******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:116499747-116499847 1.0000 100 chr17:26462560-26462660 1.0000 100 chr6:107421964-107422064 1.0000 100 chr14:78796729-78796829 1.0000 100 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chr6:92589297-92589397 1.0000 100 chr13:24548888-24548988 1.0000 100 chr5:44284339-44284439 1.0000 100 chr5:45298814-45298914 1.0000 100 chr13:110968034-11096813 1.0000 100 chr9:34736209-34736309 1.0000 100 chr10:69653201-69653301 1.0000 100 chr4:125462080-125462180 1.0000 100 chr17:82901027-82901127 1.0000 100 chr4:85273281-85273381 1.0000 100 chr17:73489800-73489900 1.0000 100 chr12:83169689-83169789 1.0000 100 chr4:86810501-86810601 1.0000 100 chr1:193447629-193447729 1.0000 100 chr17:84877775-84877875 1.0000 100 chr5:63624077-63624177 1.0000 100 chr1:169421759-169421859 1.0000 100 chr1:192244399-192244499 1.0000 100 chr13:60488609-60488709 1.0000 100 chr16:10055170-10055270 1.0000 100 chr15:78029824-78029924 1.0000 100 chr1:169257763-169257863 1.0000 100 chr18:77606402-77606502 1.0000 100 chr11:68216993-68217093 1.0000 100 chr4:65834034-65834134 1.0000 100 chr16:50732538-50732638 1.0000 100 chr7:64950395-64950495 1.0000 100 chr5:38355126-38355226 1.0000 100 chr18:36150522-36150622 1.0000 100 chr13:6127238-6127338 1.0000 100 chr5:20073588-20073688 1.0000 100 chr18:33794629-33794729 1.0000 100 chr18:65190920-65191020 1.0000 100 chr5:112551612-112551712 1.0000 100 chr4:85162676-85162776 1.0000 100 chr12:37908243-37908343 1.0000 100 chr1:188420542-188420642 1.0000 100 chr18:39196377-39196477 1.0000 100 chr15:70163343-70163443 1.0000 100 chr4:40875849-40875949 1.0000 100 chr7:113961501-113961601 1.0000 100 chr4:125261345-125261445 1.0000 100 chr9:40617195-40617295 1.0000 100 chr12:29281020-29281120 1.0000 100 chrX:99690954-99691054 1.0000 100 chr12:50999565-50999665 1.0000 100 chr19:41642952-41643052 1.0000 100 chr8:90000828-90000928 1.0000 100 chr4:114476776-114476876 1.0000 100 chr1:70894877-70894977 1.0000 100 chr17:6827219-6827319 1.0000 100 chr9:76419338-76419438 1.0000 100 chr13:37312506-37312606 1.0000 100 chr13:56112922-56113022 1.0000 100 chr18:62267212-62267312 1.0000 100 chr18:9414002-9414102 1.0000 100 chr4:57473165-57473265 1.0000 100 chr1:13268472-13268572 1.0000 100 chr1:157072544-157072644 1.0000 100 chr19:26318909-26319009 1.0000 100 chr15:30424219-30424319 1.0000 100 chr13:41719118-41719218 1.0000 100 chr13:59204482-59204582 1.0000 100 chr11:24481479-24481579 1.0000 100 chr15:32324050-32324150 1.0000 100 chr1:170504430-170504530 1.0000 100 chr13:59252501-59252601 1.0000 100 chr5:131430103-131430203 1.0000 100 chr2:98123353-98123453 1.0000 100 chr12:78788416-78788516 1.0000 100 chr5:149968559-149968659 1.0000 100 chr12:5177415-5177515 1.0000 100 chr5:42239847-42239947 1.0000 100 chr5:27077809-27077909 1.0000 100 chr18:71361719-71361819 1.0000 100 chr17:26442177-26442277 1.0000 100 chr6:99600645-99600745 1.0000 100 chr15:44064857-44064957 1.0000 100 chr6:102515282-102515382 1.0000 100 chr16:28631687-28631787 1.0000 100 chr12:27158583-27158683 1.0000 100 chr11:77316912-77317012 1.0000 100 chr12:5123223-5123323 1.0000 100 chr3:55872948-55873048 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.258 C 0.242 G 0.242 T 0.258 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.271 C 0.229 G 0.229 T 0.271 ******************************************************************************** ******************************************************************************** MOTIF RCCACYAGRKGGCRS MEME-1 width = 15 sites = 62 llr = 742 E-value = 2.9e-059 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCRS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 42:8:29:6:::261 pos.-specific C 28a:73::::::8:4 probability G 4::1211a45a9:44 matrix T 1::1:4:::5::::1 bits 2.1 1.9 * * * 1.7 * * ** 1.5 * ** *** Relative 1.3 ** ** *** Entropy 1.1 ** * *** **** (17.3 bits) 0.9 **** *** **** 0.6 **** ********* 0.4 **** ********* 0.2 *************** 0.0 --------------- Multilevel ACCACTAGAGGGCAC consensus G GC GT GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCRS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr3:59079248-59079348 + 16 1.16e-09 CATGGTATTC GCCACTAGAGGGCAG TATGGGCTTT chr5:14807075-14807175 - 57 9.01e-09 CACTTTAGCT GCCACTAGATGGCAG CGCTACGCTC chr12:10589600-10589700 - 40 9.01e-09 ATGGGAATTA GCCACTAGATGGCAG CATTTGCTAG chr17:66235031-66235131 + 68 1.86e-08 CCCCCCTCCG ACCACTAGATGGCGC CAAAAGCATG chr8:93591797-93591897 + 25 3.06e-08 TGCCGTCTTT ACCACTAGGTGGCAG TAGCCGTCAC chr13:91636759-91636859 - 58 3.06e-08 GGAACGTCCT ACCACTAGGTGGCAG TGCTCAGCCT chr17:26462560-26462660 + 49 4.61e-08 ACACCTTCAG CCCACCAGAGGGCGC TATAACACGG chr16:42164900-42165000 + 82 5.23e-08 ACCTAGTGTG ACCACAAGATGGCAG GACA chr8:124349681-124349781 - 52 6.00e-08 TCCCGGTCTG GCCAGCAGAGGGCAG CAGAACCTCA chr16:50736680-50736780 - 80 1.27e-07 CGCATG ACCAGCAGGGGGCAG TAGCACACTA chr15:58974268-58974368 + 61 1.27e-07 CCCAGGGATT ACCACGAGAGGGCGC TATTCTCACA chr7:92903568-92903668 - 64 1.53e-07 ATCTCCTCTC AACACCAGAGGGCAG CAAAGAGCTC chr3:65863233-65863333 - 64 1.53e-07 TCCTCACCTT TCCACTAGGGGGCAG ACAGAGGACG chr16:28793017-28793117 - 43 2.07e-07 TTCCCCAAGA GCCTCTAGGGGGCAG CAGAGTAGCA chr8:11923040-11923140 + 73 2.35e-07 GCAGGTGCCA GCCAGAAGATGGCAG CACCCTCAGA chr1:18106710-18106810 - 20 2.99e-07 AATCCAGCAG ACCACTAGATGGCAT ACTATACACA chr10:95475951-95476051 - 9 2.99e-07 TCTCGACGAA ACCGCCAGAGGGCAC TGTGACAC chr7:143153766-143153866 + 28 3.33e-07 GAGCTGTGGA GACACCAGGTGGCGC TCTTGTAACA chr13:37312506-37312606 - 33 3.68e-07 CCTCGATGAT ACCACCAGATGGCGA TGTTGGCCTA chr14:122060657-12206075 - 32 3.68e-07 CTCTGTTTCT GCCACCAGGGGGCAT AGGATGAACC chr2:61668202-61668302 + 50 5.52e-07 CCCACTGGAG GCCACTGGGGGGCAG TGTTTTCTCC chr13:110968034-11096813 - 73 6.11e-07 TGGAACTCTG TCCTCTAGAGGGCAG GAATGTACCA chr15:72516977-72517077 - 52 6.11e-07 TGACAGATCA CCCGCCAGAGGGCAC CCTTGCACCT chr6:67318455-67318555 - 53 6.11e-07 CTCGCCGCTG CCCACCAGAGGGCGT TCTATGCTCT chr17:84877775-84877875 + 13 6.76e-07 GACCACACTG CCCTCCAGGTGGCAG TAGAGAACCG chr1:89525817-89525917 + 37 6.76e-07 CTCATCAGCC ACCAGTAGATGGAGG GAGTGAGACA chr13:103564151-10356425 - 46 8.36e-07 GCACAGCTTC CCCAGAAGGTGGCAC ACCACCCTCT chr3:68646364-68646464 + 1 8.36e-07 . GACACCAGAGGGAAC CAAAGGCAGG chr5:131430103-131430203 - 36 9.34e-07 GCGTGCTGTG GACACCAGAGGGAGC CATGAGAACA chr2:122666226-122666326 + 9 9.34e-07 AAGTCCCA AACTCTAGAGGGCGC CACCTTCACG chr15:30424219-30424319 + 53 1.14e-06 TTCCGTTCGA ACCAACAGATGGCAC CAGTAGTTAA chr4:47598166-47598266 - 74 1.14e-06 ACCTCCCGTG CCCACAAGGGGGAAC CTGGAAAGAG chr4:125257821-125257921 - 82 1.25e-06 AGAG ACCAGAAGAGGGAGC TGAAGCCACC chr3:157876701-157876801 + 70 1.51e-06 TCCTTTAAGG ACCACTAGGTGTCGC TTTCTGCTGA chr19:30843242-30843342 + 57 1.51e-06 GCTTCATTTT ACCAATAGGTGGCAC CGTAGACAAC chr4:86810501-86810601 + 52 1.65e-06 cctgcgtcca aacactaggtggagc cagggaaatc chr2:52472921-52473021 - 50 1.65e-06 CTTCAGACAC ACCAGAAGAGGGCAT CAGATCCCCG chr12:50999565-50999665 - 40 1.81e-06 CGTCCTTCTC GCCACAAGGAGGCGC TCGCGGACAC chr18:77606402-77606502 - 52 1.81e-06 GTCACTGGTG CCCAGCAGAGGGCGA CTTTGCTCTT chr2:19715750-19715850 + 75 1.81e-06 ACTCTGGAGG GCCTGAAGGTGGCAG TAGAGGACAA chr4:85162676-85162776 + 62 1.98e-06 GACGCCAGTG AACACTGGAGGGCAG TAACACACAG chr1:78724440-78724540 + 2 1.98e-06 G TCCACTGGATGGCGG AGGAACCCCG chr16:77534983-77535083 + 36 1.98e-06 GTGCTGACTC ACCACTAGGGGGAGA ACATTGCTAG chr8:90000828-90000928 + 64 2.17e-06 CCCGCACATG GCCACCAGAGAGCAG CAGAGGACAT chr1:184235554-184235654 - 37 2.37e-06 TCTGTGACTG CACAGAAGAGGGCGC TCTTGTGCAG chr15:70920830-70920930 - 45 2.37e-06 TAGCAAAGAA GCCGCTAGGTGGAGG TGTTGCCTCA chr11:19830562-19830662 + 66 2.81e-06 CTCCATGCTG TCCACGAGAGGGAGC CAGCGCGCCT chr7:64950395-64950495 + 36 3.05e-06 CACACACCCT ACCCCAAGATGGCAG CAGAGAGCAG chr3:104675322-104675422 - 62 3.05e-06 GTGGCTATGG GCCACACGAGGGCGC CGCACACTGC chr4:14642231-14642331 - 29 3.31e-06 TGGCTACGTA GCCACTAGGTGACAC TGTTGCTTCA chr5:27089196-27089296 - 67 4.58e-06 TATGCTAGTA AGCAGTAGATGGCAC ACCCTCCATT chr16:90052805-90052905 + 16 5.36e-06 ATAGCACAGA TCCTGAAGGGGGCGG AATAAAGCCT chr2:102293188-102293288 - 55 5.36e-06 GTGTGCACTC AACACCAGAGGGAAA TATGTGCACA chr14:120835662-12083576 + 75 5.79e-06 ACTCAGCCTG CACAGCAGATGGAGC TAAGTCTCTA chr13:69460002-69460102 - 42 5.79e-06 TTCACCACTG GCCTCCAGGCGGCGC CATCGCCTCA chr9:97297475-97297575 + 21 6.77e-06 AGACTTAAGA GCCATGAGATGGCGC CATAGTTCCA chr16:12095356-12095456 - 7 6.77e-06 GGTCTGCTGT TCCACGAGAAGGCAG CACAGC chr12:35308504-35308604 + 23 8.52e-06 CTACTGAAGT GCCTGTAGATGTCAC TAAAGTAAAT chr5:44284339-44284439 + 46 1.06e-05 ACCAAGTGCC GCGTCTAGGTGGCGC CAGAACCCTT chr4:110050321-110050421 + 25 1.06e-05 GACTCATTTT GCCGGTAGAGGTCAG TCATGGCCAC chr3:149445227-149445327 + 13 2.08e-05 gagagaAACA GACACGAGATCGCAG AGCGTGGATA chr2:92055295-92055395 + 10 9.86e-05 GAAAAGATT CCCGCCGCGGGGCGG GGCAGGACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCRS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:59079248-59079348 1.2e-09 15_[+1]_70 chr5:14807075-14807175 9e-09 56_[-1]_29 chr12:10589600-10589700 9e-09 39_[-1]_46 chr17:66235031-66235131 1.9e-08 67_[+1]_18 chr8:93591797-93591897 3.1e-08 24_[+1]_61 chr13:91636759-91636859 3.1e-08 57_[-1]_28 chr17:26462560-26462660 4.6e-08 48_[+1]_37 chr16:42164900-42165000 5.2e-08 81_[+1]_4 chr8:124349681-124349781 6e-08 51_[-1]_34 chr16:50736680-50736780 1.3e-07 79_[-1]_6 chr15:58974268-58974368 1.3e-07 60_[+1]_25 chr7:92903568-92903668 1.5e-07 63_[-1]_22 chr3:65863233-65863333 1.5e-07 63_[-1]_22 chr16:28793017-28793117 2.1e-07 42_[-1]_43 chr8:11923040-11923140 2.4e-07 72_[+1]_13 chr1:18106710-18106810 3e-07 19_[-1]_66 chr10:95475951-95476051 3e-07 8_[-1]_77 chr7:143153766-143153866 3.3e-07 27_[+1]_58 chr13:37312506-37312606 3.7e-07 32_[-1]_53 chr14:122060657-12206075 3.7e-07 31_[-1]_54 chr2:61668202-61668302 5.5e-07 49_[+1]_36 chr13:110968034-11096813 6.1e-07 72_[-1]_13 chr15:72516977-72517077 6.1e-07 51_[-1]_34 chr6:67318455-67318555 6.1e-07 52_[-1]_33 chr17:84877775-84877875 6.8e-07 12_[+1]_73 chr1:89525817-89525917 6.8e-07 36_[+1]_49 chr13:103564151-10356425 8.4e-07 45_[-1]_40 chr3:68646364-68646464 8.4e-07 [+1]_85 chr5:131430103-131430203 9.3e-07 35_[-1]_50 chr2:122666226-122666326 9.3e-07 8_[+1]_77 chr15:30424219-30424319 1.1e-06 52_[+1]_33 chr4:47598166-47598266 1.1e-06 73_[-1]_12 chr4:125257821-125257921 1.2e-06 81_[-1]_4 chr3:157876701-157876801 1.5e-06 69_[+1]_16 chr19:30843242-30843342 1.5e-06 56_[+1]_29 chr4:86810501-86810601 1.6e-06 51_[+1]_34 chr2:52472921-52473021 1.6e-06 49_[-1]_36 chr12:50999565-50999665 1.8e-06 39_[-1]_46 chr18:77606402-77606502 1.8e-06 51_[-1]_34 chr2:19715750-19715850 1.8e-06 74_[+1]_11 chr4:85162676-85162776 2e-06 61_[+1]_24 chr1:78724440-78724540 2e-06 1_[+1]_84 chr16:77534983-77535083 2e-06 35_[+1]_50 chr8:90000828-90000928 2.2e-06 63_[+1]_22 chr1:184235554-184235654 2.4e-06 36_[-1]_49 chr15:70920830-70920930 2.4e-06 44_[-1]_41 chr11:19830562-19830662 2.8e-06 65_[+1]_20 chr7:64950395-64950495 3e-06 35_[+1]_50 chr3:104675322-104675422 3e-06 61_[-1]_24 chr4:14642231-14642331 3.3e-06 28_[-1]_57 chr5:27089196-27089296 4.6e-06 66_[-1]_19 chr16:90052805-90052905 5.4e-06 15_[+1]_70 chr2:102293188-102293288 5.4e-06 54_[-1]_31 chr14:120835662-12083576 5.8e-06 74_[+1]_11 chr13:69460002-69460102 5.8e-06 41_[-1]_44 chr9:97297475-97297575 6.8e-06 20_[+1]_65 chr16:12095356-12095456 6.8e-06 6_[-1]_79 chr12:35308504-35308604 8.5e-06 22_[+1]_63 chr5:44284339-44284439 1.1e-05 45_[+1]_40 chr4:110050321-110050421 1.1e-05 24_[+1]_61 chr3:149445227-149445327 2.1e-05 12_[+1]_73 chr2:92055295-92055395 9.9e-05 9_[+1]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCRS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCCACYAGRKGGCRS width=15 seqs=62 chr3:59079248-59079348 ( 16) GCCACTAGAGGGCAG 1 chr5:14807075-14807175 ( 57) GCCACTAGATGGCAG 1 chr12:10589600-10589700 ( 40) GCCACTAGATGGCAG 1 chr17:66235031-66235131 ( 68) ACCACTAGATGGCGC 1 chr8:93591797-93591897 ( 25) ACCACTAGGTGGCAG 1 chr13:91636759-91636859 ( 58) ACCACTAGGTGGCAG 1 chr17:26462560-26462660 ( 49) CCCACCAGAGGGCGC 1 chr16:42164900-42165000 ( 82) ACCACAAGATGGCAG 1 chr8:124349681-124349781 ( 52) GCCAGCAGAGGGCAG 1 chr16:50736680-50736780 ( 80) ACCAGCAGGGGGCAG 1 chr15:58974268-58974368 ( 61) ACCACGAGAGGGCGC 1 chr7:92903568-92903668 ( 64) AACACCAGAGGGCAG 1 chr3:65863233-65863333 ( 64) TCCACTAGGGGGCAG 1 chr16:28793017-28793117 ( 43) GCCTCTAGGGGGCAG 1 chr8:11923040-11923140 ( 73) GCCAGAAGATGGCAG 1 chr1:18106710-18106810 ( 20) ACCACTAGATGGCAT 1 chr10:95475951-95476051 ( 9) ACCGCCAGAGGGCAC 1 chr7:143153766-143153866 ( 28) GACACCAGGTGGCGC 1 chr13:37312506-37312606 ( 33) ACCACCAGATGGCGA 1 chr14:122060657-12206075 ( 32) GCCACCAGGGGGCAT 1 chr2:61668202-61668302 ( 50) GCCACTGGGGGGCAG 1 chr13:110968034-11096813 ( 73) TCCTCTAGAGGGCAG 1 chr15:72516977-72517077 ( 52) CCCGCCAGAGGGCAC 1 chr6:67318455-67318555 ( 53) CCCACCAGAGGGCGT 1 chr17:84877775-84877875 ( 13) CCCTCCAGGTGGCAG 1 chr1:89525817-89525917 ( 37) ACCAGTAGATGGAGG 1 chr13:103564151-10356425 ( 46) CCCAGAAGGTGGCAC 1 chr3:68646364-68646464 ( 1) GACACCAGAGGGAAC 1 chr5:131430103-131430203 ( 36) GACACCAGAGGGAGC 1 chr2:122666226-122666326 ( 9) AACTCTAGAGGGCGC 1 chr15:30424219-30424319 ( 53) ACCAACAGATGGCAC 1 chr4:47598166-47598266 ( 74) CCCACAAGGGGGAAC 1 chr4:125257821-125257921 ( 82) ACCAGAAGAGGGAGC 1 chr3:157876701-157876801 ( 70) ACCACTAGGTGTCGC 1 chr19:30843242-30843342 ( 57) ACCAATAGGTGGCAC 1 chr4:86810501-86810601 ( 52) AACACTAGGTGGAGC 1 chr2:52472921-52473021 ( 50) ACCAGAAGAGGGCAT 1 chr12:50999565-50999665 ( 40) GCCACAAGGAGGCGC 1 chr18:77606402-77606502 ( 52) CCCAGCAGAGGGCGA 1 chr2:19715750-19715850 ( 75) GCCTGAAGGTGGCAG 1 chr4:85162676-85162776 ( 62) AACACTGGAGGGCAG 1 chr1:78724440-78724540 ( 2) TCCACTGGATGGCGG 1 chr16:77534983-77535083 ( 36) ACCACTAGGGGGAGA 1 chr8:90000828-90000928 ( 64) GCCACCAGAGAGCAG 1 chr1:184235554-184235654 ( 37) CACAGAAGAGGGCGC 1 chr15:70920830-70920930 ( 45) GCCGCTAGGTGGAGG 1 chr11:19830562-19830662 ( 66) TCCACGAGAGGGAGC 1 chr7:64950395-64950495 ( 36) ACCCCAAGATGGCAG 1 chr3:104675322-104675422 ( 62) GCCACACGAGGGCGC 1 chr4:14642231-14642331 ( 29) GCCACTAGGTGACAC 1 chr5:27089196-27089296 ( 67) AGCAGTAGATGGCAC 1 chr16:90052805-90052905 ( 16) TCCTGAAGGGGGCGG 1 chr2:102293188-102293288 ( 55) AACACCAGAGGGAAA 1 chr14:120835662-12083576 ( 75) CACAGCAGATGGAGC 1 chr13:69460002-69460102 ( 42) GCCTCCAGGCGGCGC 1 chr9:97297475-97297575 ( 21) GCCATGAGATGGCGC 1 chr16:12095356-12095456 ( 7) TCCACGAGAAGGCAG 1 chr12:35308504-35308604 ( 23) GCCTGTAGATGTCAC 1 chr5:44284339-44284439 ( 46) GCGTCTAGGTGGCGC 1 chr4:110050321-110050421 ( 25) GCCGGTAGAGGTCAG 1 chr3:149445227-149445327 ( 13) GACACGAGATCGCAG 1 chr2:92055295-92055395 ( 10) CCCGCCGCGGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCRS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 10.999 E= 2.9e-059 45 -51 70 -148 -61 182 -383 -1260 -1260 210 -383 -1260 148 -383 -151 -90 -307 163 8 -407 -48 49 -151 57 176 -383 -183 -1260 -1260 -383 210 -1260 122 -1260 70 -1260 -307 -383 113 74 -407 -383 208 -1260 -407 -1260 203 -248 -61 184 -1260 -1260 110 -1260 87 -1260 -207 93 93 -207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCRS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 62 E= 2.9e-059 0.370968 0.161290 0.370968 0.096774 0.177419 0.806452 0.016129 0.000000 0.000000 0.983871 0.016129 0.000000 0.758065 0.016129 0.080645 0.145161 0.032258 0.709677 0.241935 0.016129 0.193548 0.322581 0.080645 0.403226 0.919355 0.016129 0.064516 0.000000 0.000000 0.016129 0.983871 0.000000 0.629032 0.000000 0.370968 0.000000 0.032258 0.016129 0.500000 0.451613 0.016129 0.016129 0.967742 0.000000 0.016129 0.000000 0.935484 0.048387 0.177419 0.822581 0.000000 0.000000 0.580645 0.000000 0.419355 0.000000 0.064516 0.435484 0.435484 0.064516 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACYAGRKGGCRS MEME-1 regular expression -------------------------------------------------------------------------------- [AG]CCA[CG][TC]AG[AG][GT]GGC[AG][CG] -------------------------------------------------------------------------------- Time 519.