******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sncg_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:120748944-120749044 1.0000 100 chr17:49952001-49952101 1.0000 100 chr6:129229859-129229959 1.0000 100 chr14:101229143-10122924 1.0000 100 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1.0000 100 chr6:113795230-113795330 1.0000 100 chr13:77982480-77982580 1.0000 100 chr5:89711663-89711763 1.0000 100 chr5:100335513-100335613 1.0000 100 chr14:69473951-69474051 1.0000 100 chr9:25389626-25389726 1.0000 100 chr11:22073390-22073490 1.0000 100 chr5:20671789-20671889 1.0000 100 chr18:36148477-36148577 1.0000 100 chr4:104409980-104410080 1.0000 100 chr18:32970509-32970609 1.0000 100 chr13:25986221-25986321 1.0000 100 chr4:106199851-106199951 1.0000 100 chr10:90221390-90221490 1.0000 100 chr18:38380140-38380240 1.0000 100 chr5:118666771-118666871 1.0000 100 chr10:60136840-60136940 1.0000 100 chr10:87665950-87666050 1.0000 100 chr14:11898262-11898362 1.0000 100 chr16:77644364-77644464 1.0000 100 chr1:88474447-88474547 1.0000 100 chr1:160534890-160534990 1.0000 100 chr19:37150219-37150319 1.0000 100 chr12:13100388-13100488 1.0000 100 chr4:87624898-87624998 1.0000 100 chr17:32091308-32091408 1.0000 100 chr7:111998584-111998684 1.0000 100 chr5:75862511-75862611 1.0000 100 chr18:69152699-69152799 1.0000 100 chr13:59145620-59145720 1.0000 100 chr5:55294721-55294821 1.0000 100 chr18:64588586-64588686 1.0000 100 chr19:22905059-22905159 1.0000 100 chr5:149997472-149997572 1.0000 100 chr4:104650517-104650617 1.0000 100 chr12:92152433-92152533 1.0000 100 chr10:86100406-86100506 1.0000 100 chr18:73963276-73963376 1.0000 100 chr16:28630746-28630846 1.0000 100 chr4:66482425-66482525 1.0000 100 chr7:138493566-138493666 1.0000 100 chr5:20363359-20363459 1.0000 100 chr9:28354852-28354952 1.0000 100 chr12:86823913-86824013 1.0000 100 chrX:71106346-71106446 1.0000 100 chr12:110092735-11009283 1.0000 100 chr2:30667355-30667455 1.0000 100 chr1:78838361-78838461 1.0000 100 chr5:4961956-4962056 1.0000 100 chr1:169485356-169485456 1.0000 100 chr17:87139593-87139693 1.0000 100 chr9:53158374-53158474 1.0000 100 chr13:97986690-97986790 1.0000 100 chr13:118040808-11804090 1.0000 100 chr19:22248699-22248799 1.0000 100 chr18:52366041-52366141 1.0000 100 chr4:85162706-85162806 1.0000 100 chr16:11689653-11689753 1.0000 100 chr10:42204779-42204879 1.0000 100 chr2:21280767-21280867 1.0000 100 chr1:76148869-76148969 1.0000 100 chr13:99650220-99650320 1.0000 100 chr14:13892794-13892894 1.0000 100 chr11:113990551-11399065 1.0000 100 chr15:91281426-91281526 1.0000 100 chr10:69594405-69594505 1.0000 100 chr14:15413624-15413724 1.0000 100 chr6:28588650-28588750 1.0000 100 chr2:142561026-142561126 1.0000 100 chr13:24551176-24551276 1.0000 100 chr6:33274748-33274848 1.0000 100 chr12:59815207-59815307 1.0000 100 chr5:89702070-89702170 1.0000 100 chr5:70990771-70990871 1.0000 100 chr19:30843231-30843331 1.0000 100 chr18:15023612-15023712 1.0000 100 chr1:99912851-99912951 1.0000 100 chr16:4379359-4379459 1.0000 100 chr6:140481680-140481780 1.0000 100 chr16:96533659-96533759 1.0000 100 chr12:86824786-86824886 1.0000 100 chr12:29049002-29049102 1.0000 100 chr12:62721096-62721196 1.0000 100 chr3:84061902-84062002 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sncg_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sncg_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sncg_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sncg_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.263 C 0.237 G 0.237 T 0.263 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Sncg_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.271 C 0.229 G 0.229 T 0.271 ******************************************************************************** ******************************************************************************** MOTIF GSVKGGGRRGGVRGGRGRGVS MEME-1 width = 21 sites = 60 llr = 690 E-value = 5.5e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSVKGGGRRGGVRGGRGRGVS MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::22122331:331342514: pos.-specific C :431:1:22123132221:24 probability G a64387855764576474946 matrix T ::141:::112:2::::11:: bits 2.1 * 1.9 * 1.7 * 1.5 * * Relative 1.3 * * * * Entropy 1.1 ** * * * * (16.6 bits) 0.9 ** *** * * * * * 0.6 ** **** ** **** * * 0.4 ** ******** ******** 0.2 ********************* 0.0 --------------------- Multilevel GGGTGGGGGGGGGGGAGAGGG consensus CCG AA CAACAG G AC sequence A C C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSVKGGGRRGGVRGGRGRGVS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr2:160451288-160451388 + 29 3.40e-11 GAATAGGCAT GGGGGGGCGGGGGGGGGGGAG TTGGCTGGGA chr13:59145620-59145720 + 39 3.27e-10 CCTAGCAACA GCGTGGGGGGCGGGGAGAGAG CAGCGCTTGG chr8:11382621-11382721 + 71 5.28e-10 CTTAGTGTGG GGGGGGGGGGGGAGCagagag agagagagc chr5:125767792-125767892 - 76 6.67e-10 GAGA GGGAGGGAGGGAAGGAGAGGG AAAAAAGGAA chr16:33859790-33859890 - 50 1.29e-09 CTGCCGGCCT GCGGGGGGGGGGGGCGGAGAC ATCTCCCTGC chr3:10230628-10230728 + 29 2.39e-09 gagggtagaa gggagggaaggagggagagaG AGAGTAAATT chr3:34521520-34521620 + 20 5.16e-09 CCAATAGGAA GGCTGAGGGGGCGCGGGGGAG GGGGGAATAT chr12:86823913-86824013 - 16 4.51e-08 CGAAGGGCAG GCAGGGGGCCGCGGGAGAGGG CCTGGTTCGC chr2:21918206-21918306 - 25 5.24e-08 TAAATTGGCT GCCTGGGGAAGCGGGCGGGGG TGTCCAGTTT chr11:65877095-65877195 - 19 6.07e-08 AGCTGGTGGG GGGTTGGGGGGGTGCAGAGAG CCTGGAAGTA chr13:99650220-99650320 + 36 1.07e-07 TCAGGCTAAG GGATGGGCAGTGTGGAGGGAG GAGGAACAAA chr2:116975541-116975641 + 24 1.23e-07 CGTTGTGCCG GGCCGGGCCGCGAGGGGAGCG CGGCTGGCAG chr4:33555771-33555871 - 65 2.10e-07 TTGCACAGGC GGATGGGGAGGCTCGGCGGGC TTCGTACCTT chr17:45873418-45873518 + 58 2.39e-07 TGACTCAGGC GGCGGGGCAGGAGGAGCAGCC GGCTCTGCTT chr11:61619735-61619835 + 61 2.71e-07 CGCTGAGATG GGGGAGGACTGGGGGAGGGGG GTGTCTAGAG chr11:98294396-98294496 - 52 3.48e-07 CCCAGCGCCC GCGCGGGAAGGCTGGACGGCG CTCCGCGCAG chr2:157705298-157705398 - 5 3.48e-07 GCCCCAGGGG GCGTGGAGATGGGGAAGGGAG GTCA chr11:79736633-79736733 + 23 3.94e-07 caccaaggat ggatgtggagggaggAGGGAC TGCAGAGGCA chr13:56336931-56337031 + 16 3.94e-07 TACTCGGTAG GGTTGGAGGGTGAGGAGGGGC CACTGAGGAG chr13:93434940-93435040 + 29 4.44e-07 TTGGGCAGAT GGGGAGGAGGGGTGGGGAAGG AACAGCCGTC chr1:132934793-132934893 - 39 7.11e-07 TGGGCTGGGA GCAGTGGGGGGCAGGGCAGCC TCCACCGAGG chr10:41037761-41037861 + 28 7.11e-07 GAGATGGAGT GGGAGGGAGAGAAGGAGGAGG CCTCATCGGG chr4:106838820-106838920 - 64 7.97e-07 GCTCGCCCGG GCGGGGGAAGTGGCGGCGGCC CGCCAAGTTC chr8:74775486-74775586 + 78 7.97e-07 AGGCACTGCA GGGTAGAGAGGGACAGGAGGG GA chr9:48740172-48740272 + 12 7.97e-07 GCCAGCACCA GCTAGAGAGGGAGGAAGGGAG AGACATGCAG chr2:118976195-118976295 - 15 8.92e-07 AGTCAATACC GGGTGGGGCGGAAAGAGAAGG TCCTGTCACT chr18:77225417-77225517 + 26 8.92e-07 TGCTTACAAA GGCTGGGGAGTCTGAGAAGGC GGAGGGATGC chr18:55733211-55733311 - 70 8.92e-07 TAACTCATCC GGCTGCGAAGGCTGCAGAGGG AATTAGTGAA chr2:167860526-167860626 + 77 1.11e-06 CAGAGAACCG GGGATGGAGGGGGCAGAAGAG ACA chr14:25108648-25108748 + 77 1.11e-06 TCAGTGCAGT GGAGAGGGGGGGAAGCGGGAG AGG chr4:91440337-91440437 - 40 1.38e-06 TGTGGGCAGT GGGTGGGGCAGGAAAGGGGGC TGCATTCTTT chr14:100750025-10075012 + 57 1.38e-06 AGTGAGGACA GCAAGGGGTGGGCCGGGAGGC AATGAAGTCA chrX:7416304-7416404 - 77 1.54e-06 TGA GCCTGAGGCTGGGCAAGGGAG GACAGCAGTC chr8:17073721-17073821 - 34 1.71e-06 TGTTCTCTGA GGGAGGAGGTGGAGAGAAGAG GAGCGGGAAC chr9:34771902-34772002 + 29 2.57e-06 GTAATTATAC GCAGGAGGGAGAGAGGGAGCG TTTGCTGAAA chr4:103902032-103902132 + 24 2.57e-06 aagattacat ggctggagagtagggccagAC GCCAAATTCT chr15:103183765-10318386 + 71 3.44e-06 ATTTGGCAGT GGGTGGGCTGCACGCAGGGCG AGTGAGACC chr7:132712112-132712212 + 19 3.79e-06 gctgctgcCT GGCTGGGACGGCACACGTGGC CCTAGCACGG chr2:76073103-76073203 - 58 3.79e-06 TTGTTCTCTG GGGGAGAAGGGCGGGAGATCG CACACTGCAG chr2:66383693-66383793 - 58 3.79e-06 ACAGTATAAG GGGGGAGCGACAGCGGAAGGG TTTAGATTGT chr18:69152699-69152799 - 29 5.50e-06 TGCTGCAGAG GCCTGAACCGCAGGGGAGGGG AGGAGACCTG chr10:42204779-42204879 + 80 6.02e-06 GGTAGAGCTG GCCGGAGAAGCGGCCGAGGAG chr2:101932278-101932378 - 11 6.58e-06 TGAAAGAGGA GGCAGAGGGCTCTGCAGAGAG TCTCTCAATC chr17:32091308-32091408 - 38 7.18e-06 TGATGATGCA GCAATGGGGGCGGGCAGGAGG CCCCTGGGAT chr18:64588586-64588686 - 44 8.55e-06 ATTCAAAACA GCACAGAGGGTAGGGACAGGG CCATGCTGCT chr15:72810126-72810226 + 79 1.01e-05 CTTGGTCCTT GGTTTAGGGGCACGGGGAGAG A chr15:62903030-62903130 + 53 1.10e-05 TGCCAGTAAA GGCTGGACGGGAGCAGAGAGC AGGGCTAATT chr7:65417407-65417507 + 80 1.30e-05 GTCCAAGGTC GGAGGGGAACTGTGGCCAGGC chr11:114192930-11419303 + 7 1.30e-05 TGTGGA GGTTGGGGAGCAACAAGATGG GGGTGTAGCA chr3:17794465-17794565 - 56 1.92e-05 GGAGCCCTCT GGACGGCAGGCCGGAGGCGGC AAGCAGCGGC chr8:120292236-120292336 - 22 1.92e-05 AGTTGAGGGG GCATGGAACAGCAGGCGTGGG TTCCTCCGGG chr2:57181864-57181964 - 58 2.24e-05 GCTTGGAGAT GCCGGGGATTGAACCCGGGAC CTCACACATG chr18:5163228-5163328 - 29 2.41e-05 AGCTGCAGAG GCCGAGGCCGCCCGGGAAGAC ACAGCGGGCC chr16:77644364-77644464 - 5 3.22e-05 AGACACGGAT GCCCGAGCGAGCACGCGCGCG CGCA chr3:107831859-107831959 - 40 3.45e-05 CAGCGAGACT GCCGGGCCTGTGGGGAAGGCC GAGAGCTGGG chr5:105792690-105792790 - 14 5.17e-05 CAGCAATGCC GGGCGGGCGTCATGAACTGGC CTGGGCGATG chr8:122720346-122720446 - 28 5.17e-05 GATGATGGCC GGGATTGAGGGCAGCGGCGCC TGGCTTTATC chr8:53680802-53680902 + 17 5.87e-05 GCTCGAAACA GCGAGAGGCGGCTCACGGTCC AGCAGCGCTC chr2:30667355-30667455 + 16 6.65e-05 TGGAGAAGGG GGACGCAGGCGAGCAGCAGCG TCTGAAACCT chr1:72243758-72243858 + 42 7.07e-05 ATCATACTCG GCGTGCGCGCTCGGGAACGCC GGGAGAGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSVKGGGRRGGVRGGRGRGVS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:160451288-160451388 3.4e-11 28_[+1]_51 chr13:59145620-59145720 3.3e-10 38_[+1]_41 chr8:11382621-11382721 5.3e-10 70_[+1]_9 chr5:125767792-125767892 6.7e-10 75_[-1]_4 chr16:33859790-33859890 1.3e-09 49_[-1]_30 chr3:10230628-10230728 2.4e-09 28_[+1]_51 chr3:34521520-34521620 5.2e-09 19_[+1]_60 chr12:86823913-86824013 4.5e-08 15_[-1]_64 chr2:21918206-21918306 5.2e-08 24_[-1]_55 chr11:65877095-65877195 6.1e-08 18_[-1]_61 chr13:99650220-99650320 1.1e-07 35_[+1]_44 chr2:116975541-116975641 1.2e-07 23_[+1]_56 chr4:33555771-33555871 2.1e-07 64_[-1]_15 chr17:45873418-45873518 2.4e-07 57_[+1]_22 chr11:61619735-61619835 2.7e-07 60_[+1]_19 chr11:98294396-98294496 3.5e-07 51_[-1]_28 chr2:157705298-157705398 3.5e-07 4_[-1]_75 chr11:79736633-79736733 3.9e-07 22_[+1]_57 chr13:56336931-56337031 3.9e-07 15_[+1]_64 chr13:93434940-93435040 4.4e-07 28_[+1]_51 chr1:132934793-132934893 7.1e-07 38_[-1]_41 chr10:41037761-41037861 7.1e-07 27_[+1]_52 chr4:106838820-106838920 8e-07 63_[-1]_16 chr8:74775486-74775586 8e-07 77_[+1]_2 chr9:48740172-48740272 8e-07 11_[+1]_68 chr2:118976195-118976295 8.9e-07 14_[-1]_65 chr18:77225417-77225517 8.9e-07 25_[+1]_54 chr18:55733211-55733311 8.9e-07 69_[-1]_10 chr2:167860526-167860626 1.1e-06 76_[+1]_3 chr14:25108648-25108748 1.1e-06 76_[+1]_3 chr4:91440337-91440437 1.4e-06 39_[-1]_40 chr14:100750025-10075012 1.4e-06 56_[+1]_23 chrX:7416304-7416404 1.5e-06 76_[-1]_3 chr8:17073721-17073821 1.7e-06 33_[-1]_46 chr9:34771902-34772002 2.6e-06 28_[+1]_51 chr4:103902032-103902132 2.6e-06 23_[+1]_56 chr15:103183765-10318386 3.4e-06 70_[+1]_9 chr7:132712112-132712212 3.8e-06 18_[+1]_61 chr2:76073103-76073203 3.8e-06 57_[-1]_22 chr2:66383693-66383793 3.8e-06 57_[-1]_22 chr18:69152699-69152799 5.5e-06 28_[-1]_51 chr10:42204779-42204879 6e-06 79_[+1] chr2:101932278-101932378 6.6e-06 10_[-1]_69 chr17:32091308-32091408 7.2e-06 37_[-1]_42 chr18:64588586-64588686 8.5e-06 43_[-1]_36 chr15:72810126-72810226 1e-05 78_[+1]_1 chr15:62903030-62903130 1.1e-05 52_[+1]_27 chr7:65417407-65417507 1.3e-05 79_[+1] chr11:114192930-11419303 1.3e-05 6_[+1]_73 chr3:17794465-17794565 1.9e-05 55_[-1]_24 chr8:120292236-120292336 1.9e-05 21_[-1]_58 chr2:57181864-57181964 2.2e-05 57_[-1]_22 chr18:5163228-5163328 2.4e-05 28_[-1]_51 chr16:77644364-77644464 3.2e-05 4_[-1]_75 chr3:107831859-107831959 3.5e-05 39_[-1]_40 chr5:105792690-105792790 5.2e-05 13_[-1]_66 chr8:122720346-122720446 5.2e-05 27_[-1]_52 chr8:53680802-53680902 5.9e-05 16_[+1]_63 chr2:30667355-30667455 6.7e-05 15_[+1]_64 chr1:72243758-72243858 7.1e-05 