# DREME 4.12.0 # command: dreme -v 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/dreme_out -png -dna -p /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-centered -n /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/control-centered # positives: 42041 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-centered (Wed Jan 13 22:28:02 EST 2021) # negatives: 202202 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sst_reproduciblePeaks_enhancerShort.MemeChipResults/control-centered (Wed Jan 13 22:28:09 EST 2021) # host: compute-1-39.local # when: Thu Jan 14 01:02:48 EST 2021 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.273 C 0.228 G 0.227 T 0.272 MOTIF CAGVTGY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAGVTGY RCABCTG 11236 32942 5.0e-515 2.3e-510 # CAGCTGC GCAGCTG 4320 10129 2.2e-329 1.0e-324 # CAGCTGT ACAGCTG 3911 9730 5.4e-256 2.5e-251 # CAGATGT ACATCTG 2310 6828 1.9e-087 8.9e-083 # CAGGTGC GCACCTG 949 2534 4.5e-050 2.1e-045 # CAGATGC GCATCTG 1767 6746 4.2e-018 2.0e-013 # CAGGTGT ACACCTG 666 2413 1.3e-010 6.1e-006 letter-probability matrix: alength= 4 w= 7 nsites= 12918 E= 2.3e-510 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.323889 0.549930 0.126181 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.505187 0.000000 0.494813 MOTIF CGNM DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CGNM KNCG 29514 123666 7.8e-274 3.7e-269 # CGCA TGCG 7580 27016 7.4e-131 3.5e-126 # CGGC GCCG 6821 24057 1.9e-123 8.9e-119 # CGGA TCCG 6951 26311 1.3e-078 5.9e-074 # CGCC GGCG 7208 27517 1.1e-076 5.2e-072 # CGTC GACG 5649 22052 1.6e-048 7.3e-044 # CGAA TTCG 5334 21750 7.6e-030 3.5e-025 # CGAC GTCG 3678 14915 1.2e-021 5.8e-017 # CGTA TACG 3794 16296 4.8e-011 2.2e-006 letter-probability matrix: alength= 4 w= 4 nsites= 43294 E= 3.7e-269 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.175151 0.343050 0.298586 0.183212 0.500785 0.499215 0.000000 0.000000 MOTIF GCTGM DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GCTGM KCAGC 19882 82081 8.7e-141 3.1e-136 # GCTGA TCAGC 12280 49834 2.0e-083 7.2e-079 # GCTGC GCAGC 10960 44292 2.7e-075 9.7e-071 letter-probability matrix: alength= 4 w= 5 nsites= 27168 E= 3.1e-136 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.528269 0.471731 0.000000 0.000000 MOTIF CGS DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CGS SCG 9515 35805 6.6e-119 2.3e-114 # CGG CCG 6614 24751 6.0e-081 2.1e-076 # CGC GCG 4769 17112 5.8e-075 2.0e-070 letter-probability matrix: alength= 4 w= 3 nsites= 11818 E= 2.3e-114 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.409037 0.590963 0.000000 MOTIF TGCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TGCA TGCA 18207 77667 1.0e-077 3.1e-073 # TGCA TGCA 18207 77667 1.0e-077 3.1e-073 letter-probability matrix: alength= 4 w= 4 nsites= 24120 E= 3.1e-073 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF SYAATCA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST SYAATCA TGATTRS 1986 6269 3.9e-058 1.1e-053 # GCAATCA TGATTGC 463 1354 3.8e-019 1.1e-014 # GTAATCA TGATTAC 493 1508 2.3e-017 6.8e-013 # CCAATCA TGATTGG 616 2018 3.2e-016 9.5e-012 # CTAATCA TGATTAG 464 1490 1.1e-013 3.3e-009 letter-probability matrix: alength= 4 w= 7 nsites= 2078 E= 1.1e-053 0.000000 0.531761 0.468239 0.000000 0.000000 0.530799 0.000000 0.469201 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCTS DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GCTS SAGC 30281 138901 3.2e-042 9.3e-038 # GCTC GAGC 21912 98978 1.4e-032 4.2e-028 # GCTG CAGC 18921 86905 1.3e-014 3.8e-010 letter-probability matrix: alength= 4 w= 4 nsites= 53976 E= 9.3e-038 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.549541 0.450459 0.000000 MOTIF CACTAGRK DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CACTAGRK MYCTAGTG 887 2625 8.2e-034 2.3e-029 # CACTAGAG CTCTAGTG 282 792 6.8e-014 1.9e-009 # CACTAGGT ACCTAGTG 214 580 4.7e-012 1.3e-007 # CACTAGAT ATCTAGTG 254 761 2.1e-010 5.7e-006 # CACTAGGG CCCTAGTG 142 504 1.1e-003 2.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 901 E= 2.3e-029 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.604883 0.000000 0.395117 0.000000 0.000000 0.000000 0.477248 0.522752 MOTIF AAKCA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AAKCA TGMTT 17954 80602 2.1e-027 5.6e-023 # AAGCA TGCTT 12789 57118 2.4e-019 6.5e-015 # AATCA TGATT 7347 32040 1.3e-016 3.5e-012 letter-probability matrix: alength= 4 w= 5 nsites= 23352 E= 5.6e-023 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.650522 0.349478 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGW DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CGW WCG 4819 20021 1.1e-021 3.0e-017 # CGT ACG 3888 16314 1.7e-015 4.5e-011 # CGA TCG 2803 11814 8.3e-011 2.2e-006 letter-probability matrix: alength= 4 w= 3 nsites= 5183 E= 3.0e-017 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.386263 0.000000 0.000000 0.613737 MOTIF AATTRC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST AATTRC GYAATT 2533 10469 2.2e-012 5.4e-008 # AATTAC GTAATT 1913 7918 1.6e-009 4.1e-005 # AATTGC GCAATT 705 2831 1.2e-005 3.0e-001 letter-probability matrix: alength= 4 w= 6 nsites= 2655 E= 5.4e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.736347 0.000000 0.263653 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TCATCAR DREME-12 # Word RC Word Pos Neg P-value E-value # BEST TCATCAR YTGATGA 1167 4509 2.2e-011 5.4e-007 # TCATCAA TTGATGA 586 2179 3.2e-008 8.0e-004 # TCATCAG CTGATGA 604 2366 4.9e-006 1.2e-001 letter-probability matrix: alength= 4 w= 7 nsites= 1199 E= 5.4e-007 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.492077 0.000000 0.507923 0.000000 MOTIF AGGS DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AGGS SCCT 29601 139131 4.6e-011 1.1e-006 # AGGC GCCT 18277 84822 4.5e-009 1.1e-004 # AGGG CCCT 20321 96112 1.4e-003 3.4e+001 letter-probability matrix: alength= 4 w= 4 nsites= 53568 E= 1.1e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.449783 0.550217 0.000000 MOTIF GTAAAY DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GTAAAY RTTTAC 2600 10967 5.2e-010 1.2e-005 # GTAAAC GTTTAC 1014 4067 1.5e-007 3.4e-003 # GTAAAT ATTTAC 1630 7047 4.9e-005 1.1e+000 letter-probability matrix: alength= 4 w= 6 nsites= 2699 E= 1.2e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.380141 0.000000 0.619859 MOTIF ATTMAG DREME-15 # Word RC Word Pos Neg P-value E-value # BEST ATTMAG CTKAAT 3071 13148 1.5e-009 3.3e-005 # ATTAAG CTTAAT 1034 4224 1.5e-006 3.4e-002 # ATTCAG CTGAAT 2090 9168 6.1e-005 1.4e+000 letter-probability matrix: alength= 4 w= 6 nsites= 3209 E= 3.3e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.328451 0.671549 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 19842.90 seconds