******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:107879603-107879703 1.0000 100 chr17:51204541-51204641 1.0000 100 chr6:117574123-117574223 1.0000 100 chr14:99894023-99894123 1.0000 100 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chr6:94224978-94225078 1.0000 100 chr13:5287527-5287627 1.0000 100 chr5:66876825-66876925 1.0000 100 chr5:72041325-72041425 1.0000 100 chr13:110151730-11015183 1.0000 100 chr9:29358491-29358591 1.0000 100 chr10:41830833-41830933 1.0000 100 chr5:6786926-6787026 1.0000 100 chr17:73263006-73263106 1.0000 100 chr4:104686327-104686427 1.0000 100 chr17:69201082-69201182 1.0000 100 chr12:54489604-54489704 1.0000 100 chr4:108914335-108914435 1.0000 100 chr1:169459285-169459385 1.0000 100 chr17:75087276-75087376 1.0000 100 chr5:91843789-91843889 1.0000 100 chr1:143903880-143903980 1.0000 100 chr1:168188247-168188347 1.0000 100 chr13:57347725-57347825 1.0000 100 chr16:14056611-14056711 1.0000 100 chr15:81128088-81128188 1.0000 100 chr1:142891796-142891896 1.0000 100 chr18:75194721-75194821 1.0000 100 chr11:35451529-35451629 1.0000 100 chr4:85228480-85228580 1.0000 100 chr16:52392962-52393062 1.0000 100 chr7:75008447-75008547 1.0000 100 chr5:57785308-57785408 1.0000 100 chr18:34169135-34169235 1.0000 100 chr12:102064880-10206498 1.0000 100 chr5:47014289-47014389 1.0000 100 chr18:29993731-29993831 1.0000 100 chr18:63769241-63769341 1.0000 100 chr5:128482979-128483079 1.0000 100 chr4:104455404-104455504 1.0000 100 chr12:11757012-11757112 1.0000 100 chr1:164218566-164218666 1.0000 100 chr18:38087186-38087286 1.0000 100 chr15:68810392-68810492 1.0000 100 chr4:57489111-57489211 1.0000 100 chr7:115473819-115473919 1.0000 100 chr4:153874121-153874221 1.0000 100 chr9:32033783-32033883 1.0000 100 chr11:119774811-11977491 1.0000 100 chrX:99216454-99216554 1.0000 100 chr12:29083814-29083914 1.0000 100 chr19:36677475-36677575 1.0000 100 chr8:84456815-84456915 1.0000 100 chr4:149798019-149798119 1.0000 100 chr1:35495891-35495991 1.0000 100 chr17:5285888-5285988 1.0000 100 chr9:70622755-70622855 1.0000 100 chr13:25982146-25982246 1.0000 100 chr13:47319552-47319652 1.0000 100 chr18:60891140-60891240 1.0000 100 chr17:86582274-86582374 1.0000 100 chr4:77558781-77558881 1.0000 100 chr15:58588993-58589093 1.0000 100 chr1:116147779-116147879 1.0000 100 chr19:24054787-24054887 1.0000 100 chr15:30506453-30506553 1.0000 100 chr13:29014500-29014600 1.0000 100 chr13:52875577-52875677 1.0000 100 chr10:117094808-11709490 1.0000 100 chr15:31175843-31175943 1.0000 100 chr1:143918893-143918993 1.0000 100 chr13:53777976-53778076 1.0000 100 chr6:8627315-8627415 1.0000 100 chr2:92278599-92278699 1.0000 100 chr12:44857989-44858089 1.0000 100 chr6:18594576-18594676 1.0000 100 chr11:86920337-86920437 1.0000 100 chr5:64389237-64389337 1.0000 100 chr5:51477070-51477170 1.0000 100 chr18:68493806-68493906 1.0000 100 chr17:12187694-12187794 1.0000 100 chr6:103613113-103613213 1.0000 100 chr15:41193181-41193281 1.0000 100 chr6:108324937-108325037 1.0000 100 chr16:29262917-29263017 1.0000 100 chr11:113167469-11316756 1.0000 100 chr11:36381589-36381689 1.0000 100 chr11:84642119-84642219 1.0000 100 chr3:55280946-55281046 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.258 C 0.242 G 0.242 T 0.258 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Pv_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.273 C 0.227 G 0.227 T 0.273 ******************************************************************************** ******************************************************************************** MOTIF SYGCCCTCTRSTGG MEME-1 width = 14 sites = 47 llr = 548 E-value = 2.0e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYGCCCTCTRSTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::3:::3:::: pos.-specific C 45:a9729114:11 probability G 5:a:1:11146:98 matrix T :5::::6:82:9:1 bits 2.1 1.9 ** 1.7 ** * 1.5 *** * ** Relative 1.3 *** * ** Entropy 1.1 ***** * **** (16.8 bits) 0.9 ****** ** **** 0.6 ********* **** 0.4 ********* **** 0.2 ************** 0.0 -------------- Multilevel GCGCCCTCTGGTGG consensus CT AC AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCCTCTRSTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr17:8468671-8468771 - 19 1.68e-09 GCATCCTGAG GCGCCCTCTGGTGG CTTCTTCCGA chr4:125962674-125962774 + 62 1.68e-09 TGGGCATCGG GCGCCCTCTGGTGG TGACAGTGCC chr2:133020359-133020459 - 69 7.05e-09 CTGAGTAAGG GCGCCCTCTGCTGG AAGCAGTCAT chr15:89623502-89623602 - 62 1.07e-08 TGGGTCTCCT CTGCCCTCTGGTGG CAGAAATCTG chr5:47014289-47014389 - 51 1.88e-08 TCACAGTGTG CTGCCCTCTGCTGG ATGCTAGTCT chr3:107357125-107357225 - 5 1.88e-08 CGGGTCTTTT CTGCCCTCTGCTGG TCGC chr12:56404801-56404901 + 51 1.88e-08 CAGATGTGTG CTGCCCTCTGCTGG CAAGCAGTTT chr14:106439254-10643935 - 40 3.05e-08 CGTGCTTGGA CTGCCCTCTAGTGG TCTCTTAGTC chr11:56131189-56131289 - 36 4.51e-08 CTAGTCTAGA GCGCCATCTGGTGG TTATTCCTTA chr6:92787211-92787311 - 74 6.04e-08 CAGGCGATGC GCGCCCTCTTCTGG CTGCTTTTGG chr2:43902532-43902632 + 38 8.16e-08 AAAAGCGTTG CTGCCATCTGGTGG CCGTTTGGCA chr5:149335779-149335879 + 79 1.14e-07 CAGGGCGGAT GCGCCATCTAGTGG CCACTCCC chr9:77596244-77596344 - 84 1.14e-07 GCC CTGCCCCCTAGTGG CGATAGCCTA chr2:117180438-117180538 + 63 2.98e-07 CGGAGCTGCA GTGCCACCTGCTGG ATGGCTTTAG chr11:35451529-35451629 + 50 3.28e-07 CATCTCCAGG CTGCCACCTGCTGG CCAAAGAGAG chr7:51270505-51270605 + 18 3.65e-07 GCATCACATA GCGCCCTCTAGTGT TGCAGTTCTC chr2:126362956-126363056 + 42 4.14e-07 TGGCTCAACA CTGCCCTCTGCTGT CCGGGACCAA chr1:162359171-162359271 - 62 4.60e-07 AAGCTCTTGG CTGCCATCTTCTGG GGGAGTCTGC chr1:123974600-123974700 - 17 7.96e-07 GTTGTAGCTG GCGCCCCCCTGTGG CCACCAGGGT chr2:169849035-169849135 + 53 8.80e-07 TTTCGCGTGA GCACCCTCTGCTGG CTGGATGCAC chr4:32027079-32027179 - 3 8.80e-07 CAGTCCTACC ATGCCCTCTTGTGG TC chr15:24596185-24596285 - 66 9.97e-07 CAGAGCATGT CTGCCCCCTGCTGT GCGCACAGAC chr15:77257312-77257412 - 55 1.22e-06 CCCAGCAGAC GCGCCCCCTACTGT TCACCCTCCC chr12:29187550-29187650 - 17 1.36e-06 GTTTGCATGA ATGCCATCTGCTGG GAGCTCACAG chr4:81564302-81564402 - 25 1.36e-06 AATGCCAACA GCGCCCTCTACTGA CTTCTAAAAG chr4:77558781-77558881 + 33 1.65e-06 AGGTCCCACA GTACCCTCTAGTGG TCACACGTTC chr6:29649755-29649855 + 35 1.82e-06 AAGAGCCATA CCGCCCTCTTGTGA CTGCGAGAGG chr18:73932862-73932962 - 40 1.82e-06 CTCTGGAGCA CCGCCATCTGCTCG AGTCTGCAAG chr9:23249972-23250072 + 55 2.20e-06 GAGCTCCGTG CTGCCATCTGGCGG CAAGTGTCAG chr1:44741197-44741297 + 59 2.41e-06 ATGTGCAAGA CTGCTCTCTGCTGG CAAAGAGGCA chr1:169459285-169459385 + 82 2.62e-06 AAAGTAAACA GTGCCCTCTAGAGG CACGA chr19:33226935-33227035 + 50 2.62e-06 AAGAGTAGTA CTGCCCCCTAGCGG GAGTTTGGAA chr2:106355821-106355921 - 31 2.89e-06 AAATACACCA GTGCCATCTTGTGT TGGAAATAGA chr15:67513696-67513796 + 67 4.46e-06 tccccaaata gtgccaccctctgg agtccaagca chr6:67158707-67158807 + 51 5.23e-06 ATGGTATCAA GCGCCCCCATGTGG CAAATGTCTA chr18:52935095-52935195 + 62 8.45e-06 CTGAAGCTCA ACGCCCCCTAGTGC CTGAGGCTGC chr18:25658881-25658981 - 33 8.45e-06 GCCAGCCTGT GCGCCCGCCAGTGC TTTCCAGAGG chr16:15084716-15084816 + 73 9.13e-06 GCGCTCGCCG CCGCGCTGCGCTGG CCCCTGGCGC chr4:136755382-136755482 + 48 1.15e-05 CAGGCCCCAG CCGCCCGCGGCTCG GCCGAGCGTG chr4:55651060-55651160 - 29 1.15e-05 GCAGCCTGCC GCGGCCACTGGTGG GATGGCCTTC chr3:18625440-18625540 - 32 1.33e-05 AACTGCGACA GCGCGCTGCACTGG GGAACCACAG chr11:84642119-84642219 - 40 1.65e-05 GCGCGCGCAC GCGCGCGGTCGTGG GGAGAGGATG chr2:10831241-10831341 - 42 2.17e-05 TGGCTCATAA CCGGCATCCCGTGG AGATTTGCTG chr10:40751071-40751171 - 22 4.42e-05 GCCTGCGTGC GTGCGCGGGAGTGG CAGAGCTAAA chr16:21333128-21333228 - 6 5.94e-05 CAGACTGCGG CTGCGCGATCGTGG GCGGG chr16:77644291-77644391 + 75 6.66e-05 GTGTGCCTGT GCGCGCGCGCGTGC TCGCTCGGGC chr1:161170618-161170718 - 29 1.33e-04 TATGCGGTCC CCGCCGCCGCGTCG CTTGTGGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCCTCTRSTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:8468671-8468771 1.7e-09 18_[-1]_68 chr4:125962674-125962774 1.7e-09 61_[+1]_25 chr2:133020359-133020459 7.1e-09 68_[-1]_18 chr15:89623502-89623602 1.1e-08 61_[-1]_25 chr5:47014289-47014389 1.9e-08 50_[-1]_36 chr3:107357125-107357225 1.9e-08 4_[-1]_82 chr12:56404801-56404901 1.9e-08 50_[+1]_36 chr14:106439254-10643935 3e-08 39_[-1]_47 chr11:56131189-56131289 4.5e-08 35_[-1]_51 chr6:92787211-92787311 6e-08 73_[-1]_13 chr2:43902532-43902632 8.2e-08 37_[+1]_49 chr5:149335779-149335879 1.1e-07 78_[+1]_8 chr9:77596244-77596344 1.1e-07 83_[-1]_3 chr2:117180438-117180538 3e-07 62_[+1]_24 chr11:35451529-35451629 3.3e-07 49_[+1]_37 chr7:51270505-51270605 3.6e-07 17_[+1]_69 chr2:126362956-126363056 4.1e-07 41_[+1]_45 chr1:162359171-162359271 4.6e-07 61_[-1]_25 chr1:123974600-123974700 8e-07 16_[-1]_70 chr2:169849035-169849135 8.8e-07 52_[+1]_34 chr4:32027079-32027179 8.8e-07 2_[-1]_84 chr15:24596185-24596285 1e-06 65_[-1]_21 chr15:77257312-77257412 1.2e-06 54_[-1]_32 chr12:29187550-29187650 1.4e-06 16_[-1]_70 chr4:81564302-81564402 1.4e-06 24_[-1]_62 chr4:77558781-77558881 1.6e-06 32_[+1]_54 chr6:29649755-29649855 1.8e-06 34_[+1]_52 chr18:73932862-73932962 1.8e-06 39_[-1]_47 chr9:23249972-23250072 2.2e-06 54_[+1]_32 chr1:44741197-44741297 2.4e-06 58_[+1]_28 chr1:169459285-169459385 2.6e-06 81_[+1]_5 chr19:33226935-33227035 2.6e-06 49_[+1]_37 chr2:106355821-106355921 2.9e-06 30_[-1]_56 chr15:67513696-67513796 4.5e-06 66_[+1]_20 chr6:67158707-67158807 5.2e-06 50_[+1]_36 chr18:52935095-52935195 8.4e-06 61_[+1]_25 chr18:25658881-25658981 8.4e-06 32_[-1]_54 chr16:15084716-15084816 9.1e-06 72_[+1]_14 chr4:136755382-136755482 1.1e-05 47_[+1]_39 chr4:55651060-55651160 1.1e-05 28_[-1]_58 chr3:18625440-18625540 1.3e-05 31_[-1]_55 chr11:84642119-84642219 1.6e-05 39_[-1]_47 chr2:10831241-10831341 2.2e-05 41_[-1]_45 chr10:40751071-40751171 4.4e-05 21_[-1]_65 chr16:21333128-21333228 5.9e-05 5_[-1]_81 chr16:77644291-77644391 6.7e-05 74_[+1]_12 chr1:161170618-161170718 0.00013 28_[-1]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCCTCTRSTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYGCCCTCTRSTGG width=14 seqs=47 chr17:8468671-8468771 ( 19) GCGCCCTCTGGTGG 1 chr4:125962674-125962774 ( 62) GCGCCCTCTGGTGG 1 chr2:133020359-133020459 ( 69) GCGCCCTCTGCTGG 1 chr15:89623502-89623602 ( 62) CTGCCCTCTGGTGG 1 chr5:47014289-47014389 ( 51) CTGCCCTCTGCTGG 1 chr3:107357125-107357225 ( 5) CTGCCCTCTGCTGG 1 chr12:56404801-56404901 ( 51) CTGCCCTCTGCTGG 1 chr14:106439254-10643935 ( 40) CTGCCCTCTAGTGG 1 chr11:56131189-56131289 ( 36) GCGCCATCTGGTGG 1 chr6:92787211-92787311 ( 74) GCGCCCTCTTCTGG 1 chr2:43902532-43902632 ( 38) CTGCCATCTGGTGG 1 chr5:149335779-149335879 ( 79) GCGCCATCTAGTGG 1 chr9:77596244-77596344 ( 84) CTGCCCCCTAGTGG 1 chr2:117180438-117180538 ( 63) GTGCCACCTGCTGG 1 chr11:35451529-35451629 ( 50) CTGCCACCTGCTGG 1 chr7:51270505-51270605 ( 18) GCGCCCTCTAGTGT 1 chr2:126362956-126363056 ( 42) CTGCCCTCTGCTGT 1 chr1:162359171-162359271 ( 62) CTGCCATCTTCTGG 1 chr1:123974600-123974700 ( 17) GCGCCCCCCTGTGG 1 chr2:169849035-169849135 ( 53) GCACCCTCTGCTGG 1 chr4:32027079-32027179 ( 3) ATGCCCTCTTGTGG 1 chr15:24596185-24596285 ( 66) CTGCCCCCTGCTGT 1 chr15:77257312-77257412 ( 55) GCGCCCCCTACTGT 1 chr12:29187550-29187650 ( 17) ATGCCATCTGCTGG 1 chr4:81564302-81564402 ( 25) GCGCCCTCTACTGA 1 chr4:77558781-77558881 ( 33) GTACCCTCTAGTGG 1 chr6:29649755-29649855 ( 35) CCGCCCTCTTGTGA 1 chr18:73932862-73932962 ( 40) CCGCCATCTGCTCG 1 chr9:23249972-23250072 ( 55) CTGCCATCTGGCGG 1 chr1:44741197-44741297 ( 59) CTGCTCTCTGCTGG 1 chr1:169459285-169459385 ( 82) GTGCCCTCTAGAGG 1 chr19:33226935-33227035 ( 50) CTGCCCCCTAGCGG 1 chr2:106355821-106355921 ( 31) GTGCCATCTTGTGT 1 chr15:67513696-67513796 ( 67) GTGCCACCCTCTGG 1 chr6:67158707-67158807 ( 51) GCGCCCCCATGTGG 1 chr18:52935095-52935195 ( 62) ACGCCCCCTAGTGC 1 chr18:25658881-25658981 ( 33) GCGCCCGCCAGTGC 1 chr16:15084716-15084816 ( 73) CCGCGCTGCGCTGG 1 chr4:136755382-136755482 ( 48) CCGCCCGCGGCTCG 1 chr4:55651060-55651160 ( 29) GCGGCCACTGGTGG 1 chr3:18625440-18625540 ( 32) GCGCGCTGCACTGG 1 chr11:84642119-84642219 ( 40) GCGCGCGGTCGTGG 1 chr2:10831241-10831341 ( 42) CCGGCATCCCGTGG 1 chr10:40751071-40751171 ( 22) GTGCGCGGGAGTGG 1 chr16:21333128-21333228 ( 6) CTGCGCGATCGTGG 1 chr16:77644291-77644391 ( 75) GCGCGCGCGCGTGC 1 chr1:161170618-161170718 ( 29) CCGCCGCCGCGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCCTCTRSTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 11.6895 E= 2.0e-029 -210 98 111 -1220 -1220 117 -1220 84 -268 -1220 208 -1220 -1220 208 -241 -1220 -1220 191 -83 -368 -10 167 -341 -1220 -368 5 -83 117 -368 198 -141 -1220 -368 -83 -141 149 2 -109 98 -68 -1220 91 134 -1220 -368 -241 -1220 178 -1220 -183 205 -1220 -268 -183 180 -136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCCTCTRSTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 47 E= 2.0e-029 0.063830 0.446809 0.489362 0.000000 0.000000 0.510638 0.000000 0.489362 0.042553 0.000000 0.957447 0.000000 0.000000 0.957447 0.042553 0.000000 0.000000 0.851064 0.127660 0.021277 0.255319 0.723404 0.021277 0.000000 0.021277 0.234043 0.127660 0.617021 0.021277 0.893617 0.085106 0.000000 0.021277 0.127660 0.085106 0.765957 0.276596 0.106383 0.446809 0.170213 0.000000 0.425532 0.574468 0.000000 0.021277 0.042553 0.000000 0.936170 0.000000 0.063830 0.936170 0.000000 0.042553 0.063830 0.787234 0.106383 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCCTCTRSTGG MEME-1 regular expression -------------------------------------------------------------------------------- [GC][CT]GCC[CA][TC]CT[GA][GC]TGG -------------------------------------------------------------------------------- Time 532.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GVNGGSNGGMGGRGGSAGGGG MEME-2 width = 21 sites = 46 llr = 529 E-value = 9.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVNGGSNGGMGGRGGSAGGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :23:2:3:2421322:6:1:3 pos.-specific C 25221331:4:31124:312: probability G 633855298286676526787 matrix T 2:2:112:::::::::222:: bits 2.1 1.9 1.7 1.5 * * Relative 1.3 * ** * ** Entropy 1.1 * ** * * ** (16.6 bits) 0.9 * ** ** * * ** 0.6 ** * * ** ****** **** 0.4 ** *** ************** 0.2 ** *** ************** 0.0 --------------------- Multilevel GCAGGGAGGAGGGGGGAGGGG consensus CGGCACC CACA AC C A sequence AC T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNGGSNGGMGGRGGSAGGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr3:107357125-107357225 + 72 2.23e-12 CTTCTGGCGG GGAGGGGGGCGGGGGGAGGGG TGTGGGGA chr2:146745724-146745824 + 24 2.40e-10 TGGCCTTGCG GGAGGGAGGAGCAGGGAGGGG AAGAGGAGGG chr2:21141621-21141721 + 26 5.61e-10 GGGGTGCAAC GAAGGGAGGAGAGGGGAGGGG CGCGAGCTAA chr13:29014500-29014600 - 65 4.51e-09 AACTGAGGAG TGCGGGCGGGGGGGGGGGGGG TTACGCCAGT chr10:21398940-21399040 - 20 3.07e-08 AGTGGACTGA GCCGTGTGGAGGAGGGATGGG AGGAGGTGTG chr19:47348487-47348587 - 45 8.23e-08 GAGGGAGGCT TCGGGCTGGAGGGAGGATGGG GAGGGAGGCT chr4:46891368-46891468 + 53 9.41e-08 CAGTACAGGA GCAGAGAGAGGGAGGGAGGGA GAAATCCCAG chr6:88760635-88760735 + 3 1.59e-07 TA GGAGCTGGGCGCAGGCAGGGG CAACATTATG chr2:68989030-68989130 - 21 1.80e-07 TGTAACTGGT GCTGGGTGGCGGGGACTGTGA GGAAGCTGAC chr12:12221141-12221241 - 66 1.80e-07 GAGGGAGGAT GGAGGAAGGAGGGAGGAGGGA GTCAGAATGG chr18:56756251-56756351 - 46 2.04e-07 AATACTACAG GGTGGCTGGCAGGGAGACGGA GCAGCCAGAC chr2:30707958-30708058 + 25 2.61e-07 ccggcgcgag cccgggcggcggcgccagcgg ccccgAGAGC chr18:55548971-55549071 - 64 2.61e-07 TATGAGCGTG GGAGTGTGGAGGAGGCAGTGA AACCTCCCCC chr3:37896931-37897031 - 21 5.28e-07 CAAAGCTTCC TGAGAGCGGCGCAGGAAGGGG CTCCTGACGC chr16:15084716-15084816 + 28 7.37e-07 GCGCACCGGG GCAGCGCGGAGGCGGCCCGGG AGCCGGCCTC chr18:60891140-60891240 - 27 8.22e-07 TAGAAACTGT GAGGACTGGAGAGGACAGTGG GAGGCAGTAA chr2:174598486-174598586 - 77 8.22e-07 GTA GCAGAGGGACACGGGGTGGGA GTGGGGGTTA chr6:103613113-103613213 + 63 9.16e-07 gctgccacag cagcggcggaggcggcggtgg cagcagcagc chr5:128482979-128483079 + 65 1.02e-06 AAGATGCGAA TCAGAACGGAAGGGGGTGGGG GATCCTGCAG chr9:122629082-122629182 + 66 1.13e-06 GCCTCTTTAG CACGCCAGGCAGGGGCTCGGG TGGGTGTGAG chr2:30712000-30712100 - 36 1.54e-06 CCCCGGCCCT GACGTCAGGCGCGGCCAGCGG AGCCTGGTTC chr5:88958831-88958931 + 71 1.89e-06 CGCTGAGCAA TAGGGGAGAGGGAGGCTGGGA AGAGACAGG chr4:136755382-136755482 + 71 2.30e-06 GGCCGAGCGT GCTCGCAGGGGCCGAGGCGGG ATTCGGCGC chr15:67220788-67220888 + 4 2.30e-06 ATT CAGGGGTGGGGAAGGGAGAGA TGACAAACTG chrX:21361330-21361430 - 78 2.53e-06 TG TGGCAGCGGCGGCGGCTGTGG CTTCTGGCTG chr13:113269746-11326984 + 59 2.79e-06 TGGATCACAA GCAGGCGGGAGAGGGTTGTGG AAAAGCCAGC chr18:36153533-36153633 + 19 3.06e-06 TGGAAACACC GAAGGCGGGCAGGCAGGCGGA ATGATTCTGG chr9:49739824-49739924 - 10 3.06e-06 ACAGGCTGTT CCTGGTGGGAGGAACCACGGG ATTCAGCTC chr10:58370814-58370914 - 76 3.36e-06 CCCT GGGGGTTGGAGGGGAGTCAGA ATTCCAAAGG chr4:62991204-62991304 - 26 3.36e-06 GGGAAACATC GGCCAGCCGAGAAGACAGGGG ACAACTGGAG chr14:77341569-77341669 - 78 4.05e-06 GG TGGGGGGGCGGGGGGGATGCG TTCAAATTCT