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGSRDGDGSGGGDGGGRGGGRGKGDRGA MEME-2 width = 29 sites = 36 llr = 541 E-value = 6.2e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGSRDGDGSGGGDGGGRGGGRGKGDRGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 12114313:22::3:1:42::43123426 pos.-specific C 21:31121:4::1:1111:12111:1:22 probability G 56953463946884988387857683661 matrix T 22:123:31:1213::11:21::3:3::1 bits 2.1 1.9 1.7 * 1.5 * * * Relative 1.3 * * * ** * Entropy 1.1 * * ** *** * * * * (21.7 bits) 0.9 * * ** *** ***** * ** 0.6 * * * *** *** ***** * ** 0.4 *** * ***** *** ******* ** 0.2 ************************* *** 0.0 ----------------------------- Multilevel GGGGAGGAGGGGGGGGGAGGGGGGGGGGA consensus CGACT C T GA AAT TA sequence T G A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSRDGDGSGGGDGGGRGGGRGKGDRGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr14:100749999-10075009 + 8 5.94e-12 ACAGCAC GGGGTGGGGAGGGTGGGGGGTGGGGTGGA AAAAGGGGCG chr19:45326440-45326540 - 34 5.94e-12 GATCAGAGCC AGGGAGCTGGGGGGGGGGGGGGGTGGAGT TTCTCACCCT chr7:101739550-101739650 + 55 4.35e-11 CAGCTGTCCT TGGCAAGAGGGGGAGGGAAGGGGAGGGGA CTCAAGGCTC chr14:120299384-12029948 - 56 5.03e-11 TAATAAAAAG GAGGGAGGGAGGGAGGGAGGGAGGAAAGA GAGAGAGAAA chr12:83169689-83169789 - 67 5.80e-11 CCAGC TGGCATGATGGGGGGGGAGGGGGGAGAGA GCCAGAGGGA chr1:15483480-15483580 + 11 5.80e-11 GGTTAAGGAG ATGGAGGTGGGGGAGGGAGGCAGGGTGGT TGAAGGGAAA chr1:42773881-42773981 - 39 1.16e-10 AGACTGTTGG GTGGAGGTGGGGGTGGGGGCGGGGAGGAA GAGCTCTTTG chr9:113633009-113633109 - 18 1.33e-10 AGGAGGGAGA GAGGAAAGGAGGGAGGGAGGGAGGGAGGG AGGTGCCAGC chr8:84494776-84494876 - 52 6.29e-10 CACACACAGG TGGGAGGAGGGTGGAGGGAGGAGGGAGGA GTTGGATCGT chr5:149861455-149861555 - 21 5.08e-09 ATGTTGGGGA GGGGTGGAGAAGATGGGAGTGGGGGTAGC TAGCAGGGAG chr19:45295431-45295531 + 17 5.08e-09 GCCTGTCTGC CTGCTGGGGGTGGGGGGTAGGGATGGGGA TGGCAGAGGA chr8:34210390-34210490 - 10 5.08e-09 TTGAAAGCTT AGGGTGATGGGGGAGGCAGGGGAGGTGAG TCATAATTC chr18:60142478-60142578 + 69 5.66e-09 ATAAAGGATT TGGGTGGTGGGGGGCGGGGGGGATATAAA AAA chr18:75554558-75554658 + 28 7.80e-09 GAGCCCGCCT GGGGGTGGGCGTGCGGGGAGGAGGAGACA TCCTAAAAAT chr13:25128927-25129027 - 38 8.67e-09 GAAAGAGAGA AGGGGAAAGGGGGAGACAGGGAAGGAGGA AAGAGGGACA chr7:3460298-3460398 - 12 1.07e-08 CAAGTTTCCT CGGGAGCAGCAGGTGGTGAGGGAGGCGCA TCCGCAGCTC chr18:62267212-62267312 - 55 1.46e-08 TGCAGGCAGG AGAGAGCTGCGTGTGGGTGGGAGGAGAGA AGAGAGCTGG chr4:131381014-131381114 - 13 1.78e-08 AACCGTGTGA GGGAACGAGGGGGAGAGAGGGAGAGAGGG AGGTGTGGAG chr3:159030585-159030685 + 42 1.78e-08 AGCCTCAGCT GTGCATGTGCTTGTGGGGGTGGAGAGAGA AAGAAGTGAT chr1:120689027-120689127 + 60 5.19e-08 TAAGTGAAAG TGATGGCTGGAGTGGGGAGGGAGGGTAGA GGCCAAACTG chr16:92738222-92738322 - 21 5.70e-08 CACAGGAGCA GGGCGTGGGCGTGGGGGGATGATCGTGGC AGCCTGTGGC chrX:73561846-73561946 - 12 6.86e-08 CAGGCACTCT TGGGATCCGAAGGTGGGAAGGAAGGGAAC AGATGGCCAT chr15:74325339-74325439 - 53 1.29e-07 TGGAACACAG CAGCAAGGGGTGGGGCGGGGTAATGAGGC CTGTGCCTGG chr19:5798667-5798767 - 58 2.36e-07 TGAGATGAGT GGGATCGAGCGGCTGCGAGGCGGTGCAGT GTGCCAATGT chr4:125824477-125824577 + 70 2.36e-07 GAGCAGCTGT CGGCATGTGCTGGTGGCCAGGACCGCGGA GA chr10:122931068-12293116 - 2 3.88e-07 CTGAAAACCT GCAAGTGATAAGGAGGGGGTGGGGGAGGA G chr6:28596818-28596918 - 38 7.91e-07 GTGTGTGCGT GTGCGTGTGCGTGTGCGTGTGCGTGTGCG TGTGTGTGTG chr1:70894877-70894977 + 67 9.95e-07 TGTTGTGTGT GAGTGTGTGTGGGGGGTTGTGCGTGTGGA AATAT chr1:87002429-87002529 - 66 1.16e-06 ACAACT GGGCTCATTGCGGGGGCGGGGGGTGTACT CTTGTAACGG chr9:34715184-34715284 - 57 1.34e-06 CACAGCAGGA GAGGCAGATGTGTGGGGCGGGAATGTGCT GCAAACAAAC chr11:43634047-43634147 - 36 1.67e-06 GAAAGCAAAC CAGGCACCGCGGCAGCTAGGCGGGGAGAA GCTCAGACTT chr13:56112922-56113022 + 61 2.07e-06 GCTCACACAG GCGGCACGGCAGTGGGGAGCCAGGGAAAC CTGGGAAGAC chr13:43592331-43592431 + 67 2.07e-06 GCCCTTCAGA CGGCGGCGGCGGCAGGCAGAAGGTGGACA GGGGA chr12:17881580-17881680 - 58 2.75e-06 ACTTAGGAGA GGGAAGTAGAAGGGCGGACGCGGCGGGGC ACAAGCCTGG chr13:51202718-51202818 - 17 8.98e-06 CAAGGGCAAC TACGCGGAGCGTGTGGGCGCCGGCGCGCC GGTATACATG chr5:151368356-151368456 - 41 9.56e-06 CGGAACCGGA CTGCGAACGCGGGGCCTCGTGGCGGAAGA GCCAGGAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSRDGDGSGGGDGGGRGGGRGKGDRGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:100749999-10075009 5.9e-12 7_[+2]_64 chr19:45326440-45326540 5.9e-12 33_[-2]_38 chr7:101739550-101739650 4.4e-11 54_[+2]_17 chr14:120299384-12029948 5e-11 55_[-2]_16 chr12:83169689-83169789 5.8e-11 66_[-2]_5 chr1:15483480-15483580 5.8e-11 10_[+2]_61 chr1:42773881-42773981 1.2e-10 38_[-2]_33 chr9:113633009-113633109 1.3e-10 17_[-2]_54 chr8:84494776-84494876 6.3e-10 51_[-2]_20 chr5:149861455-149861555 5.1e-09 20_[-2]_51 chr19:45295431-45295531 5.1e-09 16_[+2]_55 chr8:34210390-34210490 5.1e-09 9_[-2]_62 chr18:60142478-60142578 5.7e-09 68_[+2]_3 chr18:75554558-75554658 7.8e-09 27_[+2]_44 chr13:25128927-25129027 8.7e-09 37_[-2]_34 chr7:3460298-3460398 1.1e-08 11_[-2]_60 chr18:62267212-62267312 1.5e-08 54_[-2]_17 chr4:131381014-131381114 1.8e-08 12_[-2]_59 chr3:159030585-159030685 1.8e-08 41_[+2]_30 chr1:120689027-120689127 5.2e-08 59_[+2]_12 chr16:92738222-92738322 5.7e-08 20_[-2]_51 chrX:73561846-73561946 6.9e-08 11_[-2]_60 chr15:74325339-74325439 1.3e-07 52_[-2]_19 chr19:5798667-5798767 2.4e-07 57_[-2]_14 chr4:125824477-125824577 2.4e-07 69_[+2]_2 chr10:122931068-12293116 3.9e-07 1_[-2]_70 chr6:28596818-28596918 7.9e-07 37_[-2]_34 chr1:70894877-70894977 9.9e-07 66_[+2]_5 chr1:87002429-87002529 1.2e-06 65_[-2]_6 chr9:34715184-34715284 1.3e-06 56_[-2]_15 chr11:43634047-43634147 1.7e-06 35_[-2]_36 chr13:56112922-56113022 2.1e-06 60_[+2]_11 chr13:43592331-43592431 2.1e-06 66_[+2]_5 chr12:17881580-17881680 2.7e-06 57_[-2]_14 chr13:51202718-51202818 9e-06 16_[-2]_55 chr5:151368356-151368456 9.6e-06 40_[-2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSRDGDGSGGGDGGGRGGGRGKGDRGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGSRDGDGSGGGDGGGRGGGRGKGDRGA width=29 seqs=36 chr14:100749999-10075009 ( 8) GGGGTGGGGAGGGTGGGGGGTGGGGTGGA 1 chr19:45326440-45326540 ( 34) AGGGAGCTGGGGGGGGGGGGGGGTGGAGT 1 chr7:101739550-101739650 ( 55) TGGCAAGAGGGGGAGGGAAGGGGAGGGGA 1 chr14:120299384-12029948 ( 56) GAGGGAGGGAGGGAGGGAGGGAGGAAAGA 1 chr12:83169689-83169789 ( 67) TGGCATGATGGGGGGGGAGGGGGGAGAGA 1 chr1:15483480-15483580 ( 11) ATGGAGGTGGGGGAGGGAGGCAGGGTGGT 1 chr1:42773881-42773981 ( 39) GTGGAGGTGGGGGTGGGGGCGGGGAGGAA 1 chr9:113633009-113633109 ( 18) GAGGAAAGGAGGGAGGGAGGGAGGGAGGG 1 chr8:84494776-84494876 ( 52) TGGGAGGAGGGTGGAGGGAGGAGGGAGGA 1 chr5:149861455-149861555 ( 21) GGGGTGGAGAAGATGGGAGTGGGGGTAGC 1 chr19:45295431-45295531 ( 17) CTGCTGGGGGTGGGGGGTAGGGATGGGGA 1 chr8:34210390-34210490 ( 10) AGGGTGATGGGGGAGGCAGGGGAGGTGAG 1 chr18:60142478-60142578 ( 69) TGGGTGGTGGGGGGCGGGGGGGATATAAA 1 chr18:75554558-75554658 ( 28) GGGGGTGGGCGTGCGGGGAGGAGGAGACA 1 chr13:25128927-25129027 ( 38) AGGGGAAAGGGGGAGACAGGGAAGGAGGA 1 chr7:3460298-3460398 ( 12) CGGGAGCAGCAGGTGGTGAGGGAGGCGCA 1 chr18:62267212-62267312 ( 55) AGAGAGCTGCGTGTGGGTGGGAGGAGAGA 1 chr4:131381014-131381114 ( 13) GGGAACGAGGGGGAGAGAGGGAGAGAGGG 1 chr3:159030585-159030685 ( 42) GTGCATGTGCTTGTGGGGGTGGAGAGAGA 1 chr1:120689027-120689127 ( 60) TGATGGCTGGAGTGGGGAGGGAGGGTAGA 1 chr16:92738222-92738322 ( 21) GGGCGTGGGCGTGGGGGGATGATCGTGGC 1 chrX:73561846-73561946 ( 12) TGGGATCCGAAGGTGGGAAGGAAGGGAAC 1 chr15:74325339-74325439 ( 53) CAGCAAGGGGTGGGGCGGGGTAATGAGGC 1 chr19:5798667-5798767 ( 58) GGGATCGAGCGGCTGCGAGGCGGTGCAGT 1 chr4:125824477-125824577 ( 70) CGGCATGTGCTGGTGGCCAGGACCGCGGA 1 chr10:122931068-12293116 ( 2) GCAAGTGATAAGGAGGGGGTGGGGGAGGA 1 chr6:28596818-28596918 ( 38) GTGCGTGTGCGTGTGCGTGTGCGTGTGCG 1 chr1:70894877-70894977 ( 67) GAGTGTGTGTGGGGGGTTGTGCGTGTGGA 1 chr1:87002429-87002529 ( 66) GGGCTCATTGCGGGGGCGGGGGGTGTACT 1 chr9:34715184-34715284 ( 57) GAGGCAGATGTGTGGGGCGGGAATGTGCT 1 chr11:43634047-43634147 ( 36) CAGGCACCGCGGCAGCTAGGCGGGGAGAA 1 chr13:56112922-56113022 ( 61) GCGGCACGGCAGTGGGGAGCCAGGGAAAC 1 chr13:43592331-43592431 ( 67) CGGCGGCGGCGGCAGGCAGAAGGTGGACA 1 chr12:17881580-17881680 ( 58) GGGAAGTAGAAGGGCGGACGCGGCGGGGC 1 chr13:51202718-51202818 ( 17) TACGCGGAGCGTGTGGGCGCCGGCGCGCC 1 chr5:151368356-151368456 ( 41) CTGCGAACGCGGGGCCTCGTGGCGGAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSRDGDGSGGGDGGGRGGGRGKGDRGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.6328 E= 6.2e-035 -96 -24 104 -48 -48 -204 135 -70 -170 -304 196 -1181 -129 42 120 -228 62 -104 28 -48 -12 -146 86 -12 -96 -4 142 -328 30 -146 13 30 -1181 -1181 196 -129 -48 66 86 -328 -48 -304 148 -96 -1181 -1181 181 -48 -328 -146 181 -170 4 -304 76 17 -328 -146 196 -1181 -228 -72 181 -1181 -1181 -72 171 -129 71 -104 54 -129 -29 -304 171 -1181 -328 -146 160 -48 -328 -46 171 -228 62 -204 120 -1181 -12 -204 154 -328 -228 -104 128 4 -48 -1181 181 -1181 4 -104 42 17 62 -1181 135 -1181 -70 -24 148 -1181 104 -24 -104 -96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSRDGDGSGGGDGGGRGGGRGKGDRGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 36 E= 6.2e-035 0.138889 0.194444 0.472222 0.194444 0.194444 0.055556 0.583333 0.166667 0.083333 0.027778 0.888889 0.000000 0.111111 0.305556 0.527778 0.055556 0.416667 0.111111 0.277778 0.194444 0.250000 0.083333 0.416667 0.250000 0.138889 0.222222 0.611111 0.027778 0.333333 0.083333 0.250000 0.333333 0.000000 0.000000 0.888889 0.111111 0.194444 0.361111 0.416667 0.027778 0.194444 0.027778 0.638889 0.138889 0.000000 0.000000 0.805556 0.194444 0.027778 0.083333 0.805556 0.083333 0.277778 0.027778 0.388889 0.305556 0.027778 0.083333 0.888889 0.000000 0.055556 0.138889 0.805556 0.000000 0.000000 0.138889 0.750000 0.111111 0.444444 0.111111 0.333333 0.111111 0.222222 0.027778 0.750000 0.000000 0.027778 0.083333 0.694444 0.194444 0.027778 0.166667 0.750000 0.055556 0.416667 0.055556 0.527778 0.000000 0.250000 0.055556 0.666667 0.027778 0.055556 0.111111 0.555556 0.277778 0.194444 0.000000 0.805556 0.000000 0.277778 0.111111 0.305556 0.305556 0.416667 0.000000 0.583333 0.000000 0.166667 0.194444 0.638889 0.000000 0.555556 0.194444 0.111111 0.138889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSRDGDGSGGGDGGGRGGGRGKGDRGA MEME-2 regular expression -------------------------------------------------------------------------------- GGG[GC][AG][GAT][GC][ATG]G[GC]GGG[GTA]GGG[AG][GA]GG[GA][GA][GT]G[GTA][GA]GA -------------------------------------------------------------------------------- Time 998.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GVGRRAGRRARAGRRAGRSAGRAMGDGAG MEME-3 width = 29 sites = 38 llr = 501 E-value = 4.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVGRRAGRRARAGRRAGRSAGRAMGDGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 13135714463516572529136533171 pos.