******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.IT_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:97636810-97636910 1.0000 100 chr17:66412217-66412317 1.0000 100 chr6:94020484-94020584 1.0000 100 chr14:99380802-99380902 1.0000 100 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1.0000 100 chr12:105427284-10542738 1.0000 100 chr5:36918926-36919026 1.0000 100 chr5:41974560-41974660 1.0000 100 chr13:101632719-10163281 1.0000 100 chr9:40746851-40746951 1.0000 100 chr10:18496998-18497098 1.0000 100 chr4:118083566-118083666 1.0000 100 chr17:86014218-86014318 1.0000 100 chr4:78012231-78012331 1.0000 100 chr17:78172966-78173066 1.0000 100 chr12:44608494-44608594 1.0000 100 chr4:80950254-80950354 1.0000 100 chr1:153304458-153304558 1.0000 100 chr17:86392393-86392493 1.0000 100 chr5:53677972-53678072 1.0000 100 chr1:124332330-124332430 1.0000 100 chr1:151124964-151125064 1.0000 100 chr13:44235163-44235263 1.0000 100 chr16:7892708-7892808 1.0000 100 chr15:68196452-68196552 1.0000 100 chr1:122346819-122346919 1.0000 100 chr18:81742475-81742575 1.0000 100 chr11:21180667-21180767 1.0000 100 chr4:56674122-56674222 1.0000 100 chr16:54251889-54251989 1.0000 100 chr7:40748929-40749029 1.0000 100 chr5:24970899-24970999 1.0000 100 chr18:35855239-35855339 1.0000 100 chr12:89396184-89396284 1.0000 100 chr5:10662461-10662561 1.0000 100 chr18:31350160-31350260 1.0000 100 chr18:68129735-68129835 1.0000 100 chr5:81590322-81590422 1.0000 100 chr4:77648860-77648960 1.0000 100 chr12:5328655-5328755 1.0000 100 chr1:143171410-143171510 1.0000 100 chr18:39855615-39855715 1.0000 100 chr15:56333115-56333215 1.0000 100 chr4:36183609-36183709 1.0000 100 chr7:101538004-101538104 1.0000 100 chr4:111025779-111025879 1.0000 100 chr9:43935603-43935703 1.0000 100 chr11:112970649-11297074 1.0000 100 chrX:137812050-137812150 1.0000 100 chr12:13054533-13054633 1.0000 100 chr19:46875747-46875847 1.0000 100 chr8:86201762-86201862 1.0000 100 chr4:102511401-102511501 1.0000 100 chr1:25291607-25291707 1.0000 100 chr17:5260981-5261081 1.0000 100 chr9:96425962-96426062 1.0000 100 chr13:6114558-6114658 1.0000 100 chr13:38602936-38603036 1.0000 100 chr18:65101545-65101645 1.0000 100 chr18:10150797-10150897 1.0000 100 chr4:52284837-52284937 1.0000 100 chr15:40364085-40364185 1.0000 100 chr1:89193511-89193611 1.0000 100 chr19:29889140-29889240 1.0000 100 chr15:17054006-17054106 1.0000 100 chr13:6836681-6836781 1.0000 100 chr13:42916031-42916131 1.0000 100 chr10:102449365-10244946 1.0000 100 chr15:20897568-20897668 1.0000 100 chr1:123414378-123414478 1.0000 100 chr13:42963878-42963978 1.0000 100 chr5:110522473-110522573 1.0000 100 chr2:97714460-97714560 1.0000 100 chr12:34053152-34053252 1.0000 100 chr5:125732927-125733027 1.0000 100 chr11:75231148-75231248 