chr11:84642119-84642219 + 7 4.43e-06 AGAAGT GCTGCGGGGAGGGAGCAGTCA GACATCCTCT chr13:111725271-11172537 - 69 6.31e-06 AATGGGCTGA GGCGGGCGGGCCGCGGAGGCG GAGCCTGAAG chr18:68493806-68493906 - 36 7.48e-06 CACTGCTTGT CAGGGCTCCAAGGGGGACGGG AAGCAACCCT chr6:131433520-131433620 + 63 1.04e-05 GTCAGACGCC GCCGCCACGGAGGAGGAGGCG GAAGTCACAG chr1:58652518-58652618 - 7 1.04e-05 ACTTAGGGTC CCGGGCTCGCGCAGCGTCGCG AGTAGC chr16:73367486-73367586 - 68 1.13e-05 AATATAGCTT CCACACAGAAGCGGCGACGCG TTCTTGAAAT chr9:116424970-116425070 + 29 1.13e-05 TAGAGAAGCA GCCGAGAGGCGGCCTGAGAGG CAGGTCCTCA chr4:55651060-55651160 + 69 1.22e-05 ATGTTTCCCT TCAGTCGGGAGGGGAAATGGA GGGAGGCCAG chr15:82938152-82938252 - 25 1.32e-05 CTCCTCGGAG GGCCTGCGACGCGGCCGTGGG GAAATCACTT chr9:34699194-34699294 - 50 1.94e-05 AGAAAATCAG CATCGCCCGAGGAAAGAGGGA CATGCATTTA chr13:112188151-11218825 + 40 2.08e-05 GAGCTGGGCA GCTCAGCGACACAGCCATGGG TTGTCTAGGG chr10:40751071-40751171 + 36 2.24e-05 TCCCGcgcac gcacgcaggcacgcacgcagg cacgcaggca chr14:99894023-99894123 + 42 2.24e-05 CTTAGCATCA CCGCGTGGGAGGGAGCGTAGG TGTAAGTGGG chr2:83332693-83332793 + 14 2.98e-05 TTAGCAAGAT TAGGAGAGACAGACACACGGG AGAGATATAG chr11:62602514-62602614 + 45 3.42e-05 ACGGGGGAGG CCTGGGTCGCGAGGCGGGCCG CTGGAAGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNGGSNGGMGGRGGSAGGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:107357125-107357225 2.2e-12 71_[+2]_8 chr2:146745724-146745824 2.4e-10 23_[+2]_56 chr2:21141621-21141721 5.6e-10 25_[+2]_54 chr13:29014500-29014600 4.5e-09 64_[-2]_15 chr10:21398940-21399040 3.1e-08 19_[-2]_60 chr19:47348487-47348587 8.2e-08 44_[-2]_35 chr4:46891368-46891468 9.4e-08 52_[+2]_27 chr6:88760635-88760735 1.6e-07 2_[+2]_77 chr2:68989030-68989130 1.8e-07 20_[-2]_59 chr12:12221141-12221241 1.8e-07 65_[-2]_14 chr18:56756251-56756351 2e-07 45_[-2]_34 chr2:30707958-30708058 2.6e-07 24_[+2]_55 chr18:55548971-55549071 2.6e-07 63_[-2]_16 chr3:37896931-37897031 5.3e-07 20_[-2]_59 chr16:15084716-15084816 7.4e-07 27_[+2]_52 chr18:60891140-60891240 8.2e-07 26_[-2]_53 chr2:174598486-174598586 8.2e-07 76_[-2]_3 chr6:103613113-103613213 9.2e-07 62_[+2]_17 chr5:128482979-128483079 1e-06 64_[+2]_15 chr9:122629082-122629182 1.1e-06 65_[+2]_14 chr2:30712000-30712100 1.5e-06 35_[-2]_44 chr5:88958831-88958931 1.9e-06 70_[+2]_9 chr4:136755382-136755482 2.3e-06 70_[+2]_9 chr15:67220788-67220888 2.3e-06 3_[+2]_76 chrX:21361330-21361430 2.5e-06 77_[-2]_2 chr13:113269746-11326984 2.8e-06 58_[+2]_21 chr18:36153533-36153633 3.1e-06 18_[+2]_61 chr9:49739824-49739924 3.1e-06 9_[-2]_70 chr10:58370814-58370914 3.4e-06 75_[-2]_4 chr4:62991204-62991304 3.4e-06 25_[-2]_54 chr14:77341569-77341669 4e-06 77_[-2]_2 chr11:84642119-84642219 4.4e-06 6_[+2]_73 chr13:111725271-11172537 6.3e-06 68_[-2]_11 chr18:68493806-68493906 7.5e-06 35_[-2]_44 chr6:131433520-131433620 1e-05 62_[+2]_17 chr1:58652518-58652618 1e-05 6_[-2]_73 chr16:73367486-73367586 1.1e-05 67_[-2]_12 chr9:116424970-116425070 1.1e-05 28_[+2]_51 chr4:55651060-55651160 1.2e-05 68_[+2]_11 chr15:82938152-82938252 1.3e-05 24_[-2]_55 chr9:34699194-34699294 1.9e-05 49_[-2]_30 chr13:112188151-11218825 2.1e-05 39_[+2]_40 chr10:40751071-40751171 2.2e-05 35_[+2]_44 chr14:99894023-99894123 2.2e-05 41_[+2]_38 chr2:83332693-83332793 3e-05 13_[+2]_66 chr11:62602514-62602614 3.4e-05 44_[+2]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNGGSNGGMGGRGGSAGGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVNGGSNGGMGGRGGSAGGGG width=21 seqs=46 chr3:107357125-107357225 ( 72) GGAGGGGGGCGGGGGGAGGGG 1 chr2:146745724-146745824 ( 24) GGAGGGAGGAGCAGGGAGGGG 1 chr2:21141621-21141721 ( 26) GAAGGGAGGAGAGGGGAGGGG 1 chr13:29014500-29014600 ( 65) TGCGGGCGGGGGGGGGGGGGG 1 chr10:21398940-21399040 ( 20) GCCGTGTGGAGGAGGGATGGG 1 chr19:47348487-47348587 ( 45) TCGGGCTGGAGGGAGGATGGG 1 chr4:46891368-46891468 ( 53) GCAGAGAGAGGGAGGGAGGGA 1 chr6:88760635-88760735 ( 3) GGAGCTGGGCGCAGGCAGGGG 1 chr2:68989030-68989130 ( 21) GCTGGGTGGCGGGGACTGTGA 1 chr12:12221141-12221241 ( 66) GGAGGAAGGAGGGAGGAGGGA 1 chr18:56756251-56756351 ( 46) GGTGGCTGGCAGGGAGACGGA 1 chr2:30707958-30708058 ( 25) CCCGGGCGGCGGCGCCAGCGG 1 chr18:55548971-55549071 ( 64) GGAGTGTGGAGGAGGCAGTGA 1 chr3:37896931-37897031 ( 21) TGAGAGCGGCGCAGGAAGGGG 1 chr16:15084716-15084816 ( 28) GCAGCGCGGAGGCGGCCCGGG 1 chr18:60891140-60891240 ( 27) GAGGACTGGAGAGGACAGTGG 1 chr2:174598486-174598586 ( 77) GCAGAGGGACACGGGGTGGGA 1 chr6:103613113-103613213 ( 63) CAGCGGCGGAGGCGGCGGTGG 1 chr5:128482979-128483079 ( 65) TCAGAACGGAAGGGGGTGGGG 1 chr9:122629082-122629182 ( 66) CACGCCAGGCAGGGGCTCGGG 1 chr2:30712000-30712100 ( 36) GACGTCAGGCGCGGCCAGCGG 1 chr5:88958831-88958931 ( 71) TAGGGGAGAGGGAGGCTGGGA 1 chr4:136755382-136755482 ( 71) GCTCGCAGGGGCCGAGGCGGG 1 chr15:67220788-67220888 ( 4) CAGGGGTGGGGAAGGGAGAGA 1 chrX:21361330-21361430 ( 78) TGGCAGCGGCGGCGGCTGTGG 1 chr13:113269746-11326984 ( 59) GCAGGCGGGAGAGGGTTGTGG 1 chr18:36153533-36153633 ( 19) GAAGGCGGGCAGGCAGGCGGA 1 chr9:49739824-49739924 ( 10) CCTGGTGGGAGGAACCACGGG 1 chr10:58370814-58370914 ( 76) GGGGGTTGGAGGGGAGTCAGA 1 chr4:62991204-62991304 ( 26) GGCCAGCCGAGAAGACAGGGG 1 chr14:77341569-77341669 ( 78) TGGGGGGGCGGGGGGGATGCG 1 chr11:84642119-84642219 ( 7) GCTGCGGGGAGGGAGCAGTCA 1 chr13:111725271-11172537 ( 69) GGCGGGCGGGCCGCGGAGGCG 1 chr18:68493806-68493906 ( 36) CAGGGCTCCAAGGGGGACGGG 1 chr6:131433520-131433620 ( 63) GCCGCCACGGAGGAGGAGGCG 1 chr1:58652518-58652618 ( 7) CCGGGCTCGCGCAGCGTCGCG 1 chr16:73367486-73367586 ( 68) CCACACAGAAGCGGCGACGCG 1 chr9:116424970-116425070 ( 29) GCCGAGAGGCGGCCTGAGAGG 1 chr4:55651060-55651160 ( 69) TCAGTCGGGAGGGGAAATGGA 1 chr15:82938152-82938252 ( 25) GGCCTGCGACGCGGCCGTGGG 1 chr9:34699194-34699294 ( 50) CATCGCCCGAGGAAAGAGGGA 1 chr13:112188151-11218825 ( 40) GCTCAGCGACACAGCCATGGG 1 chr10:40751071-40751171 ( 36) GCACGCAGGCACGCACGCAGG 1 chr14:99894023-99894123 ( 42) CCGCGTGGGAGGGAGCGTAGG 1 chr2:83332693-83332793 ( 14) TAGGAGAGACAGACACACGGG 1 chr11:62602514-62602614 ( 45) CCTGGGTCGCGAGGCGGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNGGSNGGMGGRGGSAGGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.9181 E= 9.2e-009 -1217 8 132 -48 -19 101 43 -1217 35 -6 20 -65 -1217 -6 179 -1217 -19 -106 126 -133 -265 53 126 -165 5 20 -6 -19 -1217 -80 194 -1217 -85 -238 183 -1217 67 79 -38 -1217 -33 -338 175 -1217 -107 20 143 -1217 15 -80 132 -1217 -85 -106 171 -1217 -19 -38 132 -365 -265 87 120 -365 115 -338 -38 -48 -1217 20 137 -85 -133 -180 157 -85 -1217 -57 190 -1217 5 -1217 166 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNGGSNGGMGGRGGSAGGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 46 E= 9.2e-009 0.000000 0.239130 0.565217 0.195652 0.239130 0.456522 0.304348 0.000000 0.347826 0.217391 0.260870 0.173913 0.000000 0.217391 0.782609 0.000000 0.239130 0.108696 0.543478 0.108696 0.043478 0.326087 0.543478 0.086957 0.282609 0.260870 0.217391 0.239130 0.000000 0.130435 0.869565 0.000000 0.152174 0.043478 0.804348 0.000000 0.434783 0.391304 0.173913 0.000000 0.217391 0.021739 0.760870 0.000000 0.130435 0.260870 0.608696 0.000000 0.304348 0.130435 0.565217 0.000000 0.152174 0.108696 0.739130 0.000000 0.239130 0.173913 0.565217 0.021739 0.043478 0.413043 0.521739 0.021739 0.608696 0.021739 0.173913 0.195652 0.000000 0.260870 0.586957 0.152174 0.108696 0.065217 0.673913 0.152174 0.000000 0.152174 0.847826 0.000000 0.282609 0.000000 0.717391 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVNGGSNGGMGGRGGSAGGGG MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CGA][AGC][GC][GA][GC][ACTG]GG[AC][GA][GC][GA]G[GA][GC]A[GC]GG[GA] -------------------------------------------------------------------------------- Time 1015.46 secs. ******************************************************************************** ******************************************************************************** MOTIF MGCACACACACACAC MEME-3 width = 15 sites = 29 llr = 361 E-value = 8.4e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif MGCACACACACACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 52:817:817:a:9: pos.-specific C 419:81a:719:a:7 probability G 161::2::2:1::12 matrix T :1:21::2:1::::: bits 2.1 * 1.9 * * 1.7 * ** 1.5 * * *** Relative 1.3 * * **** Entropy 1.1 *** ** ***** (17.9 bits) 0.9 *** *** ***** 0.6 * ************* 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel AGCACACACACACAC consensus CA T G TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCACACACACACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr11:84642119-84642219 + 63 6.63e-10 CGTGCGCGCG CGcacacacacacac acacacacac chr16:92954393-92954493 + 84 6.63e-10 CGTGcacaca cgcacacacacacac ac chr12:102064880-10206498 - 45 3.47e-09 GGTTTCCACA CACACACACACACAC CCAGAGTTTC chr1:175303241-175303341 + 76 5.75e-09 cacatgatgc aacacacacacacac acattgtctg chr14:12571681-12571781 + 82 1.89e-08 cacacacaca cacacgcacacacac acac chr6:53022043-53022143 - 57 2.26e-08 TGAGTCACCA ATCACACACACACAC TTTCAGACTT chr16:77644291-77644391 - 57 5.57e-08 CGCGCGCACA GGCACACAGACACAC GGAGAGAGTC chr15:41492073-41492173 + 19 1.55e-07 ATGCCATCAG AGCACACAGAGACAC GCAGGATGAG chr1:162359171-162359271 - 37 2.35e-07 GGGAGTCTGC AGCATCCACACACAC TGGATTAAAC chr15:12247338-12247438 + 84 2.61e-07 ctgtgccacc agcacccaaacacac gc chr5:57898992-57899092 - 57 2.90e-07 AGAGAATGTG CCCACACTCACACAG CTGCTGAGGG chr16:49908263-49908363 - 68 4.78e-07 TTCATTGCAA AGCTCACACCCACAG CACCCACAAA chr13:52875577-52875677 + 21 5.30e-07 ACTaaagcca agcacacactcacgg catgaaccat chr4:9399577-9399677 + 43 5.30e-07 CCCTGGCTCT GGCATACTCACACAC ATTCACTGAA chr14:45561644-45561744 + 82 5.88e-07 GACTCACACG AGCACACTCCCACGC AATT chr10:40751071-40751171 + 63 1.03e-06 caggcacgca ggcacgcacgcacAC CACCTCTCCC chr1:176239483-176239583 - 10 1.11e-06 CTGGAGCCTG CTCACACACATACAC TTGAAGAGA chr8:33468443-33468543 - 55 1.44e-06 CATCAAGGAG AGAACGCACACACAG CTGTGGAGCC chr12:100421534-10042163 - 74 1.56e-06 AGCTGGGGAC AGCTCGCACTCACGC CAGAGTCTTC chr18:23461056-23461156 - 33 1.84e-06 TTTGATGTCT AGCAAGCTCACACAG CTGAGCTCCC chr6:67725515-67725615 - 33 2.98e-06 GCCCCTCCTT CTCACACAGACACAA GATGCTCTCT chr11:30720843-30720943 + 14 4.02e-06 TTTTAAATAG CACATACAATCACAC CCACTCTTCT chr6:22794206-22794306 + 77 4.33e-06 CCTGCCAGAG AGCTCGCACACAGAG AGATGCCTT chr1:60860525-60860625 + 25 4.33e-06 TCCTGAAAAT CCCACCCTGACACAG CAAATTTAGA chr16:41696472-41696572 - 57 5.34e-06 CAGAAAAAAA AAGTCACAAACACAC TCAAAAGCTG chr2:168626220-168626320 - 53 7.03e-06 GCTGGGCCAG CACACACAGAGCCAC GGAGCCTCTG chr15:27769050-27769150 - 39 7.03e-06 AGAGGCATGA CGCAAACTCTGACAC TTACAGAAAA chr7:111495876-111495976 + 44 1.04e-05 ACCCAAGCCA ACCTTACTCCCACAC ATGTAACTGC chr13:110062153-11006225 - 44 1.50e-05 CCTGGAAAAG CAGTCGCAGACACGC CCCATGCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCACACACACACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:84642119-84642219 6.6e-10 62_[+3]_23 chr16:92954393-92954493 6.6e-10 83_[+3]_2 chr12:102064880-10206498 3.5e-09 44_[-3]_41 chr1:175303241-175303341 5.8e-09 75_[+3]_10 chr14:12571681-12571781 1.9e-08 81_[+3]_4 chr6:53022043-53022143 2.3e-08 56_[-3]_29 chr16:77644291-77644391 5.6e-08 56_[-3]_29 chr15:41492073-41492173 1.5e-07 18_[+3]_67 chr1:162359171-162359271 2.4e-07 36_[-3]_49 chr15:12247338-12247438 2.6e-07 83_[+3]_2 chr5:57898992-57899092 2.9e-07 56_[-3]_29 chr16:49908263-49908363 4.8e-07 67_[-3]_18 chr13:52875577-52875677 5.3e-07 20_[+3]_65 chr4:9399577-9399677 5.3e-07 42_[+3]_43 chr14:45561644-45561744 5.9e-07 81_[+3]_4 chr10:40751071-40751171 1e-06 62_[+3]_23 chr1:176239483-176239583 1.1e-06 9_[-3]_76 chr8:33468443-33468543 1.4e-06 54_[-3]_31 chr12:100421534-10042163 1.6e-06 73_[-3]_12 chr18:23461056-23461156 1.8e-06 32_[-3]_53 chr6:67725515-67725615 3e-06 32_[-3]_53 chr11:30720843-30720943 4e-06 13_[+3]_72 chr6:22794206-22794306 4.3e-06 76_[+3]_9 chr1:60860525-60860625 4.3e-06 24_[+3]_61 chr16:41696472-41696572 5.3e-06 56_[-3]_29 chr2:168626220-168626320 7e-06 52_[-3]_33 chr15:27769050-27769150 7e-06 38_[-3]_47 chr7:111495876-111495976 1e-05 43_[+3]_42 chr13:110062153-11006225 1.5e-05 43_[-3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCACACACACACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MGCACACACACACAC width=15 seqs=29 chr11:84642119-84642219 ( 63) CGCACACACACACAC 1 chr16:92954393-92954493 ( 84) CGCACACACACACAC 1 chr12:102064880-10206498 ( 45) CACACACACACACAC 1 chr1:175303241-175303341 ( 76) AACACACACACACAC 1 chr14:12571681-12571781 ( 82) CACACGCACACACAC 1 chr6:53022043-53022143 ( 57) ATCACACACACACAC 1 chr16:77644291-77644391 ( 57) GGCACACAGACACAC 1 chr15:41492073-41492173 ( 19) AGCACACAGAGACAC 1 chr1:162359171-162359271 ( 37) AGCATCCACACACAC 1 chr15:12247338-12247438 ( 84) AGCACCCAAACACAC 1 chr5:57898992-57899092 ( 57) CCCACACTCACACAG 1 chr16:49908263-49908363 ( 68) AGCTCACACCCACAG 1 chr13:52875577-52875677 ( 21) AGCACACACTCACGG 1 chr4:9399577-9399677 ( 43) GGCATACTCACACAC 1 chr14:45561644-45561744 ( 82) AGCACACTCCCACGC 1 chr10:40751071-40751171 ( 63) GGCACGCACGCACAC 1 chr1:176239483-176239583 ( 10) CTCACACACATACAC 1 chr8:33468443-33468543 ( 55) AGAACGCACACACAG 1 chr12:100421534-10042163 ( 74) AGCTCGCACTCACGC 1 chr18:23461056-23461156 ( 33) AGCAAGCTCACACAG 1 chr6:67725515-67725615 ( 33) CTCACACAGACACAA 1 chr11:30720843-30720943 ( 14) CACATACAATCACAC 1 chr6:22794206-22794306 ( 77) AGCTCGCACACAGAG 1 chr1:60860525-60860625 ( 25) CCCACCCTGACACAG 1 chr16:41696472-41696572 ( 57) AAGTCACAAACACAC 1 chr2:168626220-168626320 ( 53) CACACACAGAGCCAC 1 chr15:27769050-27769150 ( 39) CGCAAACTCTGACAC 1 chr7:111495876-111495976 ( 44) ACCTTACTCCCACAC 1 chr13:110062153-11006225 ( 44) CAGTCGCAGACACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCACACACACACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 12.0459 E= 8.4e-011 82 87 -113 -1150 -18 -113 128 -140 -298 198 -172 -1150 154 -1150 -1150 -40 -199 181 -1150 -99 126 -113 9 -1150 -1150 214 -1150 -1150 147 -1150 -1150 -18 -140 161 -13 -1150 140 -113 -271 -99 -1150 193 -113 -298 182 -271 -1150 -1150 -1150 209 -271 -1150 166 -1150 -72 -1150 -298 168 9 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCACACACACACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 29 E= 8.4e-011 0.482759 0.413793 0.103448 0.000000 0.241379 0.103448 0.551724 0.103448 0.034483 0.896552 0.068966 0.000000 0.793103 0.000000 0.000000 0.206897 0.068966 0.793103 0.000000 0.137931 0.655172 0.103448 0.241379 0.000000 0.000000 1.000000 0.000000 0.000000 0.758621 0.000000 0.000000 0.241379 0.103448 0.689655 0.206897 0.000000 0.724138 0.103448 0.034483 0.137931 0.000000 0.862069 0.103448 0.034483 0.965517 0.034483 0.000000 0.000000 0.000000 0.965517 0.034483 0.000000 0.862069 0.000000 0.137931 0.000000 0.034483 0.724138 0.241379 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MGCACACACACACAC MEME-3 regular expression -------------------------------------------------------------------------------- [AC][GA]C[AT]C[AG]C[AT][CG]ACACA[CG] -------------------------------------------------------------------------------- Time 1477.94 secs. ******************************************************************************** ******************************************************************************** MOTIF SWKCTSTG MEME-4 width = 8 sites = 173 llr = 1313 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SWKCTSTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :4:::::: pos.