-specific C 1311:112112:21212231:1:31132: probability G 83854:7442426331735:863263618 matrix T :1:1:2211::2:::2::::1:1:13::1 bits 2.1 1.9 1.7 1.5 Relative 1.3 * * Entropy 1.1 * * ** * (19.0 bits) 0.9 * * ** * ** *** 0.6 * * *** * ** ** **** * *** 0.4 * ***** **************** *** 0.2 * *************************** 0.0 ----------------------------- Multilevel GAGGAAGAAAGAGAAAGAGAGGAAGTGAG consensus C AG GGGAGCGG GC AGCAGC sequence G CT C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGRRAGRRARAGRRAGRSAGRAMGDGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr19:47276770-47276870 + 21 2.24e-13 gtCTAAGGCT GGGGGAGGAAAAGAAAGACAGGAAATGAG GATCAACACA chr14:120299384-12029948 - 15 1.70e-12 GAGAGAAAGA GAGAGAGAGAGAGACAGAGAGAGAGAGAG AGAACGTGTG chr15:95193379-95193479 + 1 4.16e-11 . gagagagagagagagagagagagagagaA TTGTCTTCCC chr13:107209822-10720992 + 3 5.82e-11 ga gagagagagagagagagagaggagaTGAA GGGGATGCtg chr9:113633009-113633109 - 48 2.34e-09 GAGGCTTATC ATGGAAGAGAGAGGAAGGGAAGGAGGGAG AGAGGAAAGG chr13:91502122-91502222 - 59 3.04e-09 GCAAGAAAAA GGGGAAGGGAAGGAAAGAAAGGGACAGAA GAATAAGGAA chr3:85210493-85210593 - 2 3.04e-09 AGGGAACAGC GTGGGATGAAAGAGAAGACAGGAAAGGAG C chr3:17064811-17064911 + 15 3.04e-09 CAGGTGTGTG GTGGGAAAAGGAGACTGAGAGAAAGTGAG AGCAAGAGGG chr4:125462080-125462180 + 8 4.46e-09 ACAGAAA GGGGGAGGAGGTGAATCAGAGAACAGGCG AATACATTTA chr1:160548181-160548281 + 4 1.90e-08 GAA GCATAAGGAACAGGAACAGAGAACAGGAG TCAGCGCCAG chr13:25128927-25129027 - 68 2.39e-08 GAAA GGGAAAGAGAAGAAAGGCAAGAAAGAGAG AAGGGGAAAG chr3:127059659-127059759 + 69 2.67e-08 TTCGCAACAA GAGACAGGGAAACACTGAGAGCAAAGGAG CAT chr4:125261345-125261445 - 69 3.73e-08 GGA GAGAAACAGAGAGACTGAGAGGGCGGCCA CTGAGGGGAA chr2:169792481-169792581 + 42 4.64e-08 tgaaagagag ggagatgagacagggagaaaggtcaggag acacaaagga chr14:84539508-84539608 - 59 5.17e-08 TGGAAAAAAT GGGGATGAGAATGAAAGGAAGAAGGTAAT GTAAAGACAT chr6:102515282-102515382 - 7 1.08e-07 GGGGTGACTT GCGGATTGTACAGAAACACATAGAGTGAG CCCAGC chrX:167099336-167099436 + 68 1.08e-07 GGCACTCCAG AGGGGAGCAGCTGGCAGGCAGGAATTCAG GTTT chr9:48648079-48648179 - 6 1.19e-07 TGCTGAATAC ATGGAAGGAAAATAGAGGGAAGAAGAGAG GCAAT chr9:115143039-115143139 - 31 1.96e-07 ATGAGGTAAG ATGGAAGCAGAGGGCAGACAGGAAGTAGG GCAGACTGTG chr7:125407712-125407812 + 64 2.16e-07 GGGCTGGAAG GAACAATATACAGAGAGCCAGGAGATGAG GTACCCCA chr17:44134961-44135061 + 71 2.38e-07 GGAACCTCAG GAGAATGGAGGAGCAACCGAGGAAGACGT G chr10:89194342-89194442 + 13 3.17e-07 GGAAGAGGCT GAGaaaaaaaaaaaaaaaaagaaagaaag aaaTGCCTTG chr5:66376917-66377017 + 37 3.48e-07 GCTGAGCCAG AGGAAAGAGAGGGCCTGGAATCAAGAGAG ATAGGCTGTC chr14:37296623-37296723 - 57 4.60e-07 GCTAAGGCTG GAATGATGAAAACAGCCAAAGGAAGAGAG TATGGAAATT chr19:32102291-32102391 - 53 5.04e-07 CTATAATTCA TCGGAAGCCCGAGGGAGGGAGGGAGGCAT CATCTAAGAC chr6:76382261-76382361 + 26 6.04e-07 TGATGCTAAG GAAAGCTGAAGAGAGAGGGAGCACATCGG TGCACCCCAG chr2:169509960-169510060 + 9 1.32e-06 TAGCAACA CAGAGAGAAAGGGAAAACGCTGACGAGAT CAGATCTTAC chr10:99309988-99310088 - 16 2.17e-06 TCTCTCTGCT GAGGAACGCAGCCGAAGGGCGAGGGGGAA AGGATTTTCC chr1:39453714-39453814 + 17 2.98e-06 GCTATCTGCT GCGCGCGATACTGGATGGCATGGCAGCAG GTGGGGCAGC chr3:65863233-65863333 - 29 3.76e-06 GCAGACAGAG GACGGAGAACATCCCAGGCAGGAGGCCGG TCCCTCACAA chr18:33794629-33794729 - 51 5.90e-06 GCTCCGCGCT GCGTGCGAGCATAGAAAGGAGGAACTGCG CTCCCACAAT chr17:84877775-84877875 - 54 9.10e-06 TAAAAATGAC CCGGAACCGGGTAAACAAGATGACGTCAG TGTGCTGGGC chr2:34646184-34646284 + 53 1.80e-05 aggccagccc gggaaaggcgcgccaccccaggtgggcgg gtctctctgc chr16:50732538-50732638 - 16 1.92e-05 CTTAAGGTAG GCGGGACGTGGACCGGCACCGCGCGTGCG TAGAGCTGTC chr18:36150522-36150622 + 17 2.05e-05 TGGGTATGCA GCCCGTTCCCAGGAAAACGAGCACGAGAG CTTGGCTTAG chr2:57181843-57181943 + 35 2.48e-05 TTAGCGGCTG ggggatgtagctcagtggtagagcgcgcg cttcgcatgt chr8:90000828-90000928 - 30 6.44e-05 GTGGCCATGT GCGGGAGTTAGGCGTAAAGCGGTCTTAAG TTCGTCTTCC chr2:92055295-92055395 + 40 1.74e-04 GACACAGCCG GCGCATGCGCGTCAGCGGCCCGAGTGCCG CACCACAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGRRAGRRARAGRRAGRSAGRAMGDGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:47276770-47276870 2.2e-13 20_[+3]_51 chr14:120299384-12029948 1.7e-12 14_[-3]_57 chr15:95193379-95193479 4.2e-11 [+3]_71 chr13:107209822-10720992 5.8e-11 2_[+3]_69 chr9:113633009-113633109 2.3e-09 47_[-3]_24 chr13:91502122-91502222 3e-09 58_[-3]_13 chr3:85210493-85210593 3e-09 1_[-3]_70 chr3:17064811-17064911 3e-09 14_[+3]_57 chr4:125462080-125462180 4.5e-09 7_[+3]_64 chr1:160548181-160548281 1.9e-08 3_[+3]_68 chr13:25128927-25129027 2.4e-08 67_[-3]_4 chr3:127059659-127059759 2.7e-08 68_[+3]_3 chr4:125261345-125261445 3.7e-08 68_[-3]_3 chr2:169792481-169792581 4.6e-08 41_[+3]_30 chr14:84539508-84539608 5.2e-08 58_[-3]_13 chr6:102515282-102515382 1.1e-07 6_[-3]_65 chrX:167099336-167099436 1.1e-07 67_[+3]_4 chr9:48648079-48648179 1.2e-07 5_[-3]_66 chr9:115143039-115143139 2e-07 30_[-3]_41 chr7:125407712-125407812 2.2e-07 63_[+3]_8 chr17:44134961-44135061 2.4e-07 70_[+3]_1 chr10:89194342-89194442 3.2e-07 12_[+3]_59 chr5:66376917-66377017 3.5e-07 36_[+3]_35 chr14:37296623-37296723 4.6e-07 56_[-3]_15 chr19:32102291-32102391 5e-07 52_[-3]_19 chr6:76382261-76382361 6e-07 25_[+3]_46 chr2:169509960-169510060 1.3e-06 8_[+3]_63 chr10:99309988-99310088 2.2e-06 15_[-3]_56 chr1:39453714-39453814 3e-06 16_[+3]_55 chr3:65863233-65863333 3.8e-06 28_[-3]_43 chr18:33794629-33794729 5.9e-06 50_[-3]_21 chr17:84877775-84877875 9.1e-06 53_[-3]_18 chr2:34646184-34646284 1.8e-05 52_[+3]_19 chr16:50732538-50732638 1.9e-05 15_[-3]_56 chr18:36150522-36150622 2e-05 16_[+3]_55 chr2:57181843-57181943 2.5e-05 34_[+3]_37 chr8:90000828-90000928 6.4e-05 29_[-3]_42 chr2:92055295-92055395 0.00017 39_[+3]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGRRAGRRARAGRRAGRSAGRAMGDGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVGRRAGRRARAGRRAGRSAGRAMGDGAG width=29 seqs=38 chr19:47276770-47276870 ( 21) GGGGGAGGAAAAGAAAGACAGGAAATGAG 1 chr14:120299384-12029948 ( 15) GAGAGAGAGAGAGACAGAGAGAGAGAGAG 1 chr15:95193379-95193479 ( 1) GAGAGAGAGAGAGAGAGAGAGAGAGAGAA 1 chr13:107209822-10720992 ( 3) GAGAGAGAGAGAGAGAGAGAGGAGATGAA 1 chr9:113633009-113633109 ( 48) ATGGAAGAGAGAGGAAGGGAAGGAGGGAG 1 chr13:91502122-91502222 ( 59) GGGGAAGGGAAGGAAAGAAAGGGACAGAA 1 chr3:85210493-85210593 ( 2) GTGGGATGAAAGAGAAGACAGGAAAGGAG 1 chr3:17064811-17064911 ( 15) GTGGGAAAAGGAGACTGAGAGAAAGTGAG 1 chr4:125462080-125462180 ( 8) GGGGGAGGAGGTGAATCAGAGAACAGGCG 1 chr1:160548181-160548281 ( 4) GCATAAGGAACAGGAACAGAGAACAGGAG 1 chr13:25128927-25129027 ( 68) GGGAAAGAGAAGAAAGGCAAGAAAGAGAG 1 chr3:127059659-127059759 ( 69) GAGACAGGGAAACACTGAGAGCAAAGGAG 1 chr4:125261345-125261445 ( 69) GAGAAACAGAGAGACTGAGAGGGCGGCCA 1 chr2:169792481-169792581 ( 42) GGAGATGAGACAGGGAGAAAGGTCAGGAG 1 chr14:84539508-84539608 ( 59) GGGGATGAGAATGAAAGGAAGAAGGTAAT 1 chr6:102515282-102515382 ( 7) GCGGATTGTACAGAAACACATAGAGTGAG 1 chrX:167099336-167099436 ( 68) AGGGGAGCAGCTGGCAGGCAGGAATTCAG 1 chr9:48648079-48648179 ( 6) ATGGAAGGAAAATAGAGGGAAGAAGAGAG 1 chr9:115143039-115143139 ( 31) ATGGAAGCAGAGGGCAGACAGGAAGTAGG 1 chr7:125407712-125407812 ( 64) GAACAATATACAGAGAGCCAGGAGATGAG 1 chr17:44134961-44135061 ( 71) GAGAATGGAGGAGCAACCGAGGAAGACGT 1 chr10:89194342-89194442 ( 13) GAGAAAAAAAAAAAAAAAAAGAAAGAAAG 1 chr5:66376917-66377017 ( 37) AGGAAAGAGAGGGCCTGGAATCAAGAGAG 1 chr14:37296623-37296723 ( 57) GAATGATGAAAACAGCCAAAGGAAGAGAG 1 chr19:32102291-32102391 ( 53) TCGGAAGCCCGAGGGAGGGAGGGAGGCAT 1 chr6:76382261-76382361 ( 26) GAAAGCTGAAGAGAGAGGGAGCACATCGG 1 chr2:169509960-169510060 ( 9) CAGAGAGAAAGGGAAAACGCTGACGAGAT 1 chr10:99309988-99310088 ( 16) GAGGAACGCAGCCGAAGGGCGAGGGGGAA 1 chr1:39453714-39453814 ( 17) GCGCGCGATACTGGATGGCATGGCAGCAG 1 chr3:65863233-65863333 ( 29) GACGGAGAACATCCCAGGCAGGAGGCCGG 1 chr18:33794629-33794729 ( 51) GCGTGCGAGCATAGAAAGGAGGAACTGCG 1 chr17:84877775-84877875 ( 54) CCGGAACCGGGTAAACAAGATGACGTCAG 1 chr2:34646184-34646284 ( 53) GGGAAAGGCGCGCCACCCCAGGTGGGCGG 1 chr16:50732538-50732638 ( 16) GCGGGACGTGGACCGGCACCGCGCGTGCG 1 chr18:36150522-36150622 ( 17) GCCCGTTCCCAGGAAAACGAGCACGAGAG 1 chr2:57181843-57181943 ( 35) GGGGATGTAGCTCAGTGGTAGAGCGCGCG 1 chr8:90000828-90000928 ( 30) GCGGGAGTTAGGCGTAAAGCGGTCTTAAG 1 chr2:92055295-92055395 ( 40) GCGCATGCGCGTCAGCGGCCCGAGTGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGRRAGRRARAGRRAGRSAGRAMGDGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.0476 E= 4.9e-008 -104 -212 178 -336 34 20 20 -104 -104 -212 183 -1189 22 -112 113 -178 96 -312 97 -1189 144 -154 -1189 -56 -236 -112 158 -78 64 -54 69 -236 54 -112 69 -104 122 -80 5 -1189 34 -12 97 -1189 88 -312 5 -19 -104 5 140 -336 110 -80 34 -1189 81 -12 34 -336 128 -112 -212 -56 -78 -31 152 -1189 88 -54 58 -1189 -56 34 113 -336 168 -80 -1189 -1189 -236 -312 178 -104 10 -80 134 -1189 122 -1189 34 -178 88 46 -31 -1189 -4 -212 140 -178 10 -212 46 34 -136 20 146 -1189 139 -54 -80 -1189 -104 -1189 174 -136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGRRAGRRARAGRRAGRSAGRAMGDGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 38 E= 4.9e-008 0.131579 0.052632 0.789474 0.026316 0.342105 0.263158 0.263158 0.131579 0.131579 0.052632 0.815789 0.000000 0.315789 0.105263 0.500000 0.078947 0.526316 0.026316 0.447368 0.000000 0.736842 0.078947 0.000000 0.184211 0.052632 0.105263 0.684211 0.157895 0.421053 0.157895 0.368421 0.052632 0.394737 0.105263 0.368421 0.131579 0.631579 0.131579 0.236842 0.000000 0.342105 0.210526 0.447368 0.000000 0.500000 0.026316 0.236842 0.236842 0.131579 0.236842 0.605263 0.026316 0.578947 0.131579 0.289474 0.000000 0.473684 0.210526 0.289474 0.026316 0.657895 0.105263 0.052632 0.184211 0.157895 0.184211 0.657895 0.000000 0.500000 0.157895 0.342105 0.000000 0.184211 0.289474 0.500000 0.026316 0.868421 0.131579 0.000000 0.000000 0.052632 0.026316 0.789474 0.131579 0.289474 0.131579 0.578947 0.000000 0.631579 0.000000 0.289474 0.078947 0.500000 0.315789 0.184211 0.000000 0.263158 0.052632 0.605263 0.078947 0.289474 0.052632 0.315789 0.342105 0.105263 0.263158 0.631579 0.000000 0.710526 0.157895 0.131579 0.000000 0.131579 0.000000 0.763158 0.105263 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVGRRAGRRARAGRRAGRSAGRAMGDGAG MEME-3 regular expression -------------------------------------------------------------------------------- G[ACG]G[GA][AG]AG[AG][AG][AG][GAC][AGT][GC][AG][AGC]AG[AG][GC]AG[GA][AG][AC][GA][TGA][GC]AG -------------------------------------------------------------------------------- Time 1456.50 secs. ******************************************************************************** ******************************************************************************** MOTIF RSHRCWGCTSTSHS MEME-4 width = 14 sites = 87 llr = 815 E-value = 2.0e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSHRCWGCTSTSHS MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5243:5::::1:5: pos.-specific C :33:a1:9:41624 probability G 44:5::a1:614:6 matrix T 1:32:4::9:6:31 bits 2.1 * 1.9 * * 1.7 * * 1.5 * ** Relative 1.3 * *** * Entropy 1.1 * **** * (13.5 bits) 0.9 * **** * * 0.6 ** ** **** * * 0.4 ************** 0.2 ************** 0.0 -------------- Multilevel AGAGCAGCTGTCAG consensus GCTA T C GTC sequence ACT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSHRCWGCTSTSHS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr18:71361719-71361819 + 65 2.13e-08 TCTGTTACAC AGAGCTGCTGTCAG GAAGAACACT chr17:26442177-26442277 - 30 1.31e-07 CCCCTCAGCA GGAGCTGCTGTCTG GAGCTGTAAA chr2:180897343-180897443 - 25 1.97e-07 TGAAGGGATG GGAGCAGCTGTGAG GGTGTAGGTG chr11:31641543-31641643 - 7 1.97e-07 GATTTTTGCA AGAGCAGCTGTGAG TAGCTG chr2:149929973-149930073 + 70 3.61e-07 AGCTTCTCCC AGAACAGCTGTCAG ATTGCCGTGA chr1:105327194-105327294 + 72 7.64e-07 GCCCACATAC AGAGCAGCTGTGAC CTCCTGTCCA chr11:90271136-90271236 + 80 1.14e-06 gagcagtctc agtacagctgtctg taaggag chr2:123023802-123023902 - 62 1.14e-06 ATTCAGAAGG GAAGCAGCTGTCTG CTGCCTCCTC chr4:125586788-125586888 + 72 1.40e-06 CACCAAGTAG AATGCTGCTCTCAG CCCTCTGAAC chr10:95264411-95264511 + 50 1.40e-06 CCAGCAAGCT AGTACTGCTGTCTG GGCAAAGCTC chr2:160433190-160433290 - 69 1.73e-06 GTGGCTGCTG AGCGCAGCTCTGCG AGGCCTGGTG chr16:34207813-34207913 + 11 1.73e-06 GAGGGAGCGG AGTGCTGCTCTCCC TGATGTGTGG chr8:11923040-11923140 - 17 2.06e-06 GTGTTTACTG AAAGCTGCTGTGAG CAGCTGTAGG chr15:59728750-59728850 - 37 2.06e-06 GAGAAAGCAG GGCTCAGCTGTCTG CAGACTCACT chrX:162257155-162257255 - 77 2.43e-06 AGCTGCTCAG AGTGCAGCTGTGCC ACAACTCCTA chr5:113195876-113195976 + 12 2.87e-06 TTGATTCAGC ACAGCAGCTGTGCC ATGCCGCCTT chr7:113961501-113961601 + 55 3.35e-06 GGGTGTCCTT GGCTCAGCTCTCTG CCTCCAGAGG chr14:11640950-11641050 + 81 3.35e-06 tgtgtagtgt gcttcagctgtcac ccatgc chr2:102293188-102293288 + 5 3.35e-06 AAGA ACAGCAGCTCGCAG GGGCACAGAG chr19:26318909-26319009 + 59 3.93e-06 ACTCAATTTC AGAGCTGCTGGCAC TGGGTTTGGG chr6:147211389-147211489 + 77 3.93e-06 GTAACACAGG AGATCTGCTCTCAC TGTCTCTAGG chr4:103964982-103965082 + 55 4.56e-06 AGGGTGTGAG GGATCTGCTCTGAG CAGGCTAAGA chr18:34980349-34980449 + 84 4.56e-06 TGTGCGTGAA GCTACTGCTCTGAG GAG chr11:96645440-96645540 - 31 5.23e-06 GCACATTTGT ACCGCAGCTGACAC CCAAAGCAGC chr15:44694691-44694791 + 44 5.23e-06 AAACTCCAGA GACACTGCTCTCAG GTACTCCTTG chr4:138551575-138551675 - 29 5.23e-06 CCGTGCCGGA GCAGCAGCTGGGAG CTTATACATC chr4:47757579-47757679 - 16 5.23e-06 CCCTGGTGTT GCTGCAGCTGGCAC ACAGCATGCC chr6:107421964-107422064 - 79 5.23e-06 TGCTGGAT GCTGCTGCTGACTG TGAGGCTCAT chr1:42773881-42773981 - 15 7.75e-06 GAGCTCTTTG AGTGCAGCTGGGTG TGTGGGCCGG chr2:68980744-68980844 + 3 7.75e-06 CC GCTACTGCTCTGTG CTATTTTTAT chr1:154688730-154688830 + 47 8.73e-06 ACCTGCCATA GAAGCAGCTCCCAG CTCTGCTCCA chr4:125824477-125824577 + 24 8.73e-06 CCTCTATAGA AGCTCAGCTGCCAG CTCTTCTTCA chr4:86024551-86024651 - 26 8.73e-06 TTTTTCCCTC AGCTCTGCTCTCCC CTGGAGGGCA chr17:10976153-10976253 - 76 9.78e-06 TTCCCCCAGC ACTGCTGCTGGCTC TGAGCTCCTG chr7:73423227-73423327 + 45 9.78e-06 ttggcttgct ggtacagctggctg tgtaacgctt chr4:16852573-16852673 - 73 1.10e-05 AAAGCCTTCT GCCGCTGCTGTCAT CGCTTCCATG chr8:17368942-17369042 + 47 1.10e-05 GGGTGAGATA AACACAGCTGTCCC TTTCTAGGAG chr12:70712295-70712395 - 57 1.10e-05 GGATCTCTGT GCCTCTGCTCTCCC AAGATGATCA chr12:82865613-82865713 + 84 1.38e-05 CAGTGAATAA AAAGCAGCTCCCTG GAG chr10:9586241-9586341 + 34 1.38e-05 ATCTCCATCT AATGCTGCTGGCAC AGGCCTCGGC chr4:127635177-127635277 - 52 1.71e-05 AAGATGTTTG ACTTCAGCTCTGTC TAGCTCCACG chr2:156446592-156446692 + 41 1.89e-05 agcagacact acatctgctgccac cttgatctca chr1:168117966-168118066 - 18 1.89e-05 TTCCACAGGG AATACTGCTCTGAC TGTCACCGAG chr19:57582151-57582251 + 13 1.89e-05 ACGCACCCAT GCTGCTGCGCTCAG CCAGGGCTGC chr6:67318455-67318555 - 71 1.89e-05 CACTCCAGAT AACGCTGCTCGCCG CTGCCCACCA chr11:18469549-18469649 + 16 2.09e-05 agaaatggag tgcacagctgtgag aaatttcaag chr4:57473165-57473265 - 37 2.53e-05 AGAGCTTTGG GACTCAGCTGTGTC TGGACCACTC chr12:50999565-50999665 + 77 2.53e-05 GCCTCCACTT ACAGCAGCGCTCAC TCCCACCCTG chr11:71929653-71929753 + 8 2.53e-05 gggtgga actgcagctcagcc tcacccacat chr13:69460002-69460102 + 22 2.53e-05 Aagtcaccat ggagctgcgctgag gcgatggcgc chr2:97719625-97719725 - 52 2.53e-05 TGTTTTCAGC ACAGCTGGTGTGTG CTATAAATAA chr10:69640623-69640723 - 16 2.77e-05 GTACCACGTG TATGCAGCTCTCAC AGAAGCCTCA chr3:149445227-149445327 + 70 2.77e-05 TCTCAGAAGA GCTACAGCTCCCTC TTCATGCCAC chr17:27761614-27761714 - 61 3.04e-05 TGTAGTCACT GAAGCAGCTGTCCT CCATTCCCTG chr16:31508053-31508153 - 75 3.04e-05 CCTTATAGCT ACTACAGCTCACCC TCTCAGTGCC chr14:61680681-61680781 + 12 3.04e-05 ACCTATAAAT AGCGCCGCTCACCG AGCTGAGTCA chr9:34736209-34736309 + 26 3.32e-05 TGGCCTAACG ACCAcagcagtcag aagatgaaga chrX:86900238-86900338 + 24 3.32e-05 CTCTCCTGCT AGTTCTGCTCCCTC CAAAACATCT