1.0000 100 chr5:27673685-27673785 1.0000 100 chr5:16241121-16241221 1.0000 100 chr18:72992464-72992564 1.0000 100 chr17:25607994-25608094 1.0000 100 chr6:74101066-74101166 1.0000 100 chr15:29441963-29442063 1.0000 100 chr6:81210076-81210176 1.0000 100 chr16:25622589-25622689 1.0000 100 chr11:107372607-10737270 1.0000 100 chr11:22918754-22918854 1.0000 100 chr11:71995899-71995999 1.0000 100 chr3:65612242-65612342 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.IT_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.IT_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.IT_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.IT_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.266 C 0.234 G 0.234 T 0.266 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.IT_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.281 C 0.219 G 0.219 T 0.281 ******************************************************************************** ******************************************************************************** MOTIF GDGDGDRKGKGKGDGTGKRDG MEME-1 width = 21 sites = 107 llr = 1181 E-value = 4.6e-095 ******************************************************************************** -------------------------------------------------------------------------------- Motif GDGDGDRKGKGKGDGTGKRDG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3131241:2222312:2331 pos.-specific C 2:1:11:12:::1:1::1::: probability G 8363846374857372a4739 matrix T 1524:4:414:3:315:4:4: bits 2.2 2.0 * 1.8 * 1.5 * * Relative 1.3 * * * Entropy 1.1 * * * * * * * * (15.9 bits) 0.9 * * * * * * * * * * 0.7 * * * * * * * * * * 0.4 ***** * ******* * *** 0.2 ********************* 0.0 --------------------- Multilevel GTGTGGGTGGGGGGGTGGGTG consensus ATG TAGCTATAA G TAA sequence G A A A T A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGDGDRKGKGKGDGTGKRDG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr10:99242047-99242147 + 43 3.46e-11 TGTGCAGGAA GTGGGGGGGGGGGGGAGGGGG AAGGAGTGTG chr13:41446560-41446660 + 30 6.87e-11 ATATGGGTGG GTGTGGGTGTGTGGGTGTGTG TCAAGGACAT chr11:22918754-22918854 - 66 4.01e-10 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGTG TGAATAACAG chr2:97714460-97714560 + 61 4.01e-10 CACTCCCACt gtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr8:112150843-112150943 + 41 4.01e-10 taagtgctct gtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr13:93571836-93571936 - 44 4.01e-10 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGTG TGAATCATCT chr2:72740842-72740942 - 2 4.01e-10 GAGGGTGTGT GTGTGTGTGTGTGTGTGTGTG T chr18:39855615-39855715 - 13 1.10e-09 GAGAGCAGTC GGGGGTGGGGGTGGGGGTGGG GAGAATGGCT chr1:98351286-98351386 - 80 1.10e-09 . GTGTGTGTGTGAGTGTGTGTG TGAGTGAGTG chr10:66920371-66920471 - 77 9.23e-09 AGA GGCTGGGGGGGGGGGGGGGAG