-specific C 71:a:42: probability G 317::6:a matrix T :43:a:8: bits 2.1 * * 1.9 * * 1.7 ** * 1.5 ** * Relative 1.3 * ***** Entropy 1.1 * ****** (11.0 bits) 0.9 * ****** 0.6 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel CAGCTGTG consensus GTT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWKCTSTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr15:58588993-58589093 + 57 2.45e-05 CAAAGGCAAA CAGCTGTG CTCAATTTGA chr13:25982146-25982246 + 3 2.45e-05 AG CTGCTGTG TTATGATGAT chr8:84456815-84456915 + 15 2.45e-05 TTGCTCAGCA CAGCTGTG AGCGGGGTCC chr10:41830833-41830933 + 22 2.45e-05 CAGCAGTTAG CTGCTGTG AGCACTAGGT chr18:87121234-87121334 + 70 2.45e-05 CCCTCACAGC CAGCTGTG GCCTCTGATG chr9:29316787-29316887 - 45 2.45e-05 TTGGCGAGTT CAGCTGTG AGTCCAGTGG chr17:64901414-64901514 + 2 2.45e-05 G CAGCTGTG ACTCACAGAC chr18:26104223-26104323 - 38 2.45e-05 CAAAGTCTGC CTGCTGTG CAGCTCAAGC chr17:8468671-8468771 - 78 2.45e-05 TAGCTAGGCT CTGCTGTG GCTCCAGCCT chr2:30712000-30712100 - 78 2.45e-05 GGCATCGTCC CAGCTGTG CGGCCTGGCG chr10:74053021-74053121 + 48 2.45e-05 AAGTGTAGCT CTGCTGTG CGATGCAGCT chr3:129614033-129614133 + 66 2.45e-05 CCCATGTGTC CTGCTGTG CCCCAGCACA chr9:103867760-103867860 + 4 2.45e-05 TTT CAGCTGTG TAAAATTTGG chr14:105416903-10541700 - 21 2.45e-05 CGATGGGAAG CAGCTGTG CCTGCCTCCA chr9:42764782-42764882 - 48 2.45e-05 TAATTGTCTT CAGCTGTG TGGGGCTGCA chr6:67725515-67725615 + 81 2.45e-05 TAATTCTTTG CAGCTGTG AGCTCTGGTC chr3:137821863-137821963 + 34 2.45e-05 AATCACAAGC CAGCTGTG CATGCTCCTC chr1:97640406-97640506 - 33 2.45e-05 TCTGTGTCCA CAGCTGTG TGGTGAAGTG chr6:33891898-33891998 + 25 2.45e-05 gtggaggaag cagctgtg tacagtggga chr11:88132096-88132196 + 20 2.45e-05 GAccgtggag cagctgtg ttagcaccac chr9:20702034-20702134 + 5 2.45e-05 CATA CAGCTGTG ACCTCCATAT chr13:28758934-28759034 + 80 2.45e-05 aagacaggca cagctgtg tgctccagaa chr8:8354914-8355014 - 24 2.45e-05 GCCAGCTCAG CAGCTGTG CATGGGCTCA chr8:52704001-52704101 - 83 2.45e-05 TTCTAGGAGT CAGCTGTG TTCCCTAAGA chr13:52278733-52278833 + 44 2.45e-05 gaatcactcc cagctgtg atggtttgga chr12:7191834-7191934 + 2 2.45e-05 A CTGCTGTG AGCTTCTCCA chr3:55280946-55281046 - 71 4.91e-05 CAAGGCGAGC CTGCTCTG AACAGCATCC chr15:41193181-41193281 - 66 4.91e-05 CTGCTAAATT CTGCTCTG CAGATGTTCA chr15:31175843-31175943 + 5 4.91e-05 tgct ctgctctg ctctgctctg chr19:24054787-24054887 + 51 4.91e-05 AAACTCCCAT CTGCTCTG TTGAGTGAAG chr6:18711170-18711270 - 77 4.91e-05 AGCTCAGGCT CTGCTCTG TCTTGTCTTC chr19:47348487-47348587 - 22 4.91e-05 AGGCTTCAGG CTGCTCTG CTCGCTGCCA chr15:38177331-38177431 - 31 4.91e-05 GGTTCTGTAC CTGCTCTG CAACACTTAG chr2:168626220-168626320 - 38 4.91e-05 CACGGAGCCT CTGCTCTG CTAGGGCAGC chr17:30117861-30117961 + 26 4.91e-05 TAAAGTGCTG CAGCTCTG AAGGGCATCT chr19:58059546-58059646 + 17 4.91e-05 TGCGTCTAAT CTGCTCTG TTTCAGGATT chr18:23461056-23461156 + 8 4.91e-05 TGGCCGG CTGCTCTG TACACATGGG chr4:87109614-87109714 - 20 4.91e-05 ATGACAGCAA CAGCTCTG TACTTCAGGG chr13:112188151-11218825 + 80 4.91e-05 GCCCTCCTCT CAGCTCTG GCCTTATGCT chr2:5249841-5249941 + 34 4.91e-05 TCCGCTGGAT CAGCTCTG TGTCTCCCTC chr12:29760394-29760494 - 47 4.91e-05 AGTGTGGATT CAGCTCTG TCTCTGAGAA chr8:125538491-125538591 + 50 4.91e-05 CTGTCTCACA CTGCTCTG GTTTGAGGCT chr5:129300395-129300495 - 76 4.91e-05 CTTCCTGAGT CAGCTCTG GCTCCAGTGT chr11:9731640-9731740 - 29 4.91e-05 TTCCTTTCAA CTGCTCTG ACTCAACTCC chr2:55280839-55280939 + 16 4.91e-05 TGAGATTTTT CAGCTCTG CTAAATCATG chr2:92278599-92278699 + 53 7.36e-05 GCCACTCTGT GTGCTGTG CACAGTGTGC chr10:117094808-11709490 - 39 7.36e-05 TAATCACAGA GTGCTGTG TGGGCAGCAT chr9:70622755-70622855 + 3 7.36e-05 ct gtgctgtg ctgtgctgtg chr12:29083814-29083914 - 27 7.36e-05 CTGATGCAGT GTGCTGTG TCAAATCGCT chr17:29459483-29459583 + 54 7.36e-05 ATGAGGTCAG GAGCTGTG GGGACCAGCA chr5:88973842-88973942 + 63 7.36e-05 CAGAACCTGA GTGCTGTG ACTCTGACTT chr6:21591938-21592038 + 24 7.36e-05 GAATCACAGA GAGCTGTG TCAGCCTTTA chr15:25882104-25882204 - 50 7.36e-05 TAAGAGTTAG GAGCTGTG CCCTGAGCCC chr5:39315258-39315358 - 64 7.36e-05 AGGCTGCTCT GTGCTGTG GAACTTGAAT chr10:8111687-8111787 + 65 7.36e-05 TTTTTAGTCT GTGCTGTG CTTGTCACAC chr10:7274011-7274111 - 66 7.36e-05 AATACACGGT GTGCTGTG AGCTCTCACT chr14:78900811-78900911 - 79 7.36e-05 GCACTGTGCA GTGCTGTG TGATGCCTGT chr9:13543134-13543234 + 26 7.36e-05 tgtcgactgA GTGCTGTG TGCTTTCTAT chr10:20854883-20854983 - 42 7.36e-05 ACTGCATAAC GAGCTGTG GGATCAGAGG chr9:118003148-118003248 + 46 7.36e-05 CAGCCAGCCA GTGCTGTG CTGCTAAGTT chr2:104208343-104208443 - 25 7.36e-05 AGCATCCAGA GAGCTGTG TGAAGGGAAG chr18:38087186-38087286 - 41 1.03e-04 CTGCAGCCCA CATCTGTG GAAACCAGGC chr7:75008447-75008547 + 32 1.03e-04 CCTCCAGATC CTTCTGTG TGCTGGATGC chr2:68435724-68435824 - 9 1.03e-04 TGCTCGAGAA CATCTGTG AAGCAGGC chr2:146745724-146745824 + 5 1.03e-04 GAGC CTTCTGTG GTGGCCTTGC chr12:55273697-55273797 + 11 1.03e-04 GGCTTAGCAA CATCTGTG ATCAAGTAAC chr3:85465569-85465669 - 64 1.03e-04 CGGAAAGCAG CTTCTGTG AGCAAGGCTG chr10:126664606-12666470 - 62 1.03e-04 TGGCTCTGGG CATCTGTG CTATGGAACG chr10:111543489-11154358 - 52 1.03e-04 AGTGGGAAGG CATCTGTG ATTCAGAGAT chr13:47157410-47157510 + 58 1.03e-04 TCCACTTCCC CATCTGTG CCCAGCCATT chr15:62039517-62039617 + 19 1.03e-04 TCCTGTTTTG CTTCTGTG ACAGCAGTTT chr16:42032064-42032164 + 68 1.03e-04 TTTGGGTCTC CATCTGTG CCTCTGTTCT chr5:13551960-13552060 - 17 1.03e-04 TTCCTTTAGC CATCTGTG CAATGCTACA chr9:77486864-77486964 - 37 1.03e-04 GGAGGCCAGG CATCTGTG AGGGAAACCA chr16:6946160-6946260 - 12 1.03e-04 ACTGTATCTG CTTCTGTG CATGAAAGCG chr2:107973500-107973600 - 83 1.03e-04 CCGGATCTGA CTTCTGTG CAGGAGAGAC chr16:14237196-14237296 - 75 1.03e-04 TGCTGCTAAA CATCTGTG GATGTACTGG chr16:77644291-77644391 - 10 1.03e-04 ACTCAGAGCG CTTCTGTG TGCAAGGGG chr12:29187550-29187650 + 4 1.03e-04 CCT CTTCTGTG AGCTCCCAGC chr8:14474812-14474912 - 58 1.03e-04 TGAGCATCCA CTTCTGTG TGGGCAGACT chr12:56404801-56404901 - 39 1.03e-04 GGGCAGCACA CATCTGTG GCCTTGCACA chr15:81128088-81128188 - 57 1.13e-04 ATTAGATACT CGGCTGTG TATGGTAATT chr12:5322889-5322989 + 84 1.13e-04 GGGCTGGCTC CGGCTGTG GGGAACATG chr6:94224978-94225078 + 15 1.38e-04 CTCACTGAAG GTGCTCTG AGAGCCTAGC chr10:23214077-23214177 - 76 1.38e-04 CTCTATACCA GAGCTCTG TTCTGAGTGG chr17:59421754-59421854 + 29 1.38e-04 GACTTAAGAC GTGCTCTG GAGTATATCC chr4:138036866-138036966 - 73 1.38e-04 TGACACCGGA GAGCTCTG CAAGCGGGCA chrX:61505064-61505164 + 54 1.38e-04 ctagcaaatt gtgctctg tgctaacact chr10:49464495-49464595 - 43 1.38e-04 TAGATCCAAG GAGCTCTG GTTAGTTCAT chr12:82285956-82286056 + 32 1.38e-04 GGGTTTCCAT GTGCTCTG CACAGTACCG chr4:12511458-12511558 + 79 1.38e-04 CCTGGGAATG GTGCTCTG GGAGAGAGCA chr8:62678325-62678425 + 55 1.38e-04 GACATGCACT GTGCTCTG TCAGCTGAGG chr1:170741384-170741484 + 65 1.38e-04 GTCTATCAGG GAGCTCTG CTAGACTATG chr13:104013323-10401342 - 13 1.77e-04 TCAATATTGT CATCTCTG TATTCCAGGA chr2:145196071-145196171 - 64 1.77e-04 CATGTTCTCC CTTCTCTG AAGCTGTCCT chr7:55685158-55685258 - 70 1.77e-04 TCCCAGATTT CATCTCTG CATCATTGCA chr18:41717431-41717531 - 79 1.77e-04 GATATTTCAC CATCTCTG AGCATAATCA chr3:18625440-18625540 + 19 1.77e-04 AGAGAGCTGG CCGCTGTG GTTCCCCAGT chr9:32735876-32735976 - 4 1.77e-04 TTAGGTTCTG CTTCTCTG TTC chr9:97460402-97460502 + 43 1.77e-04 TGCAGACTTC CTTCTCTG CTGGCTTCTT chr10:53415249-53415349 + 41 1.77e-04 ctttacaatt catctctg ttcctactcc chr5:148760302-148760402 + 59 1.77e-04 GTGGGCATGG CTTCTCTG GAGCTTAGAC chr3:116315508-116315608 + 15 1.77e-04 CTCCTTTTAG CTTCTCTG ACCCCCGTCT chr2:127182672-127182772 + 26 1.77e-04 CGGAATTATT CCGCTGTG TCCCTTCAGC chr14:59532036-59532136 - 49 1.77e-04 TACTGATAAG CATCTCTG GCTGTCCTTC chr7:136871958-136872058 - 27 1.77e-04 GTTTAAGGAA CATCTCTG GGTCCTCATC chrX:73560546-73560646 - 34 1.77e-04 AATGTCCTGG CTTCTCTG AGGAAGGAGT chr10:85466758-85466858 + 72 2.38e-04 TGCTTCTCTT GTTCTGTG GCCTCAGTAC chr14:46967677-46967777 + 55 2.38e-04 GGACACAACT CTGCTGCG GAATGATGGA chr10:118399515-11839961 - 75 2.38e-04 GGATTCAAAG GTTCTGTG TTTGTATTTA chr2:136351683-136351783 - 38 2.38e-04 ATTCCAGTCA CTGCTGCG TTCACCAGCT chr13:21258999-21259099 + 47 2.38e-04 GAGATTTCGT GTTCTGTG GGTTTCATTG chr10:119564215-11956431 + 28 2.38e-04 ATTCGTGTCG CGGCTCTG TGCCACCAGC chr15:35727754-35727854 - 30 2.38e-04 GCCAAGGCTA GATCTGTG GGAGGACATG chr13:113269746-11326984 - 7 2.38e-04 AAGTAGAGCG CAGCTGCG TTCCTA chr8:79083349-79083449 - 6 2.38e-04 TGCCCCTCTG CTGCTGCG GAGGG chr12:105962609-10596270 - 69 2.38e-04 GCAGGCAGCT CAGCTGCG CAGCAGCCCA chr18:73932862-73932962 + 67 2.38e-04 TCCAGAGCCT GATCTGTG AGAGCCAGGA chr1:116147779-116147879 - 78 2.48e-04 ATAGGGAGAT GGGCTGTG CACAACACAG chr10:111759870-11175997 - 85 2.48e-04 TCAGGCGA GGGCTGTG TGAAAAAGCC chr6:82863459-82863559 - 54 2.48e-04 TGGCAGCAGA GGGCTGTG TTGGGCTCCT chr2:106355821-106355921 + 10 2.48e-04 AGGGTGACA GGGCTGTG CTTTCTATTT chr2:68148233-68148333 + 12 2.48e-04 CAGACATTCT GGGCTGTG CAGAAGCAAA chr19:56423609-56423709 + 53 2.48e-04 TCCCTTCCAA GGGCTGTG TGCTAAATCA chr9:122629082-122629182 - 34 2.60e-04 AGGCGCATTC CGTCTGTG ACTCATCCAG chrX:99216454-99216554 - 85 3.30e-04 CCAACGCG CAGCTCCG CAAGGGCCAT chr1:54126950-54127050 - 14 3.30e-04 TTCAAAGTCT GTTCTCTG TCAGAAGGTT chr6:105982178-105982278 - 70 3.30e-04 ACATGCTAGA GATCTCTG ATATATAGTA chr5:9055968-9056068 - 8 3.30e-04 GAAAGAGAGT CTGCTCCG TTTTTTT chr15:32418511-32418611 - 31 3.30e-04 AAAACCAGAA CAGCTCCG GCATGCTTCC chr2:117180438-117180538 - 53 3.30e-04 GGTGGCACTG CAGCTCCG CAAGCACTGC chr12:54404503-54404603 + 55 3.30e-04 AGCTCCTGCC CTGCTCCG GGCAAGCCTC chr9:40743496-40743596 + 70 3.30e-04 AAGCGAGAAA GCGCTGTG CTGGGCAGAA chr6:8627315-8627415 - 83 3.73e-04 CAATATATCA GTGCTGCG CCTGGCTTTG chr4:149798019-149798119 + 29 3.73e-04 AAGCACTGCA GGGCTCTG GCTCAGCCAG chr19:33102395-33102495 + 37 3.73e-04 TAATAGCATG CCTCTGTG CAGTCAAAGG chr6:138171712-138171812 + 51 3.73e-04 ACTAGATGTC CCTCTGTG GCTTTTCTTT chr8:107667918-107668018 + 48 3.73e-04 GGCGGATGCT CCTCTGTG GACCCGAGGA chr18:52935095-52935195 + 17 3.73e-04 CACTCAAACT CCTCTGTG TCAGATCTGA chr7:64583048-64583148 - 56 3.73e-04 ATGAGCCCCT CCTCTGTG CATACTCCTC chr2:30707958-30708058 + 52 3.73e-04 gcggccccgA GAGCTGCG CGAACCAggc chr13:30628371-30628471 - 29 3.73e-04 GCCTCCAGCT GGGCTCTG CCAGACAGAC chr17:70703197-70703297 + 12 3.73e-04 CCTATGACCA GGGCTCTG GATAGTGTAA chr19:26968113-26968213 + 16 3.73e-04 CTCAGAGCTA GAGCTGCG ACTCATAAGG chr19:55449053-55449153 - 29 3.73e-04 CAGTATCGCT GGGCTCTG ACTGAAGCTG chr3:69342237-69342337 - 30 3.73e-04 ATCCGCCATT CCTCTGTG TCCTCCCTCC chr1:21808984-21809084 + 35 3.73e-04 TGGCTTGTGG CCTCTGTG CTGACAGGTT chr3:103496102-103496202 + 48 4.10e-04 AGGTTTGAAA CATCTGCG GATTCATAGC chr5:57898992-57899092 + 36 4.10e-04 AGTAAGAGCC CATCTGCG GCTCCCTCAG chr3:107357125-107357225 - 27 4.10e-04 CAGAGTTTGG CATCTGCG GGTCTTTTCT chr6:67158707-67158807 + 78 4.10e-04 ATGTCTAAAT CGTCTCTG CCGGCAATAA chr9:45458911-45459011 + 70 4.10e-04 ATCCATAAGC CGTCTCTG CCATAGGGAG chr16:90503120-90503220 + 38 4.31e-04 gggaccttcc ggtctgtg catccccagc chr3:18670294-18670394 - 24 4.31e-04 GCATAATGCT CGGCTGCG GGATGTGTGA chr1:151087832-151087932 - 13 4.41e-04 CAAGAAGGGA GCGCTCTG TTCTGAGCTG chr14:60125179-60125279 - 40 4.41e-04 AACTGGGCCT GCGCTCTG CCTACTGGGA chr6:117574123-117574223 - 11 4.41e-04 CACACGACTG GCGCTCTG GTTGTTTACT chr5:149335779-149335879 + 54 4.74e-04 CCATCACACA GTGCTCCG GGGTTGGCAG chr10:87159693-87159793 + 48 4.74e-04 CTAGGTATAG GAGCTCCG GTTTCTTATT chr9:23249972-23250072 + 45 4.74e-04 TAAGGCCGGG GAGCTCCG TGCTGCCATC chr6:53022043-53022143 + 4 4.74e-04 AAT GTGCTCCG CAGTGGCAAC chr17:63303884-63303984 - 66 5.19e-04 CTTAGTCTCA CATCTCCG TCTTTGCTGA chr5:53366879-53366979 - 35 5.64e-04 GTTCTCCAAA GTTCTGCG GAGGAGATGG chr16:21333128-21333228 - 80 5.73e-04 GGAAGCGGAA GGGCTGCG AGCGGCACTG chr1:33932867-33932967 + 16 5.83e-04 CAGCAGCCAC CGTCTGCG GATACATCAC chr1:161170618-161170718 + 12 5.83e-04 GCGGAGCCTG CGTCTGCG CTCCACAAGC chr4:120023966-120024066 - 69 6.04e-04 AGGAGCAGAT CCGCTCCG AAGCCTCCAC chr6:92787211-92787311 - 28 6.57e-04 AACTCACACC CAGCGGTG CTTGGTACAA chr11:113167469-11316756 + 3 6.96e-04 CT GGTCTGCG CCCTGTAGGA chr3:37896931-37897031 + 6 6.96e-04 ATTCT GGTCTGCG TCAGGAGCCC chr1:142982908-142983008 - 14 8.09e-04 GAACATGTCT CGGCGGTG ACAGAAATAA chr18:8478111-8478211 + 14 8.72e-04 GTCTAAGCCA CCGCGGTG TATGTCTACA chr11:109331234-10933133 + 45 9.22e-04 AATCAGCTGG CAGCGCCG AGCTCACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWKCTSTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:58588993-58589093 2.5e-05 56_[+4]_36 chr13:25982146-25982246 2.5e-05 2_[+4]_90 chr8:84456815-84456915 2.5e-05 14_[+4]_78 chr10:41830833-41830933 2.5e-05 21_[+4]_71 chr18:87121234-87121334 2.5e-05 69_[+4]_23 chr9:29316787-29316887 2.5e-05 44_[-4]_48 chr17:64901414-64901514 2.5e-05 1_[+4]_91 chr18:26104223-26104323 2.5e-05 37_[-4]_55 chr17:8468671-8468771 2.5e-05 77_[-4]_15 chr2:30712000-30712100 2.5e-05 77_[-4]_15 chr10:74053021-74053121 2.5e-05 47_[+4]_45 chr3:129614033-129614133 2.5e-05 65_[+4]_27 chr9:103867760-103867860 2.5e-05 3_[+4]_89 chr14:105416903-10541700 2.5e-05 20_[-4]_72 chr9:42764782-42764882 2.5e-05 47_[-4]_45 chr6:67725515-67725615 2.5e-05 80_[+4]_12 chr3:137821863-137821963 2.5e-05 33_[+4]_59 chr1:97640406-97640506 2.5e-05 32_[-4]_60 chr6:33891898-33891998 2.5e-05 24_[+4]_68 chr11:88132096-88132196 2.5e-05 19_[+4]_73 chr9:20702034-20702134 2.5e-05 4_[+4]_88 chr13:28758934-28759034 2.5e-05 79_[+4]_13 chr8:8354914-8355014 2.5e-05 23_[-4]_69 chr8:52704001-52704101 2.5e-05 82_[-4]_10 chr13:52278733-52278833 2.5e-05 43_[+4]_49 chr12:7191834-7191934 2.5e-05 1_[+4]_91 chr3:55280946-55281046 4.9e-05 70_[-4]_22 chr15:41193181-41193281 4.9e-05 65_[-4]_27 chr15:31175843-31175943 4.9e-05 4_[+4]_88 chr19:24054787-24054887 4.9e-05 50_[+4]_42 chr6:18711170-18711270 4.9e-05 76_[-4]_16 chr19:47348487-47348587 4.9e-05 21_[-4]_71 chr15:38177331-38177431 4.9e-05 30_[-4]_62 chr2:168626220-168626320 4.9e-05 37_[-4]_55 chr17:30117861-30117961 4.9e-05 25_[+4]_67 chr19:58059546-58059646 4.9e-05 16_[+4]_76 chr18:23461056-23461156 4.9e-05 7_[+4]_85 chr4:87109614-87109714 4.9e-05 19_[-4]_73 chr13:112188151-11218825 4.9e-05 79_[+4]_13 chr2:5249841-5249941 4.9e-05 33_[+4]_59 chr12:29760394-29760494 4.9e-05 46_[-4]_46 chr8:125538491-125538591 4.9e-05 49_[+4]_43 chr5:129300395-129300495 4.9e-05 75_[-4]_17 chr11:9731640-9731740 4.9e-05 28_[-4]_64 chr2:55280839-55280939 4.9e-05 15_[+4]_77 chr2:92278599-92278699 7.4e-05 52_[+4]_40 chr10:117094808-11709490 7.4e-05 38_[-4]_54 chr9:70622755-70622855 7.4e-05 2_[+4]_90 chr12:29083814-29083914 7.4e-05 26_[-4]_66 chr17:29459483-29459583 7.4e-05 53_[+4]_39 chr5:88973842-88973942 7.4e-05 62_[+4]_30 chr6:21591938-21592038 7.4e-05 23_[+4]_69 chr15:25882104-25882204 7.4e-05 49_[-4]_43 chr5:39315258-39315358 7.4e-05 63_[-4]_29 chr10:8111687-8111787 7.4e-05 64_[+4]_28 chr10:7274011-7274111 7.4e-05 65_[-4]_27 chr14:78900811-78900911 7.4e-05 78_[-4]_14 chr9:13543134-13543234 7.4e-05 25_[+4]_67 chr10:20854883-20854983 7.4e-05 41_[-4]_51 chr9:118003148-118003248 7.4e-05 45_[+4]_47 chr2:104208343-104208443 7.4e-05 24_[-4]_68 chr18:38087186-38087286 0.0001 40_[-4]_52 chr7:75008447-75008547 0.0001 31_[+4]_61 chr2:68435724-68435824 0.0001 8_[-4]_84 chr2:146745724-146745824 0.0001 4_[+4]_88 chr12:55273697-55273797 0.0001 10_[+4]_82 chr3:85465569-85465669 0.0001 63_[-4]_29 chr10:126664606-12666470 0.0001 61_[-4]_31 chr10:111543489-11154358 0.0001 51_[-4]_41 chr13:47157410-47157510 0.0001 57_[+4]_35 chr15:62039517-62039617 0.0001 18_[+4]_74 chr16:42032064-42032164 0.0001 67_[+4]_25 chr5:13551960-13552060 0.0001 16_[-4]_76 chr9:77486864-77486964 0.0001 36_[-4]_56 chr16:6946160-6946260 0.0001 11_[-4]_81 chr2:107973500-107973600 0.0001 82_[-4]_10 chr16:14237196-14237296 0.0001 74_[-4]_18 chr16:77644291-77644391 0.0001 9_[-4]_83 chr12:29187550-29187650 0.0001 3_[+4]_89 chr8:14474812-14474912 0.0001 57_[-4]_35 chr12:56404801-56404901 0.0001 38_[-4]_54 chr15:81128088-81128188 0.00011 56_[-4]_36 chr12:5322889-5322989 0.00011 83_[+4]_9 chr6:94224978-94225078 0.00014 14_[+4]_78 chr10:23214077-23214177 0.00014 75_[-4]_17 chr17:59421754-59421854 0.00014 28_[+4]_64 chr4:138036866-138036966 0.00014 72_[-4]_20 chrX:61505064-61505164 0.00014 53_[+4]_39 chr10:49464495-49464595 0.00014 42_[-4]_50 chr12:82285956-82286056 0.00014 31_[+4]_61 chr4:12511458-12511558 0.00014 78_[+4]_14 chr8:62678325-62678425 0.00014 54_[+4]_38 chr1:170741384-170741484 0.00014 64_[+4]_28 chr13:104013323-10401342 0.00018 12_[-4]_80 chr2:145196071-145196171 0.00018 63_[-4]_29 chr7:55685158-55685258 0.00018 69_[-4]_23 chr18:41717431-41717531 0.00018 78_[-4]_14 chr3:18625440-18625540 0.00018 18_[+4]_74 chr9:32735876-32735976 0.00018 3_[-4]_89 chr9:97460402-97460502 0.00018 42_[+4]_50 chr10:53415249-53415349 0.00018 40_[+4]_52 chr5:148760302-148760402 0.00018 58_[+4]_34 chr3:116315508-116315608 0.00018 14_[+4]_78 chr2:127182672-127182772 0.00018 25_[+4]_67 chr14:59532036-59532136 0.00018 48_[-4]_44 chr7:136871958-136872058 0.00018 26_[-4]_66 chrX:73560546-73560646 0.00018 33_[-4]_59 chr10:85466758-85466858 0.00024 71_[+4]_21 chr14:46967677-46967777 0.00024 54_[+4]_38 chr10:118399515-11839961 0.00024 74_[-4]_18 chr2:136351683-136351783 0.00024 37_[-4]_55 chr13:21258999-21259099 0.00024 46_[+4]_46 chr10:119564215-11956431 0.00024 27_[+4]_65 chr15:35727754-35727854 0.00024 29_[-4]_63 chr13:113269746-11326984 0.00024 6_[-4]_86 chr8:79083349-79083449 0.00024 5_[-4]_87 chr12:105962609-10596270 0.00024 68_[-4]_24 chr18:73932862-73932962 0.00024 66_[+4]_26 chr1:116147779-116147879 0.00025 77_[-4]_15 chr10:111759870-11175997 0.00025 84_[-4]_8 chr6:82863459-82863559 0.00025 53_[-4]_39 chr2:106355821-106355921 0.00025 9_[+4]_83 chr2:68148233-68148333 0.00025 11_[+4]_81 chr19:56423609-56423709 0.00025 52_[+4]_40 chr9:122629082-122629182 0.00026 33_[-4]_59 chrX:99216454-99216554 0.00033 84_[-4]_8 chr1:54126950-54127050 0.00033 13_[-4]_79 chr6:105982178-105982278 0.00033 69_[-4]_23 chr5:9055968-9056068 0.00033 7_[-4]_85 chr15:32418511-32418611 0.00033 30_[-4]_62 chr2:117180438-117180538 0.00033 52_[-4]_40 chr12:54404503-54404603 0.00033 54_[+4]_38 chr9:40743496-40743596 0.00033 69_[+4]_23 chr6:8627315-8627415 0.00037 82_[-4]_10 chr4:149798019-149798119 0.00037 28_[+4]_64 chr19:33102395-33102495 0.00037 36_[+4]_56 chr6:138171712-138171812 0.00037 50_[+4]_42 chr8:107667918-107668018 0.00037 47_[+4]_45 chr18:52935095-52935195 0.00037 16_[+4]_76 chr7:64583048-64583148 0.00037 55_[-4]_37 chr2:30707958-30708058 0.00037 51_[+4]_41 