 9_[+4(1.20e-06)]_44_[-2(9.46e-05)]_\ 24 chr6:49743110-49743210 4.79e-04 8_[-2(2.63e-05)]_84 chr17:42419789-42419889 5.30e-01 100 chr6:90858637-90858737 9.78e-01 100 chr12:107931314-10793141 1.02e-04 1_[+4(1.72e-09)]_13_[+4(1.72e-09)]_\ 56 chr5:54437499-54437599 3.38e-01 36_[-5(5.28e-05)]_53 chr1:23286682-23286782 2.98e-01 100 chr13:105733025-10573312 7.49e-01 100 chr9:29874728-29874828 3.27e-01 100 chr10:42308572-42308672 5.10e-03 8_[+10(2.15e-06)]_77 chr4:142574559-142574659 7.13e-02 100 chr17:80982329-80982429 4.58e-03 21_[+6(5.14e-06)]_28_[-4(9.79e-05)]_\ 25 chr4:90564357-90564457 8.40e-01 100 chr17:70629838-70629938 1.75e-07 30_[+10(2.18e-05)]_4_[-2(2.63e-05)]_\ 14_[+1(6.85e-07)] chr12:54833897-54833997 1.50e-05 50_[+5(3.61e-06)]_39 chr4:93762642-93762742 9.66e-01 100 chr1:168363180-168363280 7.79e-01 100 chr17:81545989-81546089 2.29e-03 60_[+10(7.66e-07)]_25 chr5:74364911-74365011 3.90e-01 100 chr1:144498090-144498190 3.73e-05 22_[-4(9.19e-06)]_3_[+5(7.58e-05)]_\ 49 chr1:167938207-167938307 8.65e-03 23_[-6(6.91e-06)]_66 chr13:48226892-48226992 3.76e-01 100 chr16:21854465-21854565 1.44e-05 52_[+2(4.74e-05)]_40 chr15:78674981-78675081 1.95e-01 100 chr1:143501847-143501947 5.73e-01 80_[-7(2.87e-05)]_5 chr18:80682543-80682643 1.86e-03 20_[-1(1.11e-06)]_51 chr11:33789516-33789616 1.15e-05 20_[-6(3.23e-07)]_34_[-5(1.59e-05)]_\ 24 chr4:66336409-66336509 4.46e-03 60_[-8(6.18e-05)]_20 chr16:65029536-65029636 4.21e-01 100 chr7:78498362-78498462 3.15e-01 100 chr5:50202984-50203084 9.35e-04 11_[-9(3.04e-05)]_50_[+2(2.63e-05)]_\ 2 chr18:37877057-37877157 2.39e-05 30_[+5(2.60e-07)]_1_[-9(5.42e-05)]_\ 29 chr12:92775642-92775742 2.41e-04 8_[+2(9.46e-05)]_70_[+2(2.63e-05)]_\ 6 chr5:37551593-37551693 4.23e-02 44_[+4(5.25e-06)]_41 chr18:33857879-33857979 4.35e-01 100 chr18:66653739-66653839 6.63e-03 53_[-5(7.58e-05)]_36 chr5:118115716-118115816 5.60e-04 62_[+1(3.74e-07)]_9 chr4:89776262-89776362 6.46e-03 16_[+6(3.23e-07)]_73 chr12:10940730-10940830 1.99e-05 33_[+1(9.18e-07)]_38 chr1:163266401-163266501 5.49e-01 100 chr18:40371953-40372053 2.87e-01 100 chr15:67942884-67942984 8.94e-01 100 chr4:48409000-48409100 5.10e-01 100 chr1:24302649-24302749 6.53e-03 38_[-6(6.91e-06)]_4_[-4(9.04e-05)]_\ 32 chr4:138555454-138555554 1.75e-07 11_[+5(3.08e-06)]_1_[-1(6.85e-07)]_\ 48 chr9:34538333-34538433 2.19e-07 18_[+1(5.82e-10)]_53 chr11:118738766-11873886 1.14e-01 100 chrX:133624127-133624227 2.10e-01 100 chr12:27064970-27065070 1.42e-02 46_[+1(9.00e-05)]_25 chr19:42392028-42392128 5.57e-03 100 chr8:86309385-86309485 4.59e-01 100 chr4:130984364-130984464 1.58e-02 100 chr1:39232163-39232263 2.53e-01 33_[+10(6.85e-05)]_52 chr17:9829709-9829809 9.10e-01 100 chr9:77469757-77469857 2.32e-09 25_[+1(6.83e-10)]_10_[-6(2.80e-05)]_\ 25 chr13:10024067-10024167 9.41e-02 50_[-7(4.72e-06)]_35 chr13:43514821-43514921 1.47e-02 49_[+10(5.86e-05)]_36 chr18:63762226-63762326 3.20e-02 70_[-9(9.36e-05)]_1 chr18:6191002-6191102 9.21e-02 74_[-4(1.00e-06)]_11 chr4:63994378-63994478 9.05e-01 100 chr15:51752730-51752830 4.55e-01 100 chr1:121630385-121630485 6.12e-01 100 chr19:30205372-30205472 7.14e-03 19_[-3(9.09e-07)]_66 chr15:27790665-27790765 7.66e-02 100 chr13:11338159-11338259 9.34e-06 26_[-5(2.60e-07)]_36_\ [-10(3.12e-06)]_12 chr13:46180414-46180514 7.36e-05 30_[-7(1.34e-06)]_55 chr10:116757342-11675744 2.39e-02 30_[-2(6.20e-05)]_16_\ [+10(8.64e-05)]_31 chr15:29432921-29433021 3.36e-02 100 chr1:144916514-144916614 4.29e-02 100 chr13:46571051-46571151 7.62e-03 3_[+5(3.82e-05)]_86 chr5:139951300-139951400 4.55e-04 9_[+10(3.07e-05)]_76 chr2:107614695-107614795 3.03e-01 100 chr12:49887202-49887302 1.36e-02 100 chr6:6059861-6059961 9.68e-04 33_[-10(7.06e-06)]_52 chr11:82484225-82484325 3.26e-03 7_[-2(9.46e-05)]_34_[+2(9.46e-05)]_\ 6_[-6(5.14e-06)]_26 chr5:52036580-52036680 2.26e-03 8_[+5(1.33e-05)]_81 chr5:42174595-42174695 2.77e-01 100 chr18:69898868-69898968 6.07e-02 73_[+5(1.12e-05)]_16 chr17:30469627-30469727 7.24e-01 100 chr6:99339061-99339161 4.02e-04 69_[+4(2.91e-07)]_16 chr15:36937893-36937993 4.28e-01 100 chr6:103320553-103320653 7.29e-01 100 chr16:33158562-33158662 5.18e-01 100 chr11:112458016-11245811 6.85e-02 77_[-6(8.22e-06)]_12 chr11:35517509-35517609 5.53e-02 36_[-1(1.47e-06)]_35 chr11:81695074-81695174 7.55e-01 100 chr3:63398610-63398710 3.66e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-39.local ********************************************************************************