GAGTTAAGAA chr17:70700429-70700529 + 66 1.62e-08 ggaggggcgg gtatggggcgggggggggggg gcagagatgg chr18:35855239-35855339 - 47 2.75e-08 CTGGGGTGGG GTGGGGGCTGGGGTGTGTGTG TGAAGGAGAG chr13:43023274-43023374 - 51 2.75e-08 GTACTTCAGT GTGTGTGTGTGTCTGTGTGTG TCCCTTAGTC chr11:112970649-11297074 - 27 3.87e-08 AGTGTGTTGT GTGTATATGTGTGAGTGGGTG ATTGTGTGTT chr3:125466881-125466981 + 1 3.87e-08 . gagagggagggagagagggtg agagacagag chr14:64317472-64317572 - 54 6.32e-08 GGAGGACTGA GGGAGGAGGAGGGGGAGGAGG AGGACACTGT chr10:119015038-11901513 - 75 7.40e-08 TCTTA GGGAGGGTGAGGAGGTGGAAG GAGATGGCTG chr10:43096560-43096660 + 48 7.40e-08 CCCCACCCTC gtgtgtgagtgtgtatgtgtg tgtgtgtgtg chr2:38402546-38402646 + 60 8.65e-08 GTGAGTAAGT GTGAGTGCGTGAGTGTGTAGG GAGTGCCTAT chr19:40947377-40947477 + 61 1.01e-07 GGGTGGGTAG Ttgtgtatgtgggtgtggggg gtatttgtat chr14:93637053-93637153 - 44 1.58e-07 ATAAAGTCTG GGGTGAGAGTGGGAGAGTAGG ATGCAGAGCA chr15:12362576-12362676 - 70 1.58e-07 ATCACAGAGG CTGTGAATGAGTGAGTGGGAG GACCCACTTA chr11:75231148-75231248 + 2 1.83e-07 C CAGGGAATGGGAGGGTGTGGG CCTCTATTTG chr6:36206601-36206701 + 74 1.83e-07 AGTAGAAGTT GTGAGTGGGAAGGGGTGGGGA GTGTGT chr15:97507812-97507912 + 23 1.83e-07 CACATGTGTT CTTGGGGGCGGGAGGTGGGGG GCACCCCTGC chr11:117414782-11741488 + 39 2.11e-07 GGGCCCTGAA GGGTGGAGGAGGGGCGGGGAG AGGACGGCTG chr5:128323242-128323342 - 54 2.43e-07 AGAGAGGGAG GAGAGGAGGGAGGAGAGGAGG GAGGGAGAGA chr1:145344766-145344866 + 20 2.79e-07 gggggtaaca gatggagggagagagtgtggg gagacacagc chr6:107983430-107983530 - 8 3.20e-07 TTGTCATCTG GTATGTGTGTGTGTATGTGTG TTTATCT chr1:151124964-151125064 - 57 3.67e-07 CGGCAGGAAA CGGTGAAGCTGTGGGTGTGGG AAGGAACATA chr7:63554429-63554529 - 35 3.67e-07 TCTGTGTGCA GATGGCAGGGGGGGGGGAGTG GGAAGTAGGA chr4:120047129-120047229 + 5 5.45e-07 AGGA GTGAGTAGGGAGGAAGGGATG GGCAGGGGAT chr17:14174348-14174448 - 9 5.45e-07 GGCAACCTGG GGTGGGATGGGGCTGTGTATG CTGTATGA chr19:26512442-26512542 + 44 7.98e-07 GAAGCAggag gtgggaggtgagaggtgggag gtgggaTGCC chr8:15942450-15942550 - 31 9.04e-07 GCAGCCTGTG GAATATGTGTGGGAGTGGATG AGCAGGAGGG chr3:80672165-80672265 + 35 9.04e-07 gccaagaaat gggagtgagtgggtaggagag cagagcgagg chr7:83014641-83014741 + 15 9.04e-07 ctctctctct ctcTGTGTGGGTATGTGTGTG GTGTATAAAT chr2:167146603-167146703 - 25 9.04e-07 GAGGGAAGGA GAGAGAGACGGGGGAGGGGAG GGGTGCCCTC chr18:81861821-81861921 + 60 1.02e-06 CCCACGCGCA GTTTCGGGGAGTGAGGGAGTG CTTGAGAGAC chr8:14536586-14536686 + 17 1.15e-06 CATAGAGAGG CTGGGGGTGGGGCTTGGGGTG GAATGGCACA chr15:27731597-27731697 + 1 1.15e-06 . GGCGGTGGGTAGGAGGGGAAG GGGTGGGGGA chr2:90612175-90612275 - 47 1.15e-06 CCCTGGGTGT GGTAGTAGGAGAGAGAGTGAG TCAAGCCTTG chr4:127400148-127400248 - 12 1.30e-06 AAGGGGAACA GAGTGGGCCGGAGAATGTATG AAGTCAGCCT chr3:130351600-130351700 + 31 1.46e-06 GTGCAGGAGC GGTGGGGGCGGTAGGTGCGAG CTGTCAGAGA chrX:64546085-64546185 - 7 