chr13:30628371-30628471 0.00037 28_[-4]_64 chr17:70703197-70703297 0.00037 11_[+4]_81 chr19:26968113-26968213 0.00037 15_[+4]_77 chr19:55449053-55449153 0.00037 28_[-4]_64 chr3:69342237-69342337 0.00037 29_[-4]_63 chr1:21808984-21809084 0.00037 34_[+4]_58 chr3:103496102-103496202 0.00041 47_[+4]_45 chr5:57898992-57899092 0.00041 35_[+4]_57 chr3:107357125-107357225 0.00041 26_[-4]_66 chr6:67158707-67158807 0.00041 77_[+4]_15 chr9:45458911-45459011 0.00041 69_[+4]_23 chr16:90503120-90503220 0.00043 37_[+4]_55 chr3:18670294-18670394 0.00043 23_[-4]_69 chr1:151087832-151087932 0.00044 12_[-4]_80 chr14:60125179-60125279 0.00044 39_[-4]_53 chr6:117574123-117574223 0.00044 10_[-4]_82 chr5:149335779-149335879 0.00047 53_[+4]_39 chr10:87159693-87159793 0.00047 47_[+4]_45 chr9:23249972-23250072 0.00047 44_[+4]_48 chr6:53022043-53022143 0.00047 3_[+4]_89 chr17:63303884-63303984 0.00052 65_[-4]_27 chr5:53366879-53366979 0.00056 34_[-4]_58 chr16:21333128-21333228 0.00057 79_[-4]_13 chr1:33932867-33932967 0.00058 15_[+4]_77 chr1:161170618-161170718 0.00058 11_[+4]_81 chr4:120023966-120024066 0.0006 68_[-4]_24 chr6:92787211-92787311 0.00066 27_[-4]_65 chr11:113167469-11316756 0.0007 2_[+4]_90 chr3:37896931-37897031 0.0007 5_[+4]_87 chr1:142982908-142983008 0.00081 13_[-4]_79 chr18:8478111-8478211 0.00087 13_[+4]_79 chr11:109331234-10933133 0.00092 44_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWKCTSTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SWKCTSTG width=8 seqs=173 chr15:58588993-58589093 ( 57) CAGCTGTG 1 chr13:25982146-25982246 ( 3) CTGCTGTG 1 chr8:84456815-84456915 ( 15) CAGCTGTG 1 chr10:41830833-41830933 ( 22) CTGCTGTG 1 chr18:87121234-87121334 ( 70) CAGCTGTG 1 chr9:29316787-29316887 ( 45) CAGCTGTG 1 chr17:64901414-64901514 ( 2) CAGCTGTG 1 chr18:26104223-26104323 ( 38) CTGCTGTG 1 chr17:8468671-8468771 ( 78) CTGCTGTG 1 chr2:30712000-30712100 ( 78) CAGCTGTG 1 chr10:74053021-74053121 ( 48) CTGCTGTG 1 chr3:129614033-129614133 ( 66) CTGCTGTG 1 chr9:103867760-103867860 ( 4) CAGCTGTG 1 chr14:105416903-10541700 ( 21) CAGCTGTG 1 chr9:42764782-42764882 ( 48) CAGCTGTG 1 chr6:67725515-67725615 ( 81) CAGCTGTG 1 chr3:137821863-137821963 ( 34) CAGCTGTG 1 chr1:97640406-97640506 ( 33) CAGCTGTG 1 chr6:33891898-33891998 ( 25) CAGCTGTG 1 chr11:88132096-88132196 ( 20) CAGCTGTG 1 chr9:20702034-20702134 ( 5) CAGCTGTG 1 chr13:28758934-28759034 ( 80) CAGCTGTG 1 chr8:8354914-8355014 ( 24) CAGCTGTG 1 chr8:52704001-52704101 ( 83) CAGCTGTG 1 chr13:52278733-52278833 ( 44) CAGCTGTG 1 chr12:7191834-7191934 ( 2) CTGCTGTG 1 chr3:55280946-55281046 ( 71) CTGCTCTG 1 chr15:41193181-41193281 ( 66) CTGCTCTG 1 chr15:31175843-31175943 ( 5) CTGCTCTG 1 chr19:24054787-24054887 ( 51) CTGCTCTG 1 chr6:18711170-18711270 ( 77) CTGCTCTG 1 chr19:47348487-47348587 ( 22) CTGCTCTG 1 chr15:38177331-38177431 ( 31) CTGCTCTG 1 chr2:168626220-168626320 ( 38) CTGCTCTG 1 chr17:30117861-30117961 ( 26) CAGCTCTG 1 chr19:58059546-58059646 ( 17) CTGCTCTG 1 chr18:23461056-23461156 ( 8) CTGCTCTG 1 chr4:87109614-87109714 ( 20) CAGCTCTG 1 chr13:112188151-11218825 ( 80) CAGCTCTG 1 chr2:5249841-5249941 ( 34) CAGCTCTG 1 chr12:29760394-29760494 ( 47) CAGCTCTG 1 chr8:125538491-125538591 ( 50) CTGCTCTG 1 chr5:129300395-129300495 ( 76) CAGCTCTG 1 chr11:9731640-9731740 ( 29) CTGCTCTG 1 chr2:55280839-55280939 ( 16) CAGCTCTG 1 chr2:92278599-92278699 ( 53) GTGCTGTG 1 chr10:117094808-11709490 ( 39) GTGCTGTG 1 chr9:70622755-70622855 ( 3) GTGCTGTG 1 chr12:29083814-29083914 ( 27) GTGCTGTG 1 chr17:29459483-29459583 ( 54) GAGCTGTG 1 chr5:88973842-88973942 ( 63) GTGCTGTG 1 chr6:21591938-21592038 ( 24) GAGCTGTG 1 chr15:25882104-25882204 ( 50) GAGCTGTG 1 chr5:39315258-39315358 ( 64) GTGCTGTG 1 chr10:8111687-8111787 ( 65) GTGCTGTG 1 chr10:7274011-7274111 ( 66) GTGCTGTG 1 chr14:78900811-78900911 ( 79) GTGCTGTG 1 chr9:13543134-13543234 ( 26) GTGCTGTG 1 chr10:20854883-20854983 ( 42) GAGCTGTG 1 chr9:118003148-118003248 ( 46) GTGCTGTG 1 chr2:104208343-104208443 ( 25) GAGCTGTG 1 chr18:38087186-38087286 ( 41) CATCTGTG 1 chr7:75008447-75008547 ( 32) CTTCTGTG 1 chr2:68435724-68435824 ( 9) CATCTGTG 1 chr2:146745724-146745824 ( 5) CTTCTGTG 1 chr12:55273697-55273797 ( 11) CATCTGTG 1 chr3:85465569-85465669 ( 64) CTTCTGTG 1 chr10:126664606-12666470 ( 62) CATCTGTG 1 chr10:111543489-11154358 ( 52) CATCTGTG 1 chr13:47157410-47157510 ( 58) CATCTGTG 1 chr15:62039517-62039617 ( 19) CTTCTGTG 1 chr16:42032064-42032164 ( 68) CATCTGTG 1 chr5:13551960-13552060 ( 17) CATCTGTG 1 chr9:77486864-77486964 ( 37) CATCTGTG 1 chr16:6946160-6946260 ( 12) CTTCTGTG 1 chr2:107973500-107973600 ( 83) CTTCTGTG 1 chr16:14237196-14237296 ( 75) CATCTGTG 1 chr16:77644291-77644391 ( 10) CTTCTGTG 1 chr12:29187550-29187650 ( 4) CTTCTGTG 1 chr8:14474812-14474912 ( 58) CTTCTGTG 1 chr12:56404801-56404901 ( 39) CATCTGTG 1 chr15:81128088-81128188 ( 57) CGGCTGTG 1 chr12:5322889-5322989 ( 84) CGGCTGTG 1 chr6:94224978-94225078 ( 15) GTGCTCTG 1 chr10:23214077-23214177 ( 76) GAGCTCTG 1 chr17:59421754-59421854 ( 29) GTGCTCTG 1 chr4:138036866-138036966 ( 73) GAGCTCTG 1 chrX:61505064-61505164 ( 54) GTGCTCTG 1 chr10:49464495-49464595 ( 43) GAGCTCTG 1 chr12:82285956-82286056 ( 32) GTGCTCTG 1 chr4:12511458-12511558 ( 79) GTGCTCTG 1 chr8:62678325-62678425 ( 55) GTGCTCTG 1 chr1:170741384-170741484 ( 65) GAGCTCTG 1 chr13:104013323-10401342 ( 13) CATCTCTG 1 chr2:145196071-145196171 ( 64) CTTCTCTG 1 chr7:55685158-55685258 ( 70) CATCTCTG 1 chr18:41717431-41717531 ( 79) CATCTCTG 1 chr3:18625440-18625540 ( 19) CCGCTGTG 1 chr9:32735876-32735976 ( 4) CTTCTCTG 1 chr9:97460402-97460502 ( 43) CTTCTCTG 1 chr10:53415249-53415349 ( 41) CATCTCTG 1 chr5:148760302-148760402 ( 59) CTTCTCTG 1 chr3:116315508-116315608 ( 15) CTTCTCTG 1 chr2:127182672-127182772 ( 26) CCGCTGTG 1 chr14:59532036-59532136 ( 49) CATCTCTG 1 chr7:136871958-136872058 ( 27) CATCTCTG 1 chrX:73560546-73560646 ( 34) CTTCTCTG 1 chr10:85466758-85466858 ( 72) GTTCTGTG 1 chr14:46967677-46967777 ( 55) CTGCTGCG 1 chr10:118399515-11839961 ( 75) GTTCTGTG 1 chr2:136351683-136351783 ( 38) CTGCTGCG 1 chr13:21258999-21259099 ( 47) GTTCTGTG 1 chr10:119564215-11956431 ( 28) CGGCTCTG 1 chr15:35727754-35727854 ( 30) GATCTGTG 1 chr13:113269746-11326984 ( 7) CAGCTGCG 1 chr8:79083349-79083449 ( 6) CTGCTGCG 1 chr12:105962609-10596270 ( 69) CAGCTGCG 1 chr18:73932862-73932962 ( 67) GATCTGTG 1 chr1:116147779-116147879 ( 78) GGGCTGTG 1 chr10:111759870-11175997 ( 85) GGGCTGTG 1 chr6:82863459-82863559 ( 54) GGGCTGTG 1 chr2:106355821-106355921 ( 10) GGGCTGTG 1 chr2:68148233-68148333 ( 12) GGGCTGTG 1 chr19:56423609-56423709 ( 53) GGGCTGTG 1 chr9:122629082-122629182 ( 34) CGTCTGTG 1 chrX:99216454-99216554 ( 85) CAGCTCCG 1 chr1:54126950-54127050 ( 14) GTTCTCTG 1 chr6:105982178-105982278 ( 70) GATCTCTG 1 chr5:9055968-9056068 ( 8) CTGCTCCG 1 chr15:32418511-32418611 ( 31) CAGCTCCG 1 chr2:117180438-117180538 ( 53) CAGCTCCG 1 chr12:54404503-54404603 ( 55) CTGCTCCG 1 chr9:40743496-40743596 ( 70) GCGCTGTG 1 chr6:8627315-8627415 ( 83) GTGCTGCG 1 chr4:149798019-149798119 ( 29) GGGCTCTG 1 chr19:33102395-33102495 ( 37) CCTCTGTG 1 chr6:138171712-138171812 ( 51) CCTCTGTG 1 chr8:107667918-107668018 ( 48) CCTCTGTG 1 chr18:52935095-52935195 ( 17) CCTCTGTG 1 chr7:64583048-64583148 ( 56) CCTCTGTG 1 chr2:30707958-30708058 ( 52) GAGCTGCG 1 chr13:30628371-30628471 ( 29) GGGCTCTG 1 chr17:70703197-70703297 ( 12) GGGCTCTG 1 chr19:26968113-26968213 ( 16) GAGCTGCG 1 chr19:55449053-55449153 ( 29) GGGCTCTG 1 chr3:69342237-69342337 ( 30) CCTCTGTG 1 chr1:21808984-21809084 ( 35) CCTCTGTG 1 chr3:103496102-103496202 ( 48) CATCTGCG 1 chr5:57898992-57899092 ( 36) CATCTGCG 1 chr3:107357125-107357225 ( 27) CATCTGCG 1 chr6:67158707-67158807 ( 78) CGTCTCTG 1 chr9:45458911-45459011 ( 70) CGTCTCTG 1 chr16:90503120-90503220 ( 38) GGTCTGTG 1 chr3:18670294-18670394 ( 24) CGGCTGCG 1 chr1:151087832-151087932 ( 13) GCGCTCTG 1 chr14:60125179-60125279 ( 40) GCGCTCTG 1 chr6:117574123-117574223 ( 11) GCGCTCTG 1 chr5:149335779-149335879 ( 54) GTGCTCCG 1 chr10:87159693-87159793 ( 48) GAGCTCCG 1 chr9:23249972-23250072 ( 45) GAGCTCCG 1 chr6:53022043-53022143 ( 4) GTGCTCCG 1 chr17:63303884-63303984 ( 66) CATCTCCG 1 chr5:53366879-53366979 ( 35) GTTCTGCG 1 chr16:21333128-21333228 ( 80) GGGCTGCG 1 chr1:33932867-33932967 ( 16) CGTCTGCG 1 chr1:161170618-161170718 ( 12) CGTCTGCG 1 chr4:120023966-120024066 ( 69) CCGCTCCG 1 chr6:92787211-92787311 ( 28) CAGCGGTG 1 chr11:113167469-11316756 ( 3) GGTCTGCG 1 chr3:37896931-37897031 ( 6) GGTCTGCG 1 chr1:142982908-142983008 ( 14) CGGCGGTG 1 chr18:8478111-8478211 ( 14) CCGCGGTG 1 chr11:109331234-10933133 ( 45) CAGCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWKCTSTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.1999 E= 1.4e+002 -1408 154 59 -1408 57 -139 -71 44 -1408 -1408 154 32 -1408 214 -1408 -1408 -1408 -1408 -329 184 -1408 73 146 -1408 -1408 -39 -1408 160 -1408 -1408 214 -1408 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWKCTSTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 173 E= 1.4e+002 0.000000 0.658960 0.341040 0.000000 0.404624 0.086705 0.138728 0.369942 0.000000 0.000000 0.658960 0.341040 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.023121 0.976879 0.000000 0.375723 0.624277 0.000000 0.000000 0.173410 0.000000 0.826590 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SWKCTSTG MEME-4 regular expression -------------------------------------------------------------------------------- [CG][AT][GT]CT[GC]TG -------------------------------------------------------------------------------- Time 1936.31 secs. ******************************************************************************** ******************************************************************************** MOTIF SAGSMAGC MEME-5 width = 8 sites = 95 llr = 811 E-value = 1.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGSMAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :9::59:: pos.-specific C 61:551:a probability G 4:a5::a: matrix T :::::::: bits 2.1 * ** 1.9 * ** 1.7 * ** 1.5 * ** Relative 1.3 ** *** Entropy 1.1 ******** (12.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCAGC consensus G GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSMAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr2:169849035-169849135 - 78 1.02e-05 CCCAGCGTGC CAGCCAGC AGTGCATCCA chr15:59032101-59032201 + 36 1.02e-05 CCCTGGGCGG CAGCCAGC ACAGTGCCAT chr16:90503120-90503220 - 5 1.02e-05 TCGTAAAAAA CAGCCAGC CCAG chr8:89770442-89770542 + 20 1.02e-05 AGACCCCCCT CAGCCAGC ACTTCTCTCT chr10:8111687-8111787 + 11 1.02e-05 ATATGTGTCA CAGCCAGC CAAAATAACC chr13:73032963-73033063 + 19 1.02e-05 CTTCCCAGTG CAGCCAGC CAGTGACCAG chr9:118003148-118003248 + 36 1.02e-05 TGATGAAATC CAGCCAGC CAGTGCTGTG chr11:37140398-37140498 - 60 1.02e-05 ACATTTTCAT CAGCCAGC CCACAGAGCT chr10:118569227-11856932 + 57 1.02e-05 GAGAATCTGG CAGCCAGC TGAATCCCTG chr17:75087276-75087376 + 24 2.04e-05 CCAAGAAGAG CAGGCAGC CTCTAAAAGC chr9:29316787-29316887 - 63 2.04e-05 AGCAAAATCC CAGGCAGC TTGGCGAGTT chr5:19546408-19546508 - 44 2.04e-05 CCTTCTGAAC CAGGCAGC AGGTCTGCAG chr1:188093550-188093650 + 77 2.04e-05 ACATTATGGG CAGGCAGC TGGGCACAGA chr12:80213698-80213798 + 38 2.04e-05 CGGGGCAGAA CAGGCAGC TGGTGAGAGA chr6:32327110-32327210 + 22 2.04e-05 GGGTAGGAGC CAGGCAGC TGAGTTTGCA chr15:82938152-82938252 + 65 2.04e-05 GCTCAAATCC CAGGCAGC AATGCCTCCC chr2:178263843-178263943 + 80 2.04e-05 CCAAGTGTCT CAGGCAGC AAGGACAAGA chr3:80891034-80891134 - 39 2.04e-05 TGCTTTGACT CAGGCAGC CTGCACTTTT chr9:20702034-20702134 + 70 2.04e-05 CTCAGCTCCA CAGGCAGC AGGTGACTGA chr2:106355821-106355921 - 84 2.04e-05 TCCTGAGCA CAGGCAGC TTCCCACGCC chr12:105962609-10596270 - 78 2.04e-05 CAAGGGATTG CAGGCAGC TCAGCTGCGC chr8:14474812-14474912 - 23 2.04e-05 TGATGCAGCC CAGGCAGC AGTTCTGCTG chr1:164218566-164218666 - 18 3.27e-05 GGGCTCCTGT CAGCAAGC TCTAATTGGC chr17:26892685-26892785 - 2 3.27e-05 TAGGCAGAAC CAGCAAGC C chr15:41492073-41492173 - 79 3.27e-05 TAGGAATTCT CAGCAAGC ACTCTGATGT chr5:52087029-52087129 - 15 3.27e-05 TGGCCTGCAC CAGCAAGC TGCACTCTCT chr8:10448504-10448604 + 66 3.27e-05 TCTGCATTTC CAGCAAGC GCAAGTGACA chr3:27009515-27009615 + 8 3.27e-05 gcagctc cagcaagc agcagaacct chr1:176239483-176239583 + 32 3.27e-05 GAgcaggctc cagcaagc aatcctcgtt chr13:80709584-80709684 - 39 3.27e-05 CAGGGCAAAG CAGCAAGC CAGTCAGCTA chr17:8626254-8626354 - 84 3.27e-05 AGCAGGCTC CAGCAAGC CAGCACTTAA chr9:62488584-62488684 + 30 3.27e-05 GCAAAACGGA CAGCAAGC ACTTTGCCTG chr9:23249972-23250072 + 82 3.27e-05 GTGTCAGACT CAGCAAGC TGGCTGCTGT chr10:83062270-83062370 + 70 3.27e-05 ATGGTGCTGG CAGCAAGC CTGTCCTTCA chr6:8627315-8627415 + 25 4.49e-05 CTAATTAGAG CAGGAAGC AGAGGATTAA chr12:29083814-29083914 + 12 4.49e-05 agtcaggaaa caggaagc gaTTTGACAC chr2:145196071-145196171 - 10 4.49e-05 AGAAAAGGCA CAGGAAGC AAACGTTCA chr14:30248145-30248245 + 38 4.49e-05 AGCAGGCTTT CAGGAAGC AATGACGAGC chr3:145705301-145705401 + 63 4.49e-05 GTGAGCTCAC CAGGAAGC TCATTCCCTA chr16:92954393-92954493 + 25 4.49e-05 GTTCAAGTTC CAGGAAGC AAAGCTGTGA chr6:67158707-67158807 + 17 4.49e-05 CTTGGTCTAG CAGGAAGC TCTCCTTCAT chr8:126334951-126335051 - 30 4.49e-05 TTAAAAGGTC CAGGAAGC CCAAGAATAG chr15:27769050-27769150 + 82 4.49e-05 TGGGTGACAA CAGGAAGC CAAGATTGGG chr15:27783525-27783625 + 81 4.49e-05 CAAGCAGCCA CAGGAAGC AATCAAGCAG chr11:117610568-11761066 - 15 4.49e-05 CATCCTCAGT CAGGAAGC AGAGAGATGG chr13:110151730-11015183 - 61 5.51e-05 TTTCCAGAGA GAGCCAGC ATTCGCGGTG chr9:89973846-89973946 + 52 5.51e-05 CTTTCTCTCT GAGCCAGC ATAATTGGCA chr19:20836037-20836137 - 1 5.51e-05 TGCTGTAGAC GAGCCAGC chr15:12700308-12700408 + 31 5.51e-05 TTTCAAGGTC GAGCCAGC ATTGCTTCCA chr6:135951582-135951682 + 80 5.51e-05 TCAGCAGTGG GAGCCAGC ACAGCAGTGA chr2:10831241-10831341 + 60 5.51e-05 TGCCGGTTAT GAGCCAGC AGGGACAGTG chr12:5322889-5322989 - 76 5.51e-05 CCCACAGCCG GAGCCAGC CCAGCTCCAG chr16:6946160-6946260 + 32 5.51e-05 GATACAGTCA GAGCCAGC CAAGGAGAAC chr13:114009789-11400988 - 44 5.51e-05 AGAGTTTTAG GAGCCAGC ATTAGTGAGA chr13:52278733-52278833 + 14 5.51e-05 AATTCTTCCA GAGCCAGC CACACCATGT chr14:59838408-59838508 - 4 5.51e-05 AATCCCTGCT GAGCCAGC AGC chr4:104455404-104455504 + 56 6.53e-05 TGTCATGGAA GAGGCAGC CAATTGCTCT chr13:91915324-91915424 - 45 6.53e-05 TTCCACTTGT GAGGCAGC CTCAGTGTAG chr2:42470285-42470385 + 51 6.53e-05 TGCATTAGAG GAGGCAGC TGGGTAGCAC chr2:168626220-168626320 - 7 6.53e-05 GGTGGAAGGA GAGGCAGC CAAAGG chr13:30628371-30628471 + 42 6.53e-05 AGCCCAGCTG GAGGCAGC ACCATGAGTT chr15:58588993-58589093 + 37 7.76e-05 GAAACCATCA GAGCAAGC TACAAAGGCA chr5:149335779-149335879 - 20 7.76e-05 ACCCTTTAAT GAGCAAGC TGCTCCCTAA chr6:92787211-92787311 + 5 7.76e-05 CGAA GAGCAAGC ACACTTTGTA chr16:21333128-21333228 - 45 7.76e-05 CATCTTGGCC GAGCAAGC CGGAAGTGGC chr10:105489665-10548976 + 1 7.76e-05 . GAGCAAGC GGAAGAAATG chr8:33468443-33468543 + 6 7.76e-05 ACAGT GAGCAAGC AAGGCACCCC chr18:56756251-56756351 - 23 8.98e-05 CAGACGGGTG GAGGAAGC CCTCGCATAT chr1:24304591-24304691 - 68 8.98e-05 GAGGCACTGA GAGGAAGC AGTGTGCTAG chr3:138686705-138686805 - 7 8.98e-05 GCATCCCTCG GAGGAAGC CACTCT chr18:82592337-82592437 + 34 8.98e-05 GGATGGCGTG GAGGAAGC CAGTCATCAG chr15:36429833-36429933 - 81 8.98e-05 CAGGGAGCGA GAGGAAGC AAGATGTAGA chr8:52704001-52704101 - 63 8.98e-05 CCCTAAGATT GAGGAAGC TGACTCAGCA chr7:115388923-115389023 + 67 8.98e-05 ATTTCACGTG GAGGAAGC CCAAGGTCTC chr8:8354914-8355014 + 82 9.83e-05 TGTGTCTTAC CCGCCAGC ACACGGGCTG chr6:28591771-28591871 + 78 1.07e-04 ATGGGTCAGG CCGGCAGC CTTCCTCTGA chr3:85465569-85465669 + 79 1.17e-04 AAGCTGCTTT CCGCAAGC AGCAGCCCGC chr9:67632439-67632539 + 6 1.17e-04 GCACC CCGCAAGC CCCGGTGCTG chr12:44857989-44858089 - 23 1.36e-04 CAGGCTTTGA CAGCCCGC CATGGGTGGT chr8:12126152-12126252 + 16 1.36e-04 CCATGCCAAC CAGCCCGC TCTCTAAGGA chr6:82863459-82863559 - 85 1.36e-04 CAGGCAGG CAGCCCGC CTGTGCCAGG chr18:8478111-8478211 - 49 1.36e-04 CCGGACCAGA CCGGAAGC AACACAGACC chr6:131433520-131433620 + 15 1.53e-04 GCCACTAGCA CAGGCCGC CCAGGGCTGC chr19:51142493-51142593 + 12 1.53e-04 aagagcgaga gcgccagc tatcctgagg chrX:99216454-99216554 + 11 1.92e-04 TCTGCCTCAG GCGCAAGC CCTTCTGCCA chr17:8468671-8468771 - 54 1.92e-04 GCCTCATCCA CAGGACGC GGGCCTGCAG chr9:43945126-43945226 + 69 2.10e-04 aagatagaaa gcggaagc ttgactctcc chr10:67377869-67377969 - 25 2.10e-04 GGAGGCCCCT GCGGAAGC CCTGGTCTAA chr14:34777770-34777870 + 28 2.29e-04 TCTCAGCAAA GAGCACGC ATCTCCCTCG chr13:47319552-47319652 - 3 2.39e-04 CCAACAAAAG GAGGACGC TG chr10:93681204-93681304 + 26 2.46e-04 TAAAATCAAC CCGCCCGC AAAGGCAGCG chr2:30707958-30708058 + 81 2.84e-04 ggccccgggc gcggccgc ccccgccgAG chr16:94720946-94721046 - 11 2.93e-04 GGCAGTGGTG GCGCACGC CTGTAATCCC chr10:74053021-74053121 - 23 4.55e-04 CTTCCTTCAC ACGCCAGC GCAGCCTTGG chr2:45776297-45776397 - 53 5.60e-04 GACGGATGGG CCGGATGC GTGATTCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSMAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:169849035-169849135 