41_[+1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSVKGGGRRGGVRGGRGRGVS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSVKGGGRRGGVRGGRGRGVS width=21 seqs=60 chr2:160451288-160451388 ( 29) GGGGGGGCGGGGGGGGGGGAG 1 chr13:59145620-59145720 ( 39) GCGTGGGGGGCGGGGAGAGAG 1 chr8:11382621-11382721 ( 71) GGGGGGGGGGGGAGCAGAGAG 1 chr5:125767792-125767892 ( 76) GGGAGGGAGGGAAGGAGAGGG 1 chr16:33859790-33859890 ( 50) GCGGGGGGGGGGGGCGGAGAC 1 chr3:10230628-10230728 ( 29) GGGAGGGAAGGAGGGAGAGAG 1 chr3:34521520-34521620 ( 20) GGCTGAGGGGGCGCGGGGGAG 1 chr12:86823913-86824013 ( 16) GCAGGGGGCCGCGGGAGAGGG 1 chr2:21918206-21918306 ( 25) GCCTGGGGAAGCGGGCGGGGG 1 chr11:65877095-65877195 ( 19) GGGTTGGGGGGGTGCAGAGAG 1 chr13:99650220-99650320 ( 36) GGATGGGCAGTGTGGAGGGAG 1 chr2:116975541-116975641 ( 24) GGCCGGGCCGCGAGGGGAGCG 1 chr4:33555771-33555871 ( 65) GGATGGGGAGGCTCGGCGGGC 1 chr17:45873418-45873518 ( 58) GGCGGGGCAGGAGGAGCAGCC 1 chr11:61619735-61619835 ( 61) GGGGAGGACTGGGGGAGGGGG 1 chr11:98294396-98294496 ( 52) GCGCGGGAAGGCTGGACGGCG 1 chr2:157705298-157705398 ( 5) GCGTGGAGATGGGGAAGGGAG 1 chr11:79736633-79736733 ( 23) GGATGTGGAGGGAGGAGGGAC 1 chr13:56336931-56337031 ( 16) GGTTGGAGGGTGAGGAGGGGC 1 chr13:93434940-93435040 ( 29) GGGGAGGAGGGGTGGGGAAGG 1 chr1:132934793-132934893 ( 39) GCAGTGGGGGGCAGGGCAGCC 1 chr10:41037761-41037861 ( 28) GGGAGGGAGAGAAGGAGGAGG 1 chr4:106838820-106838920 ( 64) GCGGGGGAAGTGGCGGCGGCC 1 chr8:74775486-74775586 ( 78) GGGTAGAGAGGGACAGGAGGG 1 chr9:48740172-48740272 ( 12) GCTAGAGAGGGAGGAAGGGAG 1 chr2:118976195-118976295 ( 15) GGGTGGGGCGGAAAGAGAAGG 1 chr18:77225417-77225517 ( 26) GGCTGGGGAGTCTGAGAAGGC 1 chr18:55733211-55733311 ( 70) GGCTGCGAAGGCTGCAGAGGG 1 chr2:167860526-167860626 ( 77) GGGATGGAGGGGGCAGAAGAG 1 chr14:25108648-25108748 ( 77) GGAGAGGGGGGGAAGCGGGAG 1 chr4:91440337-91440437 ( 40) GGGTGGGGCAGGAAAGGGGGC 1 chr14:100750025-10075012 ( 57) GCAAGGGGTGGGCCGGGAGGC 1 chrX:7416304-7416404 ( 77) GCCTGAGGCTGGGCAAGGGAG 1 chr8:17073721-17073821 ( 34) GGGAGGAGGTGGAGAGAAGAG 1 chr9:34771902-34772002 ( 29) GCAGGAGGGAGAGAGGGAGCG 1 chr4:103902032-103902132 ( 24) GGCTGGAGAGTAGGGCCAGAC 1 chr15:103183765-10318386 ( 71) GGGTGGGCTGCACGCAGGGCG 1 chr7:132712112-132712212 ( 19) GGCTGGGACGGCACACGTGGC 1 chr2:76073103-76073203 ( 58) GGGGAGAAGGGCGGGAGATCG 1 chr2:66383693-66383793 ( 58) GGGGGAGCGACAGCGGAAGGG 1 chr18:69152699-69152799 ( 29) GCCTGAACCGCAGGGGAGGGG 1 chr10:42204779-42204879 ( 80) GCCGGAGAAGCGGCCGAGGAG 1 chr2:101932278-101932378 ( 11) GGCAGAGGGCTCTGCAGAGAG 1 chr17:32091308-32091408 ( 38) GCAATGGGGGCGGGCAGGAGG 1 chr18:64588586-64588686 ( 44) GCACAGAGGGTAGGGACAGGG 1 chr15:72810126-72810226 ( 79) GGTTTAGGGGCACGGGGAGAG 1 chr15:62903030-62903130 ( 53) GGCTGGACGGGAGCAGAGAGC 1 chr7:65417407-65417507 ( 80) GGAGGGGAACTGTGGCCAGGC 1 chr11:114192930-11419303 ( 7) GGTTGGGGAGCAACAAGATGG 1 chr3:17794465-17794565 ( 56) GGACGGCAGGCCGGAGGCGGC 1 chr8:120292236-120292336 ( 22) GCATGGAACAGCAGGCGTGGG 1 chr2:57181864-57181964 ( 58) GCCGGGGATTGAACCCGGGAC 1 chr18:5163228-5163328 ( 29) GCCGAGGCCGCCCGGGAAGAC 1 chr16:77644364-77644464 ( 5) GCCCGAGCGAGCACGCGCGCG 1 chr3:107831859-107831959 ( 40) GCCGGGCCTGTGGGGAAGGCC 1 chr5:105792690-105792790 ( 14) GGGCGGGCGTCATGAACTGGC 1 chr8:122720346-122720446 ( 28) GGGATTGAGGGCAGCGGCGCC 1 chr8:53680802-53680902 ( 17) GCGAGAGGCGGCTCACGGTCC 1 chr2:30667355-30667455 ( 16) GGACGCAGGCGAGCAGCAGCG 1 chr1:72243758-72243858 ( 42) GCGTGCGCGCTCGGGAACGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSVKGGGRRGGVRGGRGRGVS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.3486 E= 5.5e-029 -1255 -1255 213 -1255 -1255 74 143 -1255 -22 31 86 -202 -56 -97 39 56 -122 -1255 178 -144 -56 -219 168 -302 -56 -278 178 -1255 15 -8 108 -1255 -2 -32 108 -202 -122 -146 161 -144 -1255 -19 147 -70 15 39 81 -1255 15 -178 98 -56 -202 22 154 -1255 -2 -46 131 -1255 68 -61 86 -1255 -70 -46 154 -1255 83 -178 81 -244 -170 -1255 192 -244 37 3 86 -1255 -1255 68 147 -1255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSVKGGGRRGGVRGGRGRGVS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 60 E= 5.5e-029 0.000000 0.000000 1.000000 0.000000 0.000000 0.383333 0.616667 0.000000 0.233333 0.283333 0.416667 0.066667 0.183333 0.116667 0.300000 0.400000 0.116667 0.000000 0.783333 0.100000 0.183333 0.050000 0.733333 0.033333 0.183333 0.033333 0.783333 0.000000 0.300000 0.216667 0.483333 0.000000 0.266667 0.183333 0.483333 0.066667 0.116667 0.083333 0.700000 0.100000 0.000000 0.200000 0.633333 0.166667 0.300000 0.300000 0.400000 0.000000 0.300000 0.066667 0.450000 0.183333 0.066667 0.266667 0.666667 0.000000 0.266667 0.166667 0.566667 0.000000 0.433333 0.150000 0.416667 0.000000 0.166667 0.166667 0.666667 0.000000 0.483333 0.066667 0.400000 0.050000 0.083333 0.000000 0.866667 0.050000 0.350000 0.233333 0.416667 0.000000 0.000000 0.366667 0.633333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSVKGGGRRGGVRGGRGRGVS MEME-1 regular expression -------------------------------------------------------------------------------- G[GC][GCA][TG]GGG[GAC][GA]G[GC][GAC][GA][GC][GA][AG]G[AG]G[GAC][GC] -------------------------------------------------------------------------------- Time 529.17 secs. ******************************************************************************** ******************************************************************************** MOTIF KGCWGCWG MEME-2 width = 8 sites = 169 llr = 1373 E-value = 4.3e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGCWGCWG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::3::6: pos.-specific C ::a:28:: probability G 5a::82:a matrix T 5::7::4: bits 2.1 ** * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** ** * Entropy 1.1 ****** * (11.7 bits) 0.9 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGCAG consensus T ACGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr6:140481680-140481780 - 32 1.06e-05 CATCAGGGCA GGCTGCAG CACTGCGGGT chr2:21280767-21280867 + 50 1.06e-05 TCGGTTCCCA GGCTGCAG TGCTCTCAGG chr12:28817344-28817444 + 35 1.06e-05 ttagcaagct ggctgcag ctgctattca chr2:27321462-27321562 + 8 1.06e-05 TCCCCGC GGCTGCAG GTGCATGTTC chr11:17352021-17352121 - 42 1.06e-05 GGCACTAGCA GGCTGCAG GCAAGAACTC chr6:118341891-118341991 - 22 1.06e-05 CAGTCTGTCA GGCTGCAG CAGGTGGCTC chr14:64199703-64199803 + 1 1.06e-05 . GGCTGCAG GGCGCAGGAC chr15:88408619-88408719 + 85 1.06e-05 AAGCAAATGA GGCTGCAG GGCCTTGG chr19:10709014-10709114 - 68 1.06e-05 AGTTACAGCA GGCTGCAG CCTATTGGAA chr8:126920745-126920845 + 51 1.06e-05 TGGCTTGGGT GGCTGCAG AGGTAGAAGT chr2:70127494-70127594 - 82 1.06e-05 ACTGTGTAAA GGCTGCAG ATAGCTGCGC chr14:120441944-12044204 - 27 1.06e-05 GTCGAGGCAA GGCTGCAG CTTTATATTC chr13:83744828-83744928 + 33 1.06e-05 CAATGGCTGA GGCTGCAG GTTCGCCGCT chr19:54094419-54094519 + 30 1.06e-05 cagctggcct ggctgcag agttctgctc chr2:66383693-66383793 + 40 1.06e-05 GCATGTGGCT GGCTGCAG ACAATCTAAA chr11:33736383-33736483 - 6 1.06e-05 CGAGCCCCAC GGCTGCAG GGACA chr18:69152699-69152799 - 52 2.31e-05 AGCGCCTCCT TGCTGCAG AGGCCTGAAC chr2:118976195-118976295 + 88 2.31e-05 CTCCGGCACT TGCTGCAG TTCCC chrX:47461763-47461863 - 91 2.31e-05 AA TGCTGCAG TTTGAAGTGC chr2:161177674-161177774 + 22 2.31e-05 CTGGTCTTTT TGCTGCAG CAGGCAGAGG chr6:102998197-102998297 + 73 2.31e-05 GTAGAAATTG TGCTGCAG CACGTTTATG chr11:32027620-32027720 - 82 2.31e-05 CATATCACAG TGCTGCAG ACTGGCAGCA chr8:53680802-53680902 + 85 2.31e-05 GCTCACAGGC TGCTGCAG CAATGCGA chr18:42983277-42983377 - 11 2.31e-05 GGGGAAGGGA TGCTGCAG GATGCCCTGC chr2:166400901-166401001 - 66 2.31e-05 AATGGAAAAC TGCTGCAG AGCTGACCGC chr3:9974309-9974409 + 3 2.31e-05 GC TGCTGCAG CAGTGGGAAC chr3:24938501-24938601 - 74 2.31e-05 ACATAGGGTC TGCTGCAG TAATTGTGTG chr8:82079373-82079473 - 31 2.31e-05 CAGCAAGCAA TGCTGCAG TGCTGAAGGG chr13:34269280-34269380 - 31 2.31e-05 GGCCTAGCTG TGCTGCAG AATATATTAA chr8:58617468-58617568 + 45 2.31e-05 AGTTTAAATC TGCTGCAG TTTAGCACCA chr16:96533659-96533759 - 62 3.37e-05 ATTGTGCAGG GGCTGCTG ACTTGGTGGC chr18:38380140-38380240 - 20 3.37e-05 CATGGTGACT GGCTGCTG ATCTCTTGTC chr9:25389626-25389726 - 82 3.37e-05 CCCAGCCATT GGCTGCTG GCATCTTTAC chr6:113795230-113795330 - 30 3.37e-05 CAGCTCTCTA GGCTGCTG GGAGCTTGGC chr3:97100703-97100803 + 56 3.37e-05 AACTGCAGAG GGCTGCTG AAGCCGCATC chr18:56287870-56287970 + 83 3.37e-05 GCCACATCCA GGCTGCTG GCAACGGAAC chr5:77581240-77581340 + 80 3.37e-05 GAGGAGGCCA GGCTGCTG TTCTGCCTGA chr8:120292236-120292336 + 63 3.37e-05 CCTGCCAGCT GGCTGCTG TGTTGTTGCC chr13:105223079-10522317 - 88 3.37e-05 GATGT GGCTGCTG TGTCCCACAT chr3:84061902-84062002 + 53 5.68e-05 ctggctggtg tgctgctg ttgaaggcag chr6:28588650-28588750 + 26 5.68e-05 GAAGGCTTGT TGCTGCTG CTCTCTTCTC chr19:22248699-22248799 - 22 5.68e-05 CTACTTATTA TGCTGCTG ATGACCGCAG chr4:104650517-104650617 + 3 5.68e-05 AC TGCTGCTG CTGACTTCAA chr1:160534890-160534990 - 50 5.68e-05 TATTTTCTGT TGCTGCTG GCTATACAGC chr18:7524532-7524632 + 79 5.68e-05 AGAGAGAGCA GGCAGCAG CAGCTCACTG chr13:95092074-95092174 - 5 5.68e-05 TGCCCCAGTT TGCTGCTG GTTT chr7:132712112-132712212 - 10 5.68e-05 GTCCCAGCCA GGCAGCAG CAGCAGCAG chr15:59197652-59197752 + 80 5.68e-05 ATTTATAACC TGCTGCTG AGCCGAGGCC chr7:74391430-74391530 + 90 5.68e-05 AGCCAGTAGA GGCAGCAG GAA chr3:130385768-130385868 - 21 5.68e-05 CAGAGCTGCC TGCTGCTG AGGCATGAAC chr16:69057323-69057423 - 26 5.68e-05 ATGTTACATT GGCAGCAG AATTACAGAT chr13:53877740-53877840 - 72 5.68e-05 AGCCTTGACT GGCAGCAG GCCAAGTTTG chr1:33946921-33947021 - 90 5.68e-05 TCT GGCAGCAG CTAGGTCTCA chr12:6254932-6255032 + 3 5.68e-05 TC TGCTGCTG AGAGACTGAC chr1:55454019-55454119 - 81 5.68e-05 ATCGCAGCTG GGCAGCAG AGCTTGCCAG chr1:192501999-192502099 + 16 5.68e-05 CAGTCATGGT TGCTGCTG GCACAGATCC chr17:66861446-66861546 - 56 5.68e-05 GTTAGCATCT GGCAGCAG CATCCTGCTG chr15:59349404-59349504 + 25 5.68e-05 actggccgct ggcagcag ctgggaacat chr17:48976462-48976562 - 19 5.68e-05 AGTTGACAGA GGCAGCAG GGGATCATTA chr2:101932278-101932378 + 54 5.68e-05 TGTAGAATTC TGCTGCTG GCCTGCCTGC chr14:13357974-13358074 + 92 5.68e-05 TGACAACAAG GGCAGCAG C chr10:39672660-39672760 - 59 5.68e-05 GCTTCCCACT GGCAGCAG CTGAAGCAGC chr8:115433423-115433523 - 40 5.68e-05 CAGTAGGAGT GGCAGCAG AAACACTGGC chr14:100750025-10075012 + 90 5.68e-05 TGAAGTCAGA GGCAGCAG GGA chr18:75607580-75607680 - 7 5.68e-05 CAACCCCACT GGCAGCAG TGACTC chr2:77589412-77589512 + 84 5.68e-05 GCTCAGGAGG GGCAGCAG CTGCGGCAA chr2:167860526-167860626 + 41 6.94e-05 AAAGACTGAG TGCAGCAG AGGCAAGGTG chr1:78760920-78761020 + 76 6.94e-05 TTATTAGAGA TGCAGCAG TCTTGTCAAC chr7:111998584-111998684 + 49 8.00e-05 tttgtttgat ggcagctg tcatatccct chr1:88474447-88474547 + 65 8.00e-05 GCCGATTGGA GGCAGCTG GAAGCAGCTG chr11:9705222-9705322 - 52 8.00e-05 CCTTCTCTGA GGCAGCTG CTGGCAAGTT chr17:73649338-73649438 + 67 8.00e-05 CTGGGGAAGA GGCAGCTG ACAGCCACGA chr12:53566613-53566713 + 26 8.00e-05 TTCTGTGCCT GGCAGCTG GTGATGCATT chr2:68531078-68531178 - 56 8.00e-05 TGAAGGCAGA GGCAGCTG TGTTCTCATA chr12:5747366-5747466 + 18 8.00e-05 CAGCAGATCT GGCAGCTG TGGAGTTTGA chrX:143906596-143906696 - 69 8.00e-05 TTTGGAGTCT GGCAGCTG CGAGGCCTGG chr2:12887108-12887208 - 8 8.00e-05 GCAAGAATCA GGCAGCTG AATTTGT chr2:131686687-131686787 + 84 8.00e-05 ACAAAGCCTG GGCAGCTG GCCAAGCCA chr1:120748944-120749044 - 89 8.00e-05 GAGA GGCAGCTG CAGGGCAATT chr9:28354852-28354952 + 17 1.01e-04 TAACCTCTGA GGCTGGAG GGGGCTGTCC chr7:138493566-138493666 - 67 1.01e-04 CCCAGATTCA GGCTCCAG TCCCCAGCCT chr4:66482425-66482525 + 78 1.01e-04 TTCCTGACAG GGCTCCAG TTTTTCATCT chr10:25642079-25642179 - 34 1.01e-04 CTCCAGCAGA GGCTGGAG ATGCTGAGAG chr12:29015456-29015556 - 59 1.01e-04 AGCCTTCCCT GGCTGGAG TTAATTAGAA chr12:53869894-53869994 - 13 1.01e-04 GGAACCTAAT GGCTGGAG AATGAATATA chr4:133298895-133298995 - 86 1.01e-04 TCCATTT GGCTGGAG CAGAGGGTTC chr11:108150385-10815048 - 60 1.01e-04 GCCAGCCCTG GGCTCCAG AGACAAAGGG chr15:12245574-12245674 + 22 1.01e-04 agagcccatg ggctggag ttatgggcat chr18:82531708-82531808 - 87 1.01e-04 CAGTGG GGCTGGAG GTGGACTGCG chr4:33784636-33784736 - 32 1.01e-04 AATTAGTGTG GGCTGGAG CTCAAGCCAT chr16:40194806-40194906 + 8 1.01e-04 AGAGCCA GGCTCCAG GGAGTGTGTG chr1:25635785-25635885 + 64 1.01e-04 ctacatatgc ggctggag ccgtgggtac chr14:80263183-80263283 + 28 1.01e-04 GATGCAGATA GGCTGGAG CGTTACTTTT chr14:67135885-67135985 - 30 1.01e-04 TCTTAGCTAG GGCTCCAG CAGCTGCGCA chr10:39209514-39209614 - 66 1.01e-04 TCAAAGACCT GGCTCCAG ATGCATGGGG chr12:71628707-71628807 + 43 1.01e-04 GGACTTGGGT GGCTGGAG CCGGTCCTGA chr2:103670075-103670175 + 60 1.01e-04 TCCTAAGCAG GGCTCCAG TGTACAGCAT chr5:39178513-39178613 - 3 1.01e-04 CTGCAACAAT GGCTGGAG AG chr2:142561026-142561126 - 87 1.14e-04 AAAGGA TGCAGCTG AATGCGTATT chr9:53158374-53158474 + 47 1.14e-04 CTATAATCTG TGCAGCTG AACTCTGTAG chr5:4961956-4962056 - 51 1.14e-04 TTCAATCCAG TGCAGCTG AGCCTCCAGC chr18:5163228-5163328 + 53 1.14e-04 CCTCGGCCTC TGCAGCTG CTTCTGGGGC chr16:9677951-9678051 + 61 1.14e-04 CAGAATTAAA TGCAGCTG AAGAAAAAAG chr14:78383102-78383202 - 68 1.14e-04 GAGTGCTGGA TGCAGCTG TGCATCCTGA chr2:12844501-12844601 + 8 1.14e-04 GGAGTCA TGCAGCTG TCCCCAAATT chr2:127961083-127961183 - 44 1.14e-04 CTGTAATCCC TGCAGCTG GCCAGCAATT chr5:40690322-40690422 + 46 1.14e-04 GTTTTAATCC TGCAGCTG TGTTTCAATT chr7:68085328-68085428 + 39 1.14e-04 TCCCAGTCCC TGCAGCTG CTTGGTCTTT chr3:100610970-100611070 + 86 1.14e-04 TTAGTAGGAT TGCAGCTG CAAATGG chr14:101229143-10122924 - 63 1.14e-04 GGGAAAGCTC TGCAGCTG GGATGCTCCC chr6:129229859-129229959 - 23 1.14e-04 TGGGAAATTG TGCAGCTG CTAGGATCAC chr13:25986221-25986321 - 62 1.39e-04 GGCAGACAAC TGCTCCAG AGTAGTGTGG chr1:132934793-132934893 - 75 1.39e-04 CTCCTCATCC TGCTCCAG GATGCTGGGC chr16:52191317-52191417 + 19 1.39e-04 GCCTTTCCAC TGCTCCAG AGTTCAGCTT chr15:64268793-64268893 - 88 1.39e-04 AGTCA TGCTGGAG ACCTTGTACC chr1:96685566-96685666 - 87 1.39e-04 TTACTC TGCTCCAG AAGAAGGCCA chr18:56312031-56312131 + 13 1.39e-04 CCCCCTGATA TGCTGGAG TTCATCAAGG chr9:45570348-45570448 - 85 1.39e-04 AAGCTGCA TGCTGGAG GACCCGGGAG chr9:57967417-57967517 - 46 1.39e-04 GAGACAAGGA TGCTCCAG GCTATAAGGC chr16:12229915-12230015 - 24 1.39e-04 TGACCCACTG TGCTCCAG TATAGAGTCA chr10:118781840-11878194 + 76 1.39e-04 GCCTCTGCAC TGCTCCAG AAAAATATGT chr1:116286594-116286694 - 59 1.39e-04 TTCTTTTCAT TGCTCCAG TCCACTTTCC chr6:36605817-36605917 + 29 1.39e-04 AATTAATCAG TGCTGGAG AGACGTCCTG chr3:132746966-132747066 - 7 1.39e-04 AGCTGTAGAA TGCTGGAG AAACAG chr8:91565837-91565937 - 66 1.39e-04 GGACTAAGAG TGCTGGAG TATCAGCGCC chr3:85049701-85049801 + 73 1.39e-04 GGGGTGGTGC TGCTGGAG ACACAGATGA chr10:16171128-16171228 - 47 1.39e-04 AAATTATGCA TGCTGGAG AAATCCATAT chr6:39005608-39005708 - 81 1.39e-04 GAAAGCTGCT TGCTCCAG CGCTTTTTCC chr14:13340696-13340796 + 5 1.39e-04 TTGG TGCTCCAG GCTTTCTAAC chr16:88174277-88174377 + 23 1.39e-04 TTCTTTCTGA TGCTCCAG TAGCATTCAG chr3:78919692-78919792 + 44 1.39e-04 AACATCGTTT TGCTCCAG TCTATGCTCA chr5:119916392-119916492 - 2 1.60e-04 GCTCTGCAGA GGCTGGTG C chr14:28948883-28948983 + 79 1.60e-04 CTGAGGCGCT GGCTGGTG ctctctctct chr11:31713887-31713987 + 7 1.60e-04 GAAGCA GGCTGGTG CCCTGGCTGT chr2:21918206-21918306 + 1 1.60e-04 . GGCTCCTG GCTCCAAAAC chr12:51736691-51736791 + 3 1.60e-04 TC GGCTCCTG AAAAAGTTTA chr14:25108648-25108748 + 34 1.60e-04 CTGTCTCTGG GGCTGGTG CAGCAGTCAG chr15:24566902-24567002 + 3 1.60e-04 AG GGCTGGTG CTGGTTTCTC chr1:13183337-13183437 - 37 1.60e-04 GAAGAGCAGG GGCTGGTG AGCTCTCAGC chr18:73963276-73963376 + 12 2.06e-04 GACCAAGGAC TGCTGGTG CAGACAGTGC chr15:44348484-44348584 + 83 2.06e-04 TAGCAAATGT GGCACCAG CTGAGGTTGA chr15:89903011-89903111 - 6 2.06e-04 AAGACTGATT GGCACCAG AAAGG chr12:8437124-8437224 + 37 2.06e-04 GTTAGTACAG TGCTCCTG CTGCTTTGGA chr5:18478328-18478428 - 89 2.06e-04 CTGC TGCTCCTG GTCGATCCTG chr6:43363071-43363171 + 41 2.06e-04 aagtgcactg tgctcctg ggacccagca chr11:81040107-81040207 + 72 2.06e-04 AGCTCTGGCT GGCAGGAG ATGCCAGGCT chr3:34521520-34521620 + 56 2.06e-04 AATATCACTT TGCTCCTG AATTCATGAT chr9:101518061-101518161 - 71 2.06e-04 GAGAGCTGGA GGCAGGAG GATGGGGTTC chr1:51628149-51628249 + 76 2.06e-04 GTGTCTGCTT TGCTCCTG TGTGGGAGGT chr4:106838820-106838920 - 12 2.31e-04 CGCGCGGGTC TGCAGGAG GGGTGGAGAG chr12:5443250-5443350 - 77 2.31e-04 TTTGAAAGCA TGCACCAG CTAGTTTCTC chr3:82636620-82636720 - 71 2.31e-04 GCATCTGGTA TGCAGGAG ACAGGCATGT chr2:19785892-19785992 - 36 2.31e-04 CTTGAATGAT TGCAGGAG AAATACTCAA chr17:32091308-32091408 + 3 2.61e-04 AC GGCTGCCG ATGGGAAGGT chr11:33740084-33740184 - 48 2.61e-04 CACAGATGGT GGCAGGTG ACTGGGAAAA chr2:61533178-61533278 - 36 2.72e-04 TCATTGGTTT GGCTCGAG GCCTTTGGCT chr10:87665950-87666050 + 60 3.08e-04 AATGGCACTA TGCTGCCG TGTGATCCTA chr10:98147216-98147316 - 73 3.08e-04 ACGGGTCTGT TGCTGCCG TTAAAAATGC chr9:94582308-94582408 + 40 3.31e-04 GTATGATGAC GGCTCGTG CTATAATCCA chr15:103183765-10318386 - 36 3.40e-04 TGCAGCCAAA GGCAGCCG AGCACAGCTG chr17:7286301-7286401 - 69 3.73e-04 TGGAACTGAG TGCAGCCG TGCAAACGCT chr2:68281188-68281288 - 86 3.86e-04 AGCTCTT TGCACGAG TGGCTTAGCA chr4:13844366-13844466 - 25 4.14e-04 CACATTCCCT GGCTCCCG TCCAGAAACA chr4:149979915-149980015 + 10 4.14e-04 GTGAGTGGT GGCACGTG GGCTCCCCCA chr18:25542328-25542428 + 26 4.48e-04 CAGCCTTTCC TGCTCCCG TGTCTGTGGG chr2:75481699-75481799 - 85 4.48e-04 GTCTCGAC TGCTCCCG TTGTCATGCT chr3:57919322-57919422 + 60 4.48e-04 ACAATTAGGC TGCACGTG CAGAATGGTT chr17:49952001-49952101 + 26 4.48e-04 TCTGTGTGTG TGCACGTG CTTGAAAACA chr16:94743571-94743671 + 39 4.96e-04 TAGAAACCAG GGCTGCGG TTGAAGGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:140481680-140481780 1.1e-05 31_[-2]_61 chr2:21280767-21280867 1.1e-05 49_[+2]_43 chr12:28817344-28817444 1.1e-05 34_[+2]_58 chr2:27321462-27321562 1.1e-05 7_[+2]_85 chr11:17352021-17352121 1.1e-05 41_[-2]_51 chr6:118341891-118341991 1.1e-05 21_[-2]_71 chr14:64199703-64199803 1.1e-05 [+2]_92 chr15:88408619-88408719 1.1e-05 84_[+2]_8 chr19:10709014-10709114 1.1e-05 67_[-2]_25 chr8:126920745-126920845 1.1e-05 50_[+2]_42 chr2:70127494-70127594 1.1e-05 81_[-2]_11 chr14:120441944-12044204 1.1e-05 26_[-2]_66 chr13:83744828-83744928 1.1e-05 32_[+2]_60 chr19:54094419-54094519 1.1e-05 29_[+2]_63 chr2:66383693-66383793 1.1e-05 39_[+2]_53 chr11:33736383-33736483 1.1e-05 5_[-2]_87 chr18:69152699-69152799 2.3e-05 51_[-2]_41 chr2:118976195-118976295 2.3e-05 87_[+2]_5 chrX:47461763-47461863 2.3e-05 90_[-2]_2 chr2:161177674-161177774 2.3e-05 21_[+2]_71 chr6:102998197-102998297 2.3e-05 72_[+2]_20 chr11:32027620-32027720 2.3e-05 81_[-2]_11 chr8:53680802-53680902 2.3e-05 84_[+2]_8 chr18:42983277-42983377 2.3e-05 10_[-2]_82 chr2:166400901-166401001 2.3e-05 65_[-2]_27 chr3:9974309-9974409 2.3e-05 2_[+2]_90 chr3:24938501-24938601 2.3e-05 73_[-2]_19 chr8:82079373-82079473 2.3e-05 30_[-2]_62 chr13:34269280-34269380 2.3e-05 30_[-2]_62 chr8:58617468-58617568 2.3e-05 44_[+2]_48 chr16:96533659-96533759 3.4e-05 61_[-2]_31 chr18:38380140-38380240 3.4e-05 19_[-2]_73 chr9:25389626-25389726 3.4e-05 81_[-2]_11 chr6:113795230-113795330 3.4e-05 29_[-2]_63 chr3:97100703-97100803 3.4e-05 55_[+2]_37 chr18:56287870-56287970 3.4e-05 82_[+2]_10 chr5:77581240-77581340 3.4e-05 79_[+2]_13 chr8:120292236-120292336 3.4e-05 62_[+2]_30 chr13:105223079-10522317 3.4e-05 87_[-2]_5 chr3:84061902-84062002 5.7e-05 52_[+2]_40 chr6:28588650-28588750 5.7e-05 25_[+2]_67 chr19:22248699-22248799 5.7e-05 21_[-2]_71 chr4:104650517-104650617 5.7e-05 2_[+2]_90 chr1:160534890-160534990 5.7e-05 49_[-2]_43 chr18:7524532-7524632 5.7e-05 78_[+2]_14 chr13:95092074-95092174 5.7e-05 4_[-2]_88 chr7:132712112-132712212 5.7e-05 9_[-2]_83 chr15:59197652-59197752 5.7e-05 79_[+2]_13 chr7:74391430-74391530 5.7e-05 89_[+2]_3 chr3:130385768-130385868 5.7e-05 20_[-2]_72 chr16:69057323-69057423 5.7e-05 25_[-2]_67 chr13:53877740-53877840 5.7e-05 71_[-2]_21 chr1:33946921-33947021 5.7e-05 89_[-2]_3 chr12:6254932-6255032 5.7e-05 2_[+2]_90 chr1:55454019-55454119 5.7e-05 80_[-2]_12 chr1:192501999-192502099 5.7e-05 15_[+2]_77 chr17:66861446-66861546 5.7e-05 55_[-2]_37 chr15:59349404-59349504 5.7e-05 24_[+2]_68 chr17:48976462-48976562 5.7e-05 18_[-2]_74 chr2:101932278-101932378 5.7e-05 53_[+2]_39 chr14:13357974-13358074 5.7e-05 91_[+2]_1 chr10:39672660-39672760 5.7e-05 58_[-2]_34 chr8:115433423-115433523 5.7e-05 39_[-2]_53 chr14:100750025-10075012 5.7e-05 89_[+2]_3 chr18:75607580-75607680 5.7e-05 6_[-2]_86 chr2:77589412-77589512 5.7e-05 83_[+2]_9 chr2:167860526-167860626 6.9e-05 40_[+2]_52 chr1:78760920-78761020 6.9e-05 75_[+2]_17 chr7:111998584-111998684 8e-05 48_[+2]_44 chr1:88474447-88474547 8e-05 64_[+2]_28 chr11:9705222-9705322 8e-05 51_[-2]_41 chr17:73649338-73649438 8e-05 66_[+2]_26 chr12:53566613-53566713 8e-05 25_[+2]_67 chr2:68531078-68531178 8e-05 55_[-2]_37 chr12:5747366-5747466 8e-05 17_[+2]_75 chrX:143906596-143906696 8e-05 68_[-2]_24 chr2:12887108-12887208 8e-05 7_[-2]_85 chr2:131686687-131686787 8e-05 83_[+2]_9 chr1:120748944-120749044 8e-05 88_[-2]_4 chr9:28354852-28354952 0.0001 16_[+2]_76 chr7:138493566-138493666 0.0001 66_[-2]_26 chr4:66482425-66482525 0.0001 77_[+2]_15 chr10:25642079-25642179 0.0001 33_[-2]_59 chr12:29015456-29015556 0.0001 58_[-2]_34 chr12:53869894-53869994 0.0001 12_[-2]_80 chr4:133298895-133298995 0.0001 85_[-2]_7 chr11:108150385-10815048 0.0001 59_[-2]_33 chr15:12245574-12245674 0.0001 21_[+2]_71 chr18:82531708-82531808 0.0001 86_[-2]_6 chr4:33784636-33784736 0.0001 31_[-2]_61 chr16:40194806-40194906 0.0001 7_[+2]_85 chr1:25635785-25635885 0.0001 63_[+2]_29 chr14:80263183-80263283 0.0001 27_[+2]_65 chr14:67135885-67135985 0.0001 29_[-2]_63 chr10:39209514-39209614 0.0001 65_[-2]_27 chr12:71628707-71628807 0.0001 42_[+2]_50 chr2:103670075-103670175 0.0001 59_[+2]_33 chr5:39178513-39178613 0.0001 2_[-2]_90 chr2:142561026-142561126 0.00011 86_[-2]_6 chr9:53158374-53158474 0.00011 46_[+2]_46 chr5:4961956-4962056 0.00011 50_[-2]_42 chr18:5163228-5163328 0.00011 52_[+2]_40 chr16:9677951-9678051 0.00011 60_[+2]_32 chr14:78383102-78383202 0.00011 67_[-2]_25 chr2:12844501-12844601 0.00011 7_[+2]_85 chr2:127961083-127961183 0.00011 43_[-2]_49 chr5:40690322-40690422 0.00011 45_[+2]_47 chr7:68085328-68085428 0.00011 38_[+2]_54 chr3:100610970-100611070 0.00011 85_[+2]_7 chr14:101229143-10122924 0.00011 62_[-2]_30 chr6:129229859-129229959 0.00011 22_[-2]_70 chr13:25986221-25986321 0.00014 61_[-2]_31 chr1:132934793-132934893 0.00014 74_[-2]_18 chr16:52191317-52191417 0.00014 18_[+2]_74 chr15:64268793-64268893 0.00014 87_[-2]_5 chr1:96685566-96685666 0.00014 86_[-2]_6 chr18:56312031-56312131 0.00014 12_[+2]_80 chr9:45570348-45570448 0.00014 84_[-2]_8 chr9:57967417-57967517 0.00014 45_[-2]_47 chr16:12229915-12230015 0.00014 23_[-2]_69 chr10:118781840-11878194 0.00014 75_[+2]_17 chr1:116286594-116286694 0.00014 58_[-2]_34 chr6:36605817-36605917 0.00014 28_[+2]_64 chr3:132746966-132747066 0.00014 6_[-2]_86 chr8:91565837-91565937 0.00014 65_[-2]_27 chr3:85049701-85049801 0.00014 72_[+2]_20 chr10:16171128-16171228 0.00014 46_[-2]_46 chr6:39005608-39005708 0.00014 80_[-2]_12 chr14:13340696-13340796 0.00014 4_[+2]_88 chr16:88174277-88174377 0.00014 22_[+2]_70 chr3:78919692-78919792 0.00014 43_[+2]_49 chr5:119916392-119916492 0.00016 1_[-2]_91 chr14:28948883-28948983 0.00016 78_[+2]_14 chr11:31713887-31713987 0.00016 6_[+2]_86 chr2:21918206-21918306 0.00016 [+2]_92 chr12:51736691-51736791 0.00016 2_[+2]_90 chr14:25108648-25108748 0.00016 33_[+2]_59 chr15:24566902-24567002 0.00016 2_[+2]_90 chr1:13183337-13183437 0.00016 36_[-2]_56 chr18:73963276-73963376 0.00021 11_[+2]_81 chr15:44348484-44348584 0.00021 82_[+2]_10 chr15:89903011-89903111 0.00021 5_[-2]_87 chr12:8437124-8437224 0.00021 36_[+2]_56 chr5:18478328-18478428 0.00021 88_[-2]_4 chr6:43363071-43363171 0.00021 40_[+2]_52 chr11:81040107-81040207 0.00021 71_[+2]_21 chr3:34521520-34521620 0.00021 55_[+2]_37 chr9:101518061-101518161 0.00021 70_[-2]_22 chr1:51628149-51628249 0.00021 75_[+2]_17 chr4:106838820-106838920 0.00023 11_[-2]_81 chr12:5443250-5443350 0.00023 76_[-2]_16 chr3:82636620-82636720 0.00023 70_[-2]_22 chr2:19785892-19785992 0.00023 35_[-2]_57 chr17:32091308-32091408 0.00026 2_[+2]_90 chr11:33740084-33740184 0.00026 47_[-2]_45 chr2:61533178-61533278 0.00027 35_[-2]_57 chr10:87665950-87666050 0.00031 59_[+2]_33 chr10:98147216-98147316 0.00031 72_[-2]_20 chr9:94582308-94582408 0.00033 39_[+2]_53 chr15:103183765-10318386 0.00034 35_[-2]_57 chr17:7286301-7286401 0.00037 68_[-2]_24 chr2:68281188-68281288 0.00039 85_[-2]_7 chr4:13844366-13844466 0.00041 24_[-2]_68 chr4:149979915-149980015 0.00041 9_[+2]_83 chr18:25542328-25542428 