1.64e-06 GCGCCAGCTG GAGGCAATGAAGGAGTGGGTG ACATAA chr13:97007313-97007413 - 13 1.84e-06 CCTGATCGGA GTGAGTGTGGAGGGTGGAAAG TACCGAAGGG chr2:43241882-43241982 + 22 1.84e-06 ctcactttct ctgtggatctaggtgagagtg atgtgggcag chr19:58896291-58896391 + 23 1.84e-06 agagggagag gggagagagagagagagagag agagagagag chr11:108799621-10879972 + 49 2.06e-06 GAGACTGCCT GAGAAGGCGTGGGGGCGGATG TGCTTTGAAT chr4:4971796-4971896 - 25 2.30e-06 TATGAAAGAT GTGAATAGGAGGGAGGGAAGG GCTGTTCTGA chr12:26227730-26227830 + 63 2.57e-06 GAGACAGTgg ggagggaaggggaggggaggg AAATGTACTG chr18:77257600-77257700 + 25 2.57e-06 GGCGTTTGCT CGATGTGCCGGGGGATGGGTG CAGATGGAAG chr1:123414378-123414478 + 52 3.20e-06 CAAAGTGAAG GTGTCAGCGGGAGGGTGAGTA CAACTTGCAA chr5:101365313-101365413 - 19 3.20e-06 GCCTCCCAGT GTTGGCGGCGAGAAGTGTGAG CCGAGCAGCC chr1:135561250-135561350 + 62 3.20e-06 AACAGGCAGC GATTGAGTGGGTGGTAGGAAG CAATGCATTA chr2:43003370-43003470 + 21 3.20e-06 gctgtggaaa gagtgggtgaagcagaggaag cacacacaga chr1:89193511-89193611 + 26 3.95e-06 AAATAGCAGC GAGAGAGTGGGCGGCTGGAGG AGGGGCAGCT chr6:56302568-56302668 - 10 4.39e-06 ACATGTATTT GTGTGTACGTGTGTGTGCATA TGCATGTAT chr1:21508429-21508529 - 40 4.39e-06 AAAAGAAAGT GTGTGAAAGAGAGAGAGAAAG AACGAAAGAA chr4:53486285-53486385 + 39 4.39e-06 AGCATCCTAA GTGTGGGTGGGCTTGTGAGAG AGAGGCAGTG chr13:44235163-44235263 - 51 4.86e-06 ACGTTGAAGA GGGTGGATGGAGCTGAGCGAG TTTAATTTAA chr14:64585696-64585796 - 29 4.86e-06 CCGGGGTGGG GGTGGAGTGGGGGAGCGGAGA CCTGGTTTTG chr18:69290812-69290912 + 48 5.38e-06 TGGAGACATG TGTGGGAGGTGGGAGCGTGTG GCGCCATGTC chr18:41813430-41813530 - 37 5.38e-06 GGTGGGCTGT GAGAGTGCTGGAGAGTGAAGG CTAGCTTGGT chr9:46632553-46632653 + 57 5.95e-06 cgaatgggag ctgagtaatggggtgggtatg gcaaccatgt chr4:78012231-78012331 + 1 6.57e-06 . GTAAGGAGCTGGAAGAGGAAG CCACTTCTGT chr4:27979148-27979248 + 25 6.57e-06 TGTGCAGATC GAGTGGGCGGAGAAAAGTATG TGAGAAGACT chr5:51475088-51475188 + 62 7.25e-06 AAAGGAAGAC CAGGGTGCCTGTGGGTTGGTG CCTTGCCTGC chr18:43238231-43238331 + 50 7.25e-06 CGGTGCTCCA GTTAGAGTGGGTAGATGTGTA AAAACATTAT chr9:4605352-4605452 - 50 7.25e-06 CATTTCCTCC CAGAGGAAGAGGAAGAGTGAG AAAAATATAT chr2:8109487-8109587 + 63 7.99e-06 agctgtctct gttgaagtgggtgtgagtgaa tcagtcccaa chr16:96843676-96843776 - 14 8.79e-06 CATCATGCGG GGGTGCGGCTGTCAGTGCGAG GTGGCAGGCA chr1:190761698-190761798 - 5 8.79e-06 CAAGCCTGCA GGAAAGGGGTGGAGGAGGAAG ATGA chr1:124332330-124332430 - 3 9.66e-06 AGACAGCTGT GTTGCAGTGAGTATGTGGAGG GA chr6:74031382-74031482 + 65 9.66e-06 TTGGCAAAGA CAGTGTATCAGAGTGAGAGAG TAGAATCTGG chr9:48638097-48638197 + 26 9.66e-06 AAAGACACAG GGTGGGAGCTAAAAGTGGATG AGGTTTTGAC chr3:52685764-52685864 + 53 1.06e-05 GGAGTGGTGA TTTAGTACGGGTGTGGGAGGG AGGCACGTTG chr16:95382482-95382582 + 36 1.06e-05 CTATGTTATT CTTAATGTCGATGTGTGGGAG AAATGCGTGT chr4:102511401-102511501 + 46 1.16e-05 GGCACTGAGC CTCTGTAGCGAAGGGTGGAGG