1e-05 77_[-5]_15 chr15:59032101-59032201 1e-05 35_[+5]_57 chr16:90503120-90503220 1e-05 4_[-5]_88 chr8:89770442-89770542 1e-05 19_[+5]_73 chr10:8111687-8111787 1e-05 10_[+5]_82 chr13:73032963-73033063 1e-05 18_[+5]_74 chr9:118003148-118003248 1e-05 35_[+5]_57 chr11:37140398-37140498 1e-05 59_[-5]_33 chr10:118569227-11856932 1e-05 56_[+5]_36 chr17:75087276-75087376 2e-05 23_[+5]_69 chr9:29316787-29316887 2e-05 62_[-5]_30 chr5:19546408-19546508 2e-05 43_[-5]_49 chr1:188093550-188093650 2e-05 76_[+5]_16 chr12:80213698-80213798 2e-05 37_[+5]_55 chr6:32327110-32327210 2e-05 21_[+5]_71 chr15:82938152-82938252 2e-05 64_[+5]_28 chr2:178263843-178263943 2e-05 79_[+5]_13 chr3:80891034-80891134 2e-05 38_[-5]_54 chr9:20702034-20702134 2e-05 69_[+5]_23 chr2:106355821-106355921 2e-05 83_[-5]_9 chr12:105962609-10596270 2e-05 77_[-5]_15 chr8:14474812-14474912 2e-05 22_[-5]_70 chr1:164218566-164218666 3.3e-05 17_[-5]_75 chr17:26892685-26892785 3.3e-05 1_[-5]_91 chr15:41492073-41492173 3.3e-05 78_[-5]_14 chr5:52087029-52087129 3.3e-05 14_[-5]_78 chr8:10448504-10448604 3.3e-05 65_[+5]_27 chr3:27009515-27009615 3.3e-05 7_[+5]_85 chr1:176239483-176239583 3.3e-05 31_[+5]_61 chr13:80709584-80709684 3.3e-05 38_[-5]_54 chr17:8626254-8626354 3.3e-05 83_[-5]_9 chr9:62488584-62488684 3.3e-05 29_[+5]_63 chr9:23249972-23250072 3.3e-05 81_[+5]_11 chr10:83062270-83062370 3.3e-05 69_[+5]_23 chr6:8627315-8627415 4.5e-05 24_[+5]_68 chr12:29083814-29083914 4.5e-05 11_[+5]_81 chr2:145196071-145196171 4.5e-05 9_[-5]_83 chr14:30248145-30248245 4.5e-05 37_[+5]_55 chr3:145705301-145705401 4.5e-05 62_[+5]_30 chr16:92954393-92954493 4.5e-05 24_[+5]_68 chr6:67158707-67158807 4.5e-05 16_[+5]_76 chr8:126334951-126335051 4.5e-05 29_[-5]_63 chr15:27769050-27769150 4.5e-05 81_[+5]_11 chr15:27783525-27783625 4.5e-05 80_[+5]_12 chr11:117610568-11761066 4.5e-05 14_[-5]_78 chr13:110151730-11015183 5.5e-05 60_[-5]_32 chr9:89973846-89973946 5.5e-05 51_[+5]_41 chr19:20836037-20836137 5.5e-05 [-5]_92 chr15:12700308-12700408 5.5e-05 30_[+5]_62 chr6:135951582-135951682 5.5e-05 79_[+5]_13 chr2:10831241-10831341 5.5e-05 59_[+5]_33 chr12:5322889-5322989 5.5e-05 75_[-5]_17 chr16:6946160-6946260 5.5e-05 31_[+5]_61 chr13:114009789-11400988 5.5e-05 43_[-5]_49 chr13:52278733-52278833 5.5e-05 13_[+5]_79 chr14:59838408-59838508 5.5e-05 3_[-5]_89 chr4:104455404-104455504 6.5e-05 55_[+5]_37 chr13:91915324-91915424 6.5e-05 44_[-5]_48 chr2:42470285-42470385 6.5e-05 50_[+5]_42 chr2:168626220-168626320 6.5e-05 6_[-5]_86 chr13:30628371-30628471 6.5e-05 41_[+5]_51 chr15:58588993-58589093 7.8e-05 36_[+5]_56 chr5:149335779-149335879 7.8e-05 19_[-5]_73 chr6:92787211-92787311 7.8e-05 4_[+5]_88 chr16:21333128-21333228 7.8e-05 44_[-5]_48 chr10:105489665-10548976 7.8e-05 [+5]_92 chr8:33468443-33468543 7.8e-05 5_[+5]_87 chr18:56756251-56756351 9e-05 22_[-5]_70 chr1:24304591-24304691 9e-05 67_[-5]_25 chr3:138686705-138686805 9e-05 6_[-5]_86 chr18:82592337-82592437 9e-05 33_[+5]_59 chr15:36429833-36429933 9e-05 80_[-5]_12 chr8:52704001-52704101 9e-05 62_[-5]_30 chr7:115388923-115389023 9e-05 66_[+5]_26 chr8:8354914-8355014 9.8e-05 81_[+5]_11 chr6:28591771-28591871 0.00011 77_[+5]_15 chr3:85465569-85465669 0.00012 78_[+5]_14 chr9:67632439-67632539 0.00012 5_[+5]_87 chr12:44857989-44858089 0.00014 22_[-5]_70 chr8:12126152-12126252 0.00014 15_[+5]_77 chr6:82863459-82863559 0.00014 84_[-5]_8 chr18:8478111-8478211 0.00014 48_[-5]_44 chr6:131433520-131433620 0.00015 14_[+5]_78 chr19:51142493-51142593 0.00015 11_[+5]_81 chrX:99216454-99216554 0.00019 10_[+5]_82 chr17:8468671-8468771 0.00019 53_[-5]_39 chr9:43945126-43945226 0.00021 68_[+5]_24 chr10:67377869-67377969 0.00021 24_[-5]_68 chr14:34777770-34777870 0.00023 27_[+5]_65 chr13:47319552-47319652 0.00024 2_[-5]_90 chr10:93681204-93681304 0.00025 25_[+5]_67 chr2:30707958-30708058 0.00028 80_[+5]_12 chr16:94720946-94721046 0.00029 10_[-5]_82 chr10:74053021-74053121 0.00046 22_[-5]_70 chr2:45776297-45776397 0.00056 52_[-5]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSMAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGSMAGC width=8 seqs=95 chr2:169849035-169849135 ( 78) CAGCCAGC 1 chr15:59032101-59032201 ( 36) CAGCCAGC 1 chr16:90503120-90503220 ( 5) CAGCCAGC 1 chr8:89770442-89770542 ( 20) CAGCCAGC 1 chr10:8111687-8111787 ( 11) CAGCCAGC 1 chr13:73032963-73033063 ( 19) CAGCCAGC 1 chr9:118003148-118003248 ( 36) CAGCCAGC 1 chr11:37140398-37140498 ( 60) CAGCCAGC 1 chr10:118569227-11856932 ( 57) CAGCCAGC 1 chr17:75087276-75087376 ( 24) CAGGCAGC 1 chr9:29316787-29316887 ( 63) CAGGCAGC 1 chr5:19546408-19546508 ( 44) CAGGCAGC 1 chr1:188093550-188093650 ( 77) CAGGCAGC 1 chr12:80213698-80213798 ( 38) CAGGCAGC 1 chr6:32327110-32327210 ( 22) CAGGCAGC 1 chr15:82938152-82938252 ( 65) CAGGCAGC 1 chr2:178263843-178263943 ( 80) CAGGCAGC 1 chr3:80891034-80891134 ( 39) CAGGCAGC 1 chr9:20702034-20702134 ( 70) CAGGCAGC 1 chr2:106355821-106355921 ( 84) CAGGCAGC 1 chr12:105962609-10596270 ( 78) CAGGCAGC 1 chr8:14474812-14474912 ( 23) CAGGCAGC 1 chr1:164218566-164218666 ( 18) CAGCAAGC 1 chr17:26892685-26892785 ( 2) CAGCAAGC 1 chr15:41492073-41492173 ( 79) CAGCAAGC 1 chr5:52087029-52087129 ( 15) CAGCAAGC 1 chr8:10448504-10448604 ( 66) CAGCAAGC 1 chr3:27009515-27009615 ( 8) CAGCAAGC 1 chr1:176239483-176239583 ( 32) CAGCAAGC 1 chr13:80709584-80709684 ( 39) CAGCAAGC 1 chr17:8626254-8626354 ( 84) CAGCAAGC 1 chr9:62488584-62488684 ( 30) CAGCAAGC 1 chr9:23249972-23250072 ( 82) CAGCAAGC 1 chr10:83062270-83062370 ( 70) CAGCAAGC 1 chr6:8627315-8627415 ( 25) CAGGAAGC 1 chr12:29083814-29083914 ( 12) CAGGAAGC 1 chr2:145196071-145196171 ( 10) CAGGAAGC 1 chr14:30248145-30248245 ( 38) CAGGAAGC 1 chr3:145705301-145705401 ( 63) CAGGAAGC 1 chr16:92954393-92954493 ( 25) CAGGAAGC 1 chr6:67158707-67158807 ( 17) CAGGAAGC 1 chr8:126334951-126335051 ( 30) CAGGAAGC 1 chr15:27769050-27769150 ( 82) CAGGAAGC 1 chr15:27783525-27783625 ( 81) CAGGAAGC 1 chr11:117610568-11761066 ( 15) CAGGAAGC 1 chr13:110151730-11015183 ( 61) GAGCCAGC 1 chr9:89973846-89973946 ( 52) GAGCCAGC 1 chr19:20836037-20836137 ( 1) GAGCCAGC 1 chr15:12700308-12700408 ( 31) GAGCCAGC 1 chr6:135951582-135951682 ( 80) GAGCCAGC 1 chr2:10831241-10831341 ( 60) GAGCCAGC 1 chr12:5322889-5322989 ( 76) GAGCCAGC 1 chr16:6946160-6946260 ( 32) GAGCCAGC 1 chr13:114009789-11400988 ( 44) GAGCCAGC 1 chr13:52278733-52278833 ( 14) GAGCCAGC 1 chr14:59838408-59838508 ( 4) GAGCCAGC 1 chr4:104455404-104455504 ( 56) GAGGCAGC 1 chr13:91915324-91915424 ( 45) GAGGCAGC 1 chr2:42470285-42470385 ( 51) GAGGCAGC 1 chr2:168626220-168626320 ( 7) GAGGCAGC 1 chr13:30628371-30628471 ( 42) GAGGCAGC 1 chr15:58588993-58589093 ( 37) GAGCAAGC 1 chr5:149335779-149335879 ( 20) GAGCAAGC 1 chr6:92787211-92787311 ( 5) GAGCAAGC 1 chr16:21333128-21333228 ( 45) GAGCAAGC 1 chr10:105489665-10548976 ( 1) GAGCAAGC 1 chr8:33468443-33468543 ( 6) GAGCAAGC 1 chr18:56756251-56756351 ( 23) GAGGAAGC 1 chr1:24304591-24304691 ( 68) GAGGAAGC 1 chr3:138686705-138686805 ( 7) GAGGAAGC 1 chr18:82592337-82592437 ( 34) GAGGAAGC 1 chr15:36429833-36429933 ( 81) GAGGAAGC 1 chr8:52704001-52704101 ( 63) GAGGAAGC 1 chr7:115388923-115389023 ( 67) GAGGAAGC 1 chr8:8354914-8355014 ( 82) CCGCCAGC 1 chr6:28591771-28591871 ( 78) CCGGCAGC 1 chr3:85465569-85465669 ( 79) CCGCAAGC 1 chr9:67632439-67632539 ( 6) CCGCAAGC 1 chr12:44857989-44858089 ( 23) CAGCCCGC 1 chr8:12126152-12126252 ( 16) CAGCCCGC 1 chr6:82863459-82863559 ( 85) CAGCCCGC 1 chr18:8478111-8478211 ( 49) CCGGAAGC 1 chr6:131433520-131433620 ( 15) CAGGCCGC 1 chr19:51142493-51142593 ( 12) GCGCCAGC 1 chrX:99216454-99216554 ( 11) GCGCAAGC 1 chr17:8468671-8468771 ( 54) CAGGACGC 1 chr9:43945126-43945226 ( 69) GCGGAAGC 1 chr10:67377869-67377969 ( 25) GCGGAAGC 1 chr14:34777770-34777870 ( 28) GAGCACGC 1 chr13:47319552-47319652 ( 3) GAGGACGC 1 chr10:93681204-93681304 ( 26) CCGCCCGC 1 chr2:30707958-30708058 ( 81) GCGGCCGC 1 chr16:94720946-94721046 ( 11) GCGCACGC 1 chr10:74053021-74053121 ( 23) ACGCCAGC 1 chr2:45776297-45776397 ( 53) CCGGATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSMAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.2879 E= 1.7e-002 -470 140 78 -1321 164 -62 -1321 -1321 -1321 -1321 214 -1321 -1321 122 106 -1321 86 116 -1321 -1321 169 -111 -1321 -470 -1321 -1321 214 -1321 -1321 214 -1321 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSMAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 1.7e-002 0.010526 0.600000 0.389474 0.000000 0.852632 0.147368 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.526316 0.473684 0.000000 0.494737 0.505263 0.000000 0.000000 0.884211 0.105263 0.000000 0.010526 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGSMAGC MEME-5 regular expression -------------------------------------------------------------------------------- [CG]AG[CG][CA]AGC -------------------------------------------------------------------------------- Time 2369.83 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCWGCTGCWG MEME-6 width = 11 sites = 36 llr = 388 E-value = 7.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCWGCTGCWG MEME-6 Description -------------------------------------------------------------------------------- Simplified A :115:1:114: pos.-specific C :39::9:18:: probability G 16:2a::8::a matrix T 9::3::a:16: bits 2.1 * * 1.9 * * * 1.7 * *** * 1.5 * * *** * Relative 1.3 * * *** * Entropy 1.1 * * ***** * (15.5 bits) 0.9 *** ******* 0.6 *** ******* 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel TGCAGCTGCTG consensus C T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCTGCWG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr4:104455404-104455504 + 78 1.73e-07 TGCTCTTGCT TGCAGCTGCTG ACTCTGACCC chr6:22794206-22794306 + 22 1.73e-07 TGATCTTCAT TGCAGCTGCTG ATTACTGAGA chr12:89685663-89685763 + 63 1.73e-07 AGAGAGAAGT TGCAGCTGCTG AGACTTTAGG chr11:36381589-36381689 + 29 3.45e-07 GCGTCCTTTC TGCTGCTGCTG GGATCTAGGT chr6:103613113-103613213 - 84 3.45e-07 TACTGT TGCTGCTGCTG CCACCGCCGC chr6:82863459-82863559 - 2 3.45e-07 GAGCTCTGTC TGCTGCTGCTG T chr2:68332702-68332802 - 35 5.18e-07 GTGAAGGGCC TGCAGCTGCAG GCTATTTTGA chr2:72324246-72324346 + 16 5.18e-07 TGTTGAGTTA TGCAGCTGCAG AAGATTGTAC chr16:29693253-29693353 + 36 6.90e-07 CAAATTCTTT TCCAGCTGCTG AATTGCTGAT chr4:148671466-148671566 - 5 1.81e-06 AGAGATTCAT TCCGGCTGCTG ATAT chr1:161170618-161170718 - 53 2.54e-06 GGTTGCACCC TGCAGCTCCTG TATGCGGTCC chr5:54543522-54543622 + 3 3.10e-06 GA TGCTGCTGATG GTGTGATGTT chr9:29472175-29472275 - 40 3.83e-06 GGAGGCCACA GGCTGCTGCTG CCAGGGCCCC chr2:138475782-138475882 + 75 4.35e-06 ATTCTCATTA TGCAGCTGTTG TGAGCCCAAG chr3:85214761-85214861 - 24 4.35e-06 GAAACTCCCT GGCAGCTGCAG CACTGCAGCA chr18:36153533-36153633 - 2 4.77e-06 CTTCGGTGTT TCCAGCTGATG G chr19:55449053-55449153 - 16 5.50e-06 GGGCTCTGAC TGAAGCTGCTG ACAGAGGGTA chr16:42189366-42189466 + 36 6.26e-06 AACAAAAAGA TGCGGCTGATG GTGGCAGGGA chr4:104686327-104686427 - 80 7.05e-06 CTGTTCAGGC TGCTGCTCCAG CCACATCCTT chr15:89623502-89623602 + 21 7.67e-06 AATAGCCTTT TCCTGCTACTG CGTTGACAGT chr17:86582274-86582374 + 80 9.02e-06 CTGGGCCAAG TGCAGATGCTG CTGCTCTAAA chr12:54489604-54489704 + 80 9.02e-06 TCCACCTAGA GCCTGCTGCTG GTAAGACCTA chr3:35224809-35224909 - 42 9.02e-06 CTCCTGCTCC TCCTGCTCCTG CTCTTCCTCT chr12:80213698-80213798 - 66 9.96e-06 GTCATTTGGG TACAGCTGCAG AGGCTCCCTG chr9:32735876-32735976 + 74 9.96e-06 AATGAAGGCT TCCAGCTCCAG GGTTGTGAAA chr6:43574882-43574982 - 85 9.96e-06 TAACT TCCAGCTGTTG AAGTTAATTC chr4:149798019-149798119 + 60 1.03e-05 AAGACACTAT TGCGGCTACAG AGTTAGGAAC chr18:38087186-38087286 - 53 1.12e-05 CCATTCAGCA GGCGGCTGCAG CCCACATCTG chr6:21591938-21592038 - 51 1.21e-05 TGGATTTCAT TCCTGCTGAAG GGGAGGAGTT chr1:35495891-35495991 + 82 1.39e-05 TCAGCGTGAA TGATGCTGCAG CAGTGGGG chr3:86434508-86434608 - 16 1.39e-05 CACGTCTGTA TACTGCTGCAG TATTCCCAGT chr2:5249841-5249941 - 10 1.39e-05 CAGCGGAACT TGAGGCTGCTG AGGCACTGG chr13:47319552-47319652 + 33 1.47e-05 GCCCTCTGAT TGCAGCTAATG ACTCCCAGCT chr8:61256006-61256106 - 13 1.65e-05 AAGCCGCTCA TCCGGCTACAG GGCCCAGGCT chr3:69342237-69342337 - 67 1.94e-05 CCTTGAGTGA TCCAGATGCAG CTGGTCTCCC chr5:74147657-74147757 - 46 2.73e-05 GCTTGTCTGG TGCAGCTATAG CTCAGAACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCTGCWG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:104455404-104455504 1.7e-07 77_[+6]_12 chr6:22794206-22794306 1.7e-07 21_[+6]_68 chr12:89685663-89685763 1.7e-07 62_[+6]_27 chr11:36381589-36381689 3.5e-07 28_[+6]_61 chr6:103613113-103613213 3.5e-07 83_[-6]_6 chr6:82863459-82863559 3.5e-07 1_[-6]_88 chr2:68332702-68332802 5.2e-07 34_[-6]_55 chr2:72324246-72324346 5.2e-07 15_[+6]_74 chr16:29693253-29693353 6.9e-07 35_[+6]_54 chr4:148671466-148671566 1.8e-06 4_[-6]_85 chr1:161170618-161170718 2.5e-06 52_[-6]_37 chr5:54543522-54543622 3.1e-06 2_[+6]_87 chr9:29472175-29472275 3.8e-06 39_[-6]_50 chr2:138475782-138475882 4.4e-06 74_[+6]_15 chr3:85214761-85214861 4.4e-06 23_[-6]_66 chr18:36153533-36153633 4.8e-06 1_[-6]_88 chr19:55449053-55449153 5.5e-06 15_[-6]_74 chr16:42189366-42189466 6.3e-06 35_[+6]_54 chr4:104686327-104686427 7e-06 79_[-6]_10 chr15:89623502-89623602 7.7e-06 20_[+6]_69 chr17:86582274-86582374 9e-06 79_[+6]_10 chr12:54489604-54489704 9e-06 79_[+6]_10 chr3:35224809-35224909 9e-06 41_[-6]_48 chr12:80213698-80213798 1e-05 65_[-6]_24 chr9:32735876-32735976 1e-05 73_[+6]_16 chr6:43574882-43574982 1e-05 84_[-6]_5 chr4:149798019-149798119 1e-05 59_[+6]_30 chr18:38087186-38087286 1.1e-05 52_[-6]_37 chr6:21591938-21592038 1.2e-05 50_[-6]_39 chr1:35495891-35495991 1.4e-05 81_[+6]_8 chr3:86434508-86434608 1.4e-05 15_[-6]_74 chr2:5249841-5249941 1.4e-05 9_[-6]_80 chr13:47319552-47319652 1.5e-05 32_[+6]_57 chr8:61256006-61256106 1.7e-05 12_[-6]_77 chr3:69342237-69342337 1.9e-05 66_[-6]_23 chr5:74147657-74147757 2.7e-05 45_[-6]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCTGCWG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCWGCTGCWG width=11 seqs=36 chr4:104455404-104455504 ( 78) TGCAGCTGCTG 1 chr6:22794206-22794306 ( 22) TGCAGCTGCTG 1 chr12:89685663-89685763 ( 63) TGCAGCTGCTG 1 chr11:36381589-36381689 ( 29) TGCTGCTGCTG 1 chr6:103613113-103613213 ( 84) TGCTGCTGCTG 1 chr6:82863459-82863559 ( 2) TGCTGCTGCTG 1 chr2:68332702-68332802 ( 35) TGCAGCTGCAG 1 chr2:72324246-72324346 ( 16) TGCAGCTGCAG 1 chr16:29693253-29693353 ( 36) TCCAGCTGCTG 1 chr4:148671466-148671566 ( 5) TCCGGCTGCTG 1 chr1:161170618-161170718 ( 53) TGCAGCTCCTG 1 chr5:54543522-54543622 ( 3) TGCTGCTGATG 1 chr9:29472175-29472275 ( 40) GGCTGCTGCTG 1 chr2:138475782-138475882 ( 75) TGCAGCTGTTG 1 chr3:85214761-85214861 ( 24) GGCAGCTGCAG 1 chr18:36153533-36153633 ( 2) TCCAGCTGATG 1 chr19:55449053-55449153 ( 16) TGAAGCTGCTG 1 chr16:42189366-42189466 ( 36) TGCGGCTGATG 1 chr4:104686327-104686427 ( 80) TGCTGCTCCAG 1 chr15:89623502-89623602 ( 21) TCCTGCTACTG 1 chr17:86582274-86582374 ( 80) TGCAGATGCTG 1 chr12:54489604-54489704 ( 80) GCCTGCTGCTG 1 chr3:35224809-35224909 ( 42) TCCTGCTCCTG 1 chr12:80213698-80213798 ( 66) TACAGCTGCAG 1 chr9:32735876-32735976 ( 74) TCCAGCTCCAG 1 chr6:43574882-43574982 ( 85) TCCAGCTGTTG 1 chr4:149798019-149798119 ( 60) TGCGGCTACAG 1 chr18:38087186-38087286 ( 53) GGCGGCTGCAG 1 chr6:21591938-21592038 ( 51) TCCTGCTGAAG 1 chr1:35495891-35495991 ( 82) TGATGCTGCAG 1 chr3:86434508-86434608 ( 16) TACTGCTGCAG 1 chr2:5249841-5249941 ( 10) TGAGGCTGCTG 1 chr13:47319552-47319652 ( 33) TGCAGCTAATG 1 chr8:61256006-61256106 ( 13) TCCGGCTACAG 1 chr3:69342237-69342337 ( 67) TCCAGATGCAG 1 chr5:74147657-74147757 ( 46) TGCAGCTATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCTGCWG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.9548 E= 7.1e-005 -1181 -1181 -103 170 -230 43 150 -1181 -171 202 -1181 -1181 87 -1181 -44 29 -1181 -1181 214 -1181 -230 206 -1181 -1181 -1181 -1181 -1181 187 -98 -103 173 -1181 -98 178 -1181 -171 51 -1181 -1181 116 -1181 -1181 214 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCTGCWG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 36 E= 7.1e-005 0.000000 0.000000 0.111111 0.888889 0.055556 0.305556 0.638889 0.000000 0.083333 0.916667 0.000000 0.000000 0.500000 0.000000 0.166667 0.333333 0.000000 0.000000 1.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.138889 0.111111 0.750000 0.000000 0.138889 0.777778 0.000000 0.083333 0.388889 0.000000 0.000000 0.611111 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCTGCWG MEME-6 regular expression -------------------------------------------------------------------------------- T[GC]C[AT]GCTGC[TA]G -------------------------------------------------------------------------------- Time 2792.42 secs. ******************************************************************************** ******************************************************************************** MOTIF CHCCTCCCCCTCSYC MEME-7 width = 15 sites = 15 llr = 200 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CHCCTCCCCCTCSYC MEME-7 Description -------------------------------------------------------------------------------- Simplified A :31::1:1122:1:: pos.