chr2:124293501-124293601 + 30 3.32e-05 CCTTGTGTGC TGTACAGCTGTGCG TGTGGGAGTA chr11:47137092-47137192 - 82 3.32e-05 AGACA GAAGCAGCTGTGAT TCCTCTTGCC chr12:37908243-37908343 - 13 3.92e-05 ACCAGAGGCC ACATCTGCTCACCC CAGCTTTATT chr17:84877775-84877875 + 31 3.92e-05 GTGGCAGTAG AGAACCGCTGCCTG CCCAGCACAC chr16:12095356-12095456 + 71 3.92e-05 CAGGGTGCAG GATACAGCTCAGAG GCCCTAGGAA chr13:43514811-43514911 - 27 4.26e-05 GTCCCCAGCT GGCACTGCAGTCTG GGAAGGCTAT chr4:125462080-125462180 - 62 4.62e-05 ACGGGTGCAG GGCTCGGCTCTCAC CCATCTGGTG chr3:37271106-37271206 - 80 4.62e-05 GATGGCA GCAGCGGCTGCCTG TAGGTTAGCA chr2:72016016-72016116 + 22 5.00e-05 CGCAGAGCTA GGTTCGGCTCTGAG GCAGTTGTCT chr11:109891940-10989204 - 78 5.00e-05 CCGGTGCTC TGTGCAGCTGCGTG AAGATGGGTG chr18:23309841-23309941 + 61 5.40e-05 GCAGCAGCCA GCCTCCGCTGTGCC CACATGACCC chr10:126926978-12692707 - 51 5.83e-05 AGGGAAGCCA ACAACAGGTCTCCC GTGCTGGGAA chr6:49523118-49523218 - 65 6.29e-05 TTCACCCTCT ACCGATGCTGTGAG CTTACTGTCC chr3:78015463-78015563 + 78 6.29e-05 GATTTAGCAT GGAACTGCTGACAT TTTGGGGCC chr8:109458559-109458659 - 4 6.29e-05 CGGCACCGCT GGTGCCGGTCTCAC GCA chr1:170504430-170504530 - 65 6.79e-05 GCTCTAGCCT AGAGCTGGTGAGTG GGGAGTCTAG chr13:56112922-56113022 - 10 7.30e-05 CCCCACAGCA TGCACAGCTCGCTG CTGTGCCTA chr8:83032833-83032933 - 61 7.30e-05 GCTTTCACAG AGAACAGATCTCCG TCCTACTCAC chr19:41642952-41643052 - 17 8.45e-05 ACTCTGCACA GCCGCCGATGTCAG CCACAAGAAC chr14:36525420-36525520 - 26 8.45e-05 GTTCTTGGGA AGAACAGATGTGTG TGGGAGTGTT chr4:95159749-95159849 + 73 9.09e-05 gcacCAAAGC ACTGCTGCGCACAC ACCGAATCCC chr12:78788416-78788516 + 68 1.05e-04 TGAGAAGCTG GGTTATGCTGTCTG CTGCTTATCT chr13:60488609-60488709 + 16 1.05e-04 TAACCACTCG ACAACTGCTGCCCT ACTTTAAGTG chr4:86810501-86810601 - 36 1.05e-04 CTAGTGTTTG GACGCAGGTCACTG CATCTGCTCC chr5:151368356-151368456 - 2 1.05e-04 GGAGGCGGTA ACTTCCGCTGCGCG C chr7:64950395-64950495 + 72 1.29e-04 GAGAACAAAG GGAGCCGCAGACAG TGTTGGATGT chr16:50736680-50736780 - 9 1.29e-04 TTGAAGGGTT TGCGCTGGTCTGTG TAAGAGCG chr1:184958774-184958874 + 83 1.38e-04 GCTACACACG GAAGCTGCAGAGAG TACG chr1:39453714-39453814 + 61 1.38e-04 GCAGCCGCAC GACACTGGTGTGCC GACTCCCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSHRCWGCTSTSHS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:71361719-71361819 2.1e-08 64_[+4]_22 chr17:26442177-26442277 1.3e-07 29_[-4]_57 chr2:180897343-180897443 2e-07 24_[-4]_62 chr11:31641543-31641643 2e-07 6_[-4]_80 chr2:149929973-149930073 3.6e-07 69_[+4]_17 chr1:105327194-105327294 7.6e-07 71_[+4]_15 chr11:90271136-90271236 1.1e-06 79_[+4]_7 chr2:123023802-123023902 1.1e-06 61_[-4]_25 chr4:125586788-125586888 1.4e-06 71_[+4]_15 chr10:95264411-95264511 1.4e-06 49_[+4]_37 chr2:160433190-160433290 1.7e-06 68_[-4]_18 chr16:34207813-34207913 1.7e-06 10_[+4]_76 chr8:11923040-11923140 2.1e-06 16_[-4]_70 chr15:59728750-59728850 2.1e-06 36_[-4]_50 chrX:162257155-162257255 2.4e-06 76_[-4]_10 chr5:113195876-113195976 2.9e-06 11_[+4]_75 chr7:113961501-113961601 3.4e-06 54_[+4]_32 chr14:11640950-11641050 3.4e-06 80_[+4]_6 chr2:102293188-102293288 3.4e-06 4_[+4]_82 chr19:26318909-26319009 3.9e-06 58_[+4]_28 chr6:147211389-147211489 3.9e-06 76_[+4]_10 chr4:103964982-103965082 4.6e-06 54_[+4]_32 chr18:34980349-34980449 4.6e-06 83_[+4]_3 chr11:96645440-96645540 5.2e-06 30_[-4]_56 chr15:44694691-44694791 5.2e-06 43_[+4]_43 chr4:138551575-138551675 5.2e-06 28_[-4]_58 chr4:47757579-47757679 5.2e-06 15_[-4]_71 chr6:107421964-107422064 5.2e-06 78_[-4]_8 chr1:42773881-42773981 7.7e-06 14_[-4]_72 chr2:68980744-68980844 7.7e-06 2_[+4]_84 chr1:154688730-154688830 8.7e-06 46_[+4]_40 chr4:125824477-125824577 8.7e-06 23_[+4]_63 chr4:86024551-86024651 8.7e-06 25_[-4]_61 chr17:10976153-10976253 9.8e-06 75_[-4]_11 chr7:73423227-73423327 9.8e-06 44_[+4]_42 chr4:16852573-16852673 1.1e-05 72_[-4]_14 chr8:17368942-17369042 1.1e-05 46_[+4]_40 chr12:70712295-70712395 1.1e-05 56_[-4]_30 chr12:82865613-82865713 1.4e-05 83_[+4]_3 chr10:9586241-9586341 1.4e-05 33_[+4]_53 chr4:127635177-127635277 1.7e-05 51_[-4]_35 chr2:156446592-156446692 1.9e-05 40_[+4]_46 chr1:168117966-168118066 1.9e-05 17_[-4]_69 chr19:57582151-57582251 1.9e-05 12_[+4]_74 chr6:67318455-67318555 1.9e-05 70_[-4]_16 chr11:18469549-18469649 2.1e-05 15_[+4]_71 chr4:57473165-57473265 2.5e-05 36_[-4]_50 chr12:50999565-50999665 2.5e-05 76_[+4]_10 chr11:71929653-71929753 2.5e-05 7_[+4]_79 chr13:69460002-69460102 2.5e-05 21_[+4]_65 chr2:97719625-97719725 2.5e-05 51_[-4]_35 chr10:69640623-69640723 2.8e-05 15_[-4]_71 chr3:149445227-149445327 2.8e-05 69_[+4]_17 chr17:27761614-27761714 3e-05 60_[-4]_26 chr16:31508053-31508153 3e-05 74_[-4]_12 chr14:61680681-61680781 3e-05 11_[+4]_75 chr9:34736209-34736309 3.3e-05 25_[+4]_61 chrX:86900238-86900338 3.3e-05 23_[+4]_63 chr2:124293501-124293601 3.3e-05 29_[+4]_57 chr11:47137092-47137192 3.3e-05 81_[-4]_5 chr12:37908243-37908343 3.9e-05 12_[-4]_74 chr17:84877775-84877875 3.9e-05 30_[+4]_56 chr16:12095356-12095456 3.9e-05 70_[+4]_16 chr13:43514811-43514911 4.3e-05 26_[-4]_60 chr4:125462080-125462180 4.6e-05 61_[-4]_25 chr3:37271106-37271206 4.6e-05 79_[-4]_7 chr2:72016016-72016116 5e-05 21_[+4]_65 chr11:109891940-10989204 5e-05 77_[-4]_9 chr18:23309841-23309941 5.4e-05 60_[+4]_26 chr10:126926978-12692707 5.8e-05 50_[-4]_36 chr6:49523118-49523218 6.3e-05 64_[-4]_22 chr3:78015463-78015563 6.3e-05 77_[+4]_9 chr8:109458559-109458659 6.3e-05 3_[-4]_83 chr1:170504430-170504530 6.8e-05 64_[-4]_22 chr13:56112922-56113022 7.3e-05 9_[-4]_77 chr8:83032833-83032933 7.3e-05 60_[-4]_26 chr19:41642952-41643052 8.5e-05 16_[-4]_70 chr14:36525420-36525520 8.5e-05 25_[-4]_61 chr4:95159749-95159849 9.1e-05 72_[+4]_14 chr12:78788416-78788516 0.0001 67_[+4]_19 chr13:60488609-60488709 0.0001 15_[+4]_71 chr4:86810501-86810601 0.0001 35_[-4]_51 chr5:151368356-151368456 0.0001 1_[-4]_85 chr7:64950395-64950495 0.00013 71_[+4]_15 chr16:50736680-50736780 0.00013 8_[-4]_78 chr1:184958774-184958874 0.00014 82_[+4]_4 chr1:39453714-39453814 0.00014 60_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSHRCWGCTSTSHS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSHRCWGCTSTSHS width=14 seqs=87 chr18:71361719-71361819 ( 65) AGAGCTGCTGTCAG 1 chr17:26442177-26442277 ( 30) GGAGCTGCTGTCTG 1 chr2:180897343-180897443 ( 25) GGAGCAGCTGTGAG 1 chr11:31641543-31641643 ( 7) AGAGCAGCTGTGAG 1 chr2:149929973-149930073 ( 70) AGAACAGCTGTCAG 1 chr1:105327194-105327294 ( 72) AGAGCAGCTGTGAC 1 chr11:90271136-90271236 ( 80) AGTACAGCTGTCTG 1 chr2:123023802-123023902 ( 62) GAAGCAGCTGTCTG 1 chr4:125586788-125586888 ( 72) AATGCTGCTCTCAG 1 chr10:95264411-95264511 ( 50) AGTACTGCTGTCTG 1 chr2:160433190-160433290 ( 69) AGCGCAGCTCTGCG 1 chr16:34207813-34207913 ( 11) AGTGCTGCTCTCCC 1 chr8:11923040-11923140 ( 17) AAAGCTGCTGTGAG 1 chr15:59728750-59728850 ( 37) GGCTCAGCTGTCTG 1 chrX:162257155-162257255 ( 77) AGTGCAGCTGTGCC 1 chr5:113195876-113195976 ( 12) ACAGCAGCTGTGCC 1 chr7:113961501-113961601 ( 55) GGCTCAGCTCTCTG 1 chr14:11640950-11641050 ( 81) GCTTCAGCTGTCAC 1 chr2:102293188-102293288 ( 5) ACAGCAGCTCGCAG 1 chr19:26318909-26319009 ( 59) AGAGCTGCTGGCAC 1 chr6:147211389-147211489 ( 77) AGATCTGCTCTCAC 1 chr4:103964982-103965082 ( 55) GGATCTGCTCTGAG 1 chr18:34980349-34980449 ( 84) GCTACTGCTCTGAG 1 chr11:96645440-96645540 ( 31) ACCGCAGCTGACAC 1 chr15:44694691-44694791 ( 44) GACACTGCTCTCAG 1 chr4:138551575-138551675 ( 29) GCAGCAGCTGGGAG 1 chr4:47757579-47757679 ( 16) GCTGCAGCTGGCAC 1 chr6:107421964-107422064 ( 79) GCTGCTGCTGACTG 1 chr1:42773881-42773981 ( 15) AGTGCAGCTGGGTG 1 chr2:68980744-68980844 ( 3) GCTACTGCTCTGTG 1 chr1:154688730-154688830 ( 47) GAAGCAGCTCCCAG 1 chr4:125824477-125824577 ( 24) AGCTCAGCTGCCAG 1 chr4:86024551-86024651 ( 26) AGCTCTGCTCTCCC 1 chr17:10976153-10976253 ( 76) ACTGCTGCTGGCTC 1 chr7:73423227-73423327 ( 45) GGTACAGCTGGCTG 1 chr4:16852573-16852673 ( 73) GCCGCTGCTGTCAT 1 chr8:17368942-17369042 ( 47) AACACAGCTGTCCC 1 chr12:70712295-70712395 ( 57) GCCTCTGCTCTCCC 1 chr12:82865613-82865713 ( 84) AAAGCAGCTCCCTG 1 chr10:9586241-9586341 ( 34) AATGCTGCTGGCAC 1 chr4:127635177-127635277 ( 52) ACTTCAGCTCTGTC 1 chr2:156446592-156446692 ( 41) ACATCTGCTGCCAC 1 chr1:168117966-168118066 ( 18) AATACTGCTCTGAC 1 chr19:57582151-57582251 ( 13) GCTGCTGCGCTCAG 1 chr6:67318455-67318555 ( 71) AACGCTGCTCGCCG 1 chr11:18469549-18469649 ( 16) TGCACAGCTGTGAG 1 chr4:57473165-57473265 ( 37) GACTCAGCTGTGTC 1 chr12:50999565-50999665 ( 77) ACAGCAGCGCTCAC 1 chr11:71929653-71929753 ( 8) ACTGCAGCTCAGCC 1 chr13:69460002-69460102 ( 22) GGAGCTGCGCTGAG 1 chr2:97719625-97719725 ( 52) ACAGCTGGTGTGTG 1 chr10:69640623-69640723 ( 16) TATGCAGCTCTCAC 1 chr3:149445227-149445327 ( 70) GCTACAGCTCCCTC 1 chr17:27761614-27761714 ( 61) GAAGCAGCTGTCCT 1 chr16:31508053-31508153 ( 75) ACTACAGCTCACCC 1 chr14:61680681-61680781 ( 12) AGCGCCGCTCACCG 1 chr9:34736209-34736309 ( 26) ACCACAGCAGTCAG 1 chrX:86900238-86900338 ( 24) AGTTCTGCTCCCTC 1 chr2:124293501-124293601 ( 30) TGTACAGCTGTGCG 1 chr11:47137092-47137192 ( 82) GAAGCAGCTGTGAT 1 chr12:37908243-37908343 ( 13) ACATCTGCTCACCC 1 chr17:84877775-84877875 ( 31) AGAACCGCTGCCTG 1 chr16:12095356-12095456 ( 71) GATACAGCTCAGAG 1 chr13:43514811-43514911 ( 27) GGCACTGCAGTCTG 1 chr4:125462080-125462180 ( 62) GGCTCGGCTCTCAC 1 chr3:37271106-37271206 ( 80) GCAGCGGCTGCCTG 1 chr2:72016016-72016116 ( 22) GGTTCGGCTCTGAG 1 chr11:109891940-10989204 ( 78) TGTGCAGCTGCGTG 1 chr18:23309841-23309941 ( 61) GCCTCCGCTGTGCC 1 chr10:126926978-12692707 ( 51) ACAACAGGTCTCCC 1 chr6:49523118-49523218 ( 65) ACCGATGCTGTGAG 1 chr3:78015463-78015563 ( 78) GGAACTGCTGACAT 1 chr8:109458559-109458659 ( 4) GGTGCCGGTCTCAC 1 chr1:170504430-170504530 ( 65) AGAGCTGGTGAGTG 1 chr13:56112922-56113022 ( 10) TGCACAGCTCGCTG 1 chr8:83032833-83032933 ( 61) AGAACAGATCTCCG 1 chr19:41642952-41643052 ( 17) GCCGCCGATGTCAG 1 chr14:36525420-36525520 ( 26) AGAACAGATGTGTG 1 chr4:95159749-95159849 ( 73) ACTGCTGCGCACAC 1 chr12:78788416-78788516 ( 68) GGTTATGCTGTCTG 1 chr13:60488609-60488709 ( 16) ACAACTGCTGCCCT 1 chr4:86810501-86810601 ( 36) GACGCAGGTCACTG 1 chr5:151368356-151368456 ( 2) ACTTCCGCTGCGCG 1 chr7:64950395-64950495 ( 72) GGAGCCGCAGACAG 1 chr16:50736680-50736780 ( 9) TGCGCTGGTCTGTG 1 chr1:184958774-184958874 ( 83) GAAGCTGCAGAGAG 1 chr1:39453714-39453814 ( 61) GACACTGGTGTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSHRCWGCTSTSHS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 10.2443 E= 2.0e-013 90 -1309 89 -197 -39 59 97 -1309 49 27 -1309 35 3 -1309 117 -39 -356 209 -1309 -1309 80 -151 -273 61 -1309 -1309 213 -1309 -297 195 -151 -1309 -256 -1309 -232 174 -1309 89 133 -1309 -86 -86 -99 117 -1309 146 68 -1309 76 0 -1309 20 -1309 64 136 -224 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSHRCWGCTSTSHS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 87 E= 2.0e-013 0.505747 0.000000 0.425287 0.068966 0.206897 0.344828 0.448276 0.000000 0.379310 0.275862 0.000000 0.344828 0.275862 0.000000 0.517241 0.206897 0.022989 0.977011 0.000000 0.000000 0.471264 0.080460 0.034483 0.413793 0.000000 0.000000 1.000000 0.000000 0.034483 0.885057 0.080460 0.000000 0.045977 0.000000 0.045977 0.908046 0.000000 0.425287 0.574713 0.000000 0.149425 0.126437 0.114943 0.609195 0.000000 0.632184 0.367816 0.000000 0.459770 0.229885 0.000000 0.310345 0.000000 0.356322 0.586207 0.057471 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSHRCWGCTSTSHS MEME-4 regular expression -------------------------------------------------------------------------------- [AG][GCA][ATC][GAT]C[AT]GCT[GC]T[CG][ATC][GC] -------------------------------------------------------------------------------- Time 1900.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTGTGAGCCACCATGTGGKTGCTGGRA MEME-5 width = 28 sites = 5 llr = 164 E-value = 5.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTGTGAGCCACCATGTGGKTGCTGGRA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::2::a:::8::8::::::::::2:4a pos.-specific C ::22::::a8:aa::2::::::8::::: probability G 8::6:a:a::2::2:8:aa4:a::8a6: matrix T 2a8:a::::2::::a:a::6a:2a:::: bits 2.1 * ** ** ** * * 1.9 * ***** ** * *** ** * * * 1.7 * ***** ** * *** ** * * * 1.5 * ***** ** ***** ** * * * Relative 1.3 *** *************** ****** * Entropy 1.1 *** ************************ (47.4 bits) 0.9 *** ************************ 0.6 **************************** 0.4 **************************** 0.2 **************************** 0.0 ---------------------------- Multilevel GTTGTGAGCCACCATGTGGTTGCTGGGA consensus T CA TG G C G T A A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGAGCCACCATGTGGKTGCTGGRA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chr3:134191162-134191262 + 20 8.97e-18 catttaggtg gttgtgagccaccatgtggttgctggga tttgaactca chr2:52472921-52473021 - 3 7.85e-17 GTTACAGATG GTTATGAGCCACCATGTGGTTGCTGGGA TT chr11:20067435-20067535 - 46 3.63e-16 ATTACAGATG TTTGTGAGCCACCATGTGGTTGCTGGAA ATTGAACTCA chr19:36495418-36495518 - 9 1.12e-15 GGAACAGATG GTTGTGAGCCACCGTGTGGGTGTTGGGA ACCAAACT chr13:59210737-59210837 - 63 3.21e-14 GTTACATATA GTCCTGAGCTGCCATCTGGGTGCTAGAA AAGGCACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGAGCCACCATGTGGKTGCTGGRA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:134191162-134191262 9e-18 19_[+5]_53 chr2:52472921-52473021 7.8e-17 2_[-5]_70 chr11:20067435-20067535 3.6e-16 45_[-5]_27 chr19:36495418-36495518 1.1e-15 8_[-5]_64 chr13:59210737-59210837 3.2e-14 62_[-5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGAGCCACCATGTGGKTGCTGGRA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTGTGAGCCACCATGTGGKTGCTGGRA width=28 seqs=5 chr3:134191162-134191262 ( 20) GTTGTGAGCCACCATGTGGTTGCTGGGA 1 chr2:52472921-52473021 ( 3) GTTATGAGCCACCATGTGGTTGCTGGGA 1 chr11:20067435-20067535 ( 46) TTTGTGAGCCACCATGTGGTTGCTGGAA 1 chr19:36495418-36495518 ( 9) GTTGTGAGCCACCGTGTGGGTGTTGGGA 1 chr13:59210737-59210837 ( 63) GTCCTGAGCTGCCATCTGGGTGCTAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGAGCCACCATGTGGKTGCTGGRA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 14.04 E= 5.3e-008 -897 -897 180 -44 -897 -897 -897 188 -897 -20 -897 156 -44 -20 139 -897 -897 -897 -897 188 -897 -897 212 -897 188 -897 -897 -897 -897 -897 212 -897 -897 212 -897 -897 -897 180 -897 -44 156 -897 -20 -897 -897 212 -897 -897 -897 212 -897 -897 156 -897 -20 -897 -897 -897 -897 188 -897 -20 180 -897 -897 -897 -897 188 -897 -897 212 -897 -897 -897 212 -897 -897 -897 80 115 -897 -897 -897 188 -897 -897 212 -897 -897 180 -897 -44 -897 -897 -897 188 -44 -897 180 -897 -897 -897 212 -897 56 -897 139 -897 188 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGAGCCACCATGTGGKTGCTGGRA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 5 E= 5.3e-008 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.200000 0.200000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGAGCCACCATGTGGKTGCTGGRA MEME-5 regular expression -------------------------------------------------------------------------------- [GT]T[TC][GAC]TGAGC[CT][AG]CC[AG]T[GC]TGG[TG]TG[CT]T[GA]G[GA]A -------------------------------------------------------------------------------- Time 2327.71 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACASACACA MEME-6 width = 11 sites = 23 llr = 278 E-value = 2.6e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACASACACA MEME-6 Description -------------------------------------------------------------------------------- Simplified A a:a:a:91a:a pos.