AGGAAGCCAG chr12:105427284-10542738 - 1 1.16e-05 CAGGCTGGCT GGGGAGGTGTGGTAATGTGTG chr19:44364026-44364126 - 54 1.16e-05 AAGTGTGTCT GTGTGAAACGAGGGGGTGGAG TGCAAAGCAG chr10:98943586-98943686 - 74 1.28e-05 AAGAAC TTGTGGGTGGACGATTGGGTG TGAATCTGTT chr10:31253082-31253182 - 32 1.28e-05 TTGTTCCTGG GACAGCATGTATGTGTGTGGG GGATAGATCT chr4:102618961-102619061 + 45 1.40e-05 TTGTATAACA GGAAGGAGGTAGGAGTGTAAA AGTACTTCAT chr5:16241121-16241221 - 12 1.67e-05 GAGGCACTCT CAGTGTGGGTGAGGTGGGATA TGAACATGAA chr3:143220380-143220480 + 59 1.67e-05 ATCTCAGATG GTGAAGAGGTGTATTGGTGAG ACATGCAACA chr11:91252658-91252758 + 57 1.67e-05 TCAGCTCCAT CATTCCATCTGGGAGTGGGTG GACACAGGAA chr10:18496998-18497098 - 23 1.82e-05 ATCTGGGGTA GTGGGTGGGAAAGGCAGTGGA GGCTTCTCAA chr2:7012169-7012269 + 22 1.82e-05 TGTCAACAGG GTGGCTGATGGGAAGGGAGAG CAGGCAGAAC chr3:20666979-20667079 - 68 1.82e-05 GCAGATGCTG GAGAAGATGTGGAGAAGGAGG AACACTCCTC chr19:46875747-46875847 + 48 2.16e-05 TGTTCTCTCA GGAGGTGGCAGGGACAGTAGG GGGCACTGTT chr15:36737992-36738092 - 8 2.35e-05 ACTAATCACA GAGGCAGGGGGAGGAGGGATA TGGGTTG chr3:88214173-88214273 + 65 2.35e-05 TGAGGAAGGA GTGTGAAGGGATGAATGAAAA GTCCGGAGCC chr5:81590322-81590422 + 50 2.55e-05 ATGGAGAAGT GTTAGAGACTGAATGAGTAGG CTCAGAACCT chr7:144316731-144316831 + 3 3.00e-05 GG CAAACTGTGTGGCTGGGGGTG TTTTCCGTTG chr1:109932661-109932761 + 67 3.52e-05 TTTGCCTACT GTGTAGATCTATGAGTTTGGG CGGCCCACAG chr15:69092173-69092273 - 67 3.81e-05 AGGTTCTCCC CACGGGGACTGAAGGAGGGAG GCACAGTAGC chr6:24344191-24344291 + 76 5.16e-05 GAGAAGCTTT GTGTGTGTGAGTGTTGTGGAA AGTG chr7:143295513-143295613 + 26 6.90e-05 GCCGTGAGTG CTTGCCGCGAGGAGGGGGAGG CTATGATGAG chr15:27808082-27808182 - 41 9.09e-05 AAAGAGCTGG GATGGAGCGTAGAACCGTGTG TGGGCGAGTG chr1:21499818-21499918 - 52 9.09e-05 AATTGCTGTG TTGTGTGTTAAACTGTGTGTG GGAAACTCTC chr16:94962484-94962584 - 32 9.73e-05 GAAGAATTTG TGTGGGACGGAACTGTGAGTG TGCTTGGGAT chr4:97751630-97751730 + 49 9.73e-05 CGGGATGTCC CGTGGGGTGGGAGGACGCGTA GGGCGGCGTC chr3:50300861-50300961 + 23 1.11e-04 TACTGAAGGA GACTGCGCTGGGAGATGAGTG AAAAGCTAGC chr2:71638536-71638636 + 80 1.62e-04 CCATCCCCGT GGTTCGGGCGGGGATGATGTG chr9:40634636-40634736 - 37 1.82e-04 TTTTGGAACT GTTAAAAACGATGTTTGTATG ACTTCAGACA chr12:71949991-71950091 + 36 3.02e-04 AAGTTCAGAA GTAGAGAGCGGCGGCGGCATG TTGCTCAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGDGDRKGKGKGDGTGKRDG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:99242047-99242147 3.5e-11 42_[+1]_37 chr13:41446560-41446660 6.9e-11 29_[+1]_50 chr11:22918754-22918854 4e-10 65_[-1]_14 chr2:97714460-97714560 4e-10 60_[+1]_19 chr8:112150843-112150943 4e-10 40_[+1]_39 chr13:93571836-93571936 4e-10 43_[-1]_36 chr2:72740842-72740942 4e-10 1_[-1]_78 chr18:39855615-39855715 1.1e-09 12_[-1]_67 chr1:98351286-98351386 1.1e-09 79_[-1] chr10:66920371-66920471 