0.00045 25_[+2]_67 chr2:75481699-75481799 0.00045 84_[-2]_8 chr3:57919322-57919422 0.00045 59_[+2]_33 chr17:49952001-49952101 0.00045 25_[+2]_67 chr16:94743571-94743671 0.0005 38_[+2]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGCWGCWG width=8 seqs=169 chr6:140481680-140481780 ( 32) GGCTGCAG 1 chr2:21280767-21280867 ( 50) GGCTGCAG 1 chr12:28817344-28817444 ( 35) GGCTGCAG 1 chr2:27321462-27321562 ( 8) GGCTGCAG 1 chr11:17352021-17352121 ( 42) GGCTGCAG 1 chr6:118341891-118341991 ( 22) GGCTGCAG 1 chr14:64199703-64199803 ( 1) GGCTGCAG 1 chr15:88408619-88408719 ( 85) GGCTGCAG 1 chr19:10709014-10709114 ( 68) GGCTGCAG 1 chr8:126920745-126920845 ( 51) GGCTGCAG 1 chr2:70127494-70127594 ( 82) GGCTGCAG 1 chr14:120441944-12044204 ( 27) GGCTGCAG 1 chr13:83744828-83744928 ( 33) GGCTGCAG 1 chr19:54094419-54094519 ( 30) GGCTGCAG 1 chr2:66383693-66383793 ( 40) GGCTGCAG 1 chr11:33736383-33736483 ( 6) GGCTGCAG 1 chr18:69152699-69152799 ( 52) TGCTGCAG 1 chr2:118976195-118976295 ( 88) TGCTGCAG 1 chrX:47461763-47461863 ( 91) TGCTGCAG 1 chr2:161177674-161177774 ( 22) TGCTGCAG 1 chr6:102998197-102998297 ( 73) TGCTGCAG 1 chr11:32027620-32027720 ( 82) TGCTGCAG 1 chr8:53680802-53680902 ( 85) TGCTGCAG 1 chr18:42983277-42983377 ( 11) TGCTGCAG 1 chr2:166400901-166401001 ( 66) TGCTGCAG 1 chr3:9974309-9974409 ( 3) TGCTGCAG 1 chr3:24938501-24938601 ( 74) TGCTGCAG 1 chr8:82079373-82079473 ( 31) TGCTGCAG 1 chr13:34269280-34269380 ( 31) TGCTGCAG 1 chr8:58617468-58617568 ( 45) TGCTGCAG 1 chr16:96533659-96533759 ( 62) GGCTGCTG 1 chr18:38380140-38380240 ( 20) GGCTGCTG 1 chr9:25389626-25389726 ( 82) GGCTGCTG 1 chr6:113795230-113795330 ( 30) GGCTGCTG 1 chr3:97100703-97100803 ( 56) GGCTGCTG 1 chr18:56287870-56287970 ( 83) GGCTGCTG 1 chr5:77581240-77581340 ( 80) GGCTGCTG 1 chr8:120292236-120292336 ( 63) GGCTGCTG 1 chr13:105223079-10522317 ( 88) GGCTGCTG 1 chr3:84061902-84062002 ( 53) TGCTGCTG 1 chr6:28588650-28588750 ( 26) TGCTGCTG 1 chr19:22248699-22248799 ( 22) TGCTGCTG 1 chr4:104650517-104650617 ( 3) TGCTGCTG 1 chr1:160534890-160534990 ( 50) TGCTGCTG 1 chr18:7524532-7524632 ( 79) GGCAGCAG 1 chr13:95092074-95092174 ( 5) TGCTGCTG 1 chr7:132712112-132712212 ( 10) GGCAGCAG 1 chr15:59197652-59197752 ( 80) TGCTGCTG 1 chr7:74391430-74391530 ( 90) GGCAGCAG 1 chr3:130385768-130385868 ( 21) TGCTGCTG 1 chr16:69057323-69057423 ( 26) GGCAGCAG 1 chr13:53877740-53877840 ( 72) GGCAGCAG 1 chr1:33946921-33947021 ( 90) GGCAGCAG 1 chr12:6254932-6255032 ( 3) TGCTGCTG 1 chr1:55454019-55454119 ( 81) GGCAGCAG 1 chr1:192501999-192502099 ( 16) TGCTGCTG 1 chr17:66861446-66861546 ( 56) GGCAGCAG 1 chr15:59349404-59349504 ( 25) GGCAGCAG 1 chr17:48976462-48976562 ( 19) GGCAGCAG 1 chr2:101932278-101932378 ( 54) TGCTGCTG 1 chr14:13357974-13358074 ( 92) GGCAGCAG 1 chr10:39672660-39672760 ( 59) GGCAGCAG 1 chr8:115433423-115433523 ( 40) GGCAGCAG 1 chr14:100750025-10075012 ( 90) GGCAGCAG 1 chr18:75607580-75607680 ( 7) GGCAGCAG 1 chr2:77589412-77589512 ( 84) GGCAGCAG 1 chr2:167860526-167860626 ( 41) TGCAGCAG 1 chr1:78760920-78761020 ( 76) TGCAGCAG 1 chr7:111998584-111998684 ( 49) GGCAGCTG 1 chr1:88474447-88474547 ( 65) GGCAGCTG 1 chr11:9705222-9705322 ( 52) GGCAGCTG 1 chr17:73649338-73649438 ( 67) GGCAGCTG 1 chr12:53566613-53566713 ( 26) GGCAGCTG 1 chr2:68531078-68531178 ( 56) GGCAGCTG 1 chr12:5747366-5747466 ( 18) GGCAGCTG 1 chrX:143906596-143906696 ( 69) GGCAGCTG 1 chr2:12887108-12887208 ( 8) GGCAGCTG 1 chr2:131686687-131686787 ( 84) GGCAGCTG 1 chr1:120748944-120749044 ( 89) GGCAGCTG 1 chr9:28354852-28354952 ( 17) GGCTGGAG 1 chr7:138493566-138493666 ( 67) GGCTCCAG 1 chr4:66482425-66482525 ( 78) GGCTCCAG 1 chr10:25642079-25642179 ( 34) GGCTGGAG 1 chr12:29015456-29015556 ( 59) GGCTGGAG 1 chr12:53869894-53869994 ( 13) GGCTGGAG 1 chr4:133298895-133298995 ( 86) GGCTGGAG 1 chr11:108150385-10815048 ( 60) GGCTCCAG 1 chr15:12245574-12245674 ( 22) GGCTGGAG 1 chr18:82531708-82531808 ( 87) GGCTGGAG 1 chr4:33784636-33784736 ( 32) GGCTGGAG 1 chr16:40194806-40194906 ( 8) GGCTCCAG 1 chr1:25635785-25635885 ( 64) GGCTGGAG 1 chr14:80263183-80263283 ( 28) GGCTGGAG 1 chr14:67135885-67135985 ( 30) GGCTCCAG 1 chr10:39209514-39209614 ( 66) GGCTCCAG 1 chr12:71628707-71628807 ( 43) GGCTGGAG 1 chr2:103670075-103670175 ( 60) GGCTCCAG 1 chr5:39178513-39178613 ( 3) GGCTGGAG 1 chr2:142561026-142561126 ( 87) TGCAGCTG 1 chr9:53158374-53158474 ( 47) TGCAGCTG 1 chr5:4961956-4962056 ( 51) TGCAGCTG 1 chr18:5163228-5163328 ( 53) TGCAGCTG 1 chr16:9677951-9678051 ( 61) TGCAGCTG 1 chr14:78383102-78383202 ( 68) TGCAGCTG 1 chr2:12844501-12844601 ( 8) TGCAGCTG 1 chr2:127961083-127961183 ( 44) TGCAGCTG 1 chr5:40690322-40690422 ( 46) TGCAGCTG 1 chr7:68085328-68085428 ( 39) TGCAGCTG 1 chr3:100610970-100611070 ( 86) TGCAGCTG 1 chr14:101229143-10122924 ( 63) TGCAGCTG 1 chr6:129229859-129229959 ( 23) TGCAGCTG 1 chr13:25986221-25986321 ( 62) TGCTCCAG 1 chr1:132934793-132934893 ( 75) TGCTCCAG 1 chr16:52191317-52191417 ( 19) TGCTCCAG 1 chr15:64268793-64268893 ( 88) TGCTGGAG 1 chr1:96685566-96685666 ( 87) TGCTCCAG 1 chr18:56312031-56312131 ( 13) TGCTGGAG 1 chr9:45570348-45570448 ( 85) TGCTGGAG 1 chr9:57967417-57967517 ( 46) TGCTCCAG 1 chr16:12229915-12230015 ( 24) TGCTCCAG 1 chr10:118781840-11878194 ( 76) TGCTCCAG 1 chr1:116286594-116286694 ( 59) TGCTCCAG 1 chr6:36605817-36605917 ( 29) TGCTGGAG 1 chr3:132746966-132747066 ( 7) TGCTGGAG 1 chr8:91565837-91565937 ( 66) TGCTGGAG 1 chr3:85049701-85049801 ( 73) TGCTGGAG 1 chr10:16171128-16171228 ( 47) TGCTGGAG 1 chr6:39005608-39005708 ( 81) TGCTCCAG 1 chr14:13340696-13340796 ( 5) TGCTCCAG 1 chr16:88174277-88174377 ( 23) TGCTCCAG 1 chr3:78919692-78919792 ( 44) TGCTCCAG 1 chr5:119916392-119916492 ( 2) GGCTGGTG 1 chr14:28948883-28948983 ( 79) GGCTGGTG 1 chr11:31713887-31713987 ( 7) GGCTGGTG 1 chr2:21918206-21918306 ( 1) GGCTCCTG 1 chr12:51736691-51736791 ( 3) GGCTCCTG 1 chr14:25108648-25108748 ( 34) GGCTGGTG 1 chr15:24566902-24567002 ( 3) GGCTGGTG 1 chr1:13183337-13183437 ( 37) GGCTGGTG 1 chr18:73963276-73963376 ( 12) TGCTGGTG 1 chr15:44348484-44348584 ( 83) GGCACCAG 1 chr15:89903011-89903111 ( 6) GGCACCAG 1 chr12:8437124-8437224 ( 37) TGCTCCTG 1 chr5:18478328-18478428 ( 89) TGCTCCTG 1 chr6:43363071-43363171 ( 41) TGCTCCTG 1 chr11:81040107-81040207 ( 72) GGCAGGAG 1 chr3:34521520-34521620 ( 56) TGCTCCTG 1 chr9:101518061-101518161 ( 71) GGCAGGAG 1 chr1:51628149-51628249 ( 76) TGCTCCTG 1 chr4:106838820-106838920 ( 12) TGCAGGAG 1 chr12:5443250-5443350 ( 77) TGCACCAG 1 chr3:82636620-82636720 ( 71) TGCAGGAG 1 chr2:19785892-19785992 ( 36) TGCAGGAG 1 chr17:32091308-32091408 ( 3) GGCTGCCG 1 chr11:33740084-33740184 ( 48) GGCAGGTG 1 chr2:61533178-61533278 ( 36) GGCTCGAG 1 chr10:87665950-87666050 ( 60) TGCTGCCG 1 chr10:98147216-98147316 ( 73) TGCTGCCG 1 chr9:94582308-94582408 ( 40) GGCTCGTG 1 chr15:103183765-10318386 ( 36) GGCAGCCG 1 chr17:7286301-7286401 ( 69) TGCAGCCG 1 chr2:68281188-68281288 ( 86) TGCACGAG 1 chr4:13844366-13844466 ( 25) GGCTCCCG 1 chr4:149979915-149980015 ( 10) GGCACGTG 1 chr18:25542328-25542428 ( 26) TGCTCCCG 1 chr2:75481699-75481799 ( 85) TGCTCCCG 1 chr3:57919322-57919422 ( 60) TGCACGTG 1 chr17:49952001-49952101 ( 26) TGCACGTG 1 chr16:94743571-94743671 ( 39) GGCTGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.2245 E= 4.3e-035 -1404 -1404 123 77 -1404 -1404 213 -1404 -1404 213 -1404 -1404 31 -1404 -1404 129 -1404 -3 176 -1404 -1404 175 1 -1404 108 -227 -527 46 -1404 -1404 213 -1404 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 169 E= 4.3e-035 0.000000 0.000000 0.538462 0.461538 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.337278 0.000000 0.000000 0.662722 0.000000 0.224852 0.775148 0.000000 0.000000 0.769231 0.230769 0.000000 0.573964 0.047337 0.005917 0.372781 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWG MEME-2 regular expression -------------------------------------------------------------------------------- [GT]GC[TA][GC][CG][AT]G -------------------------------------------------------------------------------- Time 1001.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CWKTGTKY MEME-3 width = 8 sites = 110 llr = 922 E-value = 4.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWKTGTKY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C a::::::6 probability G ::5:a:4: matrix T :75a:a64 bits 2.1 * * 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 ******** (12.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGTGTTC consensus AT GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWKTGTKY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr6:33274748-33274848 + 29 1.48e-05 CGCATTTTAT CTGTGTTC TTGTATTGAT chr12:8437124-8437224 + 74 1.48e-05 TGCCACTCAG CTGTGTTC TTCAGTAGCA chr9:48736211-48736311 + 79 1.48e-05 ATTCAACAGC CTGTGTTC TGTTCGGAGA chr11:32027620-32027720 + 1 1.48e-05 . CTGTGTTC CATAATTACA chr11:81522819-81522919 + 84 1.48e-05 ttctcacagc ctgtgttc ctgctctct chr19:17240441-17240541 - 50 1.48e-05 ATCACATTTG CTGTGTTC TGTTTGCTAG chr8:117178722-117178822 + 9 1.48e-05 ACCCTCCC CTGTGTTC TGCCTGAGTA chr7:75370883-75370983 - 85 1.48e-05 AGGATGTT CTGTGTTC AGAGCACAGA chr2:127961083-127961183 + 71 1.48e-05 GCCCTGTGAG CTGTGTTC AGGGCAGCAT chr5:77581240-77581340 + 31 1.48e-05 TTCCCCACAG CTGTGTTC CACTGCCAAT chr18:75607580-75607680 - 63 1.48e-05 TTCCCACAGC CTGTGTTC CCATAGAGGG chr10:99599374-99599474 + 33 1.48e-05 cgttgacatc ctgtgttc taagtggtaa chr8:17073721-17073821 - 60 1.48e-05 TAGATGGATG CTGTGTTC TCTGAGGGAG chr15:24566902-24567002 + 50 1.48e-05 GGCACTTAGT CTGTGTTC AGCCTTTGTT chr13:99650220-99650320 - 60 4.49e-05 TCGCTCGGCT CTTTGTTC CTCCTCCCTC chr19:22905059-22905159 + 63 4.49e-05 AACACGGATG CTTTGTTC TGCAGAGAGA chr5:75862511-75862611 - 13 4.49e-05 CCCTTGTCTG CTGTGTGC CTAGTTGATT chr19:37150219-37150319 + 64 4.49e-05 GCAGTGACAG CTGTGTGC TTGGGAATTA chr4:106199851-106199951 - 81 4.49e-05 GGCGGGCGGG CTGTGTGC TGGCTCTGTG chr7:134800003-134800103 - 25 4.49e-05 CCATGCCATG CTTTGTTC TGGAAAATCA chrX:47461763-47461863 + 14 4.49e-05 TCCTTGGGTT CTTTGTTC GGAAACATAT chr3:97100703-97100803 - 16 4.49e-05 GGCAGCCTGG CTTTGTTC TGACCCAATC chr9:71728832-71728932 - 61 4.49e-05 AGAGTTGAGT CTTTGTTC CCACATACAT chr7:49418714-49418814 + 84 4.49e-05 CTCATGTTCT CTGTGTGC TCCGCAAGC chr9:57967417-57967517 - 29 4.49e-05 GGCTATAAGG CTTTGTTC ACTGGGGAAA chr1:25060390-25060490 + 32 4.49e-05 ttctgttagt ctgtgtgc tctcaatggt chr4:82304171-82304271 - 51 4.49e-05 TCAGAGCACT CTTTGTTC GCCTAGGTAG chr11:114192930-11419303 + 70 4.49e-05 TTCACCCTGG CTGTGTGC TAGTTACCCT chr5:38403538-38403638 + 47 4.49e-05 TCTCCAGATG CTTTGTTC TAGGGATGGA chr11:35927252-35927352 - 84 4.49e-05 ATCTGCCAA CTGTGTGC GGGTTTCTTT chr12:117627245-11762734 + 47 4.49e-05 CTGCCAATTC CTTTGTTC TTGGTCCTCT chr13:56336931-56337031 + 58 4.49e-05 CGTTGATAGG CTGTGTGC CTCTGTGTGT chr7:83821811-83821911 - 10 4.49e-05 TCTCTCTTGC CTTTGTTC TATGACAAG chr2:116975541-116975641 - 56 4.49e-05 ATGAATGGGG CTTTGTTC GCTGCCAGCC chr2:131686687-131686787 - 72 4.49e-05 GCTGCCCAGG CTTTGTTC CACTCTCTGA chr1:76148869-76148969 + 68 6.25e-05 gaacaaatca ctgtgttt tatgataaac chr10:87665950-87666050 - 86 6.25e-05 TGCTCTG CTGTGTTT CAGATGAGTA chr5:71119394-71119494 + 72 6.25e-05 TCACACGTCT CTGTGTTT TCACTTCTAA chr1:23956457-23956557 - 47 6.25e-05 AACGCACACT CTGTGTTT TGCTGGGGAT chr3:130385768-130385868 + 36 6.25e-05 GCAGGCAGCT CTGTGTTT TCCTTGGCGT chr14:45455898-45455998 + 61 6.25e-05 GATTCGGAGT CTGTGTTT TCACTCGATT chr2:76087103-76087203 + 81 6.25e-05 GAATTTGAAA CTGTGTTT GCTACTTGCT chr6:73611529-73611629 + 89 6.25e-05 ATAGTCCCTT CTGTGTTT TTCT chr6:129229859-129229959 - 53 6.25e-05 AAGGCCTTGG CTGTGTTT CCTAAACAGT chr14:25633804-25633904 + 36 7.73e-05 GGCATCCATC CTTTGTGC TGGCAGCAAG chr9:75874692-75874792 - 27 7.73e-05 CATGGCTGTC CTTTGTGC TTTCCAGTTT chr16:66867563-66867663 - 5 7.73e-05 GCTTACCCTA CTTTGTGC AAAG chrX:143906596-143906696 + 30 7.73e-05 GCTGAGGGTT CTTTGTGC TGAGAAATTG chr9:48705448-48705548 + 71 7.73e-05 cggagggagg ctttgtgc atgccagaaa chr6:140481680-140481780 + 50 9.21e-05 TGCCCTGATG CAGTGTTC TGAGTGCTGA chr4:85162706-85162806 - 31 9.21e-05 TACTGCCCTC CAGTGTTC ACTGGCGTCC chr5:118666771-118666871 + 59 9.21e-05 AATCGTGTTT CAGTGTTC TGGTGGTCAT chr12:29015456-29015556 + 44 9.21e-05 TGGGAAATGC CAGTGTTC