-specific C :9:9:5:9:9: probability G :::::31:::: matrix T :1:1:2:::1: bits 2.1 1.9 * * * 1.7 *** * *** 1.5 ***** ***** Relative 1.3 ***** ***** Entropy 1.1 ***** ***** (17.4 bits) 0.9 ***** ***** 0.6 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel ACACACACACA consensus G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACASACACA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr1:193447629-193447729 - 35 2.49e-07 ATGCATGTGC ACACACACACA CACACAATCT chr17:73489800-73489900 - 78 2.49e-07 CATATGCATT ACACACACACA CAGACACACA chr19:47276770-47276870 - 2 2.49e-07 CCAGCCTTAG ACACACACACA C chr6:28596818-28596918 + 27 2.49e-07 aATTacacac acacacacaca cgcacacgca chr14:84539508-84539608 - 7 2.49e-07 TCAAACAGTA ACACACACACA TGCACA chr11:109891940-10989204 + 7 2.49e-07 TAAACC ACACACACACA AAGTCATAGT chr2:147226400-147226500 - 71 2.49e-07 GTACGTGCGC ACACACACACA GTCACAGGCA chr15:31510472-31510572 + 62 2.49e-07 GGCTCTAAGC ACACACACACA CCCTGCCCTC chr10:69640623-69640723 + 38 4.99e-07 tacacgtggt acacagacaca ggtgcaggca chr4:125586788-125586888 + 51 7.94e-07 GTGCCAGGCT ACACATACACA CACCAAGTAG chr11:83370658-83370758 + 23 7.94e-07 cacacttggt acacatacaca catgtatgca chr14:121286040-12128614 + 9 1.38e-06 CTGTCTCA ACATACACACA CTTCCTCAAC chr15:94811052-94811152 + 42 2.19e-06 aTTcacatgt acacacacata cataccacat chr15:44669933-44670033 - 70 2.19e-06 AAATGACTGC ACACACACATA TGGAGAGCCC chr6:126581690-126581790 - 21 2.78e-06 GCAGATGCAC ACACAGAAACA GGGAGGTGTG chr2:62804184-62804284 + 34 2.78e-06 cacctatgta acacagaaaca ccacaaagta chr4:16852573-16852673 + 54 3.20e-06 GGTTTCTAAG ACACAGGCACA TGGAAGCGAT chr1:192244399-192244499 - 20 4.99e-06 ATGACTTCTG ACACATGCACA CATATGCATA chr1:25761152-25761252 + 81 4.99e-06 ACCAAATACT ATACAGACACA TAAAGAGAC chr15:79380968-79381068 - 68 5.90e-06 CAGTGCTCAT ACACAGACACC TTCTCCGTTT chr19:36495418-36495518 + 71 6.74e-06 cttctgatgc acatacaaaca tgcaggcaaa chr3:108492899-108492999 + 30 7.54e-06 AAGCAAAAGC ACACTTACACA CCGAAACACA chr9:41582026-41582126 - 64 1.83e-05 TATCAGCCAT ATATATACACA GGCGTCCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACASACACA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:193447629-193447729 2.5e-07 34_[-6]_55 chr17:73489800-73489900 2.5e-07 77_[-6]_12 chr19:47276770-47276870 2.5e-07 1_[-6]_88 chr6:28596818-28596918 2.5e-07 26_[+6]_63 chr14:84539508-84539608 2.5e-07 6_[-6]_83 chr11:109891940-10989204 2.5e-07 6_[+6]_83 chr2:147226400-147226500 2.5e-07 70_[-6]_19 chr15:31510472-31510572 2.5e-07 61_[+6]_28 chr10:69640623-69640723 5e-07 37_[+6]_52 chr4:125586788-125586888 7.9e-07 50_[+6]_39 chr11:83370658-83370758 7.9e-07 22_[+6]_67 chr14:121286040-12128614 1.4e-06 8_[+6]_81 chr15:94811052-94811152 2.2e-06 41_[+6]_48 chr15:44669933-44670033 2.2e-06 69_[-6]_20 chr6:126581690-126581790 2.8e-06 20_[-6]_69 chr2:62804184-62804284 2.8e-06 33_[+6]_56 chr4:16852573-16852673 3.2e-06 53_[+6]_36 chr1:192244399-192244499 5e-06 19_[-6]_70 chr1:25761152-25761252 5e-06 80_[+6]_9 chr15:79380968-79381068 5.9e-06 67_[-6]_22 chr19:36495418-36495518 6.7e-06 70_[+6]_19 chr3:108492899-108492999 7.5e-06 29_[+6]_60 chr9:41582026-41582126 1.8e-05 63_[-6]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACASACACA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACASACACA width=11 seqs=23 chr1:193447629-193447729 ( 35) ACACACACACA 1 chr17:73489800-73489900 ( 78) ACACACACACA 1 chr19:47276770-47276870 ( 2) ACACACACACA 1 chr6:28596818-28596918 ( 27) ACACACACACA 1 chr14:84539508-84539608 ( 7) ACACACACACA 1 chr11:109891940-10989204 ( 7) ACACACACACA 1 chr2:147226400-147226500 ( 71) ACACACACACA 1 chr15:31510472-31510572 ( 62) ACACACACACA 1 chr10:69640623-69640723 ( 38) ACACAGACACA 1 chr4:125586788-125586888 ( 51) ACACATACACA 1 chr11:83370658-83370758 ( 23) ACACATACACA 1 chr14:121286040-12128614 ( 9) ACATACACACA 1 chr15:94811052-94811152 ( 42) ACACACACATA 1 chr15:44669933-44670033 ( 70) ACACACACATA 1 chr6:126581690-126581790 ( 21) ACACAGAAACA 1 chr2:62804184-62804284 ( 34) ACACAGAAACA 1 chr4:16852573-16852673 ( 54) ACACAGGCACA 1 chr1:192244399-192244499 ( 20) ACACATGCACA 1 chr1:25761152-25761252 ( 81) ATACAGACACA 1 chr15:79380968-79381068 ( 68) ACACAGACACC 1 chr19:36495418-36495518 ( 71) ACATACAAACA 1 chr3:108492899-108492999 ( 30) ACACTTACACA 1 chr9:41582026-41582126 ( 64) ATATATACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACASACACA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 12.2609 E= 2.6e-006 188 -1117 -1117 -1117 -1117 199 -1117 -164 188 -1117 -1117 -1117 -1117 192 -1117 -105 182 -1117 -1117 -264 -1117 119 19 -32 175 -1117 -140 -1117 -105 192 -1117 -1117 188 -1117 -1117 -1117 -1117 199 -1117 -164 182 -239 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACASACACA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 23 E= 2.6e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.913043 0.000000 0.086957 1.000000 0.000000 0.000000 0.000000 0.000000 0.869565 0.000000 0.130435 0.956522 0.000000 0.000000 0.043478 0.000000 0.521739 0.260870 0.217391 0.913043 0.000000 0.086957 0.000000 0.130435 0.869565 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.913043 0.000000 0.086957 0.956522 0.043478 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACASACACA MEME-6 regular expression -------------------------------------------------------------------------------- ACACA[CGT]ACACA -------------------------------------------------------------------------------- Time 2756.56 secs. ******************************************************************************** ******************************************************************************** MOTIF SCTSTGVRGAGRSMG MEME-7 width = 15 sites = 48 llr = 502 E-value = 1.3e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCTSTGVRGAGRSMG MEME-7 Description -------------------------------------------------------------------------------- Simplified A 2:3:3:34:8:4:53 pos.-specific C 3a:51:3:::3:53: probability G 5::5:a34a176517 matrix T ::7:6:11:2:::2: bits 2.1 * 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 * * * * * Entropy 1.1 * * * *** * (15.1 bits) 0.9 ** * ***** * 0.6 ****** ****** * 0.4 ****** ****** * 0.2 *************** 0.0 --------------- Multilevel GCTCTGAAGAGGGAG consensus C AGA GG CACCA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTSTGVRGAGRSMG MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr13:112840685-11284078 + 9 8.56e-09 CTTTCCGG GCTGTGAGGAGGCAG AACGcagtcc chr10:95264411-95264511 + 70 2.28e-08 TCTGGGCAAA GCTCTGCGGAGGCCG CTGGAAGAAA chr15:82964299-82964399 - 50 3.60e-08 GGGATGCCAG CCTGTGAGGAGGCAG GCAGGCAGGG chr4:155144192-155144292 + 38 6.04e-08 GCCCCAGCGG GCTCAGGGGAGGGAG AGAGGGCTGT chr15:35766305-35766405 + 27 3.18e-07 CACATAAAGG GCTGTGAGGACAGAG CAGGTAAATC chr14:99491603-99491703 - 19 3.18e-07 TGCAGTGCCA GCTCTGAGGTGGCAG AGGCAGAAAC chr7:113961501-113961601 + 13 3.96e-07 CTGCCTAAGC CCTCTGCAGAGGCTG AGTATCTCTC chr13:25727456-25727556 + 31 7.38e-07 GCTGTAGTTC CCTCTGAGGAGGGCA GTAGAGACCC chr13:36444632-36444732 + 58 8.87e-07 TGTGGGAAAC CCTGTGAAGACACAG AAGCTGGTGC chr3:108492899-108492999 - 64 8.87e-07 AGGGATCCTG CCTCTGCTGAGGGCG CCGCCATATT chr15:72516977-72517077 - 71 1.02e-06 TTGCATTCAT GCTCTGCAGTGACAG ATCACCCGCC chr13:103564151-10356425 + 29 1.14e-06 AGTAATAAGA ACTGTGGAGAGGGTG GTGTGCCACC chr10:126926978-12692707 - 80 1.14e-06 GGGAGG CCTCTGGGGAGGCGG TTTGGAGGGA chr4:32306327-32306427 + 13 1.53e-06 GTGTGCCTTT CCACAGGAGAGGCAG GCATACATTT chr2:34646184-34646284 - 23 1.77e-06 GGCCTCCTGG GCTGAGTGGAGAGAG AAGCTGAGGG chr3:28144620-28144720 + 43 1.77e-06 ATTGCCATAT GCAGTGAGGAGGCCA TGCAAGGTCA chr13:57837670-57837770 - 14 2.02e-06 CCTCCAGGGA GCTCTGTGGAGACTG TACCCTTGGC chr16:92738222-92738322 - 78 2.24e-06 TTTAAAAG GCAGCGGAGAGGCAG AGTTCTGGAT chr5:44756225-44756325 - 38 2.51e-06 GTTTCAATTG ACTGTGCAGAGGGCA AATCTCAGGA chr3:51749966-51750066 - 17 2.85e-06 CTTGGTTGTT CCTCAGCAGACACAG GACTCTCACT chr7:3460298-3460398 + 70 3.26e-06 TCACAGGGAG GCTCTGGGGTGAGAA GAGAGGCTGG chr6:32353792-32353892 + 15 3.26e-06 TGAAAAGGAG GCTCAGAAGAGGGTA AACCATGGGC chr13:56112922-56113022 + 25 3.67e-06 AGCTGTGCAT GCTGTGGGGGCGGCG CTTTGACATG chr3:104675322-104675422 + 21 4.99e-06 CTCCGACATA GCTCCGTAGAGACAG TTCAGGCCCT chr2:122666226-122666326 - 61 5.60e-06 TCACCTGCAG CCTCAGCTGAGGCTG TCCACCGGCT chr1:33946985-33947085 - 53 7.43e-06 AAGACCGCCT GCTGAGCAGGCGCAG AATCAGTGCA chr11:25849353-25849453 + 4 7.43e-06 CCT GCTGAGGAGTCACAG AACCTGGGCA chr2:69015291-69015391 - 3 7.43e-06 AGGCTGTTTG ACAGTGGTGAGGGCG GG chr1:89525817-89525917 - 73 8.17e-06 CAGACTCCGG GCAGTGGGGACAGCA CTCTGTTTGC chr6:38712837-38712937 - 20 9.02e-06 ACATCTCAAA CCACAGGGGAGACAA AGAGCACTAA chr13:99554959-99555059 - 27 1.08e-05 AGACTGCATG GCTGTTGAGACGGAG CCATTTGCCA chr12:73242011-73242111 - 62 1.18e-05 TGAGTTGCAC CCAGTGCTGAGAGTG AGCTTTGGGG chr4:86810501-86810601 + 77 1.28e-05 cagggaaatc ccacagaagaggggg aggaatggt chr4:125257821-125257921 + 15 1.39e-05 CCAGCCCCTG GCACTGCAGTCGGTG GCTCCATGCT chr13:59252501-59252601 - 21 1.52e-05 GACCAGGCAG GCAGTGGAGAGAGGA GACCAGGCAG chr2:149929973-149930073 + 31 2.07e-05 CCACTGTATC ACAGTGAAGGGAGAG CTACATCTAT chr18:39323686-39323786 + 58 2.07e-05 GCTTATTTTT ACTCTGTAGACAGAA TGACTATGTT chr13:37312506-37312606 + 68 2.23e-05 GACTCGAGCA GGTGTGGGGAGACCA GAGGAATGAT chr16:50732538-50732638 - 77 2.57e-05 GCAGCCAAA GCTAAGCGGTGGGCG TGACCTGCTC chr4:65834034-65834134 - 50 2.57e-05 CTGAAAGTTC ACTTTGAGGACACAG TTTGTCTTCT chr1:72746298-72746398 - 48 2.57e-05 GTAGGCCAGC CCTGCGATGGGGGAG AAGTGTAGGG chr7:64003785-64003885 - 77 3.16e-05 ATCCTCCAC GCTGAGATGTGACCA GATGGCTCAT chr19:45326440-45326540 + 4 3.16e-05 TGA CGTCAGAAGAGGGTG GGGGTAGGGT chr2:179586348-179586448 - 15 3.16e-05 ACCTGGAGCC ACAGTGTTGAGGGTG GGTGGCCTGC chr18:59385576-59385676 + 66 4.09e-05 GTGAAACAAC ACGCTGCAGACGGAA GTCTCCTGTT chr17:10976153-10976253 - 58 4.36e-05 CTGGCTCTGA GCTCCTGAGAGGGAA CACAACACAC chr3:81782934-81783034 + 81 5.20e-05 ttgatgtgag cctatgaggtcaccg cgtcc chr4:85162676-85162776 + 44 1.96e-04 TAAAAGCCTA GCGTCGCGGACGCCA GTGAACACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTSTGVRGAGRSMG MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:112840685-11284078 8.6e-09 8_[+7]_77 chr10:95264411-95264511 2.3e-08 69_[+7]_16 chr15:82964299-82964399 3.6e-08 49_[-7]_36 chr4:155144192-155144292 6e-08 37_[+7]_48 chr15:35766305-35766405 3.2e-07 26_[+7]_59 chr14:99491603-99491703 3.2e-07 18_[-7]_67 chr7:113961501-113961601 4e-07 12_[+7]_73 chr13:25727456-25727556 7.4e-07 30_[+7]_55 chr13:36444632-36444732 8.9e-07 57_[+7]_28 chr3:108492899-108492999 8.9e-07 63_[-7]_22 chr15:72516977-72517077 1e-06 70_[-7]_15 chr13:103564151-10356425 1.1e-06 28_[+7]_57 chr10:126926978-12692707 1.1e-06 79_[-7]_6 chr4:32306327-32306427 1.5e-06 12_[+7]_73 chr2:34646184-34646284 1.8e-06 22_[-7]_63 chr3:28144620-28144720 1.8e-06 42_[+7]_43 chr13:57837670-57837770 2e-06 13_[-7]_72 chr16:92738222-92738322 2.2e-06 77_[-7]_8 chr5:44756225-44756325 2.5e-06 37_[-7]_48 chr3:51749966-51750066 2.8e-06 16_[-7]_69 chr7:3460298-3460398 3.3e-06 69_[+7]_16 chr6:32353792-32353892 3.3e-06 14_[+7]_71 chr13:56112922-56113022 3.7e-06 24_[+7]_61 chr3:104675322-104675422 5e-06 20_[+7]_65 chr2:122666226-122666326 5.6e-06 60_[-7]_25 chr1:33946985-33947085 7.4e-06 52_[-7]_33 chr11:25849353-25849453 7.4e-06 3_[+7]_82 chr2:69015291-69015391 7.4e-06 2_[-7]_83 chr1:89525817-89525917 8.2e-06 72_[-7]_13 chr6:38712837-38712937 9e-06 19_[-7]_66 chr13:99554959-99555059 1.1e-05 26_[-7]_59 chr12:73242011-73242111 1.2e-05 61_[-7]_24 chr4:86810501-86810601 1.3e-05 76_[+7]_9 chr4:125257821-125257921 1.4e-05 14_[+7]_71 chr13:59252501-59252601 1.5e-05 20_[-7]_65 chr2:149929973-149930073 2.1e-05 30_[+7]_55 chr18:39323686-39323786 2.1e-05 57_[+7]_28 chr13:37312506-37312606 2.2e-05 67_[+7]_18 chr16:50732538-50732638 2.6e-05 76_[-7]_9 chr4:65834034-65834134 2.6e-05 49_[-7]_36 chr1:72746298-72746398 2.6e-05 47_[-7]_38 chr7:64003785-64003885 3.2e-05 76_[-7]_9 chr19:45326440-45326540 3.2e-05 3_[+7]_82 chr2:179586348-179586448 3.2e-05 14_[-7]_71 chr18:59385576-59385676 4.1e-05 65_[+7]_20 chr17:10976153-10976253 4.4e-05 57_[-7]_28 chr3:81782934-81783034 5.2e-05 80_[+7]_5 chr4:85162676-85162776 0.0002 43_[+7]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTSTGVRGAGRSMG MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCTSTGVRGAGRSMG width=15 seqs=48 chr13:112840685-11284078 ( 9) GCTGTGAGGAGGCAG 1 chr10:95264411-95264511 ( 70) GCTCTGCGGAGGCCG 1 chr15:82964299-82964399 ( 50) CCTGTGAGGAGGCAG 1 chr4:155144192-155144292 ( 38) GCTCAGGGGAGGGAG 1 chr15:35766305-35766405 ( 27) GCTGTGAGGACAGAG 1 chr14:99491603-99491703 ( 19) GCTCTGAGGTGGCAG 1 chr7:113961501-113961601 ( 13) CCTCTGCAGAGGCTG 1 chr13:25727456-25727556 ( 31) CCTCTGAGGAGGGCA 1 chr13:36444632-36444732 ( 58) CCTGTGAAGACACAG 1 chr3:108492899-108492999 ( 64) CCTCTGCTGAGGGCG 1 chr15:72516977-72517077 ( 71) GCTCTGCAGTGACAG 1 chr13:103564151-10356425 ( 29) ACTGTGGAGAGGGTG 1 chr10:126926978-12692707 ( 80) CCTCTGGGGAGGCGG 