-specific C 939a:78778:955a probability G ::1:12231::14:: matrix T 15::9:::1:8::5: bits 2.1 * * 1.9 * * 1.7 * * * 1.5 * *** * * * Relative 1.3 * *** * * * * Entropy 1.1 * *** ** *** ** (19.3 bits) 0.9 * ********** ** 0.6 * ************* 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CTCCTCCCCCTCCTC consensus A GGG AA GC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCCCCTCSYC MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr18:78882258-78882358 - 51 3.91e-09 GTGTAATTAT CACCTCCCCCTCCCC CTCCAAGTCA chr14:30248145-30248245 - 8 8.80e-09 CTGCTAAGAG CTCCTGCCCCTCGTC CTGGAGG chr6:32327110-32327210 - 6 2.53e-08 AGCTGCCTGG CTCCTACCCCTCCCC ACGCC chr3:35224809-35224909 - 5 3.72e-08 TGCTCCTTCT CTCCTGCGCCTCCTC TTCT chr12:89685663-89685763 + 38 1.14e-07 ACATAATGTT CTCCTCCCCATCACC AGAGAGAAGT chr13:43230153-43230253 - 54 1.26e-07 GTTCTTTCCA CCCCTGCCCATCCCC ACCTCCTGCC chr12:7191834-7191934 + 48 2.59e-07 AGCTGAATGT CACCTCCCACACCCC ATCAAGTTCA chr19:47348487-47348587 + 70 3.19e-07 GCCCGAAGCC TCCCTCCCCATCCTC CCTCCCATCA chr4:46891368-46891468 - 13 3.19e-07 TCACCTGCTT CTCCTCCACCACGTC CTTCACACAT chr2:151603459-151603559 + 17 3.56e-07 GTCTTCTTAA CTCCTCCCTCTCATC ATAGCCCGAG chr1:183108640-183108740 + 13 3.90e-07 AGCGCTTTGG CTCCTCCCCCAGGTC AGAGCCTACT chr5:148760302-148760402 - 29 6.57e-07 CCCACTCACT CACCTCGGACTCCTC TCCAGATTTA chr19:56423609-56423709 - 15 1.27e-06 GTGGGGGGGA CAGCTCGGCCTCGTC TTTCTCGTCT chr16:15084716-15084816 + 57 2.31e-06 GGAGCCGGCC TCCCTCGCGCTCGCC GCCGCGCTGC chr2:21141621-21141721 + 85 8.65e-06 TTCGCATTTA CCACGACGCCTCGCC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCCCCTCSYC MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:78882258-78882358 3.9e-09 50_[-7]_35 chr14:30248145-30248245 8.8e-09 7_[-7]_78 chr6:32327110-32327210 2.5e-08 5_[-7]_80 chr3:35224809-35224909 3.7e-08 4_[-7]_81 chr12:89685663-89685763 1.1e-07 37_[+7]_48 chr13:43230153-43230253 1.3e-07 53_[-7]_32 chr12:7191834-7191934 2.6e-07 47_[+7]_38 chr19:47348487-47348587 3.2e-07 69_[+7]_16 chr4:46891368-46891468 3.2e-07 12_[-7]_73 chr2:151603459-151603559 3.6e-07 16_[+7]_69 chr1:183108640-183108740 3.9e-07 12_[+7]_73 chr5:148760302-148760402 6.6e-07 28_[-7]_57 chr19:56423609-56423709 1.3e-06 14_[-7]_71 chr16:15084716-15084816 2.3e-06 56_[+7]_29 chr2:21141621-21141721 8.7e-06 84_[+7]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCCCCTCSYC MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CHCCTCCCCCTCSYC width=15 seqs=15 chr18:78882258-78882358 ( 51) CACCTCCCCCTCCCC 1 chr14:30248145-30248245 ( 8) CTCCTGCCCCTCGTC 1 chr6:32327110-32327210 ( 6) CTCCTACCCCTCCCC 1 chr3:35224809-35224909 ( 5) CTCCTGCGCCTCCTC 1 chr12:89685663-89685763 ( 38) CTCCTCCCCATCACC 1 chr13:43230153-43230253 ( 54) CCCCTGCCCATCCCC 1 chr12:7191834-7191934 ( 48) CACCTCCCACACCCC 1 chr19:47348487-47348587 ( 70) TCCCTCCCCATCCTC 1 chr4:46891368-46891468 ( 13) CTCCTCCACCACGTC 1 chr2:151603459-151603559 ( 17) CTCCTCCCTCTCATC 1 chr1:183108640-183108740 ( 13) CTCCTCCCCCAGGTC 1 chr5:148760302-148760402 ( 29) CACCTCGGACTCCTC 1 chr19:56423609-56423709 ( 15) CAGCTCGGCCTCGTC 1 chr16:15084716-15084816 ( 57) TCCCTCGCGCTCGCC 1 chr2:21141621-21141721 ( 85) CCACGACGCCTCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCCCCTCSYC MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 12.4222 E= 2.9e+004 -1055 193 -1055 -103 -4 23 -1055 77 -203 193 -176 -1055 -1055 214 -1055 -1055 -1055 -1055 -176 177 -103 156 -18 -1055 -1055 182 -18 -1055 -203 156 23 -1055 -103 169 -176 -203 -45 182 -1055 -1055 -45 -1055 -1055 155 -1055 204 -176 -1055 -103 104 82 -1055 -1055 104 -1055 96 -1055 214 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCCCCTCSYC MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 15 E= 2.9e+004 0.000000 0.866667 0.000000 0.133333 0.266667 0.266667 0.000000 0.466667 0.066667 0.866667 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.066667 0.933333 0.133333 0.666667 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.066667 0.666667 0.266667 0.000000 0.133333 0.733333 0.066667 0.066667 0.200000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.933333 0.066667 0.000000 0.133333 0.466667 0.400000 0.000000 0.000000 0.466667 0.000000 0.533333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCCCCTCSYC MEME-7 regular expression -------------------------------------------------------------------------------- C[TAC]CCT[CG][CG][CG]C[CA][TA]C[CG][TC]C -------------------------------------------------------------------------------- Time 3209.08 secs. ******************************************************************************** ******************************************************************************** MOTIF WGVTKYCMTTTYTAAAAWTAG MEME-8 width = 21 sites = 18 llr = 260 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-8 Description -------------------------------------------------------------------------------- Simplified A 52211124121::96996:a1 pos.-specific C ::4::46411:62:1:::1:: probability G :73:5::::1::1:::::::7 matrix T 5119452286947131149:2 bits 2.1 1.9 * 1.7 * 1.5 * ** ** Relative 1.3 * * * ** ** Entropy 1.1 * ** * ** ** (20.8 bits) 0.9 ** * * **** ****** 0.6 ** **** * *********** 0.4 ** ****** *********** 0.2 ********************* 0.0 --------------------- Multilevel AGCTGTCCTTTCTAAAAATAG consensus TAG TCTA A T T T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr6:34125244-34125344 - 39 4.93e-10 GAGTGCATGA TGCTTCCCTTTCTAAAATTAT CTGGGGTGCA chr13:117676507-11767660 + 48 1.07e-09 AATATGCTAC AGGTGCACTTTTTAAAATTAG GAAAACACGA chr19:20836037-20836137 + 42 1.14e-08 ATCCGTTCAA AGCTGTCACTTCCATAAATAG TAGATTGTAC chr18:46771209-46771309 - 66 1.28e-08 TTTATAGACA AAATGTACTTTTTAAAAATAG GTCTACAGAG chr15:93656687-93656787 + 15 1.28e-08 ATGTCCTATA TACTGTCTCTTCTAAAAATAG CCCGGCACAT chr4:120023966-120024066 + 20 2.74e-08 ACGGAAGAGC AGATGCTCAATCTAAAATTAG GCTGCTGACT chr2:149675656-149675756 - 16 3.04e-08 TATTTATAGC ATGTTCCATTTTCAAAAATAG CCCCGGCGCT chr16:14056611-14056711 - 80 6.66e-08 . AGATATACTATTTAAAATTAG AGTGCAGCAG chr1:68955653-68955753 - 43 8.76e-08 TTGGCCTCGA AAATGTCCTTTTGACAAATAG AGAAGCAATG chr13:53777976-53778076 + 80 1.05e-07 CAGAGATAAT TGTTGCCATTTCTAAAATCAT chr11:57598182-57598282 - 29 1.25e-07 TGGCTCTCTC TGCTTCTTTCTCTTAAAATAG CTGCCTTTCT chr5:64389237-64389337 + 67 1.36e-07 AGGAATGGCA TGGTTCTATTTCCTTAAATAG TGACTTGGGA chr14:99520241-99520341 - 72 2.06e-07 GCTGTAAT TGCTTTCTTGATTATAATTAG TTACAGTACT chr1:143903880-143903980 - 30 3.54e-07 ATTTCCTAGC AGGTGCCAAGTTTAAATATAG GATGCAAGGG chr3:159871982-159872082 + 22 3.81e-07 CAATGTTTGA TTGTGTCATTTCTAATAATAA GCTAGACAGA chr13:26745330-26745430 + 45 4.74e-07 CACCATATGA AGCTATCCTCACTATAATTAT TCTCATCCAT chr15:43244910-43245010 + 25 1.13e-06 AGGCTCTAAT TATATTTCTATCTATAAATAG ATATACAGTT chr18:59383179-59383279 - 29 1.44e-06 GGGTGCATTT TGCTTACATATCGACAATTAA GTCTATGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:34125244-34125344 4.9e-10 38_[-8]_41 chr13:117676507-11767660 1.1e-09 47_[+8]_32 chr19:20836037-20836137 1.1e-08 41_[+8]_38 chr18:46771209-46771309 1.3e-08 65_[-8]_14 chr15:93656687-93656787 1.3e-08 14_[+8]_65 chr4:120023966-120024066 2.7e-08 19_[+8]_60 chr2:149675656-149675756 3e-08 15_[-8]_64 chr16:14056611-14056711 6.7e-08 79_[-8] chr1:68955653-68955753 8.8e-08 42_[-8]_37 chr13:53777976-53778076 1e-07 79_[+8] chr11:57598182-57598282 1.2e-07 28_[-8]_51 chr5:64389237-64389337 1.4e-07 66_[+8]_13 chr14:99520241-99520341 2.1e-07 71_[-8]_8 chr1:143903880-143903980 3.5e-07 29_[-8]_50 chr3:159871982-159872082 3.8e-07 21_[+8]_58 chr13:26745330-26745430 4.7e-07 44_[+8]_35 chr15:43244910-43245010 1.1e-06 24_[+8]_55 chr18:59383179-59383279 1.4e-06 28_[-8]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGVTKYCMTTTYTAAAAWTAG width=21 seqs=18 chr6:34125244-34125344 ( 39) TGCTTCCCTTTCTAAAATTAT 1 chr13:117676507-11767660 ( 48) AGGTGCACTTTTTAAAATTAG 1 chr19:20836037-20836137 ( 42) AGCTGTCACTTCCATAAATAG 1 chr18:46771209-46771309 ( 66) AAATGTACTTTTTAAAAATAG 1 chr15:93656687-93656787 ( 15) TACTGTCTCTTCTAAAAATAG 1 chr4:120023966-120024066 ( 20) AGATGCTCAATCTAAAATTAG 1 chr2:149675656-149675756 ( 16) ATGTTCCATTTTCAAAAATAG 1 chr16:14056611-14056711 ( 80) AGATATACTATTTAAAATTAG 1 chr1:68955653-68955753 ( 43) AAATGTCCTTTTGACAAATAG 1 chr13:53777976-53778076 ( 80) TGTTGCCATTTCTAAAATCAT 1 chr11:57598182-57598282 ( 29) TGCTTCTTTCTCTTAAAATAG 1 chr5:64389237-64389337 ( 67) TGGTTCTATTTCCTTAAATAG 1 chr14:99520241-99520341 ( 72) TGCTTTCTTGATTATAATTAG 1 chr1:143903880-143903980 ( 30) AGGTGCCAAGTTTAAATATAG 1 chr3:159871982-159872082 ( 22) TTGTGTCATTTCTAATAATAA 1 chr13:26745330-26745430 ( 45) AGCTATCCTCACTATAATTAT 1 chr15:43244910-43245010 ( 25) TATATTTCTATCTATAAATAG 1 chr18:59383179-59383279 ( 29) TGCTTACATATCGACAATTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 12.2285 E= 3.7e+002 87 -1081 -1081 87 -30 -1081 156 -130 -30 78 29 -130 -230 -1081 -1081 179 -130 -1081 114 51 -230 97 -1081 87 -71 143 -1081 -30 51 97 -1081 -71 -130 -103 -1081 151 -30 -103 -103 102 -130 -1081 -1081 170 -1081 143 -1081 51 -1081 -44 -103 140 170 -1081 -1081 -130 116 -103 -1081 2 179 -1081 -1081 -230 179 -1081 -1081 -230 102 -1081 -1081 70 -1081 -203 -1081 179 187 -1081 -1081 -1081 -130 -1081 167 -71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 18 E= 3.7e+002 0.500000 0.000000 0.000000 0.500000 0.222222 0.000000 0.666667 0.111111 0.222222 0.388889 0.277778 0.111111 0.055556 0.000000 0.000000 0.944444 0.111111 0.000000 0.500000 0.388889 0.055556 0.444444 0.000000 0.500000 0.166667 0.611111 0.000000 0.222222 0.388889 0.444444 0.000000 0.166667 0.111111 0.111111 0.000000 0.777778 0.222222 0.111111 0.111111 0.555556 0.111111 0.000000 0.000000 0.888889 0.000000 0.611111 0.000000 0.388889 0.000000 0.166667 0.111111 0.722222 0.888889 0.000000 0.000000 0.111111 0.611111 0.111111 0.000000 0.277778 0.944444 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.055556 0.555556 0.000000 0.000000 0.444444 0.000000 0.055556 0.000000 0.944444 1.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.722222 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGVTKYCMTTTYTAAAAWTAG MEME-8 regular expression -------------------------------------------------------------------------------- [AT][GA][CGA]T[GT][TC][CT][CA]T[TA]T[CT]TA[AT]AA[AT]TAG -------------------------------------------------------------------------------- Time 3622.50 secs. ******************************************************************************** ******************************************************************************** MOTIF VTGAYTCA MEME-9 width = 8 sites = 56 llr = 509 E-value = 8.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif VTGAYTCA MEME-9 Description -------------------------------------------------------------------------------- Simplified A 3::a:::a pos.-specific C 3:::6:a: probability G 4:a::::: matrix T :a::4a:: bits 2.1 * * 1.9 *** * 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 ******* (13.1 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGACTCA consensus C T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGAYTCA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr12:11757012-11757112 + 73 1.47e-05 tttccccttg gtgactca gggtttgctt chr7:75008447-75008547 - 65 1.47e-05 TTAGATGGCA GTGACTCA AGTGTCTTGG chr17:73263006-73263106 - 10 1.47e-05 ATCATTCCCG GTGACTCA GGCAGAAAG chrX:71029005-71029105 + 22 1.47e-05 AAATAGGCCT GTGACTCA CTCAGCAACC chr18:26104223-26104323 - 63 1.47e-05 GAGGAGGATG GTGACTCA ATGACAGCAA chr14:45561644-45561744 + 70 1.47e-05 TGCCAGCAGA GTGACTCA CACGAGCACA chr11:31392266-31392366 + 45 1.47e-05 TAGAGAGACA GTGACTCA TCCTTGCTCC chr3:145705301-145705401 + 18 1.47e-05 TTATCTGCTG GTGACTCA AGAGAGTGAC chr18:38791831-38791931 + 30 1.47e-05 ccctgaacgt gtgactca tgattatgca chr5:133267298-133267398 - 25 1.47e-05 GGAATTAGAC GTGACTCA TCACTGAGTG chr2:149987019-149987119 + 66 1.47e-05 CCATGACACA GTGACTCA TTTCAGCTGA chr11:35589819-35589919 - 64 1.47e-05 TGTGACTCAT GTGACTCA TATAATCACG chr3:120648319-120648419 - 73 1.47e-05 AAGGAACTAA GTGACTCA TTCAGACCCA chr6:53022043-53022143 + 74 1.47e-05 TGTGTGATTG GTGACTCA TACAGCCCAT chr11:86920337-86920437 + 5 2.95e-05 CCTT CTGACTCA GCTTTCCTCA chr12:44857989-44858089 + 6 2.95e-05 GCCTG CTGACTCA CCACCCATGG chr10:41830833-41830933 + 46 2.95e-05 AGGTGGCACT CTGACTCA ACTCAAGTCT chr6:94224978-94225078 + 60 2.95e-05 TTGCAGAAGA CTGACTCA ACTCTGGCCC chr7:74457639-74457739 + 66 2.95e-05 aaggatagga ctgactca tgagggttgt chr1:135536262-135536362 + 86 2.95e-05 ATGGGAAATT CTGACTCA CGGAGGG chr15:62039517-62039617 + 1 2.95e-05 . CTGACTCA TCCTGTTTTG chr13:114009789-11400988 + 60 2.95e-05 TCCTAAAACT CTGACTCA TATTCCTTGT chr6:46236970-46237070 + 12 2.95e-05 GAAGTAAATC CTGACTCA TCCTTCTCCT chr16:77644291-77644391 - 23 2.95e-05 GCATCTGATG CTGACTCA GAGCGCTTCT chr15:68810392-68810492 - 50 4.72e-05 CTCAGCAGCA GTGATTCA GTCACATAAT chr1:168188247-168188347 + 51 4.72e-05 GAACGTAATC GTGATTCA CTCTTGCTTC chr5:72041325-72041425 - 7 4.72e-05 GTTCTTCAGG GTGATTCA TGGACC chr5:100294202-100294302 + 36 4.72e-05 GAAAGGATGT GTGATTCA CAGCTAGCAT chr7:80561316-80561416 + 39 4.72e-05 GTTTGTCCTT GTGATTCA TTTGGTGGCT chr3:117602384-117602484 - 18 4.72e-05 ATTGCAGCAT GTGATTCA TGCACTTGGA chr13:52278733-52278833 - 33 4.72e-05 ACAGCTGGGA GTGATTCA TACATGGTGT chr9:43945126-43945226 + 42 6.50e-05 agtctacctc atgactca cgcctgccca chr4:25721537-25721637 - 79 6.50e-05 AATTGCTAAA ATGACTCA CAACAGTCTG chr11:93273846-93273946 - 80 6.50e-05 TGAGAAACCA ATGACTCA AATCGAGGAG chr1:151087832-151087932 - 54 6.50e-05 ACTGAGGCGG ATGACTCA GTGCGTGGAT chr19:58059546-58059646 + 79 6.50e-05 ATTTTTAAAC ATGACTCA GAGATCAAAC chr14:78900811-78900911 + 1 6.50e-05 . ATGACTCA TGTTTCCTTG chr4:86953368-86953468 - 85 6.50e-05 CCTGTCTG ATGACTCA TGCTCCATGT chr15:93656687-93656787 + 59 6.50e-05 CGGCTATAAT ATGACTCA GATGCTTCCC chr9:32033783-32033883 + 17 8.27e-05 TGTCTGGAAT CTGATTCA TCCTAAAGAT chr1:60860525-60860625 + 55 8.27e-05 TTAGATGTGG CTGATTCA ATGTGGGTGG chr5:88973842-88973942 - 2 8.27e-05 CAAGCTAAAA CTGATTCA G chr7:37564576-37564676 + 74 8.27e-05 CACATGTTCA CTGATTCA AACATTCTTT chr5:14325756-14325856 - 40 8.27e-05 AAGGAAAGTG CTGATTCA GAGGGTAACT chr12:94986233-94986333 + 63 8.27e-05 AACATCATCA CTGATTCA GACACCCAGA chr16:42189366-42189466 - 12 8.27e-05 TGTTCTTCTT CTGATTCA TGCACAGTCA chr16:14237196-14237296 + 31 8.27e-05 CTCAGCCTTG CTGATTCA GTAGAaattc chr3:116315508-116315608 + 35 8.27e-05 CCCCGTCTAT CTGATTCA TCGTGTGCAG chr15:30506453-30506553 - 2 1.04e-04 CACGGGGAAA ATGATTCA A chr2:145196071-145196171 + 79 1.04e-04 AAGGGAGAAC ATGATTCA TTCTGTTTCT chrX:61505064-61505164 - 28 1.04e-04 AGACAAAAGG ATGATTCA TATTCCAAGT chr19:57651028-57651128 - 35 1.04e-04 AGAAACTGCC ATGATTCA CCCCACACAG chr2:68989030-68989130 + 68 1.04e-04 CCTACATCCT ATGATTCA ACGAGGCAAA chr2:43948584-43948684 + 7 1.04e-04 TTATGG ATGATTCA TGAGAGGATT chr15:77196233-77196333 - 23 1.29e-04 CCTGTTGTTG GTGACTCG GAAAGGCTGT chr18:38836770-38836870 - 44 1.29e-04 TGAGTCCTGA GTGACGCA TAGTGAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGAYTCA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:11757012-11757112 1.5e-05 72_[+9]_20 chr7:75008447-75008547 1.5e-05 64_[-9]_28 chr17:73263006-73263106 1.5e-05 9_[-9]_83 chrX:71029005-71029105 1.5e-05 21_[+9]_71 chr18:26104223-26104323 1.5e-05 62_[-9]_30 chr14:45561644-45561744 1.5e-05 69_[+9]_23 chr11:31392266-31392366 1.5e-05 44_[+9]_48 chr3:145705301-145705401 1.5e-05 17_[+9]_75 chr18:38791831-38791931 1.5e-05 29_[+9]_63 chr5:133267298-133267398 1.5e-05 24_[-9]_68 chr2:149987019-149987119 1.5e-05 65_[+9]_27 chr11:35589819-35589919 1.5e-05 63_[-9]_29 chr3:120648319-120648419 1.5e-05 72_[-9]_20 chr6:53022043-53022143 1.5e-05 73_[+9]_19 chr11:86920337-86920437 2.9e-05 4_[+9]_88 chr12:44857989-44858089 2.9e-05 5_[+9]_87 chr10:41830833-41830933 2.9e-05 45_[+9]_47 chr6:94224978-94225078 2.9e-05 59_[+9]_33 chr7:74457639-74457739 2.9e-05 65_[+9]_27 chr1:135536262-135536362 2.9e-05 85_[+9]_7 chr15:62039517-62039617 2.9e-05 [+9]_92 chr13:114009789-11400988 2.9e-05 59_[+9]_33 chr6:46236970-46237070 2.9e-05 11_[+9]_81 chr16:77644291-77644391 2.9e-05 22_[-9]_70 chr15:68810392-68810492 4.7e-05 49_[-9]_43 chr1:168188247-168188347 4.7e-05 50_[+9]_42 chr5:72041325-72041425 4.7e-05 6_[-9]_86 chr5:100294202-100294302 4.7e-05 35_[+9]_57 chr7:80561316-80561416 4.7e-05 38_[+9]_54 chr3:117602384-117602484 4.7e-05 17_[-9]_75 chr13:52278733-52278833 4.7e-05 32_[-9]_60 chr9:43945126-43945226 6.5e-05 41_[+9]_51 chr4:25721537-25721637 6.5e-05 78_[-9]_14 chr11:93273846-93273946 6.5e-05 79_[-9]_13 chr1:151087832-151087932 6.5e-05 53_[-9]_39 chr19:58059546-58059646 6.5e-05 78_[+9]_14 chr14:78900811-78900911 6.5e-05 [+9]_92 