TAATTAACTC chr17:52056409-52056509 - 31 9.21e-05 AGAAGGCTTT CAGTGTTC CCAGTCTCAG chr12:32692215-32692315 - 6 9.21e-05 GAAGAGAAAA CAGTGTTC CTGGG chr10:49509524-49509624 + 77 9.21e-05 ATGACAAGAC CAGTGTTC ATACTGGAAG chr15:64542472-64542572 + 28 9.21e-05 aaattgtacg cagtgttc agtatccatg chr13:105223079-10522317 - 28 9.21e-05 TGCTGATGCT CAGTGTTC TGACCTAGGA chr13:90515742-90515842 - 83 9.21e-05 GGAAGTTGTG CAGTGTTC TGGTGCTGAT chr5:55294721-55294821 - 87 1.28e-04 ATGAAC CTGTGTGT TCAGCTCTAT chr7:111998584-111998684 + 38 1.28e-04 ggcagcctca ctttgttt gatggcagct chr13:8565556-8565656 - 24 1.28e-04 TGCCTTTGTC CTTTGTTT AGGCATGTTG chr5:105792690-105792790 + 66 1.28e-04 TTGGAAGTTA CTGTGTGT AACCACACAG chr1:153062525-153062625 - 85 1.28e-04 TCCCTAAC CTTTGTTT GCTTCACTGA chr9:53890039-53890139 - 33 1.28e-04 GCGCCCTCTG CTGTGTGT ATGTGTGTCT chr15:12245574-12245674 - 86 1.28e-04 AGCCCAG CTGTGTGT GCTGATCTTC chr14:78383102-78383202 - 39 1.28e-04 TCCATCTTCT CTTTGTTT ACACACTGCT chr8:24001635-24001735 + 19 1.28e-04 TGTGTGTGTA CTTTGTTT AATTAGCTGT chr15:65423781-65423881 + 12 1.28e-04 TCCACactct ctgtgtgt ggtgaaacaa chr1:55454019-55454119 + 55 1.28e-04 TCACTCAGGG CTGTGTGT CTCAGTTCCT chr16:40194806-40194906 - 71 1.28e-04 AATACTGCAG CTGTGTGT GGATCTGCAG chr1:25076456-25076556 - 21 1.28e-04 GCACTTAGCG CTGTGTGT GGTGTGTATG chr7:111452654-111452754 + 16 1.28e-04 tgttcatttg ctgtgtgt ttttttctga chr8:11382621-11382721 + 42 1.28e-04 GGGATGGGCT CTTTGTTT GTGGGAGCTT chr10:8038572-8038672 + 55 1.28e-04 TGGTTCACAA CTTTGTTT TTAAATTTCC chr3:57919322-57919422 + 38 1.28e-04 CCCTGGCTCC CTTTGTTT TGTCACAATT chr2:77754620-77754720 + 20 1.28e-04 taacgccctg ctttgttt tccttttctc chr17:49952001-49952101 + 17 1.28e-04 ACCCGGGGCT CTGTGTGT GTGCACGTGC chr13:97986690-97986790 + 5 1.58e-04 TAAC CATTGTTC ATGACAACGG chr13:59145620-59145720 + 88 1.58e-04 TGCCCAGCAC CAGTGTGC GTAGA chr15:93673735-93673835 - 33 1.58e-04 CTAATTGCCT CATTGTTC TGAAACACTG chr8:8613759-8613859 - 51 1.58e-04 ATATACTAGG CAGTGTGC AAAATATTGG chr1:96685566-96685666 + 52 1.58e-04 atcttgtttc cattgttc atggattctt chr17:73649338-73649438 + 50 1.58e-04 AGCAATTTAT CAGTGTGC TGGGGAAGAG chr13:110062969-11006306 + 57 1.58e-04 GTTATCATTC CATTGTTC GCATTCCCAT chr19:35495122-35495222 - 75 1.58e-04 CAGGCATAGC CATTGTTC TTGGGTCAAT chr12:72285305-72285405 + 32 1.58e-04 TCGGCCCCAT CAGTGTGC GAGGCTTGGG chr18:55816344-55816444 - 61 1.58e-04 ATGTGCAGCT CATTGTTC TATGGGAACC chr17:56896476-56896576 - 27 1.75e-04 TAATTGAGGG CTTTGTGT CCCTCTGTTG chr19:31188794-31188894 + 10 1.75e-04 CTTTCTGTG CTTTGTGT CTGGTGACAC chr3:146267956-146268056 + 73 1.75e-04 AGCCACTCCC CTTTGTGT GCGCTCAATC chr15:96818718-96818818 + 53 1.75e-04 ttttgcagtt ctttgtgt agtctagatg chr3:100358919-100359019 - 83 1.75e-04 CTTGCAAGCC CTTTGTGT CCTGAGAGCC chr7:132712112-132712212 - 88 1.93e-04 ATCGT CAGTGTTT GGGGGCACCC chr8:33199129-33199229 - 71 1.93e-04 TGGTGCCTGC CAGTGTTT TGCATGTGCT chr3:34521520-34521620 - 88 1.93e-04 TTGCG CAGTGTTT GTAGCATGAG chr8:115433423-115433523 + 32 1.93e-04 AGGACTGTGC CAGTGTTT CTGCTGCCAC chr15:89903011-89903111 + 26 2.08e-04 TCAGTCTTCT CATTGTGC TATGTGATTG chr1:159135247-159135347 + 88 2.08e-04 CCGATGTCTG CATTGTGC GCTGA chr8:23964071-23964171 - 35 2.08e-04 TTCTCTCTCA CATTGTGC TGGCAAGTTT chr15:80861981-80862081 + 32 2.08e-04 GCAAAAGGAG CATTGTGC AGTGTTGGCA chr10:90531563-90531663 - 42 2.08e-04 CAGTTCAGAG CATTGTGC TACAGGGAAA chr2:159732345-159732445 - 89 2.08e-04 ACTT CATTGTGC AAGTGATTTA chr5:41973545-41973645 + 28 2.08e-04 TACATCTCTG CATTGTGC TTGCCAAAGC chr6:32409714-32409814 + 49 2.43e-04 AAAACTGTCA CATTGTTT GGTCTATTTT chr10:67061269-67061369 + 80 2.43e-04 ataaacaagc cattgttt ggtttcacca chr6:97529248-97529348 + 82 2.43e-04 ATGTGCCTTT CATTGTTT CATTGTGTGG chr17:77486237-77486337 - 78 2.43e-04 TGAAATATGT CATTGTTT GTTCTCTTTG chr3:9974309-9974409 + 20 2.43e-04 GCAGTGGGAA CAGTGTGT CAGGCAGCAG chr3:127293409-127293509 + 3 2.61e-04 GC CATTGTGT TCCCACAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWKTGTKY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:33274748-33274848 1.5e-05 28_[+3]_64 chr12:8437124-8437224 1.5e-05 73_[+3]_19 chr9:48736211-48736311 1.5e-05 78_[+3]_14 chr11:32027620-32027720 1.5e-05 [+3]_92 chr11:81522819-81522919 1.5e-05 83_[+3]_9 chr19:17240441-17240541 1.5e-05 49_[-3]_43 chr8:117178722-117178822 1.5e-05 8_[+3]_84 chr7:75370883-75370983 1.5e-05 84_[-3]_8 chr2:127961083-127961183 1.5e-05 70_[+3]_22 chr5:77581240-77581340 1.5e-05 30_[+3]_62 chr18:75607580-75607680 1.5e-05 62_[-3]_30 chr10:99599374-99599474 1.5e-05 32_[+3]_60 chr8:17073721-17073821 1.5e-05 59_[-3]_33 chr15:24566902-24567002 1.5e-05 49_[+3]_43 chr13:99650220-99650320 4.5e-05 59_[-3]_33 chr19:22905059-22905159 4.5e-05 62_[+3]_30 chr5:75862511-75862611 4.5e-05 12_[-3]_80 chr19:37150219-37150319 4.5e-05 63_[+3]_29 chr4:106199851-106199951 4.5e-05 80_[-3]_12 chr7:134800003-134800103 4.5e-05 24_[-3]_68 chrX:47461763-47461863 4.5e-05 13_[+3]_79 chr3:97100703-97100803 4.5e-05 15_[-3]_77 chr9:71728832-71728932 4.5e-05 60_[-3]_32 chr7:49418714-49418814 4.5e-05 83_[+3]_9 chr9:57967417-57967517 4.5e-05 28_[-3]_64 chr1:25060390-25060490 4.5e-05 31_[+3]_61 chr4:82304171-82304271 4.5e-05 50_[-3]_42 chr11:114192930-11419303 4.5e-05 69_[+3]_23 chr5:38403538-38403638 4.5e-05 46_[+3]_46 chr11:35927252-35927352 4.5e-05 83_[-3]_9 chr12:117627245-11762734 4.5e-05 46_[+3]_46 chr13:56336931-56337031 4.5e-05 57_[+3]_35 chr7:83821811-83821911 4.5e-05 9_[-3]_83 chr2:116975541-116975641 4.5e-05 55_[-3]_37 chr2:131686687-131686787 4.5e-05 71_[-3]_21 chr1:76148869-76148969 6.2e-05 67_[+3]_25 chr10:87665950-87666050 6.2e-05 85_[-3]_7 chr5:71119394-71119494 6.2e-05 71_[+3]_21 chr1:23956457-23956557 6.2e-05 46_[-3]_46 chr3:130385768-130385868 6.2e-05 35_[+3]_57 chr14:45455898-45455998 6.2e-05 60_[+3]_32 chr2:76087103-76087203 6.2e-05 80_[+3]_12 chr6:73611529-73611629 6.2e-05 88_[+3]_4 chr6:129229859-129229959 6.2e-05 52_[-3]_40 chr14:25633804-25633904 7.7e-05 35_[+3]_57 chr9:75874692-75874792 7.7e-05 26_[-3]_66 chr16:66867563-66867663 7.7e-05 4_[-3]_88 chrX:143906596-143906696 7.7e-05 29_[+3]_63 chr9:48705448-48705548 7.7e-05 70_[+3]_22 chr6:140481680-140481780 9.2e-05 49_[+3]_43 chr4:85162706-85162806 9.2e-05 30_[-3]_62 chr5:118666771-118666871 9.2e-05 58_[+3]_34 chr12:29015456-29015556 9.2e-05 43_[+3]_49 chr17:52056409-52056509 9.2e-05 30_[-3]_62 chr12:32692215-32692315 9.2e-05 5_[-3]_87 chr10:49509524-49509624 9.2e-05 76_[+3]_16 chr15:64542472-64542572 9.2e-05 27_[+3]_65 chr13:105223079-10522317 9.2e-05 27_[-3]_65 chr13:90515742-90515842 9.2e-05 82_[-3]_10 chr5:55294721-55294821 0.00013 86_[-3]_6 chr7:111998584-111998684 0.00013 37_[+3]_55 chr13:8565556-8565656 0.00013 23_[-3]_69 chr5:105792690-105792790 0.00013 65_[+3]_27 chr1:153062525-153062625 0.00013 84_[-3]_8 chr9:53890039-53890139 0.00013 32_[-3]_60 chr15:12245574-12245674 0.00013 85_[-3]_7 chr14:78383102-78383202 0.00013 38_[-3]_54 chr8:24001635-24001735 0.00013 18_[+3]_74 chr15:65423781-65423881 0.00013 11_[+3]_81 chr1:55454019-55454119 0.00013 54_[+3]_38 chr16:40194806-40194906 0.00013 70_[-3]_22 chr1:25076456-25076556 0.00013 20_[-3]_72 chr7:111452654-111452754 0.00013 15_[+3]_77 chr8:11382621-11382721 0.00013 41_[+3]_51 chr10:8038572-8038672 0.00013 54_[+3]_38 chr3:57919322-57919422 0.00013 37_[+3]_55 chr2:77754620-77754720 0.00013 19_[+3]_73 chr17:49952001-49952101 0.00013 16_[+3]_76 chr13:97986690-97986790 0.00016 4_[+3]_88 chr13:59145620-59145720 0.00016 87_[+3]_5 chr15:93673735-93673835 0.00016 32_[-3]_60 chr8:8613759-8613859 0.00016 50_[-3]_42 chr1:96685566-96685666 0.00016 51_[+3]_41 chr17:73649338-73649438 0.00016 49_[+3]_43 chr13:110062969-11006306 0.00016 56_[+3]_36 chr19:35495122-35495222 0.00016 74_[-3]_18 chr12:72285305-72285405 0.00016 31_[+3]_61 chr18:55816344-55816444 0.00016 60_[-3]_32 chr17:56896476-56896576 0.00018 26_[-3]_66 chr19:31188794-31188894 0.00018 9_[+3]_83 chr3:146267956-146268056 0.00018 72_[+3]_20 chr15:96818718-96818818 0.00018 52_[+3]_40 chr3:100358919-100359019 0.00018 82_[-3]_10 chr7:132712112-132712212 0.00019 87_[-3]_5 chr8:33199129-33199229 0.00019 70_[-3]_22 chr3:34521520-34521620 0.00019 87_[-3]_5 chr8:115433423-115433523 0.00019 31_[+3]_61 chr15:89903011-89903111 0.00021 25_[+3]_67 chr1:159135247-159135347 0.00021 87_[+3]_5 chr8:23964071-23964171 0.00021 34_[-3]_58 chr15:80861981-80862081 0.00021 31_[+3]_61 chr10:90531563-90531663 0.00021 41_[-3]_51 chr2:159732345-159732445 0.00021 88_[-3]_4 chr5:41973545-41973645 0.00021 27_[+3]_65 chr6:32409714-32409814 0.00024 48_[+3]_44 chr10:67061269-67061369 0.00024 79_[+3]_13 chr6:97529248-97529348 0.00024 81_[+3]_11 chr17:77486237-77486337 0.00024 77_[-3]_15 chr3:9974309-9974409 0.00024 19_[+3]_73 chr3:127293409-127293509 0.00026 2_[+3]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWKTGTKY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWKTGTKY width=8 seqs=110 chr6:33274748-33274848 ( 29) CTGTGTTC 1 chr12:8437124-8437224 ( 74) CTGTGTTC 1 chr9:48736211-48736311 ( 79) CTGTGTTC 1 chr11:32027620-32027720 ( 1) CTGTGTTC 1 chr11:81522819-81522919 ( 84) CTGTGTTC 1 chr19:17240441-17240541 ( 50) CTGTGTTC 1 chr8:117178722-117178822 ( 9) CTGTGTTC 1 chr7:75370883-75370983 ( 85) CTGTGTTC 1 chr2:127961083-127961183 ( 71) CTGTGTTC 1 chr5:77581240-77581340 ( 31) CTGTGTTC 1 chr18:75607580-75607680 ( 63) CTGTGTTC 1 chr10:99599374-99599474 ( 33) CTGTGTTC 1 chr8:17073721-17073821 ( 60) CTGTGTTC 1 chr15:24566902-24567002 ( 50) CTGTGTTC 1 chr13:99650220-99650320 ( 60) CTTTGTTC 1 chr19:22905059-22905159 ( 63) CTTTGTTC 1 chr5:75862511-75862611 ( 13) CTGTGTGC 1 chr19:37150219-37150319 ( 64) CTGTGTGC 1 chr4:106199851-106199951 ( 81) CTGTGTGC 1 chr7:134800003-134800103 ( 25) CTTTGTTC 1 chrX:47461763-47461863 ( 14) CTTTGTTC 1 chr3:97100703-97100803 ( 16) CTTTGTTC 1 chr9:71728832-71728932 ( 61) CTTTGTTC 1 chr7:49418714-49418814 ( 84) CTGTGTGC 1 chr9:57967417-57967517 ( 29) CTTTGTTC 1 chr1:25060390-25060490 ( 32) CTGTGTGC 1 chr4:82304171-82304271 ( 51) CTTTGTTC 1 chr11:114192930-11419303 ( 70) CTGTGTGC 1 chr5:38403538-38403638 ( 47) CTTTGTTC 1 chr11:35927252-35927352 ( 84) CTGTGTGC 1 chr12:117627245-11762734 ( 47) CTTTGTTC 1 chr13:56336931-56337031 ( 58) CTGTGTGC 1 chr7:83821811-83821911 ( 10) CTTTGTTC 1 chr2:116975541-116975641 ( 56) CTTTGTTC 1 chr2:131686687-131686787 ( 72) CTTTGTTC 1 chr1:76148869-76148969 ( 68) CTGTGTTT 1 chr10:87665950-87666050 ( 86) CTGTGTTT 1 chr5:71119394-71119494 ( 72) CTGTGTTT 1 chr1:23956457-23956557 ( 47) CTGTGTTT 1 chr3:130385768-130385868 ( 36) CTGTGTTT 1 chr14:45455898-45455998 ( 61) CTGTGTTT 1 chr2:76087103-76087203 ( 81) CTGTGTTT 1 chr6:73611529-73611629 ( 89) CTGTGTTT 1 chr6:129229859-129229959 ( 53) CTGTGTTT 1 chr14:25633804-25633904 ( 36) CTTTGTGC 1 chr9:75874692-75874792 ( 27) CTTTGTGC 1 chr16:66867563-66867663 ( 5) CTTTGTGC 1 chrX:143906596-143906696 ( 30) CTTTGTGC 1 chr9:48705448-48705548 ( 71) CTTTGTGC 1 chr6:140481680-140481780 ( 50) CAGTGTTC 1 chr4:85162706-85162806 ( 31) CAGTGTTC 1 chr5:118666771-118666871 ( 59) CAGTGTTC 1 chr12:29015456-29015556 ( 44) CAGTGTTC 1 chr17:52056409-52056509 ( 31) CAGTGTTC 1 chr12:32692215-32692315 ( 6) CAGTGTTC 1 chr10:49509524-49509624 ( 77) CAGTGTTC 1 chr15:64542472-64542572 ( 28) CAGTGTTC 1 chr13:105223079-10522317 ( 28) CAGTGTTC 1 chr13:90515742-90515842 ( 83) CAGTGTTC 1 chr5:55294721-55294821 ( 87) CTGTGTGT 1 chr7:111998584-111998684 ( 38) CTTTGTTT 1 chr13:8565556-8565656 ( 24) CTTTGTTT 1 chr5:105792690-105792790 ( 66) CTGTGTGT 1 chr1:153062525-153062625 ( 85) CTTTGTTT 1 chr9:53890039-53890139 ( 33) CTGTGTGT 1 chr15:12245574-12245674 ( 86) CTGTGTGT 1 chr14:78383102-78383202 ( 39) CTTTGTTT 1 chr8:24001635-24001735 ( 19) CTTTGTTT 1 chr15:65423781-65423881 ( 12) CTGTGTGT 1 chr1:55454019-55454119 ( 55) CTGTGTGT 1 chr16:40194806-40194906 ( 71) CTGTGTGT 1 chr1:25076456-25076556 ( 21) CTGTGTGT 1 chr7:111452654-111452754 ( 16) CTGTGTGT 1 chr8:11382621-11382721 ( 42) CTTTGTTT 1 chr10:8038572-8038672 ( 55) CTTTGTTT 1 chr3:57919322-57919422 ( 38) CTTTGTTT 1 chr2:77754620-77754720 ( 20) CTTTGTTT 1 chr17:49952001-49952101 ( 17) CTGTGTGT 1 chr13:97986690-97986790 ( 5) CATTGTTC 1 chr13:59145620-59145720 ( 88) CAGTGTGC 1 chr15:93673735-93673835 ( 