1 chr4:32306327-32306427 ( 13) CCACAGGAGAGGCAG 1 chr2:34646184-34646284 ( 23) GCTGAGTGGAGAGAG 1 chr3:28144620-28144720 ( 43) GCAGTGAGGAGGCCA 1 chr13:57837670-57837770 ( 14) GCTCTGTGGAGACTG 1 chr16:92738222-92738322 ( 78) GCAGCGGAGAGGCAG 1 chr5:44756225-44756325 ( 38) ACTGTGCAGAGGGCA 1 chr3:51749966-51750066 ( 17) CCTCAGCAGACACAG 1 chr7:3460298-3460398 ( 70) GCTCTGGGGTGAGAA 1 chr6:32353792-32353892 ( 15) GCTCAGAAGAGGGTA 1 chr13:56112922-56113022 ( 25) GCTGTGGGGGCGGCG 1 chr3:104675322-104675422 ( 21) GCTCCGTAGAGACAG 1 chr2:122666226-122666326 ( 61) CCTCAGCTGAGGCTG 1 chr1:33946985-33947085 ( 53) GCTGAGCAGGCGCAG 1 chr11:25849353-25849453 ( 4) GCTGAGGAGTCACAG 1 chr2:69015291-69015391 ( 3) ACAGTGGTGAGGGCG 1 chr1:89525817-89525917 ( 73) GCAGTGGGGACAGCA 1 chr6:38712837-38712937 ( 20) CCACAGGGGAGACAA 1 chr13:99554959-99555059 ( 27) GCTGTTGAGACGGAG 1 chr12:73242011-73242111 ( 62) CCAGTGCTGAGAGTG 1 chr4:86810501-86810601 ( 77) CCACAGAAGAGGGGG 1 chr4:125257821-125257921 ( 15) GCACTGCAGTCGGTG 1 chr13:59252501-59252601 ( 21) GCAGTGGAGAGAGGA 1 chr2:149929973-149930073 ( 31) ACAGTGAAGGGAGAG 1 chr18:39323686-39323786 ( 58) ACTCTGTAGACAGAA 1 chr13:37312506-37312606 ( 68) GGTGTGGGGAGACCA 1 chr16:50732538-50732638 ( 77) GCTAAGCGGTGGGCG 1 chr4:65834034-65834134 ( 50) ACTTTGAGGACACAG 1 chr1:72746298-72746398 ( 48) CCTGCGATGGGGGAG 1 chr7:64003785-64003885 ( 77) GCTGAGATGTGACCA 1 chr19:45326440-45326540 ( 4) CGTCAGAAGAGGGTG 1 chr2:179586348-179586448 ( 15) ACAGTGTTGAGGGTG 1 chr18:59385576-59385676 ( 66) ACGCTGCAGACGGAA 1 chr17:10976153-10976253 ( 58) GCTCCTGAGAGGGAA 1 chr3:81782934-81783034 ( 81) CCTATGAGGTCACCG 1 chr4:85162676-85162776 ( 44) GCGTCGCGGACGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTSTGVRGAGRSMG MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.169 E= 1.3e-002 -70 45 118 -1223 -1223 206 -246 -1223 -12 -1223 -246 139 -270 100 100 -270 0 -114 -1223 121 -1223 -1223 206 -270 21 24 45 -138 69 -1223 86 -89 -1223 -1223 213 -1223 147 -1223 -146 -70 -1223 35 163 -1223 55 -1223 140 -1223 -1223 106 118 -1223 82 24 -187 -53 11 -1223 163 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTSTGVRGAGRSMG MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 48 E= 1.3e-002 0.166667 0.312500 0.520833 0.000000 0.000000 0.958333 0.041667 0.000000 0.250000 0.000000 0.041667 0.708333 0.041667 0.458333 0.458333 0.041667 0.270833 0.104167 0.000000 0.625000 0.000000 0.000000 0.958333 0.041667 0.312500 0.270833 0.312500 0.104167 0.437500 0.000000 0.416667 0.145833 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.083333 0.166667 0.000000 0.291667 0.708333 0.000000 0.395833 0.000000 0.604167 0.000000 0.000000 0.479167 0.520833 0.000000 0.479167 0.270833 0.062500 0.187500 0.291667 0.000000 0.708333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTSTGVRGAGRSMG MEME-7 regular expression -------------------------------------------------------------------------------- [GC]C[TA][CG][TA]G[AGC][AG]GA[GC][GA][GC][AC][GA] -------------------------------------------------------------------------------- Time 3184.00 secs. ******************************************************************************** ******************************************************************************** MOTIF SCATCTGT MEME-8 width = 8 sites = 114 llr = 935 E-value = 2.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCATCTGT MEME-8 Description -------------------------------------------------------------------------------- Simplified A 1:a:3::: pos.-specific C 5a::7::1 probability G 4::3::a3 matrix T :::7:a:6 bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** *** Entropy 1.1 ****** (11.8 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCATCTGT consensus G GA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCATCTGT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr18:71361719-71361819 + 52 1.48e-05 CAGATGGTCA CCATCTGT TACACAGAGC chr15:32324050-32324150 + 70 1.48e-05 CTGGGCCATT CCATCTGT AGTCTGGGAA chr11:24481479-24481579 + 37 1.48e-05 GTGGACTTTT CCATCTGT AGTGAGGCAC chr4:40875849-40875949 + 55 1.48e-05 CCACAGGATA CCATCTGT CTCTCATACG chr5:63624077-63624177 - 45 1.48e-05 ATGCAGGATA CCATCTGT TTCAGGGAAG chr16:96634055-96634155 + 21 1.48e-05 CTTCCACCTG CCATCTGT TCTGTGAGAA chr15:35766305-35766405 + 54 1.48e-05 GGTAAATCAA CCATCTGT TTTCCCCACA chr9:108235341-108235441 + 41 1.48e-05 GCAGAACCAG CCATCTGT TCAATTCTCT chr2:169142083-169142183 + 77 1.48e-05 GACATAACAC CCATCTGT GCTTTTGAGC chr9:101160049-101160149 + 22 1.48e-05 cactgagaca ccatctgt gtgagcccca chr6:53741123-53741223 - 83 1.48e-05 ACCCAGAGCT CCATCTGT TTAAGAATGT chr13:43592331-43592431 - 2 1.48e-05 AGATTGTTTT CCATCTGT T chr10:91546962-91547062 - 54 1.48e-05 ACCTGTCCTC CCATCTGT CTGGAAAGAT chr13:46363418-46363518 + 56 1.48e-05 GGCTGTTCAG CCATCTGT TTGCAACGCT chr17:90999780-90999880 - 13 1.48e-05 GGAGCCGAGG CCATCTGT TTTTTAAAAA chr7:131817790-131817890 + 17 1.48e-05 TTGCTTCAGA CCATCTGT GAGCACTTGC chr9:48111272-48111372 - 76 2.97e-05 TATGGCTCTG GCATCTGT TGTCAGATCA chr9:79003588-79003688 + 23 2.97e-05 AGGCAAGAAG GCATCTGT TGCTCTCAAG chr19:45326440-45326540 + 74 2.97e-05 GCTCTGATCA GCATCTGT AGCCTCACAC chr16:96907856-96907956 - 19 2.97e-05 TTGCAAGTAC GCATCTGT GGGAAGGGAA chrX:70820446-70820546 - 38 2.97e-05 TGTTAGTTTA GCATCTGT GCTTTTCCCT chr10:110391975-11039207 - 33 2.97e-05 GATCACGTTG GCATCTGT GGGTCTGTGC chr2:61668202-61668302 - 1 2.97e-05 CATGACTGAA GCATCTGT chr14:99491603-99491703 + 45 2.97e-05 ggcactgcag gcatctgt atctgcacct chr9:76419338-76419438 + 19 4.22e-05 GTAGGCATTT CCATCTGG ATCAGCAGCC chr4:65834034-65834134 + 5 4.22e-05 AGGC CCATCTGG CCTACACCAG chr4:125462080-125462180 - 54 4.22e-05 CGGCTCTCAC CCATCTGG TGGTTCATAA chr10:69653201-69653301 - 44 4.22e-05 AGGTTAGCAC CCATCTGG GAGCACCTGG chr2:160433190-160433290 - 26 4.22e-05 CTTCAGTAGG CCATCTGG ACCAGGAGCT chr1:105327194-105327294 + 49 4.22e-05 CACTGTGATT CCATCTGG GGCCCGCCCA chr10:7870514-7870614 + 69 4.22e-05 CCCAGAGGCT CCATCTGG AAGGAGGTTT chr14:19949469-19949569 - 8 4.22e-05 AGCTGGTGAG CCATCTGG TCTTAAG chr13:48694704-48694804 + 71 4.22e-05 AGGAGGTGGC CCATCTGG CGGCTGGCTC chr14:54110723-54110823 + 67 4.22e-05 ACACCCCAAG CCATCTGG TATCCATCAC chr9:70902753-70902853 - 25 4.22e-05 CTTTTCCTGC CCATCTGG CAGTCAATGC chr17:27293828-27293928 + 24 6.73e-05 TAGCTCTTTG CCAGCTGT AGAAGAGCTA chr11:96645440-96645540 + 12 6.73e-05 TCCATCGGAG GCATCTGG GGCTGCTTTG chr11:12596907-12597007 + 11 6.73e-05 CAAGAATCAG CCAGCTGT ATAGGATATG chr12:106302926-10630302 + 63 6.73e-05 AAGACACAGC CCAGCTGT CAACAAAGAT chr1:79400778-79400878 + 62 6.73e-05 AAAAAAAAAT CCAGCTGT ACAGAGCTGA chr6:98525238-98525338 - 32 6.73e-05 GAGATTCATG GCATCTGG GGGGAAGTGA chr1:171791446-171791546 - 42 6.73e-05 CTTTTATTCT CCAGCTGT CTTCACTCAC chr6:54156988-54157088 + 75 6.73e-05 CCCATACTGA GCATCTGG TGTGTAGTTA chr3:76106484-76106584 - 74 6.73e-05 GGCCTCACTA CCAGCTGT ATAGAAAACC chr13:107209822-10720992 - 80 6.73e-05 TTTCTCTGGA GCATCTGG AAACTCAAGT chrX:162521815-162521915 + 9 6.73e-05 ATTGGGGC CCAGCTGT GAAACACCTG chr19:59052655-59052755 + 48 6.73e-05 TCTCTCAACC CCAGCTGT GCTCTCTCAG chr7:111367231-111367331 + 20 6.73e-05 TGTTCTGTTG GCATCTGG TATGAGAAGA chr2:173057637-173057737 - 57 6.73e-05 GCTACCAAAG CCAGCTGT GGGGTTTAAA chr18:9414002-9414102 - 36 9.74e-05 TCCCAGATCA CCATATGT ACGCTGATGT chr15:70163343-70163443 + 80 9.74e-05 CTGACGTGGC CCATATGT GAACCACCTC chr10:59011402-59011502 + 84 9.74e-05 CCGTGATTTT GCAGCTGT GATCCGGGG chr15:72809748-72809848 + 43 9.74e-05 TGGAATGCAG GCAGCTGT GACGCAGTCT chr12:95772920-95773020 + 74 9.74e-05 ATCAGCTATT CCATATGT CCATACATCT chr4:125824477-125824577 + 62 9.74e-05 TCCCATAGGA GCAGCTGT CGGCATGTGC chr2:47301094-47301194 - 61 9.74e-05 GTGGTACAGC CCATATGT CTTTCCCTGC chr13:76940739-76940839 + 23 9.74e-05 CAAACCAGAG GCAGCTGT TAGGTATGAC chr18:17205460-17205560 + 66 9.74e-05 TGCTGGTTTC CCATATGT TCTTGTTCTC chr12:73242011-73242111 - 6 9.74e-05 GTCCAGCCTA GCAGCTGT GGCAA chr9:42707848-42707948 + 29 9.74e-05 aactgagata ccatatgt cccagcatat chr1:169257763-169257863 - 57 1.15e-04 TATACACTGA GCATATGT CTCTTCCTGT chr1:192244399-192244499 - 7 1.15e-04 GCACACATAT GCATATGT CCCCAT chr1:193447629-193447729 - 74 1.15e-04 GCTCGTACAT GCATATGT CTGCACGGTC chr11:7094619-7094719 - 46 1.15e-04 ATGTTCTCCT GCATATGT AGATGTTAGC chr2:14846620-14846720 + 54 1.15e-04 acatgaatga gcatatgt ctctgtagca chr15:10680477-10680577 + 37 1.15e-04 AATTACATGA GCATATGT ACCAAGATGA chr15:94811052-94811152 - 12 1.15e-04 GTATGAATAT GCATATGT GTGCATGCAT chr3:131796679-131796779 + 36 1.15e-04 CTCATTCCTA GCATATGT TTGAGGTCTG chr8:68642238-68642338 + 31 1.15e-04 AACAAGAAAA GCATATGT TCTCCTAGTG chr12:106157742-10615784 + 26 1.15e-04 ATATGAGTAA GCATATGT TGTGTGAGTG chr2:124293501-124293601 + 73 1.15e-04 AGGGACCTGG GCATATGT TCTAACCCTG chr2:62804184-62804284 + 79 1.15e-04 TTTTTTAAGA GCATATGT TGAAAATGTA chr13:59204482-59204582 + 75 1.38e-04 TTCCTGAGCC CCAGCTGG TGCTAACAGA chr14:121286040-12128614 + 55 1.38e-04 AACAGGTGCC CCATCTGC TCCGTGGAGC chr17:61042728-61042828 + 23 1.38e-04 cctttgcact ccagctgg ctgctttaac chr19:58829633-58829733 + 70 1.38e-04 AGGAATAGCT CCATCTGC TTAATCGCTT chr10:60133450-60133550 + 6 1.38e-04 tccCT CCAGCTGG AGTTACTTGA chr9:77390931-77391031 + 15 1.38e-04 GAGCTTTGTA CCAGCTGG GTGTATCATC chr13:69715614-69715714 - 19 1.38e-04 GGGTTAGAAA CCATCTGC AGAGGGAACT chr2:104305659-104305759 + 75 1.38e-04 AGCAGGCCCT CCAGCTGG CAGCCTTCTC chr2:148634388-148634488 + 42 1.38e-04 GTCTGACTTG CCATCTGC CTCTCAGAAA chr9:115143039-115143139 + 74 1.38e-04 cctcatactt ccatctgc catctcctct chrX:162257155-162257255 - 37 1.38e-04 GACTTGGATG CCATCTGC CCCAGAGTTC chr15:31510472-31510572 + 82 1.38e-04 ACCCTGCCCT CCATCTGC TGAGGCCAGC chr1:188420542-188420642 + 3 1.76e-04 AA CCATATGG GTTCTTATAT chr16:27979518-27979618 - 77 1.76e-04 GGGTCTGGTG GCATCTGC ATATCTGCTA chr5:126680218-126680318 + 5 1.76e-04 TTGT GCATCTGC CCTGTGCGTA chr3:85188944-85189044 + 31 1.76e-04 GTTCAGGAAA GCAGCTGG TTACTCTGGT chr4:16852573-16852673 + 2 1.76e-04 T GCAGCTGG CAAAGAGAGA chr6:126581690-126581790 + 34 1.76e-04 ttctgtgtgt gcatctgc cattgcctgg chr2:42545997-42546097 - 64 1.76e-04 CTATACTGCT GCAGCTGG TACCTAGCAT chr13:102745663-10274576 + 23 1.76e-04 tctatttata gcatctgc ctcagagaag chr10:69495619-69495719 + 56 1.76e-04 CGTATGCCTG GCAGCTGG TGCTCAGCAC chr5:51783087-51783187 + 27 1.76e-04 TGGGAGGGGA CCATATGG TCCTACATCC chr18:62803927-62804027 + 8 1.76e-04 AATGTTA GCATCTGC TGTCTACCAA chr13:106723301-10672340 - 76 2.06e-04 CCCATTTCTG CCAGATGT ATTTCTGGTT chr7:64003785-64003885 - 44 2.06e-04 ATAGACTCAA CCAGATGT CCTATGAGAA chr18:51255667-51255767 - 20 2.06e-04 ATGGGTCCCT GCATATGG CAATCACTAG chr3:137211715-137211815 + 78 2.06e-04 TTTGCTTATG GCATATGG AGCTTAAAGT chr6:76382261-76382361 + 73 2.06e-04 AGAGAAGAGT GCATATGG AATGAAAAGT chr4:127635177-127635277 + 9 2.06e-04 TCTGCACT CCAGATGT TGAGCATAAC chr4:31923519-31923619 + 34 2.06e-04 TTCACTACCT CCAGATGT AAAAGCCACA chr19:14375773-14375873 + 45 2.20e-04 TCCAAAACAA GCAGATGT ACTAGGCTCA chrX:61994650-61994750 - 28 2.20e-04 CCTCCTGGCT GCAGATGT AGCCACCTTA chr6:33096719-33096819 + 65 2.20e-04 ACTGAAAACC GCAGATGT TCCTCCACTG chr19:21525663-21525763 - 21 2.20e-04 AAACCTACAA GCAGATGT CTTCTACATG chr6:102515282-102515382 - 80 2.38e-04 GAAAGCAGAA ACATCTGT GGTTTGGCAA chrX:86900238-86900338 + 53 2.38e-04 CATCTTCCAA ACATCTGT TTCAACCAAA chr2:180897343-180897443 - 59 2.38e-04 GGAGCTAGGG ACATCTGT ACCTAAGCTC chr13:117746287-11774638 + 30 2.38e-04 TGTCTTAACT ACATCTGT CTCTGGCTGT chr17:10976153-10976253 - 31 2.38e-04 CAGAGGTACC ACATCTGT TCTGGTTGCT chr2:138859047-138859147 + 83 3.14e-04 TGGGAGCTAA GCATATGC TGCAGAAGTG chr5:44756225-44756325 + 61 3.64e-04 GTCAATTGAA ACATATGT CCTCTACAGA chr2:169780171-169780271 + 6 3.64e-04 CTTGG ACATATGT GAAGACCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCATCTGT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:71361719-71361819 1.5e-05 51_[+8]_41 chr15:32324050-32324150 1.5e-05 69_[+8]_23 chr11:24481479-24481579 1.5e-05 36_[+8]_56 chr4:40875849-40875949 1.5e-05 54_[+8]_38 chr5:63624077-63624177 1.5e-05 44_[-8]_48 chr16:96634055-96634155 1.5e-05 20_[+8]_72 chr15:35766305-35766405 1.5e-05 53_[+8]_39 chr9:108235341-108235441 1.5e-05 40_[+8]_52 chr2:169142083-169142183 1.5e-05 76_[+8]_16 chr9:101160049-101160149 1.5e-05 21_[+8]_71 chr6:53741123-53741223 1.5e-05 82_[-8]_10 chr13:43592331-43592431 1.5e-05 1_[-8]_91 chr10:91546962-91547062 1.5e-05 53_[-8]_39 chr13:46363418-46363518 1.5e-05 55_[+8]_37 chr17:90999780-90999880 1.5e-05 12_[-8]_80 chr7:131817790-131817890 1.5e-05 16_[+8]_76 chr9:48111272-48111372 3e-05 75_[-8]_17 chr9:79003588-79003688 3e-05 22_[+8]_70 chr19:45326440-45326540 3e-05 73_[+8]_19 chr16:96907856-96907956 3e-05 18_[-8]_74 chrX:70820446-70820546 3e-05 37_[-8]_55 chr10:110391975-11039207 3e-05 32_[-8]_60 chr2:61668202-61668302 3e-05 [-8]_92 chr14:99491603-99491703 3e-05 44_[+8]_48 chr9:76419338-76419438 4.2e-05 18_[+8]_74 chr4:65834034-65834134 4.2e-05 4_[+8]_88 chr4:125462080-125462180 4.2e-05 53_[-8]_39 chr10:69653201-69653301 4.2e-05 43_[-8]_49 chr2:160433190-160433290 4.2e-05 25_[-8]_67 chr1:105327194-105327294 4.2e-05 48_[+8]_44 chr10:7870514-7870614 4.2e-05 68_[+8]_24 chr14:19949469-19949569 4.2e-05 7_[-8]_85 chr13:48694704-48694804 4.2e-05 70_[+8]_22 chr14:54110723-54110823 4.2e-05 66_[+8]_26 chr9:70902753-70902853 4.2e-05 24_[-8]_68 chr17:27293828-27293928 6.7e-05 23_[+8]_69 chr11:96645440-96645540 6.7e-05 11_[+8]_81 chr11:12596907-12597007 6.7e-05 10_[+8]_82 chr12:106302926-10630302 6.7e-05 62_[+8]_30 chr1:79400778-79400878 6.7e-05 61_[+8]_31 chr6:98525238-98525338 6.7e-05 31_[-8]_61 chr1:171791446-171791546 6.7e-05 41_[-8]_51 chr6:54156988-54157088 6.7e-05 74_[+8]_18 chr3:76106484-76106584 6.7e-05 73_[-8]_19 chr13:107209822-10720992 6.7e-05 79_[-8]_13 chrX:162521815-162521915 6.7e-05 8_[+8]_84 chr19:59052655-59052755 6.7e-05 47_[+8]_45 chr7:111367231-111367331 6.7e-05 19_[+8]_73 chr2:173057637-173057737 6.7e-05 56_[-8]_36 chr18:9414002-9414102 9.7e-05 35_[-8]_57 chr15:70163343-70163443 9.7e-05 79_[+8]_13 chr10:59011402-59011502 9.7e-05 83_[+8]_9 chr15:72809748-72809848 9.7e-05 42_[+8]_50 chr12:95772920-95773020 9.7e-05 73_[+8]_19 chr4:125824477-125824577 9.7e-05 61_[+8]_31 