# DREME 4.12.0 # command: dreme -v 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/dreme_out -png -dna -p /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-centered -n /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/control-centered # positives: 22727 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-centered (Wed Jan 13 22:28:01 EST 2021) # negatives: 202202 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_NP_reproduciblePeaks_enhancerShort.MemeChipResults/control-centered (Wed Jan 13 22:28:08 EST 2021) # host: compute-1-39.local # when: Thu Jan 14 01:02:54 EST 2021 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.273 C 0.228 G 0.227 T 0.272 MOTIF CVCCK DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CVCCK MGGBG 10998 75248 8.2e-232 3.9e-227 # CACCT AGGTG 5273 33371 1.3e-132 6.3e-128 # CCCCT AGGGG 4192 28354 2.8e-068 1.3e-063 # CCCCG CGGGG 1522 8819 1.3e-051 6.2e-047 # CGCCG CGGCG 496 2133 3.2e-042 1.5e-037 # CACCG CGGTG 1452 8901 2.1e-038 1.0e-033 # CGCCT AGGCG 1628 10714 1.1e-029 5.3e-025 letter-probability matrix: alength= 4 w= 5 nsites= 16525 E= 3.9e-227 0.000000 1.000000 0.000000 0.000000 0.459062 0.403631 0.137307 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.230015 0.769985 MOTIF MCCK DREME-2 # Word RC Word Pos Neg P-value E-value # BEST MCCK MGGK 17297 136337 3.7e-164 1.7e-159 # ACCT AGGT 7976 56944 8.4e-103 3.7e-098 # CCCT AGGG 12074 93935 2.1e-081 9.2e-077 # CCCG CGGG 3047 19439 8.1e-068 3.6e-063 # ACCG CGGT 1879 13603 1.3e-017 5.7e-013 letter-probability matrix: alength= 4 w= 4 nsites= 33441 E= 1.7e-159 0.354834 0.645166 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.163362 0.836638 MOTIF GCGS DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GCGS SCGC 3377 19365 5.4e-125 2.1e-120 # GCGC GCGC 1885 9664 5.8e-100 2.2e-095 # GCGG CCGC 1861 10902 1.5e-060 5.8e-056 letter-probability matrix: alength= 4 w= 4 nsites= 4231 E= 2.1e-120 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.515954 0.484046 0.000000 MOTIF CAKATGB DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CAKATGB VCATMTG 4873 32496 3.3e-089 1.2e-084 # CAGATGG CCATCTG 1928 12269 2.0e-042 7.3e-038 # CAGATGC GCATCTG 1024 6452 7.1e-024 2.6e-019 # CATATGG CCATATG 769 4598 3.6e-023 1.3e-018 # CAGATGT ACATCTG 1013 6803 1.1e-016 4.1e-012 # CATATGT ACATATG 652 4545 5.8e-009 2.1e-004 # CATATGC GCATATG 568 3974 8.1e-008 3.0e-003 letter-probability matrix: alength= 4 w= 7 nsites= 5411 E= 1.2e-084 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.751617 0.248383 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.260765 0.469229 0.270006 MOTIF SCTSS DREME-5 # Word RC Word Pos Neg P-value E-value # BEST SCTSS SSAGS 16568 135386 6.8e-076 2.5e-071 # GCTCC GGAGC 4664 33847 4.5e-045 1.6e-040 # GCTGC GCAGC 6494 50527 1.3e-031 4.9e-027 # CCTGC GCAGG 3961 29353 8.7e-031 3.2e-026 # CCTGG CCAGG 4263 32136 5.0e-028 1.8e-023 # GCTGG CCAGC 6685 53710 4.0e-020 1.5e-015 # CCTCC GGAGG 3463 27104 2.6e-014 9.4e-010 # CCTCG CGAGG 689 4498 9.1e-014 3.3e-009 # GCTCG CGAGC 890 6249 3.7e-011 1.4e-006 letter-probability matrix: alength= 4 w= 5 nsites= 32096 E= 2.5e-071 0.000000 0.386871 0.613129 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.297233 0.702767 0.000000 0.000000 0.592909 0.407091 0.000000 MOTIF CGS DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CGS SCG 6836 52132 1.8e-043 6.1e-039 # CGG CCG 3464 24964 2.8e-034 9.6e-030 # CGC GCG 4187 32106 1.2e-022 4.1e-018 letter-probability matrix: alength= 4 w= 3 nsites= 8900 E= 6.1e-039 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.562921 0.437079 0.000000 MOTIF CCYC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCYC GRGG 9578 77848 1.0e-026 3.0e-022 # CCCC GGGG 4244 32885 3.2e-020 9.3e-016 # CCTC GAGG 6528 53704 2.1e-012 5.9e-008 letter-probability matrix: alength= 4 w= 4 nsites= 12922 E= 3.0e-022 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.389413 0.000000 0.610587 0.000000 1.000000 0.000000 0.000000 MOTIF CTAGTGGH DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CTAGTGGH DCCACTAG 237 1176 8.1e-015 2.2e-010 # CTAGTGGT ACCACTAG 96 455 1.0e-007 2.9e-003 # CTAGTGGC GCCACTAG 76 350 8.1e-007 2.2e-002 # CTAGTGGA TCCACTAG 66 375 8.5e-004 2.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 239 E= 2.2e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.271967 0.326360 0.000000 0.401674 MOTIF GCWC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GCWC GWGC 13723 116800 1.6e-014 4.3e-010 # GCTC GAGC 8731 72931 1.8e-012 5.1e-008 # GCAC GTGC 8570 72588 4.1e-008 1.1e-003 letter-probability matrix: alength= 4 w= 4 nsites= 21144 E= 4.3e-010 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.494561 0.000000 0.000000 0.505439 0.000000 1.000000 0.000000 0.000000 MOTIF AGGAAG DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AGGAAG CTTCCT 1807 13526 1.4e-012 3.5e-008 # AGGAAG CTTCCT 1807 13526 1.4e-012 3.5e-008 letter-probability matrix: alength= 4 w= 6 nsites= 1928 E= 3.5e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCATGGYA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CCATGGYA TRCCATGG 246 1382 1.5e-010 4.0e-006 # CCATGGCA TGCCATGG 175 924 1.4e-009 3.6e-005 # CCATGGTA TACCATGG 95 545 1.0e-004 2.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 251 E= 4.0e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.665339 0.000000 0.334661 1.000000 0.000000 0.000000 0.000000 MOTIF CTSC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CTSC GSAG 11762 100733 1.6e-008 4.2e-004 # CTCC GGAG 6355 53742 4.4e-006 1.1e-001 # CTGC GCAG 7375 63200 1.2e-004 3.2e+000 letter-probability matrix: alength= 4 w= 4 nsites= 16288 E= 4.2e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.454384 0.545616 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RAGTTCA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST RAGTTCA TGAACTY 564 3996 3.6e-007 8.9e-003 # AAGTTCA TGAACTT 322 2228 2.2e-005 5.4e-001 # GAGTTCA TGAACTC 244 1789 2.9e-003 7.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 569 E= 8.9e-003 0.567663 0.000000 0.432337 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAACAGS DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GAACAGS SCTGTTC 498 3514 1.1e-006 2.8e-002 # GAACAGC GCTGTTC 344 2430 4.9e-005 1.2e+000 # GAACAGG CCTGTTC 155 1100 5.6e-003 1.4e+002 letter-probability matrix: alength= 4 w= 7 nsites= 501 E= 2.8e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.690619 0.309381 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 15853.18 seconds