33) CATTGTTC 1 chr8:8613759-8613859 ( 51) CAGTGTGC 1 chr1:96685566-96685666 ( 52) CATTGTTC 1 chr17:73649338-73649438 ( 50) CAGTGTGC 1 chr13:110062969-11006306 ( 57) CATTGTTC 1 chr19:35495122-35495222 ( 75) CATTGTTC 1 chr12:72285305-72285405 ( 32) CAGTGTGC 1 chr18:55816344-55816444 ( 61) CATTGTTC 1 chr17:56896476-56896576 ( 27) CTTTGTGT 1 chr19:31188794-31188894 ( 10) CTTTGTGT 1 chr3:146267956-146268056 ( 73) CTTTGTGT 1 chr15:96818718-96818818 ( 53) CTTTGTGT 1 chr3:100358919-100359019 ( 83) CTTTGTGT 1 chr7:132712112-132712212 ( 88) CAGTGTTT 1 chr8:33199129-33199229 ( 71) CAGTGTTT 1 chr3:34521520-34521620 ( 88) CAGTGTTT 1 chr8:115433423-115433523 ( 32) CAGTGTTT 1 chr15:89903011-89903111 ( 26) CATTGTGC 1 chr1:159135247-159135347 ( 88) CATTGTGC 1 chr8:23964071-23964171 ( 35) CATTGTGC 1 chr15:80861981-80862081 ( 32) CATTGTGC 1 chr10:90531563-90531663 ( 42) CATTGTGC 1 chr2:159732345-159732445 ( 89) CATTGTGC 1 chr5:41973545-41973645 ( 28) CATTGTGC 1 chr6:32409714-32409814 ( 49) CATTGTTT 1 chr10:67061269-67061369 ( 80) CATTGTTT 1 chr6:97529248-97529348 ( 82) CATTGTTT 1 chr17:77486237-77486337 ( 78) CATTGTTT 1 chr3:9974309-9974409 ( 20) CAGTGTGT 1 chr3:127293409-127293509 ( 3) CATTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWKTGTKY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.9394 E= 4.2e-006 -1343 213 -1343 -1343 31 -1343 -1343 129 -1343 -1343 125 75 -1343 -1343 -1343 188 -1343 -1343 213 -1343 -1343 -1343 -1343 188 -1343 -1343 70 121 -1343 141 -1343 53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWKTGTKY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 4.2e-006 0.000000 1.000000 0.000000 0.000000 0.336364 0.000000 0.000000 0.663636 0.000000 0.000000 0.545455 0.454545 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.372727 0.627273 0.000000 0.609091 0.000000 0.390909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWKTGTKY MEME-3 regular expression -------------------------------------------------------------------------------- C[TA][GT]TGT[TG][CT] -------------------------------------------------------------------------------- Time 1444.93 secs. ******************************************************************************** ******************************************************************************** MOTIF GCKGTTGCCAKRGC MEME-4 width = 14 sites = 12 llr = 163 E-value = 7.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKGTTGCCAKRGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:1::::::8:31: pos.-specific C 1a2:13:a8:::28 probability G 8:4a::a:1:4782 matrix T ::3:98::226::: bits 2.1 * * ** 1.9 * * ** 1.7 * * ** 1.5 * ** ** * Relative 1.3 ** ** ** * * Entropy 1.1 ** *********** (19.6 bits) 0.9 ** *********** 0.6 ** *********** 0.4 ** *********** 0.2 ************** 0.0 -------------- Multilevel GCGGTTGCCATGGC consensus T C GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGTTGCCAKRGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr2:21918206-21918306 + 87 2.14e-09 TTCTGGGTTG GCGGTTGCCATGGC chr6:31029743-31029843 - 72 2.36e-08 TTCTCAAACT GCTGTTGCCATAGC AACTAATGTC chr11:98294396-98294496 + 27 5.16e-08 TTGCCAAGGC GCGGTTGCCAGGGG CCTGCGCGGA chr11:32027620-32027720 - 31 1.02e-07 GGGCTGTACA GCGGTTGCCATGAC AACTAGTTTT chr18:75607580-75607680 - 24 1.30e-07 ACTGGAGCGA GCCGTTGCCTTGGC AACCCCACTG chr14:64199703-64199803 - 84 2.70e-07 CTT CCCGTTGCCATGGC AGCTGGCGGA chr11:61619735-61619835 - 12 3.02e-07 ATCACAGGGC GCGGTCGCGAGGGC AGTTGGCCAG chr3:40036053-40036153 + 87 4.60e-07 CCCAGAGAAG ACTGTTGCCATAGC chr3:132746966-132747066 + 52 5.12e-07 GTTCTTGCTT GCTGTTGCTAGGGG GCAGCATTTA chr1:169485356-169485456 - 17 5.55e-07 TAAATGCCCC GCTGTCGCCTGAGC ATGGACACAA chr18:5163228-5163328 - 73 1.58e-06 GAGCACAGGG GCAGTCGCCAGACC GCGCCCCAGA chr9:56572926-56573026 - 78 1.73e-06 CCTTAAAAC GCGGCTGCTATGCC AAGAGTCGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGTTGCCAKRGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:21918206-21918306 2.1e-09 86_[+4] chr6:31029743-31029843 2.4e-08 71_[-4]_15 chr11:98294396-98294496 5.2e-08 26_[+4]_60 chr11:32027620-32027720 1e-07 30_[-4]_56 chr18:75607580-75607680 1.3e-07 23_[-4]_63 chr14:64199703-64199803 2.7e-07 83_[-4]_3 chr11:61619735-61619835 3e-07 11_[-4]_75 chr3:40036053-40036153 4.6e-07 86_[+4] chr3:132746966-132747066 5.1e-07 51_[+4]_35 chr1:169485356-169485456 5.6e-07 16_[-4]_70 chr18:5163228-5163328 1.6e-06 72_[-4]_14 chr9:56572926-56573026 1.7e-06 77_[-4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGTTGCCAKRGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKGTTGCCAKRGC width=14 seqs=12 chr2:21918206-21918306 ( 87) GCGGTTGCCATGGC 1 chr6:31029743-31029843 ( 72) GCTGTTGCCATAGC 1 chr11:98294396-98294496 ( 27) GCGGTTGCCAGGGG 1 chr11:32027620-32027720 ( 31) GCGGTTGCCATGAC 1 chr18:75607580-75607680 ( 24) GCCGTTGCCTTGGC 1 chr14:64199703-64199803 ( 84) CCCGTTGCCATGGC 1 chr11:61619735-61619835 ( 12) GCGGTCGCGAGGGC 1 chr3:40036053-40036153 ( 87) ACTGTTGCCATAGC 1 chr3:132746966-132747066 ( 52) GCTGTTGCTAGGGG 1 chr1:169485356-169485456 ( 17) GCTGTCGCCTGAGC 1 chr18:5163228-5163328 ( 73) GCAGTCGCCAGACC 1 chr9:56572926-56573026 ( 78) GCGGCTGCTATGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGTTGCCAKRGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 11.7453 E= 7.3e+005 -170 -146 186 -1023 -1023 213 -1023 -1023 -170 -46 86 30 -1023 -1023 213 -1023 -1023 -146 -1023 176 -1023 13 -1023 147 -1023 -1023 213 -1023 -1023 213 -1023 -1023 -1023 171 -146 -70 162 -1023 -1023 -70 -1023 -1023 86 110 30 -1023 154 -1023 -170 -46 171 -1023 -1023 186 -46 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGTTGCCAKRGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 12 E= 7.3e+005 0.083333 0.083333 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.166667 0.416667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.083333 0.166667 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.416667 0.583333 0.333333 0.000000 0.666667 0.000000 0.083333 0.166667 0.750000 0.000000 0.000000 0.833333 0.166667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGTTGCCAKRGC MEME-4 regular expression -------------------------------------------------------------------------------- GC[GT]GT[TC]GCCA[TG][GA]GC -------------------------------------------------------------------------------- Time 1873.45 secs. ******************************************************************************** ******************************************************************************** MOTIF RGRGWGGCKSTGYTG MEME-5 width = 15 sites = 35 llr = 392 E-value = 6.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGRGWGGCKSTGYTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 424:4:::21:112: pos.-specific C 1::2:::8:62251: probability G 4768:aa133:71:a matrix T 11::6:::5:8137: bits 2.1 ** * 1.9 ** * 1.7 ** * 1.5 * ** * Relative 1.3 * *** * * Entropy 1.1 * *** * * (16.1 bits) 0.9 ****** ** * 0.6 ******* *** ** 0.4 ************ ** 0.2 *************** 0.0 --------------- Multilevel GGGGTGGCTCTGCTG consensus AAACA GG CTA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRGWGGCKSTGYTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr11:81522819-81522919 - 51 2.67e-08 AAAGCACAGA AGGGAGGCTCTGTTG CTGGGAGGTC chr13:105223079-10522317 - 41 6.41e-08 GGCAGAGAGG AGAGAGGCTGTGCTG ATGCTCAGTG chr14:77708245-77708345 - 71 1.95e-07 CCTCCGCCTG GGGGTGGCGCTTCTG TTTACTTCCG chr9:27620655-27620755 - 27 2.63e-07 GTGATATTTC AGAGTGGCACTCCTG AAAAGCAAGG chr5:119916392-119916492 - 11 3.01e-07 GGCCGTGCCA GGGCAGGCTCTGCAG AGGCTGGTGC chr11:108150385-10815048 + 70 3.45e-07 CTGGAGCCCA GGGCTGGCTCTGATG GCTGGAAAGC chr1:154661395-154661495 - 44 4.45e-07 TGGGTGGTTG GGGGAGGCGGTGATG CAGCGTTTGG chr13:45850544-45850644 - 24 6.54e-07 TGAGTTCTGC AGAGTGGCACTGTAG ACTGGGTGTG chr6:118341891-118341991 - 7 8.31e-07 CAGGCTGCAG CAGGTGGCTCTGTTG GAAGGT chr1:88584583-88584683 + 7 1.18e-06 CAATGA GGAGTGGCACCCCTG CAGATGGTGT chr11:61619735-61619835 + 41 1.46e-06 GTGATGCTGG GGGGTGGGGGCGCTG AGATGGGGGA chr3:85049701-85049801 + 57 1.64e-06 ATGTCCACTC AGGGTGGGGGTGGTG CTGCTGGAGA chr18:43619312-43619412 + 34 1.64e-06 TTCAAGAGCT GAAGAGGCTCTGTAG AAAAAAATGA chr11:88564780-88564880 - 15 1.82e-06 CTCAGTATCC CGGGAGGCTGTGATG AACTGAGGAC chr16:72028733-72028833 + 83 1.82e-06 TGCGGGTTGC GGGCAGGCTCTCGTG AAC chr15:60633070-60633170 + 5 2.02e-06 ATTT GGACAGGCTCTGCCG AGTGAAGTAC chr9:108234698-108234798 + 32 2.02e-06 CTTCTTCCAA AGACTGGCTCTTCTG CACTCAACAG chr1:127105862-127105962 - 27 2.73e-06 GGCGTTGGCT GGGCTGGCTATGGTG TCTGAAGCGG chr6:43363071-43363171 - 54 2.73e-06 TACAGGCAGG GTGCAGGCTGTGCTG GGTCCCAGGA chr12:110376500-11037660 - 45 2.73e-06 AGGGGGACTG AAGGTGGCGCTCATG GTACTGCAGG chr15:32778413-32778513 + 10 3.00e-06 GACAGCCAC AGAGTGGAGCTGCTG GCTCCCACTG chr12:52360134-52360234 + 69 3.31e-06 GCTCCCAGGG TGTGTGGCTCTGCTG AGAGGAAATG chr2:136111580-136111680 - 2 4.38e-06 GAGGAGCAGG GAAGTGGCTGTACTG T chr16:52191317-52191417 - 42 4.78e-06 TCTCTGCAGA AAGGCGGCTCTGCAG TCTGAAAGCT chr1:138010885-138010985 - 75 5.23e-06 TCTGTTAGAC AGGGAGGCACCACTG GGGAGACAGA chr14:45455898-45455998 + 26 5.23e-06 GGCAAAAAGC TGAGAGGCTGTGTAG CTACCAGTAG chr12:117627245-11762734 - 14 5.23e-06 AGGCTATAGA GGAGAGGCTGCCCAG TCAACAGTGT chr10:117435348-11743544 - 27 6.78e-06 GGACTACCAC ACGGTGGCGCTGCCG TCTAATCGTT chr12:107928605-10792870 - 29 7.35e-06 TCTGTCTTCC ATGGTGGCGATGTTG GCCCGCATCC chr6:100645866-100645966 - 85 1.18e-05 G CTGGTGGCTGTGTAG TTGGGCTTTC chr16:34301886-34301986 - 51 1.18e-05 TGTTCATGGG GAGGTGGCACCTTTG AGGCTCCCAT chr16:77644364-77644464 + 42 1.27e-05 GTCTAGCCGA GGGGAGGGGGTGGCG TGTGAGTGCG chr2:41980561-41980661 - 72 1.47e-05 CAGGAAACGC AGAGTGGGAATCCTG TTAAGCCTGC chr19:30843231-30843331 + 73 1.82e-05 ATTTTACCAA TAGGTGGCACCGTAG ACAACAGTAT chr3:105483538-105483638 + 4 1.94e-05 AGG AAAGTGGGACTCGTG AGCTCAGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRGWGGCKSTGYTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:81522819-81522919 2.7e-08 50_[-5]_35 chr13:105223079-10522317 6.4e-08 40_[-5]_45 chr14:77708245-77708345 1.9e-07 70_[-5]_15 chr9:27620655-27620755 2.6e-07 26_[-5]_59 chr5:119916392-119916492 3e-07 10_[-5]_75 chr11:108150385-10815048 3.4e-07 69_[+5]_16 chr1:154661395-154661495 4.4e-07 43_[-5]_42 chr13:45850544-45850644 6.5e-07 23_[-5]_62 chr6:118341891-118341991 8.3e-07 6_[-5]_79 chr1:88584583-88584683 1.2e-06 6_[+5]_79 chr11:61619735-61619835 1.5e-06 40_[+5]_45 chr3:85049701-85049801 1.6e-06 56_[+5]_29 chr18:43619312-43619412 1.6e-06 33_[+5]_52 chr11:88564780-88564880 1.8e-06 14_[-5]_71 chr16:72028733-72028833 1.8e-06 82_[+5]_3 chr15:60633070-60633170 2e-06 4_[+5]_81 chr9:108234698-108234798 2e-06 31_[+5]_54 chr1:127105862-127105962 2.7e-06 26_[-5]_59 chr6:43363071-43363171 2.7e-06 53_[-5]_32 chr12:110376500-11037660 2.7e-06 44_[-5]_41 chr15:32778413-32778513 3e-06 9_[+5]_76 chr12:52360134-52360234 3.3e-06 68_[+5]_17 chr2:136111580-136111680 4.4e-06 1_[-5]_84 chr16:52191317-52191417 4.8e-06 41_[-5]_44 chr1:138010885-138010985 5.2e-06 74_[-5]_11 chr14:45455898-45455998 5.2e-06 25_[+5]_60 chr12:117627245-11762734 5.2e-06 13_[-5]_72 chr10:117435348-11743544 6.8e-06 26_[-5]_59 chr12:107928605-10792870 7.4e-06 28_[-5]_57 chr6:100645866-100645966 1.2e-05 84_[-5]_1 chr16:34301886-34301986 1.2e-05 50_[-5]_35 chr16:77644364-77644464 1.3e-05 41_[+5]_44 chr2:41980561-41980661 1.5e-05 71_[-5]_14 chr19:30843231-30843331 1.8e-05 72_[+5]_13 chr3:105483538-105483638 1.9e-05 3_[+5]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRGWGGCKSTGYTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGRGWGGCKSTGYTG width=15 seqs=35 chr11:81522819-81522919 ( 51) AGGGAGGCTCTGTTG 1 chr13:105223079-10522317 ( 41) AGAGAGGCTGTGCTG 1 chr14:77708245-77708345 ( 71) GGGGTGGCGCTTCTG 1 chr9:27620655-27620755 ( 27) AGAGTGGCACTCCTG 1 chr5:119916392-119916492 ( 11) GGGCAGGCTCTGCAG 1 chr11:108150385-10815048 ( 70) GGGCTGGCTCTGATG 1 chr1:154661395-154661495 ( 44) GGGGAGGCGGTGATG 1 chr13:45850544-45850644 ( 24) AGAGTGGCACTGTAG 1 chr6:118341891-118341991 ( 7) CAGGTGGCTCTGTTG 1 chr1:88584583-88584683 ( 7) GGAGTGGCACCCCTG 1 chr11:61619735-61619835 ( 41) GGGGTGGGGGCGCTG 1 chr3:85049701-85049801 ( 57) AGGGTGGGGGTGGTG 1 chr18:43619312-43619412 ( 34) GAAGAGGCTCTGTAG 1 