chr2:47301094-47301194 9.7e-05 60_[-8]_32 chr13:76940739-76940839 9.7e-05 22_[+8]_70 chr18:17205460-17205560 9.7e-05 65_[+8]_27 chr12:73242011-73242111 9.7e-05 5_[-8]_87 chr9:42707848-42707948 9.7e-05 28_[+8]_64 chr1:169257763-169257863 0.00011 56_[-8]_36 chr1:192244399-192244499 0.00011 6_[-8]_86 chr1:193447629-193447729 0.00011 73_[-8]_19 chr11:7094619-7094719 0.00011 45_[-8]_47 chr2:14846620-14846720 0.00011 53_[+8]_39 chr15:10680477-10680577 0.00011 36_[+8]_56 chr15:94811052-94811152 0.00011 11_[-8]_81 chr3:131796679-131796779 0.00011 35_[+8]_57 chr8:68642238-68642338 0.00011 30_[+8]_62 chr12:106157742-10615784 0.00011 25_[+8]_67 chr2:124293501-124293601 0.00011 72_[+8]_20 chr2:62804184-62804284 0.00011 78_[+8]_14 chr13:59204482-59204582 0.00014 74_[+8]_18 chr14:121286040-12128614 0.00014 54_[+8]_38 chr17:61042728-61042828 0.00014 22_[+8]_70 chr19:58829633-58829733 0.00014 69_[+8]_23 chr10:60133450-60133550 0.00014 5_[+8]_87 chr9:77390931-77391031 0.00014 14_[+8]_78 chr13:69715614-69715714 0.00014 18_[-8]_74 chr2:104305659-104305759 0.00014 74_[+8]_18 chr2:148634388-148634488 0.00014 41_[+8]_51 chr9:115143039-115143139 0.00014 73_[+8]_19 chrX:162257155-162257255 0.00014 36_[-8]_56 chr15:31510472-31510572 0.00014 81_[+8]_11 chr1:188420542-188420642 0.00018 2_[+8]_90 chr16:27979518-27979618 0.00018 76_[-8]_16 chr5:126680218-126680318 0.00018 4_[+8]_88 chr3:85188944-85189044 0.00018 30_[+8]_62 chr4:16852573-16852673 0.00018 1_[+8]_91 chr6:126581690-126581790 0.00018 33_[+8]_59 chr2:42545997-42546097 0.00018 63_[-8]_29 chr13:102745663-10274576 0.00018 22_[+8]_70 chr10:69495619-69495719 0.00018 55_[+8]_37 chr5:51783087-51783187 0.00018 26_[+8]_66 chr18:62803927-62804027 0.00018 7_[+8]_85 chr13:106723301-10672340 0.00021 75_[-8]_17 chr7:64003785-64003885 0.00021 43_[-8]_49 chr18:51255667-51255767 0.00021 19_[-8]_73 chr3:137211715-137211815 0.00021 77_[+8]_15 chr6:76382261-76382361 0.00021 72_[+8]_20 chr4:127635177-127635277 0.00021 8_[+8]_84 chr4:31923519-31923619 0.00021 33_[+8]_59 chr19:14375773-14375873 0.00022 44_[+8]_48 chrX:61994650-61994750 0.00022 27_[-8]_65 chr6:33096719-33096819 0.00022 64_[+8]_28 chr19:21525663-21525763 0.00022 20_[-8]_72 chr6:102515282-102515382 0.00024 79_[-8]_13 chrX:86900238-86900338 0.00024 52_[+8]_40 chr2:180897343-180897443 0.00024 58_[-8]_34 chr13:117746287-11774638 0.00024 29_[+8]_63 chr17:10976153-10976253 0.00024 30_[-8]_62 chr2:138859047-138859147 0.00031 82_[+8]_10 chr5:44756225-44756325 0.00036 60_[+8]_32 chr2:169780171-169780271 0.00036 5_[+8]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCATCTGT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCATCTGT width=8 seqs=114 chr18:71361719-71361819 ( 52) CCATCTGT 1 chr15:32324050-32324150 ( 70) CCATCTGT 1 chr11:24481479-24481579 ( 37) CCATCTGT 1 chr4:40875849-40875949 ( 55) CCATCTGT 1 chr5:63624077-63624177 ( 45) CCATCTGT 1 chr16:96634055-96634155 ( 21) CCATCTGT 1 chr15:35766305-35766405 ( 54) CCATCTGT 1 chr9:108235341-108235441 ( 41) CCATCTGT 1 chr2:169142083-169142183 ( 77) CCATCTGT 1 chr9:101160049-101160149 ( 22) CCATCTGT 1 chr6:53741123-53741223 ( 83) CCATCTGT 1 chr13:43592331-43592431 ( 2) CCATCTGT 1 chr10:91546962-91547062 ( 54) CCATCTGT 1 chr13:46363418-46363518 ( 56) CCATCTGT 1 chr17:90999780-90999880 ( 13) CCATCTGT 1 chr7:131817790-131817890 ( 17) CCATCTGT 1 chr9:48111272-48111372 ( 76) GCATCTGT 1 chr9:79003588-79003688 ( 23) GCATCTGT 1 chr19:45326440-45326540 ( 74) GCATCTGT 1 chr16:96907856-96907956 ( 19) GCATCTGT 1 chrX:70820446-70820546 ( 38) GCATCTGT 1 chr10:110391975-11039207 ( 33) GCATCTGT 1 chr2:61668202-61668302 ( 1) GCATCTGT 1 chr14:99491603-99491703 ( 45) GCATCTGT 1 chr9:76419338-76419438 ( 19) CCATCTGG 1 chr4:65834034-65834134 ( 5) CCATCTGG 1 chr4:125462080-125462180 ( 54) CCATCTGG 1 chr10:69653201-69653301 ( 44) CCATCTGG 1 chr2:160433190-160433290 ( 26) CCATCTGG 1 chr1:105327194-105327294 ( 49) CCATCTGG 1 chr10:7870514-7870614 ( 69) CCATCTGG 1 chr14:19949469-19949569 ( 8) CCATCTGG 1 chr13:48694704-48694804 ( 71) CCATCTGG 1 chr14:54110723-54110823 ( 67) CCATCTGG 1 chr9:70902753-70902853 ( 25) CCATCTGG 1 chr17:27293828-27293928 ( 24) CCAGCTGT 1 chr11:96645440-96645540 ( 12) GCATCTGG 1 chr11:12596907-12597007 ( 11) CCAGCTGT 1 chr12:106302926-10630302 ( 63) CCAGCTGT 1 chr1:79400778-79400878 ( 62) CCAGCTGT 1 chr6:98525238-98525338 ( 32) GCATCTGG 1 chr1:171791446-171791546 ( 42) CCAGCTGT 1 chr6:54156988-54157088 ( 75) GCATCTGG 1 chr3:76106484-76106584 ( 74) CCAGCTGT 1 chr13:107209822-10720992 ( 80) GCATCTGG 1 chrX:162521815-162521915 ( 9) CCAGCTGT 1 chr19:59052655-59052755 ( 48) CCAGCTGT 1 chr7:111367231-111367331 ( 20) GCATCTGG 1 chr2:173057637-173057737 ( 57) CCAGCTGT 1 chr18:9414002-9414102 ( 36) CCATATGT 1 chr15:70163343-70163443 ( 80) CCATATGT 1 chr10:59011402-59011502 ( 84) GCAGCTGT 1 chr15:72809748-72809848 ( 43) GCAGCTGT 1 chr12:95772920-95773020 ( 74) CCATATGT 1 chr4:125824477-125824577 ( 62) GCAGCTGT 1 chr2:47301094-47301194 ( 61) CCATATGT 1 chr13:76940739-76940839 ( 23) GCAGCTGT 1 chr18:17205460-17205560 ( 66) CCATATGT 1 chr12:73242011-73242111 ( 6) GCAGCTGT 1 chr9:42707848-42707948 ( 29) CCATATGT 1 chr1:169257763-169257863 ( 57) GCATATGT 1 chr1:192244399-192244499 ( 7) GCATATGT 1 chr1:193447629-193447729 ( 74) GCATATGT 1 chr11:7094619-7094719 ( 46) GCATATGT 1 chr2:14846620-14846720 ( 54) GCATATGT 1 chr15:10680477-10680577 ( 37) GCATATGT 1 chr15:94811052-94811152 ( 12) GCATATGT 1 chr3:131796679-131796779 ( 36) GCATATGT 1 chr8:68642238-68642338 ( 31) GCATATGT 1 chr12:106157742-10615784 ( 26) GCATATGT 1 chr2:124293501-124293601 ( 73) GCATATGT 1 chr2:62804184-62804284 ( 79) GCATATGT 1 chr13:59204482-59204582 ( 75) CCAGCTGG 1 chr14:121286040-12128614 ( 55) CCATCTGC 1 chr17:61042728-61042828 ( 23) CCAGCTGG 1 chr19:58829633-58829733 ( 70) CCATCTGC 1 chr10:60133450-60133550 ( 6) CCAGCTGG 1 chr9:77390931-77391031 ( 15) CCAGCTGG 1 chr13:69715614-69715714 ( 19) CCATCTGC 1 chr2:104305659-104305759 ( 75) CCAGCTGG 1 chr2:148634388-148634488 ( 42) CCATCTGC 1 chr9:115143039-115143139 ( 74) CCATCTGC 1 chrX:162257155-162257255 ( 37) CCATCTGC 1 chr15:31510472-31510572 ( 82) CCATCTGC 1 chr1:188420542-188420642 ( 3) CCATATGG 1 chr16:27979518-27979618 ( 77) GCATCTGC 1 chr5:126680218-126680318 ( 5) GCATCTGC 1 chr3:85188944-85189044 ( 31) GCAGCTGG 1 chr4:16852573-16852673 ( 2) GCAGCTGG 1 chr6:126581690-126581790 ( 34) GCATCTGC 1 chr2:42545997-42546097 ( 64) GCAGCTGG 1 chr13:102745663-10274576 ( 23) GCATCTGC 1 chr10:69495619-69495719 ( 56) GCAGCTGG 1 chr5:51783087-51783187 ( 27) CCATATGG 1 chr18:62803927-62804027 ( 8) GCATCTGC 1 chr13:106723301-10672340 ( 76) CCAGATGT 1 chr7:64003785-64003885 ( 44) CCAGATGT 1 chr18:51255667-51255767 ( 20) GCATATGG 1 chr3:137211715-137211815 ( 78) GCATATGG 1 chr6:76382261-76382361 ( 73) GCATATGG 1 chr4:127635177-127635277 ( 9) CCAGATGT 1 chr4:31923519-31923619 ( 34) CCAGATGT 1 chr19:14375773-14375873 ( 45) GCAGATGT 1 chrX:61994650-61994750 ( 28) GCAGATGT 1 chr6:33096719-33096819 ( 65) GCAGATGT 1 chr19:21525663-21525763 ( 21) GCAGATGT 1 chr6:102515282-102515382 ( 80) ACATCTGT 1 chrX:86900238-86900338 ( 53) ACATCTGT 1 chr2:180897343-180897443 ( 59) ACATCTGT 1 chr13:117746287-11774638 ( 30) ACATCTGT 1 chr17:10976153-10976253 ( 31) ACATCTGT 1 chr2:138859047-138859147 ( 83) GCATATGC 1 chr5:44756225-44756325 ( 61) ACATATGT 1 chr2:169780171-169780271 ( 6) ACATATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCATCTGT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.6133 E= 2.6e+000 -214 120 85 -1348 -1348 213 -1348 -1348 188 -1348 -1348 -1348 -1348 -1348 25 143 14 161 -1348 -1348 -1348 -1348 -1348 188 -1348 -1348 213 -1348 -1348 -101 20 120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCATCTGT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 114 E= 2.6e+000 0.061404 0.526316 0.412281 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.271930 0.728070 0.298246 0.701754 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.114035 0.263158 0.622807 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCATCTGT MEME-8 regular expression -------------------------------------------------------------------------------- [CG]CA[TG][CA]TG[TG] -------------------------------------------------------------------------------- Time 3602.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGGAASAGC MEME-9 width = 11 sites = 28 llr = 308 E-value = 3.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGGAASAGC MEME-9 Description -------------------------------------------------------------------------------- Simplified A :31::a9:81: pos.-specific C 8::::::51:9 probability G 3:9a8:15:91 matrix T :7::1:::1:: bits 2.1 * 1.9 * * 1.7 ** * * 1.5 ** ** ** Relative 1.3 * ***** ** Entropy 1.1 * ****** ** (15.9 bits) 0.9 *********** 0.6 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CTGGGAAGAGC consensus GA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGAASAGC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr15:32324050-32324150 + 81 1.78e-07 CATCTGTAGT CTGGGAAGAGC TTTAGTGCT chr18:77606402-77606502 + 37 1.78e-07 TGTGCAGGAG CTGGGAAGAGC AAAGTCGCCC chr10:7870514-7870614 - 13 1.78e-07 GGGAGAGACA CTGGGAAGAGC TCCCTCGGCT chr18:9414002-9414102 + 48 3.56e-07 ATATGGTGAT CTGGGAACAGC TTCCATGCTC chr2:61668202-61668302 + 76 3.56e-07 GTTTTCTCCT CTGGGAACAGC ACCTGGTCTT chr1:169421759-169421859 + 47 7.13e-07 GAAGAGAAGG CAGGGAAGAGC TCCAATCTGG chr8:11923040-11923140 + 54 7.13e-07 GACAGAGCAG GTGGGAAGAGC AGGTGCCAGC chr8:93591797-93591897 + 67 7.13e-07 AGAAAAGGGT GTGGGAAGAGC CAGGGGACCT chr3:85210493-85210593 - 31 1.07e-06 TGATACACAG CAGGGAACAGC GTGGGATGAA chr18:77255219-77255319 + 76 1.22e-06 GAGTCGCTGG CTGGGAAGCGC CTTGTCACGT chr16:97104147-97104247 + 30 3.16e-06 ATTCATAGAT CTGGGAACAGG CCAGCTATTT chr11:68216993-68217093 + 63 3.58e-06 AAAGTCAGAG CTGGGAAGAAC CCTTCCAGGC chr10:95475951-95476051 - 70 3.58e-06 AAAAGCAGCC CTAGGAAGAGC CGGAGAGGCT chr3:104663926-104664026 + 63 4.31e-06 AGTCCCAACC CTGGGAAGGGC ACAGTGAGGG chr8:124349681-124349781 + 71 4.91e-06 GCTGGCCAGA CCGGGAACAGC CTCACCCAGA chr5:52278727-52278827 - 15 5.63e-06 GATGTCTCAG CAGGTAAGAGC GCTGGCTGCT chr6:87214828-87214928 + 1 6.41e-06 . CAGGTAACAGC AAAGACAGAT chr2:140455099-140455199 + 26 6.41e-06 ACCAAATGTT CAGGTAACAGC TCTATTTACA chr15:77245906-77246006 - 82 6.76e-06 TGACAGGT GTGGGAACTGC TCCAGTTTCC chr12:99608195-99608295 + 66 6.76e-06 AGCACAAGGA GTGGGAACTGC AAAAATAGAC chr4:47598166-47598266 - 63 6.97e-06 AAGGGGGAAC CTGGAAAGAGC AAGGAGAGCA chr16:50732538-50732638 - 55 7.91e-06 GACCTGCTCT GTGGGAGGAGC CTTAAGGTAG chr12:16850945-16851045 + 54 8.21e-06 cagtgagcca cagggagcagc cagctttctc chr1:154688730-154688830 + 21 8.74e-06 AACATAGTGC CAGGGAAGAGG AGGAGACCTG chr13:36444632-36444732 + 7 1.03e-05 GAAAGG GTGGGAAGAAC TGAAGAGCTT chr15:10671713-10671813 - 9 1.18e-05 CTTGAGCTCC CTGGTAACTGC TCCGTGTG chr6:128759880-128759980 + 28 2.76e-05 gccgtgggtg ctgggaaccga actcttatat chr11:43634047-43634147 + 9 3.93e-05 ACTTCCGC GTAGGAACCGC CTGGGAAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGAASAGC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:32324050-32324150 1.8e-07 80_[+9]_9 chr18:77606402-77606502 1.8e-07 36_[+9]_53 chr10:7870514-7870614 1.8e-07 12_[-9]_77 chr18:9414002-9414102 3.6e-07 47_[+9]_42 chr2:61668202-61668302 3.6e-07 75_[+9]_14 chr1:169421759-169421859 7.1e-07 46_[+9]_43 chr8:11923040-11923140 7.1e-07 53_[+9]_36 chr8:93591797-93591897 7.1e-07 66_[+9]_23 chr3:85210493-85210593 1.1e-06 30_[-9]_59 chr18:77255219-77255319 1.2e-06 75_[+9]_14 chr16:97104147-97104247 3.2e-06 29_[+9]_60 chr11:68216993-68217093 3.6e-06 62_[+9]_27 chr10:95475951-95476051 3.6e-06 69_[-9]_20 chr3:104663926-104664026 4.3e-06 62_[+9]_27 chr8:124349681-124349781 4.9e-06 70_[+9]_19 chr5:52278727-52278827 5.6e-06 14_[-9]_75 chr6:87214828-87214928 6.4e-06 [+9]_89 chr2:140455099-140455199 6.4e-06 25_[+9]_64 chr15:77245906-77246006 6.8e-06 81_[-9]_8 chr12:99608195-99608295 6.8e-06 65_[+9]_24 chr4:47598166-47598266 7e-06 62_[-9]_27 chr16:50732538-50732638 7.9e-06 54_[-9]_35 chr12:16850945-16851045 8.2e-06 53_[+9]_36 chr1:154688730-154688830 8.7e-06 20_[+9]_69 chr13:36444632-36444732 1e-05 6_[+9]_83 chr15:10671713-10671813 1.2e-05 8_[-9]_81 chr6:128759880-128759980 2.8e-05 27_[+9]_62 chr11:43634047-43634147 3.9e-05 8_[+9]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGAASAGC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGGAASAGC width=11 seqs=28 chr15:32324050-32324150 ( 81) CTGGGAAGAGC 1 chr18:77606402-77606502 ( 37) CTGGGAAGAGC 1 chr10:7870514-7870614 ( 13) CTGGGAAGAGC 1 chr18:9414002-9414102 ( 48) CTGGGAACAGC 1 chr2:61668202-61668302 ( 76) CTGGGAACAGC 1 chr1:169421759-169421859 ( 47) CAGGGAAGAGC 1 chr8:11923040-11923140 ( 54) GTGGGAAGAGC 1 chr8:93591797-93591897 ( 67) GTGGGAAGAGC 1 chr3:85210493-85210593 ( 31) CAGGGAACAGC 1 chr18:77255219-77255319 ( 76) CTGGGAAGCGC 1 chr16:97104147-97104247 ( 30) CTGGGAACAGG 1 chr11:68216993-68217093 ( 63) CTGGGAAGAAC 1 chr10:95475951-95476051 ( 70) CTAGGAAGAGC 1 chr3:104663926-104664026 ( 63) CTGGGAAGGGC 1 chr8:124349681-124349781 ( 71) CCGGGAACAGC 1 chr5:52278727-52278827 ( 15) CAGGTAAGAGC 1 chr6:87214828-87214928 ( 1) CAGGTAACAGC 1 chr2:140455099-140455199 ( 26) CAGGTAACAGC 1 chr15:77245906-77246006 ( 82) GTGGGAACTGC 1 chr12:99608195-99608295 ( 66) GTGGGAACTGC 1 chr4:47598166-47598266 ( 63) CTGGAAAGAGC 1 chr16:50732538-50732638 ( 55) GTGGGAGGAGC 1 chr12:16850945-16851045 ( 54) CAGGGAGCAGC 1 chr1:154688730-154688830 ( 21) CAGGGAAGAGG 1 chr13:36444632-36444732 ( 7) GTGGGAAGAAC 1 chr15:10671713-10671813 ( 9) CTGGTAACTGC 1 chr6:128759880-128759980 ( 28) CTGGGAACCGA 1 chr11:43634047-43634147 ( 9) GTAGGAACCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGAASAGC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 10.7564 E= 3.8e+000 -1145 171 13 -1145 -12 -268 -1145 140 -192 -1145 202 -1145 -1145 -1145 213 -1145 -292 -1145 184 -92 188 -1145 -1145 -1145 178 -1145 -168 -1145 -1145 102 123 -1145 147 -110 -268 -134 -192 -1145 202 -1145 -292 196 -168 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGAASAGC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 28 E= 3.8e+000 0.000000 0.750000 0.250000 0.000000 0.250000 0.035714 0.000000 0.714286 0.071429 0.000000 0.928571 0.000000 0.000000 0.000000 1.000000 0.000000 0.035714 0.000000 0.821429 0.142857 1.000000 0.000000 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.000000 0.464286 0.535714 0.000000 0.750000 0.107143 0.035714 0.107143 0.071429 0.000000 0.928571 0.000000 0.035714 0.892857 0.071429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGAASAGC MEME-9 regular expression -------------------------------------------------------------------------------- [CG][TA]GGGAA[GC]AGC -------------------------------------------------------------------------------- Time 4005.