chr4:86953368-86953468 6.5e-05 84_[-9]_8 chr15:93656687-93656787 6.5e-05 58_[+9]_34 chr9:32033783-32033883 8.3e-05 16_[+9]_76 chr1:60860525-60860625 8.3e-05 54_[+9]_38 chr5:88973842-88973942 8.3e-05 1_[-9]_91 chr7:37564576-37564676 8.3e-05 73_[+9]_19 chr5:14325756-14325856 8.3e-05 39_[-9]_53 chr12:94986233-94986333 8.3e-05 62_[+9]_30 chr16:42189366-42189466 8.3e-05 11_[-9]_81 chr16:14237196-14237296 8.3e-05 30_[+9]_62 chr3:116315508-116315608 8.3e-05 34_[+9]_58 chr15:30506453-30506553 0.0001 1_[-9]_91 chr2:145196071-145196171 0.0001 78_[+9]_14 chrX:61505064-61505164 0.0001 27_[-9]_65 chr19:57651028-57651128 0.0001 34_[-9]_58 chr2:68989030-68989130 0.0001 67_[+9]_25 chr2:43948584-43948684 0.0001 6_[+9]_86 chr15:77196233-77196333 0.00013 22_[-9]_70 chr18:38836770-38836870 0.00013 43_[-9]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGAYTCA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VTGAYTCA width=8 seqs=56 chr12:11757012-11757112 ( 73) GTGACTCA 1 chr7:75008447-75008547 ( 65) GTGACTCA 1 chr17:73263006-73263106 ( 10) GTGACTCA 1 chrX:71029005-71029105 ( 22) GTGACTCA 1 chr18:26104223-26104323 ( 63) GTGACTCA 1 chr14:45561644-45561744 ( 70) GTGACTCA 1 chr11:31392266-31392366 ( 45) GTGACTCA 1 chr3:145705301-145705401 ( 18) GTGACTCA 1 chr18:38791831-38791931 ( 30) GTGACTCA 1 chr5:133267298-133267398 ( 25) GTGACTCA 1 chr2:149987019-149987119 ( 66) GTGACTCA 1 chr11:35589819-35589919 ( 64) GTGACTCA 1 chr3:120648319-120648419 ( 73) GTGACTCA 1 chr6:53022043-53022143 ( 74) GTGACTCA 1 chr11:86920337-86920437 ( 5) CTGACTCA 1 chr12:44857989-44858089 ( 6) CTGACTCA 1 chr10:41830833-41830933 ( 46) CTGACTCA 1 chr6:94224978-94225078 ( 60) CTGACTCA 1 chr7:74457639-74457739 ( 66) CTGACTCA 1 chr1:135536262-135536362 ( 86) CTGACTCA 1 chr15:62039517-62039617 ( 1) CTGACTCA 1 chr13:114009789-11400988 ( 60) CTGACTCA 1 chr6:46236970-46237070 ( 12) CTGACTCA 1 chr16:77644291-77644391 ( 23) CTGACTCA 1 chr15:68810392-68810492 ( 50) GTGATTCA 1 chr1:168188247-168188347 ( 51) GTGATTCA 1 chr5:72041325-72041425 ( 7) GTGATTCA 1 chr5:100294202-100294302 ( 36) GTGATTCA 1 chr7:80561316-80561416 ( 39) GTGATTCA 1 chr3:117602384-117602484 ( 18) GTGATTCA 1 chr13:52278733-52278833 ( 33) GTGATTCA 1 chr9:43945126-43945226 ( 42) ATGACTCA 1 chr4:25721537-25721637 ( 79) ATGACTCA 1 chr11:93273846-93273946 ( 80) ATGACTCA 1 chr1:151087832-151087932 ( 54) ATGACTCA 1 chr19:58059546-58059646 ( 79) ATGACTCA 1 chr14:78900811-78900911 ( 1) ATGACTCA 1 chr4:86953368-86953468 ( 85) ATGACTCA 1 chr15:93656687-93656787 ( 59) ATGACTCA 1 chr9:32033783-32033883 ( 17) CTGATTCA 1 chr1:60860525-60860625 ( 55) CTGATTCA 1 chr5:88973842-88973942 ( 2) CTGATTCA 1 chr7:37564576-37564676 ( 74) CTGATTCA 1 chr5:14325756-14325856 ( 40) CTGATTCA 1 chr12:94986233-94986333 ( 63) CTGATTCA 1 chr16:42189366-42189466 ( 12) CTGATTCA 1 chr16:14237196-14237296 ( 31) CTGATTCA 1 chr3:116315508-116315608 ( 35) CTGATTCA 1 chr15:30506453-30506553 ( 2) ATGATTCA 1 chr2:145196071-145196171 ( 79) ATGATTCA 1 chrX:61505064-61505164 ( 28) ATGATTCA 1 chr19:57651028-57651128 ( 35) ATGATTCA 1 chr2:68989030-68989130 ( 68) ATGATTCA 1 chr2:43948584-43948684 ( 7) ATGATTCA 1 chr15:77196233-77196333 ( 23) GTGACTCG 1 chr18:38836770-38836870 ( 44) GTGACGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGAYTCA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 11.1824 E= 8.3e+004 -13 58 86 -1245 -1245 -1245 -1245 187 -1245 -1245 214 -1245 187 -1245 -1245 -1245 -1245 142 -1245 52 -1245 -1245 -366 184 -1245 214 -1245 -1245 184 -1245 -366 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGAYTCA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 8.3e+004 0.250000 0.339286 0.410714 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.607143 0.000000 0.392857 0.000000 0.000000 0.017857 0.982143 0.000000 1.000000 0.000000 0.000000 0.982143 0.000000 0.017857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGAYTCA MEME-9 regular expression -------------------------------------------------------------------------------- [GCA]TGA[CT]TCA -------------------------------------------------------------------------------- Time 4031.89 secs. ******************************************************************************** ******************************************************************************** MOTIF VSAGGCTG MEME-10 width = 8 sites = 54 llr = 495 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif VSAGGCTG MEME-10 Description -------------------------------------------------------------------------------- Simplified A 4:a::::: pos.-specific C 26:2:a:: probability G 44:8a::a matrix T ::::::a: bits 2.1 ** * 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.3 ******* Entropy 1.1 ******* (13.2 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAGGCTG consensus GG C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSAGGCTG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr13:29014500-29014600 + 39 1.02e-05 AGCTCCCATT GCAGGCTG GTCATGGGAC chr3:107357125-107357225 - 47 1.02e-05 AAGCTAGGCT GCAGGCTG TGCAGAGTTT chr9:62475889-62475989 + 40 1.02e-05 GTCACAAGAT GCAGGCTG CAGTAGCAAT chrX:71024636-71024736 + 35 1.02e-05 caggtcacta gcaggctg cattccttct chr6:33891898-33891998 + 49 1.02e-05 gggagctgct gcaggctg cttctctgcc chr2:174598486-174598586 + 54 1.02e-05 CCACACCAGG GCAGGCTG CTTACTAACC chr18:55548971-55549071 + 17 1.02e-05 GCAGGGACCA GCAGGCTG TCTGCGTATG chr3:116315508-116315608 - 50 1.02e-05 AGGCTGGGCT GCAGGCTG CACACGATGA chr4:55651060-55651160 + 44 1.02e-05 AGTGGCCGCG GCAGGCTG CTACACAATG chr1:168197882-168197982 + 20 1.02e-05 TAGTGTGTAG GCAGGCtg tccgcatatg chr6:18711170-18711270 - 4 2.25e-05 AAAAACCATT ACAGGCTG CAA chr12:55273697-55273797 + 27 2.25e-05 TGATCAAGTA ACAGGCTG GCTAAGGTCC chr9:49739824-49739924 - 33 2.25e-05 AGAACATCAG ACAGGCTG TTCCTGGTGG chr18:25658881-25658981 + 47 2.25e-05 TGGCGGGCGC ACAGGCTG GCGAGAGAGA chr9:77486864-77486964 - 61 2.25e-05 TTATTTAAGG ACAGGCTG GATGCAGGAG chr18:75660004-75660104 + 56 2.25e-05 GGGTAAATAA ACAGGCTG GGTAGGACAG chr2:117180438-117180538 - 13 2.25e-05 AGGCTTCCCC ACAGGCTG CAAGCATCCT chr5:39315258-39315358 - 76 2.25e-05 CAGCACAAGG ACAGGCTG CTCTGTGCTG chr6:28591771-28591871 - 19 2.25e-05 TTCATTCATT ACAGGCTG AGAGTTTAAA chr17:73263006-73263106 + 77 3.27e-05 GAGAGTGGGC GGAGGCTG AGTCATGTGA chr8:13630704-13630804 - 37 3.27e-05 GAAATAGCAA GGAGGCTG GGTACTAACT chr15:25802103-25802203 - 29 3.27e-05 AACACTCGCT GGAGGCTG GCAGAAAAGC chr15:36431143-36431243 - 11 3.27e-05 GTCAGCGTTT GGAGGCTG ATTATGGGAT chr12:100421534-10042163 + 17 3.27e-05 TTAGGTAGAA GGAGGCTG AGCCTGCTGA chr2:151603459-151603559 - 86 4.29e-05 TGGGACT CCAGGCTG AACAGGCAAC chr16:15084716-15084816 - 10 4.29e-05 CCCGGTGCGC CCAGGCTG GATTTCCTG chr1:176239483-176239583 + 60 4.29e-05 tgtgtctctt ccaggctg aggttaaggc chr6:29649755-29649855 - 84 4.29e-05 TGTTTTCAT CCAGGCTG TTAGTGCTTG chr2:168626220-168626320 + 24 4.29e-05 CTCCTTCCAC CCAGGCTG CCCTAGCAGA chr2:178263843-178263943 + 6 4.29e-05 CATGG CCAGGCTG TCCCAGGGAG chr9:20702034-20702134 - 34 4.29e-05 CCAGTCTTCT CCAGGCTG TGAGGCCAGG chr17:75087276-75087376 + 44 5.51e-05 CTAAAAGCTA AGAGGCTG CCCCTGAGCT chr14:124467634-12446773 - 11 5.51e-05 TGATGACTAA AGAGGCTG TGTAGCTCCT chr4:138036866-138036966 + 4 5.51e-05 CAG AGAGGCTG TGGGAGTGGA chr3:79114581-79114681 + 80 5.51e-05 AAAAGCAGCC AGAGGCTG CTGGGATAAT chr4:46891368-46891468 - 81 5.51e-05 ATCCTATAGG AGAGGCTG GGATTTCTCC chr13:99583866-99583966 + 47 5.51e-05 CAGGCCTGTA AGAGGCTG GCATTTCTCA chr9:67632439-67632539 + 86 5.51e-05 CAGGCCAGGG AGAGGCTG TGCGCGC chr9:29316787-29316887 - 26 6.53e-05 GTCCAGTGGG CGAGGCTG AGACCCACTC chr3:27009515-27009615 - 29 6.53e-05 GACACACAGT CGAGGCTG CAAAGGTTCT chr11:63290407-63290507 + 52 6.53e-05 AAATAATTCT CGAGGCTG AGAAGTCATA chr19:55449053-55449153 + 53 6.53e-05 ACTGCACATG CGAGGCTG TCATGCGTCA chr2:169849035-169849135 + 86 7.55e-05 CTGCTGGCTG GCACGCTG GGAGCCA chr17:5813875-5813975 + 48 7.55e-05 CCTTAATTCT GCACGCTG TAAGCAGAAA chr7:68048992-68049092 + 48 7.55e-05 TGGAGTAATG GCACGCTG ATGGAGCACA chr5:88958831-88958931 + 58 7.55e-05 TGTAATTGTG GCACGCTG AGCAATAGGG chr7:115388923-115389023 - 13 7.55e-05 GAAGAGTCGG GCACGCTG GAAAAAGAGA chr15:59032101-59032201 + 56 8.78e-05 AGTGCCATAC ACACGCTG ATTAAAGAAC chr2:107973500-107973600 - 67 8.78e-05 TGCAGGAGAG ACACGCTG GAGCCATCTA chr7:111495876-111495976 - 23 9.80e-05 CTTGGGTGAA GGACGCTG AAAAGGAAAA chr9:29472175-29472275 + 83 1.08e-04 ACCATGTGCA CCACGCTG GTTTACAGTG chr8:107667918-107668018 + 65 1.20e-04 GGACCCGAGG AGACGCTG AGCACAAGGC chr5:72068740-72068840 + 62 1.20e-04 AATAATATCC AGACGCTG GTGTGTGGCC chr13:30628371-30628471 - 15 1.20e-04 TCTGCCAGAC AGACGCTG TTCACATGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSAGGCTG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:29014500-29014600 1e-05 38_[+10]_54 chr3:107357125-107357225 1e-05 46_[-10]_46 chr9:62475889-62475989 1e-05 39_[+10]_53 chrX:71024636-71024736 1e-05 34_[+10]_58 chr6:33891898-33891998 1e-05 48_[+10]_44 chr2:174598486-174598586 1e-05 53_[+10]_39 chr18:55548971-55549071 1e-05 16_[+10]_76 chr3:116315508-116315608 1e-05 49_[-10]_43 chr4:55651060-55651160 1e-05 43_[+10]_49 chr1:168197882-168197982 1e-05 19_[+10]_73 chr6:18711170-18711270 2.2e-05 3_[-10]_89 chr12:55273697-55273797 2.2e-05 26_[+10]_66 chr9:49739824-49739924 2.2e-05 32_[-10]_60 chr18:25658881-25658981 2.2e-05 46_[+10]_46 chr9:77486864-77486964 2.2e-05 60_[-10]_32 chr18:75660004-75660104 2.2e-05 55_[+10]_37 chr2:117180438-117180538 2.2e-05 12_[-10]_80 chr5:39315258-39315358 2.2e-05 75_[-10]_17 chr6:28591771-28591871 2.2e-05 18_[-10]_74 chr17:73263006-73263106 3.3e-05 76_[+10]_16 chr8:13630704-13630804 3.3e-05 36_[-10]_56 chr15:25802103-25802203 3.3e-05 28_[-10]_64 chr15:36431143-36431243 3.3e-05 10_[-10]_82 chr12:100421534-10042163 3.3e-05 16_[+10]_76 chr2:151603459-151603559 4.3e-05 85_[-10]_7 chr16:15084716-15084816 4.3e-05 9_[-10]_83 chr1:176239483-176239583 4.3e-05 59_[+10]_33 chr6:29649755-29649855 4.3e-05 83_[-10]_9 chr2:168626220-168626320 4.3e-05 23_[+10]_69 chr2:178263843-178263943 4.3e-05 5_[+10]_87 chr9:20702034-20702134 4.3e-05 33_[-10]_59 chr17:75087276-75087376 5.5e-05 43_[+10]_49 chr14:124467634-12446773 5.5e-05 10_[-10]_82 chr4:138036866-138036966 5.5e-05 3_[+10]_89 chr3:79114581-79114681 5.5e-05 79_[+10]_13 chr4:46891368-46891468 5.5e-05 80_[-10]_12 chr13:99583866-99583966 5.5e-05 46_[+10]_46 chr9:67632439-67632539 5.5e-05 85_[+10]_7 chr9:29316787-29316887 6.5e-05 25_[-10]_67 chr3:27009515-27009615 6.5e-05 28_[-10]_64 chr11:63290407-63290507 6.5e-05 51_[+10]_41 chr19:55449053-55449153 6.5e-05 52_[+10]_40 chr2:169849035-169849135 7.6e-05 85_[+10]_7 chr17:5813875-5813975 7.6e-05 47_[+10]_45 chr7:68048992-68049092 7.6e-05 47_[+10]_45 chr5:88958831-88958931 7.6e-05 57_[+10]_35 chr7:115388923-115389023 7.6e-05 12_[-10]_80 chr15:59032101-59032201 8.8e-05 55_[+10]_37 chr2:107973500-107973600 8.8e-05 66_[-10]_26 chr7:111495876-111495976 9.8e-05 22_[-10]_70 chr9:29472175-29472275 0.00011 82_[+10]_10 chr8:107667918-107668018 0.00012 64_[+10]_28 chr5:72068740-72068840 0.00012 61_[+10]_31 chr13:30628371-30628471 0.00012 14_[-10]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSAGGCTG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VSAGGCTG width=8 seqs=54 chr13:29014500-29014600 ( 39) GCAGGCTG 1 chr3:107357125-107357225 ( 47) GCAGGCTG 1 chr9:62475889-62475989 ( 40) GCAGGCTG 1 chrX:71024636-71024736 ( 35) GCAGGCTG 1 chr6:33891898-33891998 ( 49) GCAGGCTG 1 chr2:174598486-174598586 ( 54) GCAGGCTG 1 chr18:55548971-55549071 ( 17) GCAGGCTG 1 chr3:116315508-116315608 ( 50) GCAGGCTG 1 chr4:55651060-55651160 ( 44) GCAGGCTG 1 chr1:168197882-168197982 ( 20) GCAGGCTG 1 chr6:18711170-18711270 ( 4) ACAGGCTG 1 chr12:55273697-55273797 ( 27) ACAGGCTG 1 chr9:49739824-49739924 ( 33) ACAGGCTG 1 chr18:25658881-25658981 ( 47) ACAGGCTG 1 chr9:77486864-77486964 ( 61) ACAGGCTG 1 chr18:75660004-75660104 ( 56) ACAGGCTG 1 chr2:117180438-117180538 ( 13) ACAGGCTG 1 chr5:39315258-39315358 ( 76) ACAGGCTG 1 chr6:28591771-28591871 ( 19) ACAGGCTG 1 chr17:73263006-73263106 ( 77) GGAGGCTG 1 chr8:13630704-13630804 ( 37) GGAGGCTG 1 chr15:25802103-25802203 ( 29) GGAGGCTG 1 chr15:36431143-36431243 ( 11) GGAGGCTG 1 chr12:100421534-10042163 ( 17) GGAGGCTG 1 chr2:151603459-151603559 ( 86) CCAGGCTG 1 chr16:15084716-15084816 ( 10) CCAGGCTG 1 chr1:176239483-176239583 ( 60) CCAGGCTG 1 chr6:29649755-29649855 ( 84) CCAGGCTG 1 chr2:168626220-168626320 ( 24) CCAGGCTG 1 chr2:178263843-178263943 ( 6) CCAGGCTG 1 chr9:20702034-20702134 ( 34) CCAGGCTG 1 chr17:75087276-75087376 ( 44) AGAGGCTG 1 chr14:124467634-12446773 ( 11) AGAGGCTG 1 chr4:138036866-138036966 ( 4) AGAGGCTG 1 chr3:79114581-79114681 ( 80) AGAGGCTG 1 chr4:46891368-46891468 ( 81) AGAGGCTG 1 chr13:99583866-99583966 ( 47) AGAGGCTG 1 chr9:67632439-67632539 ( 86) AGAGGCTG 1 chr9:29316787-29316887 ( 26) CGAGGCTG 1 chr3:27009515-27009615 ( 29) CGAGGCTG 1 chr11:63290407-63290507 ( 52) CGAGGCTG 1 chr19:55449053-55449153 ( 53) CGAGGCTG 1 chr2:169849035-169849135 ( 86) GCACGCTG 1 chr17:5813875-5813975 ( 48) GCACGCTG 1 chr7:68048992-68049092 ( 48) GCACGCTG 1 chr5:88958831-88958931 ( 58) GCACGCTG 1 chr7:115388923-115389023 ( 13) GCACGCTG 1 chr15:59032101-59032201 ( 56) ACACGCTG 1 chr2:107973500-107973600 ( 67) ACACGCTG 1 chr7:111495876-111495976 ( 23) GGACGCTG 1 chr9:29472175-29472275 ( 83) CCACGCTG 1 chr8:107667918-107668018 ( 65) AGACGCTG 1 chr5:72068740-72068840 ( 62) AGACGCTG 1 chr13:30628371-30628471 ( 15) AGACGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSAGGCTG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 11.6632 E= 1.7e+004 51 -3 78 -1240 -1240 147 71 -1240 187 -1240 -1240 -1240 -1240 -3 178 -1240 -1240 -1240 214 -1240 -1240 214 -1240 -1240 -1240 -1240 -1240 187 -1240 -1240 214 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSAGGCTG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.7e+004 0.388889 0.222222 0.388889 0.000000 0.000000 0.629630 0.370370 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VSAGGCTG MEME-10 regular expression -------------------------------------------------------------------------------- [AGC][CG]A[GC]GCTG -------------------------------------------------------------------------------- Time 4436.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:107879603-107879703 9.91e-01 100 chr17:51204541-51204641 6.50e-01 100 chr6:117574123-117574223 3.57e-01 100 chr14:99894023-99894123 2.80e-04 43_[-3(7.51e-06)]_42 chr2:55280839-55280939 5.41e-01 15_[+4(4.91e-05)]_77 chr1:9174403-9174503 3.34e-01 100 chr12:7191834-7191934 1.02e-03 1_[+4(2.45e-05)]_38_[+7(2.59e-07)]_\ 38 chrX:73560546-73560646 1.92e-01 100 chr5:53366879-53366979 5.09e-01 100 chr15:43244910-43245010 5.64e-02 24_[+8(1.13e-06)]_55 chr15:24596185-24596285 4.56e-05 65_[-1(9.97e-07)]_21 chr2:72220792-72220892 6.81e-01 100 chr10:118569227-11856932 6.42e-03 56_[+5(1.02e-05)]_36 chr1:168197882-168197982 9.79e-02 19_[+10(1.02e-05)]_73 chr9:40743496-40743596 1.15e-01 100 chr11:37140398-37140498 1.16e-02 59_[-5(1.02e-05)]_33 chr2:104208343-104208443 1.08e-01 24_[-4(7.36e-05)]_68 chr12:75101964-75102064 7.84e-02 100 chr6:53022043-53022143 5.34e-06 3_[+1(7.88e-05)]_39_[-3(2.26e-08)]_\ 2_[+9(1.47e-05)]_19 chr11:9731640-9731740 3.78e-03 23_[-9(2.95e-05)]_69 chr3:17788210-17788310 5.87e-01 100 chr12:56404801-56404901 4.87e-04 50_[+1(1.88e-08)]_36 chr1:21808984-21809084 4.01e-01 100 chr2:72324246-72324346 2.07e-04 15_[+6(5.18e-07)]_74 chr8:122953469-122953569 4.02e-01 100 chr14:106439254-10643935 1.90e-03 39_[-1(3.05e-08)]_47 chr8:14474812-14474912 6.96e-03 22_[-5(2.04e-05)]_70 chr2:126362956-126363056 5.12e-03 41_[+1(4.14e-07)]_45 chr15:93656687-93656787 8.31e-05 14_[+8(1.28e-08)]_23_[+9(6.50e-05)]_\ 34 chr8:33468443-33468543 9.15e-05 5_[+5(7.76e-05)]_41_[-3(1.44e-06)]_\ 31 chr4:55651060-55651160 3.47e-07 [+7(1.63e-05)]_16_[-2(9.60e-06)]_16_\ [+2(1.22e-05)]_11 chr12:100421534-10042163 7.33e-06 16_[+10(3.27e-05)]_49_\ [-3(1.56e-06)]_12 chr9:67632439-67632539 1.80e-03 16_[-7(7.82e-05)]_54_\ [+10(5.51e-05)]_7 chr1:30637356-30637456 3.10e-01 100 chr10:83062270-83062370 8.04e-02 69_[+5(3.27e-05)]_23 chr7:136871958-136872058 1.91e-01 100 chr10:93681204-93681304 4.75e-02 100 chr5:54543522-54543622 3.71e-02 2_[+6(3.10e-06)]_43_[-6(1.39e-05)]_\ 33 chr14:12571681-12571781 1.05e-02 69_[+3(3.47e-09)]_1_[+3(6.63e-10)] chr3:79004013-79004113 6.35e-01 100 chr16:67485654-67485754 8.86e-01 100 chr18:55133927-55134027 8.06e-01 100 chr14:59838408-59838508 4.55e-02 3_[-5(5.51e-05)]_89 chr16:90052883-90052983 8.27e-02 100 chr3:120648319-120648419 5.40e-01 19_[-9(1.47e-05)]_45_[-9(1.47e-05)]_\ 20 chr4:81564302-81564402 3.39e-03 24_[-1(1.36e-06)]_32_[+8(7.63e-06)]_\ 9 chr5:129300395-129300495 2.59e-04 80_[+9(2.95e-05)]_12 chr6:77871380-77871480 8.72e-01 100 chr14:66566525-66566625 8.15e-01 100 chr9:118003148-118003248 8.79e-04 4_[-5(2.04e-05)]_23_[+5(1.02e-05)]_\ 