chr11:88564780-88564880 ( 15) CGGGAGGCTGTGATG 1 chr16:72028733-72028833 ( 83) GGGCAGGCTCTCGTG 1 chr15:60633070-60633170 ( 5) GGACAGGCTCTGCCG 1 chr9:108234698-108234798 ( 32) AGACTGGCTCTTCTG 1 chr1:127105862-127105962 ( 27) GGGCTGGCTATGGTG 1 chr6:43363071-43363171 ( 54) GTGCAGGCTGTGCTG 1 chr12:110376500-11037660 ( 45) AAGGTGGCGCTCATG 1 chr15:32778413-32778513 ( 10) AGAGTGGAGCTGCTG 1 chr12:52360134-52360234 ( 69) TGTGTGGCTCTGCTG 1 chr2:136111580-136111680 ( 2) GAAGTGGCTGTACTG 1 chr16:52191317-52191417 ( 42) AAGGCGGCTCTGCAG 1 chr1:138010885-138010985 ( 75) AGGGAGGCACCACTG 1 chr14:45455898-45455998 ( 26) TGAGAGGCTGTGTAG 1 chr12:117627245-11762734 ( 14) GGAGAGGCTGCCCAG 1 chr10:117435348-11743544 ( 27) ACGGTGGCGCTGCCG 1 chr12:107928605-10792870 ( 29) ATGGTGGCGATGTTG 1 chr6:100645866-100645966 ( 85) CTGGTGGCTGTGTAG 1 chr16:34301886-34301986 ( 51) GAGGTGGCACCTTTG 1 chr16:77644364-77644464 ( 42) GGGGAGGGGGTGGCG 1 chr2:41980561-41980661 ( 72) AGAGTGGGAATCCTG 1 chr19:30843231-30843331 ( 73) TAGGTGGCACCGTAG 1 chr3:105483538-105483638 ( 4) AAAGTGGGACTCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRGWGGCKSTGYTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.3471 E= 6.6e-001 56 -142 91 -166 -25 -300 152 -166 45 -1177 139 -324 -1177 -19 181 -1177 45 -300 -1177 115 -1177 -1177 213 -1177 -1177 -1177 213 -1177 -324 186 -68 -1177 -25 -1177 17 92 -166 139 46 -1177 -1177 -42 -1177 161 -225 -19 152 -166 -125 109 -68 -8 -25 -142 -1177 134 -1177 -1177 213 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRGWGGCKSTGYTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 35 E= 6.6e-001 0.400000 0.085714 0.428571 0.085714 0.228571 0.028571 0.657143 0.085714 0.371429 0.000000 0.600000 0.028571 0.000000 0.200000 0.800000 0.000000 0.371429 0.028571 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.028571 0.828571 0.142857 0.000000 0.228571 0.000000 0.257143 0.514286 0.085714 0.600000 0.314286 0.000000 0.000000 0.171429 0.000000 0.828571 0.057143 0.200000 0.657143 0.085714 0.114286 0.485714 0.142857 0.257143 0.228571 0.085714 0.000000 0.685714 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRGWGGCKSTGYTG MEME-5 regular expression -------------------------------------------------------------------------------- [GA][GA][GA][GC][TA]GGC[TGA][CG]T[GC][CT][TA]G -------------------------------------------------------------------------------- Time 2299.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CCATCACCATGGSAAC MEME-6 width = 16 sites = 7 llr = 116 E-value = 7.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCATCACCATGGSAAC MEME-6 Description -------------------------------------------------------------------------------- Simplified A 3:7::7::93:::aa: pos.-specific C 77::a:9a::::6::9 probability G :13:::1:::a93::1 matrix T :1:a:3::17:11::: bits 2.1 * * * 1.9 ** * * ** 1.7 ** * * ** 1.5 ** ** ** *** Relative 1.3 * ** *** ** *** Entropy 1.1 * ********** *** (23.9 bits) 0.9 ************ *** 0.6 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CCATCACCATGGCAAC consensus A G T A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCACCATGGSAAC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr18:56287870-56287970 - 22 1.50e-09 ACATTGAGCC CCATCACCATGGTAAC CAGCAGACAG chr1:154661395-154661495 + 69 3.15e-09 CAACCACCCA CTATCACCATGGCAAC CATCAGGGCT chr3:146267956-146268056 + 13 6.46e-09 TCATTAGAAA CCGTCTCCATGGGAAC TCTATGCCAA chr8:120292236-120292336 - 75 1.05e-08 ACATTCTCAA AGATCACCATGGCAAC AACACAGCAG chr10:69594405-69594505 - 24 2.82e-08 AGTTTGCCAG CCATCTCCTAGGCAAC GGGCAGGGAG chr12:6254932-6255032 + 75 2.82e-08 TCTGCCCCTT CCATCAGCATGTCAAC CTCCTCCCCT chr4:14968402-14968502 + 13 9.68e-08 ggctcataca acgtcaccaagggaag tggtcctctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCACCATGGSAAC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:56287870-56287970 1.5e-09 21_[-6]_63 chr1:154661395-154661495 3.1e-09 68_[+6]_16 chr3:146267956-146268056 6.5e-09 12_[+6]_72 chr8:120292236-120292336 1e-08 74_[-6]_10 chr10:69594405-69594505 2.8e-08 23_[-6]_61 chr12:6254932-6255032 2.8e-08 74_[+6]_10 chr4:14968402-14968502 9.7e-08 12_[+6]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCACCATGGSAAC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCATCACCATGGSAAC width=16 seqs=7 chr18:56287870-56287970 ( 22) CCATCACCATGGTAAC 1 chr1:154661395-154661495 ( 69) CTATCACCATGGCAAC 1 chr3:146267956-146268056 ( 13) CCGTCTCCATGGGAAC 1 chr8:120292236-120292336 ( 75) AGATCACCATGGCAAC 1 chr10:69594405-69594505 ( 24) CCATCTCCTAGGCAAC 1 chr12:6254932-6255032 ( 75) CCATCAGCATGTCAAC 1 chr4:14968402-14968502 ( 13) ACGTCACCAAGGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCACCATGGSAAC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 13.4364 E= 7.1e+005 8 164 -945 -945 -945 164 -68 -92 140 -945 32 -945 -945 -945 -945 188 -945 213 -945 -945 140 -945 -945 8 -945 190 -68 -945 -945 213 -945 -945 166 -945 -945 -92 8 -945 -945 140 -945 -945 213 -945 -945 -945 190 -92 -945 132 32 -92 188 -945 -945 -945 188 -945 -945 -945 -945 190 -68 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCACCATGGSAAC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 7 E= 7.1e+005 0.285714 0.714286 0.000000 0.000000 0.000000 0.714286 0.142857 0.142857 0.714286 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.000000 0.285714 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.571429 0.285714 0.142857 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCACCATGGSAAC MEME-6 regular expression -------------------------------------------------------------------------------- [CA]C[AG]TC[AT]CCA[TA]GG[CG]AAC -------------------------------------------------------------------------------- Time 2716.04 secs. ******************************************************************************** ******************************************************************************** MOTIF CTWGMYAATWATBACACAWW MEME-7 width = 20 sites = 9 llr = 157 E-value = 8.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTWGMYAATWATBACACAWW MEME-7 Description -------------------------------------------------------------------------------- Simplified A 2:6:3:9a17a::9:9:874 pos.-specific C 7::274::::::21a:82:: probability G :2:8::1:1:::4:::2::: matrix T 184::6::83:a3::1::36 bits 2.1 * 1.9 * ** * 1.7 * ** * 1.5 ** ** ** Relative 1.3 * * ** ** ***** Entropy 1.1 * ***** *** ****** (25.1 bits) 0.9 ************ ******* 0.6 ************ ******* 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel CTAGCTAATAATGACACAAT consensus AGTCAC T T GCTA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGMYAATWATBACACAWW MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr11:13088211-13088311 - 25 1.12e-11 GATGATGCTG CTAGCTAATAATTACACAAT GGTAGATGTG chr16:66867563-66867663 + 22 5.80e-11 GTAGGGTAAG CTTGCCAATAATTACACAAA TCCAATAATT chr16:72217961-72218061 + 76 5.80e-11 CTGAGTCTAG CTAGCCAATAATCACACAAA CCACA chr2:107853452-107853552 + 8 2.46e-09 tatctgc ctagctaattatgccacatt gggttgcatc chr9:25200031-25200131 - 35 1.50e-08 CATCTCAAAC CGTGATGATAATGACACATA TATTCTCAAG chr1:168908699-168908799 - 54 1.50e-08 ATGATGCTAA AGAGCCAATAATGACAGCAA TTCAAAGCAA chr14:87327936-87328036 + 45 2.88e-08 TAACCTTTGA CTTGATAAATATGACTCAAT TGAGTCACAC chr8:30408330-30408430 - 58 3.43e-08 GAATTGAATT TTTCCCAAGAATCACACAAT CTCAGAATTG chr10:117905028-11790512 - 58 7.50e-08 TCAGATATTT ATACATAATTATTACAGCTT CCCTTAGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGMYAATWATBACACAWW MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:13088211-13088311 1.1e-11 24_[-7]_56 chr16:66867563-66867663 5.8e-11 21_[+7]_59 chr16:72217961-72218061 5.8e-11 75_[+7]_5 chr2:107853452-107853552 2.5e-09 7_[+7]_73 chr9:25200031-25200131 1.5e-08 34_[-7]_46 chr1:168908699-168908799 1.5e-08 53_[-7]_27 chr14:87327936-87328036 2.9e-08 44_[+7]_36 chr8:30408330-30408430 3.4e-08 57_[-7]_23 chr10:117905028-11790512 7.5e-08 57_[-7]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGMYAATWATBACACAWW MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTWGMYAATWATBACACAWW width=20 seqs=9 chr11:13088211-13088311 ( 25) CTAGCTAATAATTACACAAT 1 chr16:66867563-66867663 ( 22) CTTGCCAATAATTACACAAA 1 chr16:72217961-72218061 ( 76) CTAGCCAATAATCACACAAA 1 chr2:107853452-107853552 ( 8) CTAGCTAATTATGCCACATT 1 chr9:25200031-25200131 ( 35) CGTGATGATAATGACACATA 1 chr1:168908699-168908799 ( 54) AGAGCCAATAATGACAGCAA 1 chr14:87327936-87328036 ( 45) CTTGATAAATATGACTCAAT 1 chr8:30408330-30408430 ( 58) TTTCCCAAGAATCACACAAT 1 chr10:117905028-11790512 ( 58) ATACATAATTATTACAGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGMYAATWATBACACAWW MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 13.2466 E= 8.4e+004 -29 154 -982 -129 -982 -982 -4 152 103 -982 -982 71 -982 -4 176 -982 30 154 -982 -982 -982 96 -982 103 171 -982 -104 -982 188 -982 -982 -982 -129 -982 -104 152 130 -982 -982 30 188 -982 -982 -982 -982 -982 -982 188 -982 -4 96 30 171 -104 -982 -982 -982 213 -982 -982 171 -982 -982 -129 -982 176 -4 -982 152 -4 -982 -982 130 -982 -982 30 71 -982 -982 103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGMYAATWATBACACAWW MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 9 E= 8.4e+004 0.222222 0.666667 0.000000 0.111111 0.000000 0.000000 0.222222 0.777778 0.555556 0.000000 0.000000 0.444444 0.000000 0.222222 0.777778 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.444444 0.000000 0.555556 0.888889 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.111111 0.777778 0.666667 0.000000 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.444444 0.333333 0.888889 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 0.777778 0.222222 0.000000 0.777778 0.222222 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.444444 0.000000 0.000000 0.555556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTWGMYAATWATBACACAWW MEME-7 regular expression -------------------------------------------------------------------------------- [CA][TG][AT][GC][CA][TC]AAT[AT]AT[GTC]ACA[CG][AC][AT][TA] -------------------------------------------------------------------------------- Time 3133.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GCASWGAGGCARAGGGMCACAG MEME-8 width = 22 sites = 2 llr = 57 E-value = 1.7e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCASWGAGGCARAGGGMCACAG MEME-8 Description -------------------------------------------------------------------------------- Simplified A ::a:5:a:::a5a:::5:a:a: pos.-specific C :a:5:::::a::::::5a:a:: probability G a::5:a:aa::5:aaa:::::a matrix T ::::5::::::::::::::::: bits 2.1 ** * *** *** * * * 1.9 *** ****** **** ***** 1.7 *** ****** **** ***** 1.5 *** ****** **** ***** Relative 1.3 *** ****** **** ***** Entropy 1.1 **** ***************** (40.9 bits) 0.9 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GCACAGAGGCAAAGGGACACAG consensus GT G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGAGGCARAGGGMCACAG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr3:107831859-107831959 - 68 3.61e-13 GCAGAGGGAG GCAGTGAGGCAGAGGGACACAG CGAGACTGCC chr4:33784636-33784736 - 52 3.61e-13 CTGACACCGA GCACAGAGGCAAAGGGCCACAG ATAATTAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGAGGCARAGGGMCACAG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:107831859-107831959 3.6e-13 67_[-8]_11 chr4:33784636-33784736 3.6e-13 51_[-8]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGAGGCARAGGGMCACAG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCASWGAGGCARAGGGMCACAG width=22 seqs=2 chr3:107831859-107831959 ( 68) GCAGTGAGGCAGAGGGACACAG 1 chr4:33784636-33784736 ( 52) GCACAGAGGCAAAGGGCCACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGAGGCARAGGGMCACAG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 8.84577 E= 1.7e+007 -765 -765 212 -765 -765 212 -765 -765 188 -765 -765 -765 -765 112 112 -765 88 -765 -765 88 -765 -765 212 -765 188 -765 -765 -765 -765 -765 212 -765 -765 -765 212 -765 -765 212 -765 -765 188 -765 -765 -765 88 -765 112 -765 188 -765 -765 -765 -765 -765 212 -765 -765 -765 212 -765 -765 -765 212 -765 88 112 -765 -765 -765 212 -765 -765 188 -765 -765 -765 -765 212 -765 -765 188 -765 -765 -765 -765 -765 212 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGAGGCARAGGGMCACAG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 2 E= 1.7e+007 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCASWGAGGCARAGGGMCACAG MEME-8 regular expression -------------------------------------------------------------------------------- GCA[CG][AT]GAGGCA[AG]AGGG[AC]CACAG -------------------------------------------------------------------------------- Time 3547.21 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCAGKGSTGSCASAKCCTGCAG MEME-9 width = 23 sites = 2 llr = 58 E-value = 1.7e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCAGKGSTGSCASAKCCTGCAG MEME-9 Description -------------------------------------------------------------------------------- Simplified A a::a::::::::a:a::::::a: pos.