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTGCCMTSC MEME-10 width = 11 sites = 22 llr = 249 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTGCCMTSC MEME-10 Description -------------------------------------------------------------------------------- Simplified A :::::::4::: pos.-specific C ::9:17a6:59 probability G 8a1:72:::5: matrix T 2::a2:::a:1 bits 2.1 * * 1.9 * * * * 1.7 *** * * * 1.5 *** * * * Relative 1.3 *** * * * Entropy 1.1 **** ***** (16.3 bits) 0.9 **** ****** 0.6 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GGCTGCCCTCC consensus G A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCMTSC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr12:83169689-83169789 + 12 1.27e-07 GGAGACCACT GGCTGCCCTCC TAATTCTCAG chr15:74325339-74325439 - 20 2.54e-07 CAGAACCCTG GGCTGCCCTGC TGCATGGAGG chr9:122592408-122592508 + 32 5.55e-07 CATCCCTGCA GGCTGCCATGC CTGCCTTGTT chr2:34646184-34646284 - 41 6.83e-07 GCCTTTCCCG GGCTGGCCTCC TGGGCTGAGT chr9:76419338-76419438 - 52 9.60e-07 GCTCACAGTT GGCTTCCCTCC ATTTCTCAGG chrX:71106439-71106539 - 61 9.60e-07 GCCTGTGTCT GGCTTCCCTCC CTGGTTGGGT chr10:126926978-12692707 + 66 9.60e-07 ACCTGTTGTT GGCTTCCCTCC AAACCGCCTC chr11:117610235-11761033 + 52 1.11e-06 AAGCATTTCC TGCTGCCCTCC TGCCCACAGC chr4:86024551-86024651 + 13 1.11e-06 GTCTGATAGG TGCTGCCCTCC AGGGGAGAGC chr14:29752886-29752986 + 40 1.84e-06 ATCTGTTTGA GGCTGGCATGC TTGTAGCAAC chr15:39659238-39659338 - 74 2.45e-06 CTGCTAGCCC GGGTGCCCTCC CTCGCTGGGA chr4:138551575-138551675 + 65 3.08e-06 cctgcccgtg tgctgccatgc ccccaccttc chr9:48670668-48670768 - 68 3.24e-06 GCTGCTTACT GGCTTGCCTCC ATGGCTCCAA chr7:143153766-143153866 - 1 3.54e-06 GCTCGTCAGA GGCTGCCCTGT chr15:10671713-10671813 - 33 3.84e-06 CAACCCCCTG GGCTCCCATCC ACCCTTGAGC chr13:42102989-42103089 + 70 5.75e-06 TAATGAGGAT GGCTGACCTGC CACGGCTGGT chr7:50441142-50441242 - 49 6.26e-06 GGAGAGATGT GGGTGCCATGC CTGTGCCTTC chr13:60488609-60488709 + 43 7.98e-06 TTAAGTGGAA CGCTGCCATCC ACCCACACCG chr3:28144620-28144720 - 15 8.52e-06 AATGGATGCT GGCTGTCATCC CAATCTCACT chr11:90271136-90271236 - 64 9.33e-06 GTACTGAGAC TGCTCCCCTGC GAGACCTTCC chr5:63624077-63624177 + 83 1.24e-05 GGCAGAGTAC GGCTAGCCTGC GAGTTGA chr2:173057637-173057737 + 78 1.52e-05 TGGTAGCAGC GGCTGGCATGT GTGTGTCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCMTSC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:83169689-83169789 1.3e-07 11_[+10]_78 chr15:74325339-74325439 2.5e-07 19_[-10]_70 chr9:122592408-122592508 5.6e-07 31_[+10]_58 chr2:34646184-34646284 6.8e-07 40_[-10]_49 chr9:76419338-76419438 9.6e-07 51_[-10]_38 chrX:71106439-71106539 9.6e-07 60_[-10]_29 chr10:126926978-12692707 9.6e-07 65_[+10]_24 chr11:117610235-11761033 1.1e-06 51_[+10]_38 chr4:86024551-86024651 1.1e-06 12_[+10]_77 chr14:29752886-29752986 1.8e-06 39_[+10]_50 chr15:39659238-39659338 2.5e-06 73_[-10]_16 chr4:138551575-138551675 3.1e-06 64_[+10]_25 chr9:48670668-48670768 3.2e-06 67_[-10]_22 chr7:143153766-143153866 3.5e-06 [-10]_89 chr15:10671713-10671813 3.8e-06 32_[-10]_57 chr13:42102989-42103089 5.8e-06 69_[+10]_20 chr7:50441142-50441242 6.3e-06 48_[-10]_41 chr13:60488609-60488709 8e-06 42_[+10]_47 chr3:28144620-28144720 8.5e-06 14_[-10]_75 chr11:90271136-90271236 9.3e-06 63_[-10]_26 chr5:63624077-63624177 1.2e-05 82_[+10]_7 chr2:173057637-173057737 1.5e-05 77_[+10]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCMTSC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTGCCMTSC width=11 seqs=22 chr12:83169689-83169789 ( 12) GGCTGCCCTCC 1 chr15:74325339-74325439 ( 20) GGCTGCCCTGC 1 chr9:122592408-122592508 ( 32) GGCTGCCATGC 1 chr2:34646184-34646284 ( 41) GGCTGGCCTCC 1 chr9:76419338-76419438 ( 52) GGCTTCCCTCC 1 chrX:71106439-71106539 ( 61) GGCTTCCCTCC 1 chr10:126926978-12692707 ( 66) GGCTTCCCTCC 1 chr11:117610235-11761033 ( 52) TGCTGCCCTCC 1 chr4:86024551-86024651 ( 13) TGCTGCCCTCC 1 chr14:29752886-29752986 ( 40) GGCTGGCATGC 1 chr15:39659238-39659338 ( 74) GGGTGCCCTCC 1 chr4:138551575-138551675 ( 65) TGCTGCCATGC 1 chr9:48670668-48670768 ( 68) GGCTTGCCTCC 1 chr7:143153766-143153866 ( 1) GGCTGCCCTGT 1 chr15:10671713-10671813 ( 33) GGCTCCCATCC 1 chr13:42102989-42103089 ( 70) GGCTGACCTGC 1 chr7:50441142-50441242 ( 49) GGGTGCCATGC 1 chr13:60488609-60488709 ( 43) CGCTGCCATCC 1 chr3:28144620-28144720 ( 15) GGCTGTCATCC 1 chr11:90271136-90271236 ( 64) TGCTCCCCTGC 1 chr5:63624077-63624177 ( 83) GGCTAGCCTGC 1 chr2:173057637-173057737 ( 78) GGCTGGCATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCMTSC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 12.2874 E= 3.0e+003 -1110 -233 175 -57 -1110 -1110 213 -1110 -1110 199 -133 -1110 -1110 -1110 -1110 188 -257 -133 157 -57 -257 157 -1 -257 -1110 213 -1110 -1110 42 147 -1110 -1110 -1110 -1110 -1110 188 -1110 125 99 -1110 -1110 199 -1110 -157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCMTSC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 22 E= 3.0e+003 0.000000 0.045455 0.772727 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.000000 1.000000 0.045455 0.090909 0.681818 0.181818 0.045455 0.681818 0.227273 0.045455 0.000000 1.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.545455 0.454545 0.000000 0.000000 0.909091 0.000000 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCCMTSC MEME-10 regular expression -------------------------------------------------------------------------------- GGCTG[CG]C[CA]T[CG]C -------------------------------------------------------------------------------- Time 4405.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:116499747-116499847 5.02e-01 100 chr17:26462560-26462660 2.92e-04 48_[+1(4.61e-08)]_14_[-9(9.03e-05)]_\ 12 chr6:107421964-107422064 1.88e-04 18_[+2(4.14e-06)]_31_[-4(5.23e-06)]_\ 8 chr14:78796729-78796829 5.05e-01 100 chr2:51800130-51800230 4.40e-01 100 chr1:11795565-11795665 3.13e-02 41_[+10(6.23e-05)]_48 chr12:15758782-15758882 7.85e-02 100 chrX:73561846-73561946 1.31e-06 11_[-2(6.86e-08)]_7_[+9(6.23e-05)]_\ 42 chr5:27089196-27089296 2.50e-04 66_[-1(4.58e-06)]_19 chr15:31510472-31510572 2.72e-06 24_[-2(6.71e-05)]_8_[+6(2.49e-07)]_\ 28 chr14:120299384-12029948 1.74e-12 14_[-3(1.70e-12)]_12_[-2(5.03e-11)]_\ 16 chr2:68896120-68896220 1.21e-01 78_[+7(5.20e-05)]_7 chr10:122931068-12293116 3.67e-04 1_[-2(3.88e-07)]_70 chr1:169830521-169830621 7.78e-01 100 chr9:42707848-42707948 5.93e-01 28_[+8(9.74e-05)]_64 chr11:47137092-47137192 3.22e-02 81_[-4(3.32e-05)]_5 chr2:97719625-97719725 1.37e-03 51_[-4(2.53e-05)]_35 chr12:80147373-80147473 2.04e-01 100 chr6:38712837-38712937 6.21e-04 19_[-7(9.02e-06)]_50_[+8(4.22e-05)]_\ 8 chr11:21448463-21448563 5.16e-01 100 chr2:173057637-173057737 2.97e-04 56_[-8(6.73e-05)]_13_\ [+10(1.52e-05)]_12 chr12:70712295-70712395 1.62e-02 56_[-4(1.10e-05)]_30 chr1:25598666-25598766 5.22e-01 100 chr2:68980744-68980844 3.15e-02 2_[+4(7.75e-06)]_84 chr8:124349681-124349781 2.17e-08 51_[-1(6.00e-08)]_4_[+9(4.91e-06)]_\ 19 chr14:99491603-99491703 6.98e-06 18_[-7(3.18e-07)]_11_[+8(2.97e-05)]_\ 48 chr8:14262055-14262155 8.29e-01 100 chr2:122666226-122666326 2.60e-05 8_[+1(9.34e-07)]_37_[-7(5.60e-06)]_\ 25 chr15:79380968-79381068 1.25e-02 67_[-6(5.90e-06)]_22 chr8:34210390-34210490 1.23e-03 9_[-2(5.08e-09)]_62 chr4:29117029-29117129 3.85e-01 100 chr12:106174069-10617416 2.76e-01 100 chr9:70902753-70902853 6.32e-03 24_[-8(4.22e-05)]_68 chr1:39453714-39453814 8.99e-06 16_[+3(2.98e-06)]_55 chr10:86975938-86976038 3.52e-01 100 chr7:131817790-131817890 2.49e-01 16_[+8(1.48e-05)]_76 chr10:95475951-95476051 9.95e-05 8_[-1(2.99e-07)]_46_[-9(3.58e-06)]_\ 20 chr5:27675755-27675855 6.93e-01 100 chr13:112840685-11284078 1.34e-05 8_[+7(8.56e-09)]_20_[+3(6.08e-05)]_\ 28 chr3:68646364-68646464 9.58e-05 [+1(8.36e-07)]_85 chr16:43334225-43334325 3.47e-02 57_[+4(9.09e-05)]_29 chr18:47225092-47225192 1.91e-06 [-2(1.46e-05)]_71 chr14:35158116-35158216 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chr8:69007890-69007990 9.06e-01 100 chr8:12031683-12031783 2.65e-01 100 chr13:103564151-10356425 4.75e-06 28_[+7(1.14e-06)]_2_[-1(8.36e-07)]_\ 40 chr2:169792481-169792581 1.79e-05 41_[+3(4.64e-08)]_30 chr13:42102989-42103089 4.36e-04 35_[+4(8.45e-05)]_20_\ [+10(5.75e-06)]_20 chr16:27979518-27979618 1.15e-01 78_[-10(7.82e-05)]_11 chr1:155015555-155015655 4.42e-02 17_[-6(3.42e-05)]_38_[-5(1.51e-05)]_\ 6 chr13:36444632-36444732 4.75e-05 6_[+9(1.03e-05)]_40_[+7(8.87e-07)]_\ 28 chr5:149850887-149850987 8.52e-01 100 chr5:31810918-31811018 2.99e-01 100 chr2:72016016-72016116 1.79e-04 21_[+4(5.00e-05)]_36_[+3(5.12e-05)] chr19:36495418-36495518 4.73e-14 8_[-5(1.12e-15)]_34_[+6(6.74e-06)]_\ 19 chr15:41507386-41507486 4.77e-01 100 chr13:104982216-10498231 2.83e-01 100 chr6:49523118-49523218 8.59e-03 64_[-4(6.29e-05)]_22 chr17:27293828-27293928 2.11e-01 23_[+8(6.73e-05)]_69 chr6:92589297-92589397 1.92e-01 100 chr13:24548888-24548988 8.57e-02 100 chr5:44284339-44284439 1.08e-02 6_[+1(3.92e-06)]_24_[+1(1.06e-05)]_\ 40 chr5:45298814-45298914 1.25e-02 100 chr13:110968034-11096813 1.27e-02 72_[-1(6.11e-07)]_13 chr9:34736209-34736309 7.53e-02 25_[+4(3.32e-05)]_61 chr10:69653201-69653301 5.66e-02 43_[-8(4.22e-05)]_49 chr4:125462080-125462180 6.65e-11 7_[+3(4.46e-09)]_6_[+5(3.02e-06)]_\ 30 chr17:82901027-82901127 1.05e-01 100 chr4:85273281-85273381 5.47e-01 6_[+5(3.75e-05)]_66 chr17:73489800-73489900 3.20e-03 75_[-6(2.49e-07)]_14 chr12:83169689-83169789 6.41e-12 11_[+10(1.27e-07)]_44_\ [-2(5.80e-11)]_5 chr4:86810501-86810601 3.13e-06 51_[+1(1.65e-06)]_10_[+7(1.28e-05)]_\ 9 chr1:193447629-193447729 1.12e-02 28_[-6(2.49e-07)]_61 chr17:84877775-84877875 2.25e-07 12_[+1(6.76e-07)]_3_[+4(3.92e-05)]_\ 9_[-3(9.10e-06)]_18 chr5:63624077-63624177 4.61e-05 31_[-9(3.64e-05)]_2_[-8(1.48e-05)]_\ 30_[+10(1.24e-05)]_7 chr1:169421759-169421859 5.39e-05 46_[+9(7.13e-07)]_43 chr1:192244399-192244499 4.26e-02 6_[+6(4.08e-05)]_2_[-6(4.99e-06)]_\ 70 chr13:60488609-60488709 3.20e-02 42_[+10(7.98e-06)]_47 chr16:10055170-10055270 6.11e-01 100 chr15:78029824-78029924 7.12e-03 59_[+10(2.78e-05)]_30 chr1:169257763-169257863 1.20e-02 100 chr18:77606402-77606502 1.73e-07 36_[+9(1.78e-07)]_4_[-1(1.81e-06)]_\ 34 chr11:68216993-68217093 2.25e-03 4_[-2(8.99e-05)]_29_[+9(3.58e-06)]_\ 27 chr4:65834034-65834134 3.11e-02 4_[+8(4.22e-05)]_37_[-7(2.57e-05)]_\ 36 chr16:50732538-50732638 1.09e-05 15_[-3(1.92e-05)]_10_[-9(7.91e-06)]_\ 11_[-7(2.57e-05)]_9 chr7:64950395-64950495 1.80e-08 35_[+1(3.05e-06)]_50 chr5:38355126-38355226 3.23e-01 100 chr18:36150522-36150622 5.73e-03 16_[+3(2.05e-05)]_55 chr13:6127238-6127338 8.58e-01 100 chr5:20073588-20073688 2.94e-01 100 chr18:33794629-33794729 2.36e-03 50_[-3(5.90e-06)]_21 chr18:65190920-65191020 5.66e-01 100 chr5:112551612-112551712 2.71e-01 100 chr4:85162676-85162776 1.68e-03 61_[+1(1.98e-06)]_24 chr12:37908243-37908343 7.62e-03 12_[-4(3.92e-05)]_74 chr1:188420542-188420642 1.37e-01 100 chr18:39196377-39196477 8.59e-01 100 chr15:70163343-70163443 9.93e-02 79_[+8(9.74e-05)]_13 chr4:40875849-40875949 5.95e-03 54_[+8(1.48e-05)]_38 chr7:113961501-113961601 3.86e-06 12_[+7(3.96e-07)]_27_[+4(3.35e-06)]_\ 32 chr4:125261345-125261445 6.73e-06 6_[-3(5.04e-07)]_33_[-3(3.73e-08)]_\ 3 chr9:40617195-40617295 6.99e-02 100 chr12:29281020-29281120 9.73e-03 100 chrX:99690954-99691054 3.96e-01 100 chr12:50999565-50999665 2.33e-05 39_[-1(1.81e-06)]_22_[+4(2.53e-05)]_\ 10 chr19:41642952-41643052 2.28e-04 16_[-4(8.45e-05)]_21_\ [+10(3.50e-05)]_38 chr8:90000828-90000928 1.45e-07 29_[-3(6.44e-05)]_5_[+1(2.17e-06)]_\ 22 chr4:114476776-114476876 7.86e-01 100 chr1:70894877-70894977 9.53e-04 66_[+2(9.95e-07)]_5 chr17:6827219-6827319 7.22e-02 100 chr9:76419338-76419438 1.93e-03 18_[+8(4.22e-05)]_25_\ [-10(9.60e-07)]_38 chr13:37312506-37312606 1.68e-06 32_[-1(3.68e-07)]_20_[+7(2.23e-05)]_\ 18 chr13:56112922-56113022 1.65e-05 9_[-4(7.30e-05)]_1_[+7(3.67e-06)]_\ 21_[+2(2.07e-06)]_11 chr18:62267212-62267312 1.05e-08 54_[-2(1.46e-08)]_17 chr18:9414002-9414102 8.59e-04 35_[-8(9.74e-05)]_4_[+9(3.56e-07)]_\ 42 chr4:57473165-57473265 2.39e-02 36_[-4(2.53e-05)]_50 chr1:13268472-13268572 4.70e-01 100 chr1:157072544-157072644 1.79e-01 100 chr19:26318909-26319009 4.96e-03 58_[+4(3.93e-06)]_28 chr15:30424219-30424319 5.82e-05 52_[+1(1.14e-06)]_33 chr13:41719118-41719218 5.97e-02 100 chr13:59204482-59204582 1.07e-01 100 chr11:24481479-24481579 4.97e-03 36_[+8(1.48e-05)]_56 chr15:32324050-32324150 1.96e-05 17_[-9(8.00e-05)]_4_[-8(4.22e-05)]_\ 29_[+8(1.48e-05)]_3_[+9(1.78e-07)]_9 chr1:170504430-170504530 2.13e-01 64_[-4(6.79e-05)]_22 chr13:59252501-59252601 9.23e-04 20_[-7(1.52e-05)]_10_[-7(1.52e-05)]_\ 40 chr5:131430103-131430203 1.33e-03 35_[-1(9.34e-07)]_50 chr2:98123353-98123453 9.81e-01 100 chr12:78788416-78788516 7.99e-04 92_[+8(9.74e-05)] chr5:149968559-149968659 9.95e-01 100 chr12:5177415-5177515 6.26e-01 100 chr5:42239847-42239947 5.85e-01 100 chr5:27077809-27077909 1.23e-02 26_[+9(4.22e-05)]_63 chr18:71361719-71361819 7.67e-04 40_[-8(1.48e-05)]_3_[+8(1.48e-05)]_\ 5_[+4(2.13e-08)]_22 chr17:26442177-26442277 1.23e-06 29_[-4(1.31e-07)]_[+2(4.70e-05)]_28 chr6:99600645-99600745 6.92e-01 100 chr15:44064857-44064957 4.84e-01 100 chr6:102515282-102515382 4.64e-04 6_[-3(1.08e-07)]_65 chr16:28631687-28631787 8.20e-01 100 chr12:27158583-27158683 1.71e-01 100 chr11:77316912-77317012 4.25e-01 100 chr12:5123223-5123323 1.00e-01 100 chr3:55872948-55873048 9.42e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-39.local ********************************************************************************