2_[+4(7.36e-05)]_33_[-6(2.47e-05)]_3 chr4:9399577-9399677 9.41e-03 42_[+3(5.30e-07)]_43 chr11:35589819-35589919 5.68e-03 63_[-9(1.47e-05)]_1_[-9(1.47e-05)]_\ 20 chr7:115388923-115389023 5.73e-02 12_[-10(7.55e-05)]_46_\ [+5(8.98e-05)]_26 chr4:62991204-62991304 1.70e-02 25_[-2(3.36e-06)]_54 chr15:67220788-67220888 8.02e-04 3_[+2(2.30e-06)]_32_[+8(9.07e-05)]_\ 23 chr2:54567562-54567662 5.08e-02 100 chr18:8478111-8478211 5.93e-02 40_[-2(5.40e-05)]_39 chr13:83987578-83987678 6.05e-01 100 chr9:23249972-23250072 4.98e-05 54_[+1(2.20e-06)]_19_[-5(1.02e-05)]_\ 5 chr13:52278733-52278833 1.05e-04 13_[+5(5.51e-05)]_11_[-9(4.72e-05)]_\ 3_[+4(2.45e-05)]_18_[-1(9.13e-06)]_17 chr19:56423609-56423709 1.69e-04 14_[-7(1.27e-06)]_6_[-2(3.91e-05)]_\ 44 chr3:80697565-80697665 9.73e-01 100 chr2:68148233-68148333 1.81e-01 100 chr18:69198275-69198375 8.67e-01 100 chr12:40657885-40657985 8.17e-01 92_[+10(4.29e-05)] chr10:20854883-20854983 2.61e-03 41_[-4(7.36e-05)]_51 chr13:100911911-10091201 9.96e-01 100 chr4:86953368-86953468 1.11e-02 25_[+1(4.69e-05)]_45_[-9(6.50e-05)]_\ 8 chr5:88958831-88958931 5.77e-04 57_[+10(7.55e-05)]_5_[+2(1.89e-06)]_\ 9 chr3:144617580-144617680 7.65e-02 88_[-4(4.91e-05)]_4 chr2:149675656-149675756 2.82e-02 15_[-8(3.04e-08)]_64 chr15:65308044-65308144 9.22e-01 100 chr18:73932862-73932962 2.16e-05 39_[-1(1.82e-06)]_47 chr2:21141621-21141721 9.30e-05 25_[+2(5.61e-10)]_38_[+7(8.65e-06)]_\ 1 chr3:117602384-117602484 2.98e-01 17_[-9(4.72e-05)]_75 chr9:13543134-13543234 5.97e-03 25_[+4(7.36e-05)]_6_[-6(8.96e-05)]_\ 50 chr12:29187550-29187650 5.68e-03 16_[-1(1.36e-06)]_70 chr2:125900897-125900997 9.16e-01 100 chr10:9525180-9525280 3.40e-01 100 chr2:68332702-68332802 8.66e-03 34_[-6(5.18e-07)]_55 chr13:73032963-73033063 7.04e-04 18_[+5(1.02e-05)]_74 chr9:45458911-45459011 3.66e-02 100 chr12:105962609-10596270 8.89e-03 77_[-5(2.04e-05)]_15 chr6:43574882-43574982 8.62e-02 84_[-6(9.96e-06)]_5 chr14:103553698-10355379 6.24e-01 100 chr2:106355821-106355921 7.34e-04 30_[-1(2.89e-06)]_39_[-5(2.04e-05)]_\ 9 chr9:29472175-29472275 3.67e-05 39_[-6(3.83e-06)]_50 chr3:69342237-69342337 1.58e-03 16_[+2(1.54e-05)]_29_[-6(1.94e-05)]_\ 23 chr8:44767228-44767328 2.11e-01 86_[-4(7.36e-05)]_6 chr15:54947847-54947947 7.82e-01 100 chr13:28729957-28730057 6.87e-01 100 chr18:38836770-38836870 1.70e-01 19_[+6(5.32e-05)]_70 chr8:79083349-79083449 2.81e-02 100 chr14:78900811-78900911 9.43e-03 [+9(6.50e-05)]_30_[+4(4.91e-05)]_32_\ [-4(7.36e-05)]_14 chr6:104792407-104792507 8.78e-01 100 chr14:59532036-59532136 2.77e-01 100 chr8:125538491-125538591 3.20e-02 49_[+4(4.91e-05)]_43 chr2:127182672-127182772 1.09e-01 100 chrX:21361330-21361430 4.70e-04 77_[-2(2.53e-06)]_2 chr15:89623502-89623602 1.18e-06 20_[+6(7.67e-06)]_30_[-1(1.07e-08)]_\ 25 chr12:29760394-29760494 1.39e-02 46_[-4(4.91e-05)]_46 chr2:5249841-5249941 1.41e-05 9_[-6(1.39e-05)]_13_[+4(4.91e-05)]_\ 59 chr9:62488584-62488684 1.47e-01 29_[+5(3.27e-05)]_63 chr3:85789871-85789971 9.99e-01 100 chr2:63061339-63061439 9.64e-01 100 chr9:116342970-116343070 2.95e-01 100 chr15:27346377-27346477 2.87e-01 100 chrX:161906627-161906727 1.68e-01 100 chr3:85214761-85214861 3.22e-02 23_[-6(4.35e-06)]_66 chr6:82863459-82863559 5.96e-08 1_[-6(3.45e-07)]_11_[-2(3.42e-05)]_\ 21_[+1(2.49e-05)]_9_[-5(2.04e-05)]_4 chr3:116315508-116315608 2.88e-03 34_[+9(8.27e-05)]_7_[-10(1.02e-05)]_\ 43 chr10:7274011-7274111 2.93e-02 65_[-4(7.36e-05)]_18_[-4(4.91e-05)]_\ 1 chr11:117610568-11761066 5.95e-03 14_[-5(4.49e-05)]_50_[-2(1.54e-05)]_\ 7 chr12:54404503-54404603 9.88e-04 49_[+1(4.69e-05)]_37 chr10:87159693-87159793 5.98e-01 100 chrX:166291269-166291369 9.24e-01 100 chr7:68048992-68049092 2.60e-01 47_[+10(7.55e-05)]_45 chr3:37896931-37897031 6.09e-06 20_[-2(5.28e-07)]_59 chr1:175303241-175303341 5.52e-05 77_[+3(3.47e-09)]_8 chr6:145495529-145495629 2.87e-01 100 chr13:112188151-11218825 2.20e-02 39_[+2(2.08e-05)]_19_[+4(4.91e-05)]_\ 13 chr4:87109614-87109714 1.89e-01 19_[-4(4.91e-05)]_73 chr15:25026809-25026909 1.40e-02 36_[-1(1.65e-05)]_50 chrX:161581878-161581978 9.45e-01 100 chr11:20773852-20773952 2.96e-01 100 chr13:45917254-45917354 3.91e-01 100 chr8:52704001-52704101 2.15e-03 41_[-4(2.45e-05)]_6_[-9(2.95e-05)]_\ 19_[-4(2.45e-05)]_10 chr4:120023966-120024066 9.42e-06 19_[+8(2.74e-08)]_60 chr8:8354914-8355014 6.42e-03 2_[-4(2.45e-05)]_13_[-4(2.45e-05)]_\ 50_[+5(9.83e-05)]_11 chr16:77644291-77644391 8.61e-08 22_[-9(2.95e-05)]_26_[-3(5.57e-08)]_\ 3_[+1(6.66e-05)]_12 chr13:63929314-63929414 8.60e-01 100 chr16:41696472-41696572 1.85e-01 56_[-3(5.34e-06)]_29 chr2:83332693-83332793 1.27e-01 13_[+2(2.98e-05)]_66 chr19:55449053-55449153 1.45e-03 15_[-6(5.50e-06)]_26_\ [+10(6.53e-05)]_40 chr9:116424970-116425070 2.19e-02 28_[+2(1.13e-05)]_51 chr4:76379587-76379687 9.48e-01 100 chr5:96768835-96768935 5.07e-01 100 chr1:22481901-22482001 3.70e-02 100 chr13:28758934-28759034 1.59e-01 77_[-4(2.45e-05)]_15 chr18:46771209-46771309 1.83e-02 65_[-8(1.28e-08)]_14 chr18:23461056-23461156 1.18e-04 7_[+4(4.91e-05)]_17_[-3(1.84e-06)]_\ 53 chr10:59564513-59564613 6.66e-01 100 chr18:55548971-55549071 1.70e-05 16_[+10(1.02e-05)]_39_\ [-2(2.61e-07)]_16 chr7:80561316-80561416 4.52e-03 38_[+9(4.72e-05)]_54 chr16:14237196-14237296 6.53e-03 30_[+9(8.27e-05)]_62 chr4:56231322-56231422 1.36e-01 100 chr12:89685663-89685763 1.07e-04 37_[+7(1.14e-07)]_10_[+6(1.73e-07)]_\ 27 chr16:42189366-42189466 6.91e-04 11_[-9(8.27e-05)]_16_[+6(6.26e-06)]_\ 54 chr17:11109897-11109997 4.59e-01 100 chr14:16181176-16181276 6.90e-01 100 chr4:138055412-138055512 6.69e-02 18_[+8(7.26e-05)]_61 chr13:110062153-11006225 4.53e-02 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chr15:12700308-12700408 3.11e-02 30_[+5(5.51e-05)]_62 chr15:50720157-50720257 2.29e-01 100 chr19:47348487-47348587 1.14e-07 21_[-4(4.91e-05)]_15_[-2(8.23e-08)]_\ 4_[+7(3.19e-07)]_16 chr8:102738725-102738825 8.45e-01 100 chr5:88973842-88973942 1.10e-01 1_[-9(8.27e-05)]_53_[+4(7.36e-05)]_\ 30 chr4:125962674-125962774 2.57e-04 61_[+1(1.68e-09)]_25 chr19:20836037-20836137 3.68e-04 [-5(5.51e-05)]_33_[+8(1.14e-08)]_38 chr3:86836699-86836799 9.88e-01 100 chr6:131433520-131433620 4.97e-05 5_[+7(4.18e-05)]_3_[+2(1.22e-05)]_\ 18_[+2(1.04e-05)]_17 chr14:30248145-30248245 4.49e-05 7_[-7(8.80e-09)]_15_[+5(4.49e-05)]_\ 55 chr2:133020359-133020459 4.85e-04 68_[-1(7.05e-09)]_18 chr8:10448504-10448604 4.05e-02 65_[+5(3.27e-05)]_27 chr1:57546444-57546544 1.48e-01 100 chr4:31150347-31150447 9.71e-01 100 chr11:112973375-11297347 7.85e-02 100 chr1:123974600-123974700 2.22e-04 16_[-1(7.96e-07)]_70 chr1:183108640-183108740 2.30e-02 12_[+7(3.90e-07)]_73 chr18:52935095-52935195 1.28e-04 61_[+1(8.45e-06)]_25 chr10:111724854-11172495 5.37e-01 100 chr2:30712000-30712100 6.23e-05 35_[-2(1.54e-06)]_21_[-4(2.45e-05)]_\ 15 chr11:12930739-12930839 8.77e-01 100 chr19:57651028-57651128 4.36e-02 100 chr5:89859552-89859652 7.28e-01 100 chr9:94362560-94362660 4.79e-01 100 chr15:67513696-67513796 6.32e-02 66_[+1(4.46e-06)]_20 chr3:79114581-79114681 4.67e-03 79_[+10(5.51e-05)]_13 chr9:43945126-43945226 7.78e-03 16_[-7(5.25e-06)]_10_[+9(6.50e-05)]_\ 51 chr16:94720946-94721046 5.80e-02 100 chr1:135536262-135536362 1.24e-01 85_[+9(2.95e-05)]_7 chr16:49908263-49908363 9.45e-04 67_[-3(4.78e-07)]_18 chr10:126664606-12666470 1.59e-01 100 chr14:45561644-45561744 1.97e-04 13_[+3(7.03e-06)]_41_[+9(1.47e-05)]_\ 4_[+3(5.88e-07)]_4 chr10:96488948-96489048 1.75e-01 100 chr17:8468671-8468771 4.17e-08 18_[-1(1.68e-09)]_45_[-4(2.45e-05)]_\ 15 chr6:148553567-148553667 1.45e-01 100 chr7:74457639-74457739 3.21e-01 65_[+9(2.95e-05)]_27 chr17:5284789-5284889 4.09e-01 100 chr12:55344986-55345086 3.69e-01 44_[-3(5.50e-05)]_41 chr13:57637645-57637745 9.90e-01 100 chr18:26104223-26104323 3.80e-05 28_[-6(2.03e-05)]_23_[-9(1.47e-05)]_\ 30 chr13:91915324-91915424 6.36e-03 44_[-5(6.53e-05)]_48 chrX:61505064-61505164 1.28e-01 100 chr16:38182445-38182545 9.99e-01 100 chr4:6880883-6880983 5.10e-01 100 chr3:40187063-40187163 5.25e-02 78_[-6(5.59e-05)]_11 chr4:138036866-138036966 2.21e-05 3_[+10(5.51e-05)]_20_[+1(3.76e-06)]_\ 55 chr16:15084716-15084816 3.15e-07 9_[-10(4.29e-05)]_10_[+2(7.37e-07)]_\ 8_[+7(2.31e-06)]_1_[+1(9.13e-06)]_14 chrX:85920432-85920532 4.13e-01 100 chr2:27969081-27969181 2.12e-01 100 chr14:121144972-12114507 1.95e-01 100 chr5:72403294-72403394 9.46e-01 100 chr17:59421754-59421854 3.32e-02 100 chr2:65471194-65471294 3.36e-02 100 chr3:54027291-54027391 1.21e-01 100 chr11:108995533-10899563 4.61e-01 100 chr11:62602514-62602614 1.86e-01 4_[+2(4.18e-05)]_19_[+2(3.42e-05)]_\ 11_[-2(3.19e-05)]_3 chr1:72141801-72141901 5.19e-01 100 chr3:85465569-85465669 1.07e-03 2_[+2(7.78e-05)]_77 chr5:9304225-9304325 3.33e-03 35_[+6(3.91e-05)]_27_[-1(7.88e-05)]_\ 13 chr17:64901414-64901514 3.14e-03 6_[+9(1.47e-05)]_86 chr18:65124667-65124767 3.19e-02 86_[-1(1.90e-05)] chr16:84969126-84969226 7.24e-01 100 chr5:149335779-149335879 5.04e-07 19_[-5(7.76e-05)]_51_[+1(1.14e-07)]_\ 8 chr18:75173257-75173357 3.42e-01 100 chr1:142982908-142983008 2.67e-01 100 chrX:71029005-71029105 1.46e-01 21_[+9(1.47e-05)]_71 chr5:74147657-74147757 1.26e-02 45_[-6(2.73e-05)]_29_[-1(4.69e-05)]_\ 1 chr16:78156488-78156588 7.22e-01 100 chr10:23214077-23214177 1.02e-01 100 chr1:60860525-60860625 1.71e-02 24_[+3(4.33e-06)]_15_[+9(8.27e-05)]_\ 38 chr12:55273697-55273797 3.74e-03 26_[+10(2.25e-05)]_66 chr18:36153533-36153633 3.24e-05 1_[-6(4.77e-06)]_6_[+2(3.06e-06)]_\ 61 chr7:55685158-55685258 5.47e-02 100 chr11:34470323-34470423 8.92e-02 100 chr11:57598182-57598282 9.61e-05 28_[-8(1.25e-07)]_8_[+2(5.07e-05)]_\ 22 chr14:124467634-12446773 2.52e-01 10_[-10(5.51e-05)]_82 chr5:100294202-100294302 6.16e-03 35_[+9(4.72e-05)]_57 chr16:5894320-5894420 4.95e-01 100 chr15:40791322-40791422 7.69e-01 100 chr1:162359171-162359271 7.11e-07 36_[-3(2.35e-07)]_10_[-1(4.60e-07)]_\ 25 chr9:29316787-29316887 1.84e-03 25_[-10(6.53e-05)]_11_\ [-4(2.45e-05)]_10_[-5(2.04e-05)]_30 chr11:109331234-10933133 5.97e-02 100 chr8:107667918-107668018 5.55e-02 100 chr2:146745724-146745824 2.13e-05 23_[+2(2.40e-10)]_56 chr14:99855412-99855512 3.09e-01 100 chr10:90379591-90379691 4.79e-01 100 chr18:56756251-56756351 3.59e-05 17_[-2(3.66e-05)]_7_[-2(2.04e-07)]_\ 34 chr9:89973846-89973946 5.78e-02 51_[+5(5.51e-05)]_41 chr17:29459483-29459583 3.11e-02 53_[+4(7.36e-05)]_39 chr10:112760357-11276045 6.93e-01 100 chr18:87121234-87121334 9.32e-04 65_[+5(1.02e-05)]_27 chr7:130381239-130381339 8.66e-03 47_[+7(7.57e-05)]_38 chr3:75705114-75705214 2.45e-01 100 chr10:24984979-24985079 9.37e-01 100 chr13:105212650-10521275 9.72e-01 100 chr7:99046825-99046925 2.30e-01 100 chr6:22794206-22794306 4.15e-06 21_[+6(1.73e-07)]_44_[+3(4.33e-06)]_\ 9 chr2:145196071-145196171 2.31e-03 9_[-5(4.49e-05)]_83 chr10:106715195-10671529 7.28e-01 100 chr2:151603459-151603559 3.79e-03 16_[+7(3.56e-07)]_54_\ [-10(4.29e-05)]_7 chr6:138171712-138171812 3.44e-01 100 chr7:111495876-111495976 3.79e-03 22_[-10(9.80e-05)]_13_\ [+3(1.04e-05)]_42 chr8:61256006-61256106 3.25e-03 12_[-6(1.65e-05)]_42_[+6(4.64e-05)]_\ 24 chr8:12126152-12126252 3.87e-05 89_[+4(2.45e-05)]_3 chr13:104013323-10401342 3.85e-02 100 chr2:169849035-169849135 4.58e-05 52_[+1(8.80e-07)]_11_[-5(1.02e-05)]_\ [+10(7.55e-05)]_7 chr13:31932618-31932718 5.61e-01 100 chr16:29734263-29734363 9.45e-01 100 chr1:119076979-119077079 4.71e-02 61_[-3(2.49e-05)]_24 chr13:26745330-26745430 1.95e-02 44_[+8(4.74e-07)]_35 chr6:18711170-18711270 3.18e-03 3_[-10(2.25e-05)]_65_[-4(4.91e-05)]_\ 16 chr5:52087029-52087129 2.13e-02 14_[-5(3.27e-05)]_78 chr2:68435724-68435824 4.19e-03 100 chr19:33102395-33102495 9.62e-01 100 chr15:41492073-41492173 3.17e-05 18_[+3(1.55e-07)]_45_[-5(3.27e-05)]_\ 14 chr13:104695011-10469511 6.07e-01 100 chr6:53449018-53449118 3.38e-01 100 chr17:26892685-26892785 1.81e-01 1_[-5(3.27e-05)]_91 chr6:94224978-94225078 1.30e-02 59_[+9(2.95e-05)]_33 chr13:5287527-5287627 3.76e-01 40_[+8(6.39e-05)]_39 chr5:66876825-66876925 7.75e-01 100 chr5:72041325-72041425 3.73e-02 6_[-9(4.72e-05)]_44_[+8(7.04e-05)]_\ 21 chr13:110151730-11015183 4.41e-01 60_[-5(5.51e-05)]_32 chr9:29358491-29358591 5.25e-02 100 chr10:41830833-41830933 7.44e-05 21_[+4(2.45e-05)]_1_[-1(4.85e-06)]_\ 1_[+9(2.95e-05)]_26_[+6(5.90e-05)]_10 chr5:6786926-6787026 7.15e-01 100 chr17:73263006-73263106 1.82e-03 9_[-9(1.47e-05)]_59_[+10(3.27e-05)]_\ 16 chr4:104686327-104686427 3.35e-03 79_[-6(7.05e-06)]_10 chr17:69201082-69201182 5.62e-01 100 chr12:54489604-54489704 4.32e-02 79_[+6(9.02e-06)]_10 chr4:108914335-108914435 6.05e-01 100 chr1:169459285-169459385 2.95e-01 22_[-1(8.78e-05)]_45_[+1(2.62e-06)]_\ 5 chr17:75087276-75087376 1.88e-02 23_[+5(2.04e-05)]_12_\ [+10(5.51e-05)]_49 chr5:91843789-91843889 2.98e-01 100 chr1:143903880-143903980 2.90e-04 29_[-8(3.54e-07)]_37_[-4(2.45e-05)]_\ 5 chr1:168188247-168188347 1.27e-05 12_[-1(5.71e-06)]_24_[+9(4.72e-05)]_\ 42 chr13:57347725-57347825 6.45e-01 100 chr16:14056611-14056711 3.62e-03 79_[-8(6.66e-08)] chr15:81128088-81128188 2.31e-01 100 chr1:142891796-142891896 5.04e-01 100 chr18:75194721-75194821 5.04e-01 100 chr11:35451529-35451629 7.67e-05 49_[+1(3.28e-07)]_37 chr4:85228480-85228580 3.50e-01 49_[+3(3.58e-05)]_36 chr16:52392962-52393062 3.35e-01 15_[-3(7.49e-05)]_70 chr7:75008447-75008547 7.27e-04 64_[-9(1.47e-05)]_28 chr5:57785308-57785408 1.00e-01 100 chr18:34169135-34169235 9.86e-01 100 chr12:102064880-10206498 1.09e-02 44_[-3(3.47e-09)]_41 chr5:47014289-47014389 4.97e-06 21_[-3(9.22e-05)]_14_[-1(1.88e-08)]_\ 36 chr18:29993731-29993831 1.53e-01 100 chr18:63769241-63769341 1.33e-01 100 chr5:128482979-128483079 4.22e-04 64_[+2(1.02e-06)]_15 chr4:104455404-104455504 6.93e-05 6_[+5(8.98e-05)]_41_[+5(6.53e-05)]_\ 14_[+6(1.73e-07)]_12 chr12:11757012-11757112 1.08e-01 72_[+9(1.47e-05)]_20 chr1:164218566-164218666 2.32e-02 17_[-5(3.27e-05)]_75 chr18:38087186-38087286 1.96e-03 52_[-6(1.12e-05)]_37 chr15:68810392-68810492 4.84e-02 49_[-9(4.72e-05)]_43 chr4:57489111-57489211 8.04e-01 100 chr7:115473819-115473919 6.97e-01 100 chr4:153874121-153874221 9.49e-01 100 chr9:32033783-32033883 4.05e-01 16_[+9(8.27e-05)]_76 chr11:119774811-11977491 4.43e-01 37_[-3(5.50e-05)]_48 chrX:99216454-99216554 2.19e-02 100 chr12:29083814-29083914 2.01e-03 11_[+5(4.49e-05)]_7_[-4(7.36e-05)]_\ 52_[-10(4.29e-05)]_6 chr19:36677475-36677575 3.75e-01 100 chr8:84456815-84456915 1.18e-03 12_[-4(2.45e-05)]_16_[-7(1.76e-05)]_\ 49 chr4:149798019-149798119 2.09e-04 59_[+6(1.03e-05)]_20_[+5(1.02e-05)]_\ 2 chr1:35495891-35495991 7.98e-02 81_[+6(1.39e-05)]_8 chr17:5285888-5285988 4.76e-02 18_[-3(6.02e-05)]_38_[+6(8.09e-05)]_\ 18 chr9:70622755-70622855 3.12e-01 2_[+4(7.36e-05)]_2_[+4(7.36e-05)]_2_\ [+4(7.36e-05)]_7_[+4(7.36e-05)]_12_[+4(7.36e-05)]_12_[+4(7.36e-05)]_6_\ [+4(7.36e-05)]_1 chr13:25982146-25982246 2.38e-01 2_[+4(2.45e-05)]_90 chr13:47319552-47319652 5.56e-03 [-10(9.80e-05)]_24_[+6(1.47e-05)]_\ 57 chr18:60891140-60891240 9.36e-04 26_[-2(8.22e-07)]_53 chr17:86582274-86582374 1.40e-02 79_[+6(9.02e-06)]_10 chr4:77558781-77558881 2.79e-01 32_[+1(1.65e-06)]_54 chr15:58588993-58589093 1.96e-02 36_[+5(7.76e-05)]_12_[+4(2.45e-05)]_\ 36 chr1:116147779-116147879 2.39e-01 100 chr19:24054787-24054887 2.61e-01 50_[+4(4.91e-05)]_42 chr15:30506453-30506553 2.50e-01 100 chr13:29014500-29014600 1.83e-06 38_[+10(1.02e-05)]_18_\ [-2(4.51e-09)]_15 chr13:52875577-52875677 4.70e-03 20_[+3(5.30e-07)]_65 chr10:117094808-11709490 1.95e-02 38_[-4(7.36e-05)]_54 chr15:31175843-31175943 6.33e-01 4_[+4(4.91e-05)]_2_[+4(4.91e-05)]_2_\ [+4(4.91e-05)]_2_[+4(4.91e-05)]_2_[+4(4.91e-05)]_2_[+4(4.91e-05)]_2_\ [+4(4.91e-05)]_2_[+4(4.91e-05)]_2_[+4(4.91e-05)]_8 chr1:143918893-143918993 9.72e-01 100 chr13:53777976-53778076 1.52e-01 51_[+8(9.66e-05)]_7_[+8(1.05e-07)] chr6:8627315-8627415 1.35e-02 7_[-5(6.53e-05)]_9_[+5(4.49e-05)]_\ 68 chr2:92278599-92278699 5.16e-04 [-8(3.80e-05)]_31_[+4(7.36e-05)]_40 chr12:44857989-44858089 4.30e-04 5_[+9(2.95e-05)]_87 chr6:18594576-18594676 5.58e-01 100 chr11:86920337-86920437 7.89e-02 4_[+9(2.95e-05)]_88 chr5:64389237-64389337 1.33e-02 66_[+8(1.36e-07)]_13 chr5:51477070-51477170 8.79e-01 100 chr18:68493806-68493906 1.50e-02 35_[-2(7.48e-06)]_44 chr17:12187694-12187794 9.35e-02 100 chr6:103613113-103613213 5.15e-09 47_[-6(2.54e-06)]_4_[+2(9.16e-07)]_\ [-6(3.45e-07)]_6 chr15:41193181-41193281 6.05e-02 65_[-4(4.91e-05)]_27 chr6:108324937-108325037 5.55e-01 100 chr16:29262917-29263017 5.03e-01 100 chr11:113167469-11316756 1.91e-01 100 chr11:36381589-36381689 1.61e-02 5_[+6(7.56e-05)]_12_[+6(3.45e-07)]_\ 61 chr11:84642119-84642219 1.03e-08 6_[+2(4.43e-06)]_12_[-1(1.65e-05)]_\ 9_[+3(6.63e-10)]_1_[+3(3.47e-09)]_7 chr3:55280946-55281046 5.51e-02 70_[-4(4.91e-05)]_22 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-39.local ********************************************************************************