-specific C ::a::::5::5a:5::aa::a:: probability G :a::a5a5:a5::5:5:::a::a matrix T :::::5::a::::::5::a:::: bits 2.1 ** * * * * ** ** * 1.9 ***** * ** ** * ******* 1.7 ***** * ** ** * ******* 1.5 ***** * ** ** * ******* Relative 1.3 ***** * ** ** * ******* Entropy 1.1 *********************** (42.0 bits) 0.9 *********************** 0.6 *********************** 0.4 *********************** 0.2 *********************** 0.0 ----------------------- Multilevel AGCAGGGCTGCCACAGCCTGCAG consensus T G G G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGKGSTGSCASAKCCTGCAG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------- chr5:18478328-18478428 + 20 1.65e-13 aacaggaatc agcagtggtggcacagcctgcag aaacagtcag chr13:39774002-39774102 + 33 1.65e-13 TCAGTGTAGA AGCAGGGCTGCCAGATCCTGCAG CTAAGCTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGKGSTGSCASAKCCTGCAG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:18478328-18478428 1.7e-13 19_[+9]_58 chr13:39774002-39774102 1.7e-13 32_[+9]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGKGSTGSCASAKCCTGCAG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCAGKGSTGSCASAKCCTGCAG width=23 seqs=2 chr5:18478328-18478428 ( 20) AGCAGTGGTGGCACAGCCTGCAG 1 chr13:39774002-39774102 ( 33) AGCAGGGCTGCCAGATCCTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGKGSTGSCASAKCCTGCAG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 46800 bayes= 10.813 E= 1.7e+007 188 -765 -765 -765 -765 -765 212 -765 -765 212 -765 -765 188 -765 -765 -765 -765 -765 212 -765 -765 -765 112 88 -765 -765 212 -765 -765 112 112 -765 -765 -765 -765 188 -765 -765 212 -765 -765 112 112 -765 -765 212 -765 -765 188 -765 -765 -765 -765 112 112 -765 188 -765 -765 -765 -765 -765 112 88 -765 212 -765 -765 -765 212 -765 -765 -765 -765 -765 188 -765 -765 212 -765 -765 212 -765 -765 188 -765 -765 -765 -765 -765 212 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGKGSTGSCASAKCCTGCAG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 2 E= 1.7e+007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGKGSTGSCASAKCCTGCAG MEME-9 regular expression -------------------------------------------------------------------------------- AGCAG[GT]G[CG]TG[CG]CA[CG]A[GT]CCTGCAG -------------------------------------------------------------------------------- Time 3961.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCYARSCACGGGCSTC MEME-10 width = 17 sites = 2 llr = 43 E-value = 3.3e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCYARSCACGGGCSTC MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::::a5::a:::::::: pos.-specific C :aa5::5a:a:::a5:a probability G a::::55:::aaa:5:: matrix T :::5:::::::::::a: bits 2.1 *** * ***** * 1.9 *** * ******* ** 1.7 *** * ******* ** 1.5 *** * ******* ** Relative 1.3 *** * ******* ** Entropy 1.1 ***************** (31.2 bits) 0.9 ***************** 0.6 ***************** 0.4 ***************** 0.2 ***************** 0.0 ----------------- Multilevel GCCCAACCACGGGCCTC consensus T GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYARSCACGGGCSTC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------- chr10:118781840-11878194 + 4 8.68e-11 TCA GCCCAGCCACGGGCGTC TGTCATCCAC chr5:4961956-4962056 + 3 4.14e-10 CT GCCTAAGCACGGGCCTC AGACAGGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYARSCACGGGCSTC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:118781840-11878194 8.7e-11 3_[+10]_80 chr5:4961956-4962056 4.1e-10 2_[+10]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYARSCACGGGCSTC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCYARSCACGGGCSTC width=17 seqs=2 chr10:118781840-11878194 ( 4) GCCCAGCCACGGGCGTC 1 chr5:4961956-4962056 ( 3) GCCTAAGCACGGGCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYARSCACGGGCSTC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 17 n= 50400 bayes= 9.93036 E= 3.3e+007 -765 -765 212 -765 -765 212 -765 -765 -765 212 -765 -765 -765 112 -765 88 188 -765 -765 -765 88 -765 112 -765 -765 112 112 -765 -765 212 -765 -765 188 -765 -765 -765 -765 212 -765 -765 -765 -765 212 -765 -765 -765 212 -765 -765 -765 212 -765 -765 212 -765 -765 -765 112 112 -765 -765 -765 -765 188 -765 212 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYARSCACGGGCSTC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 17 nsites= 2 E= 3.3e+007 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYARSCACGGGCSTC MEME-10 regular expression -------------------------------------------------------------------------------- GCC[CT]A[AG][CG]CACGGGC[CG]TC -------------------------------------------------------------------------------- Time 4368.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:120748944-120749044 3.89e-03 48_[-4(8.17e-05)]_26_[-2(8.00e-05)]_\ 4 chr17:49952001-49952101 1.34e-02 [+10(1.85e-05)]_83 chr6:129229859-129229959 3.71e-04 25_[-9(5.95e-06)]_4_[-3(6.25e-05)]_\ 40 chr14:101229143-10122924 7.47e-02 100 chr2:61533178-61533278 4.43e-02 100 chr1:13183337-13183437 2.81e-03 36_[-5(1.37e-05)]_49 chr12:11066838-11066938 1.74e-01 100 chrX:11763615-11763715 1.20e-01 40_[+9(2.26e-05)]_37 chr5:39178513-39178613 1.45e-01 100 chr15:55012634-55012734 7.78e-01 100 chr15:24566902-24567002 2.83e-02 49_[+3(1.48e-05)]_43 chr2:77589412-77589512 3.29e-05 77_[+9(4.70e-05)] chr11:13088211-13088311 8.42e-05 24_[-7(1.12e-11)]_56 chr1:177364242-177364342 1.65e-01 100 chr9:29738823-29738923 1.71e-01 100 chr11:57070029-57070129 6.34e-01 100 chr2:103670075-103670175 6.22e-03 100 chr12:71628707-71628807 3.85e-02 100 chr6:51715267-51715367 7.33e-01 100 chr11:33736383-33736483 2.87e-03 5_[-2(1.06e-05)]_87 chr3:10685801-10685901 3.53e-01 100 chr12:53934069-53934169 6.97e-01 76_[-8(5.90e-05)]_2 chr1:32339103-32339203 2.29e-01 100 chr2:77754620-77754720 3.87e-01 100 chr8:114153647-114153747 5.02e-01 100 chr14:112272360-11227246 9.46e-01 100 chr8:17073721-17073821 1.89e-04 33_[-1(1.71e-06)]_5_[-3(1.48e-05)]_\ 14_[-5(8.91e-05)]_4 chr2:131686687-131686787 2.52e-03 71_[-3(4.49e-05)]_21 chr15:95241034-95241134 1.38e-01 100 chr8:45109316-45109416 4.52e-01 100 chr4:31853960-31854060 1.56e-01 100 chr12:99062347-99062447 1.15e-01 50_[+9(3.29e-05)]_27 chr9:48740172-48740272 1.40e-04 11_[+1(7.97e-07)]_40_[+9(3.75e-05)]_\ 5 chr1:51628149-51628249 1.64e-02 10_[-9(8.33e-05)]_67 chr10:99599374-99599474 1.37e-01 32_[+3(1.48e-05)]_60 chr7:143296329-143296429 7.20e-03 100 chr10:110153894-11015399 5.08e-01 100 chr5:41973545-41973645 3.13e-01 100 chr14:19859109-19859209 6.42e-01 100 chr3:60791960-60792060 8.29e-01 100 chr16:72217961-72218061 2.16e-03 75_[+7(5.80e-11)]_5 chr18:55816344-55816444 1.44e-01 100 chr14:64723389-64723489 5.45e-01 27_[-5(6.79e-05)]_58 chr16:90312340-90312440 3.93e-02 100 chr3:100610970-100611070 8.69e-02 20_[-6(9.97e-05)]_64 chr4:48770766-48770866 2.22e-01 63_[-5(6.48e-05)]_22 chr5:125767792-125767892 6.85e-05 1_[-8(5.90e-05)]_1_[-1(1.11e-06)]_3_\ 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chr7:132712112-132712212 6.44e-06 1_[+2(5.68e-05)]_[-2(5.68e-05)]_1_\ [+1(3.79e-06)]_61 chr6:33143017-33143117 9.72e-03 100 chr3:10230628-10230728 4.40e-04 28_[+1(2.39e-09)]_51 chr11:79736633-79736733 1.44e-05 22_[+1(3.94e-07)]_57 chr3:17794465-17794565 8.70e-04 12_[-4(8.72e-05)]_29_[-1(1.92e-05)]_\ 24 chr7:70880456-70880556 5.10e-01 100 chr7:134800003-134800103 3.63e-01 24_[-3(4.49e-05)]_68 chr8:77200456-77200556 6.24e-01 100 chr8:29675850-29675950 7.51e-02 100 chr14:64136305-64136405 4.44e-02 3_[+9(6.02e-05)]_74 chr3:31506210-31506310 1.39e-01 100 chr13:95092074-95092174 3.32e-01 4_[-2(5.68e-05)]_88 chr16:87787006-87787106 6.65e-02 60_[+8(4.51e-05)]_18 chr10:25642079-25642179 5.89e-04 27_[-5(3.04e-05)]_58 chr13:90353910-90354010 8.20e-01 100 chr6:32409714-32409814 1.96e-01 100 chr5:71119394-71119494 5.48e-01 71_[+3(6.25e-05)]_21 chr2:118976195-118976295 9.76e-04 14_[-1(8.92e-07)]_52_[+2(2.31e-05)]_\ 5 chr2:21958309-21958409 4.50e-01 100 chr15:93673735-93673835 4.07e-01 100 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9.06e-01 100 chr16:77644364-77644464 1.58e-04 4_[-1(3.22e-05)]_16_[+5(1.27e-05)]_\ 44 chr1:88474447-88474547 5.42e-02 64_[+2(8.00e-05)]_28 chr1:160534890-160534990 1.94e-03 21_[+4(3.74e-05)]_14_[-2(5.68e-05)]_\ 43 chr19:37150219-37150319 6.81e-03 24_[+7(7.93e-05)]_19_[+3(4.49e-05)]_\ 29 chr12:13100388-13100488 2.51e-01 100 chr4:87624898-87624998 1.52e-01 47_[+9(8.67e-06)]_30 chr17:32091308-32091408 1.92e-04 37_[-1(7.18e-06)]_18_[+8(2.20e-05)]_\ 2 chr7:111998584-111998684 1.96e-04 22_[-4(9.31e-05)]_12_[+2(8.00e-05)]_\ 44 chr5:75862511-75862611 2.25e-03 12_[-3(4.49e-05)]_58_[-7(6.39e-05)]_\ 2 chr18:69152699-69152799 4.28e-05 9_[+10(2.98e-05)]_2_[-1(5.50e-06)]_\ 2_[-2(2.31e-05)]_15_[-1(4.84e-05)]_5 chr13:59145620-59145720 8.02e-08 38_[+1(3.27e-10)]_41 chr5:55294721-55294821 4.20e-01 100 chr18:64588586-64588686 4.44e-03 43_[-1(8.55e-06)]_36 chr19:22905059-22905159 1.70e-01 62_[+3(4.49e-05)]_30 chr5:149997472-149997572 6.47e-02 100 chr4:104650517-104650617 1.12e-02 2_[+2(5.68e-05)]_90 chr12:92152433-92152533 9.74e-01 100 chr10:86100406-86100506 1.85e-01 100 chr18:73963276-73963376 8.34e-04 16_[-9(4.06e-05)]_61 chr16:28630746-28630846 3.00e-03 6_[+1(7.52e-05)]_73 chr4:66482425-66482525 6.03e-01 100 chr7:138493566-138493666 2.43e-03 19_[-1(7.52e-05)]_42_[+2(8.00e-05)]_\ 10 chr5:20363359-20363459 7.19e-01 100 chr9:28354852-28354952 1.77e-02 92_[-2(5.68e-05)] chr12:86823913-86824013 5.48e-05 15_[-1(4.51e-08)]_42_[-1(3.22e-05)]_\ 1 chrX:71106346-71106446 1.08e-02 22_[-9(8.33e-05)]_55 chr12:110092735-11009283 8.16e-03 34_[-9(2.34e-07)]_43 chr2:30667355-30667455 1.13e-02 15_[+1(6.65e-05)]_64 chr1:78838361-78838461 5.51e-01 100 chr5:4961956-4962056 4.09e-08 2_[+10(4.14e-10)]_81 chr1:169485356-169485456 1.15e-03 16_[-4(5.55e-07)]_70 chr17:87139593-87139693 1.84e-01 53_[-6(6.57e-05)]_31 chr9:53158374-53158474 4.56e-01 100 chr13:97986690-97986790 1.73e-01 100 chr13:118040808-11804090 9.95e-01 100 chr19:22248699-22248799 7.14e-02 21_[-2(5.68e-05)]_71 chr18:52366041-52366141 7.59e-01 100 chr4:85162706-85162806 3.60e-01 30_[-3(9.21e-05)]_62 chr16:11689653-11689753 2.15e-01 100 chr10:42204779-42204879 4.35e-02 79_[+1(6.02e-06)] chr2:21280767-21280867 2.90e-04 49_[+2(1.06e-05)]_43 chr1:76148869-76148969 1.50e-01 67_[+3(6.25e-05)]_25 chr13:99650220-99650320 3.39e-04 35_[+1(1.07e-07)]_3_[-3(4.49e-05)]_\ 33 chr14:13892794-13892894 9.38e-01 100 chr11:113990551-11399065 2.26e-02 11_[-6(2.35e-05)]_73 chr15:91281426-91281526 9.12e-02 100 chr10:69594405-69594505 5.72e-05 23_[-6(2.82e-08)]_61 chr14:15413624-15413724 4.45e-01 100 chr6:28588650-28588750 3.77e-01 25_[+2(5.68e-05)]_67 chr2:142561026-142561126 6.69e-03 100 chr13:24551176-24551276 8.56e-02 100 chr6:33274748-33274848 1.44e-01 28_[+3(1.48e-05)]_64 chr12:59815207-59815307 3.19e-01 74_[+5(4.78e-05)]_11 chr5:89702070-89702170 1.04e-01 100 chr5:70990771-70990871 6.57e-01 100 chr19:30843231-30843331 6.32e-01 72_[+5(1.82e-05)]_13 chr18:15023612-15023712 8.71e-02 100 chr1:99912851-99912951 2.41e-01 100 chr16:4379359-4379459 3.62e-01 100 chr6:140481680-140481780 1.06e-03 31_[-2(1.06e-05)]_10_[+3(9.21e-05)]_\ 43 chr16:96533659-96533759 1.38e-04 61_[-5(1.09e-05)]_24 chr12:86824786-86824886 2.97e-02 100 chr12:29049002-29049102 9.40e-02 100 chr12:62721096-62721196 2.26e-01 100 chr3:84061902-84062002 2.00e-02 52_[+2(5.68e-05)]_40 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-39.local ********************************************************************************