9.2e-09 76_[-1]_3 chr17:70700429-70700529 1.6e-08 65_[+1]_14 chr18:35855239-35855339 2.8e-08 46_[-1]_33 chr13:43023274-43023374 2.8e-08 50_[-1]_29 chr11:112970649-11297074 3.9e-08 26_[-1]_53 chr3:125466881-125466981 3.9e-08 [+1]_79 chr14:64317472-64317572 6.3e-08 53_[-1]_26 chr10:119015038-11901513 7.4e-08 74_[-1]_5 chr10:43096560-43096660 7.4e-08 47_[+1]_32 chr2:38402546-38402646 8.6e-08 59_[+1]_20 chr19:40947377-40947477 1e-07 60_[+1]_19 chr14:93637053-93637153 1.6e-07 43_[-1]_36 chr15:12362576-12362676 1.6e-07 69_[-1]_10 chr11:75231148-75231248 1.8e-07 1_[+1]_78 chr6:36206601-36206701 1.8e-07 73_[+1]_6 chr15:97507812-97507912 1.8e-07 22_[+1]_57 chr11:117414782-11741488 2.1e-07 38_[+1]_41 chr5:128323242-128323342 2.4e-07 53_[-1]_26 chr1:145344766-145344866 2.8e-07 19_[+1]_60 chr6:107983430-107983530 3.2e-07 7_[-1]_72 chr1:151124964-151125064 3.7e-07 56_[-1]_23 chr7:63554429-63554529 3.7e-07 34_[-1]_45 chr4:120047129-120047229 5.5e-07 4_[+1]_75 chr17:14174348-14174448 5.5e-07 8_[-1]_71 chr19:26512442-26512542 8e-07 43_[+1]_36 chr8:15942450-15942550 9e-07 30_[-1]_49 chr3:80672165-80672265 9e-07 34_[+1]_45 chr7:83014641-83014741 9e-07 14_[+1]_65 chr2:167146603-167146703 9e-07 24_[-1]_55 chr18:81861821-81861921 1e-06 59_[+1]_20 chr8:14536586-14536686 1.2e-06 16_[+1]_63 chr15:27731597-27731697 1.2e-06 [+1]_79 chr2:90612175-90612275 1.2e-06 46_[-1]_33 chr4:127400148-127400248 1.3e-06 11_[-1]_68 chr3:130351600-130351700 1.5e-06 30_[+1]_49 chrX:64546085-64546185 1.6e-06 6_[-1]_73 chr13:97007313-97007413 1.8e-06 12_[-1]_67 chr2:43241882-43241982 1.8e-06 21_[+1]_58 chr19:58896291-58896391 1.8e-06 22_[+1]_57 chr11:108799621-10879972 2.1e-06 48_[+1]_31 chr4:4971796-4971896 2.3e-06 24_[-1]_55 chr12:26227730-26227830 2.6e-06 62_[+1]_17 chr18:77257600-77257700 2.6e-06 24_[+1]_55 chr1:123414378-123414478 3.2e-06 51_[+1]_28 chr5:101365313-101365413 3.2e-06 18_[-1]_61 chr1:135561250-135561350 3.2e-06 61_[+1]_18 chr2:43003370-43003470 3.2e-06 20_[+1]_59 chr1:89193511-89193611 4e-06 25_[+1]_54 chr6:56302568-56302668 4.4e-06 9_[-1]_70 chr1:21508429-21508529 4.4e-06 39_[-1]_40 chr4:53486285-53486385 4.4e-06 38_[+1]_41 chr13:44235163-44235263 4.9e-06 50_[-1]_29 chr14:64585696-64585796 4.9e-06 28_[-1]_51 chr18:69290812-69290912 5.4e-06 47_[+1]_32 chr18:41813430-41813530 5.4e-06 36_[-1]_43 chr9:46632553-46632653 6e-06 56_[+1]_23 chr4:78012231-78012331 6.6e-06 [+1]_79 chr4:27979148-27979248 6.6e-06 24_[+1]_55 chr5:51475088-51475188 7.3e-06 61_[+1]_18 chr18:43238231-43238331 7.3e-06 49_[+1]_30 chr9:4605352-4605452 7.3e-06 49_[-1]_30 chr2:8109487-8109587 8e-06 62_[+1]_17 chr16:96843676-96843776 8.8e-06 13_[-1]_66 chr1:190761698-190761798 8.8e-06 4_[-1]_75 chr1:124332330-124332430 9.7e-06 2_[-1]_77 chr6:74031382-74031482 9.7e-06 64_[+1]_15 chr9:48638097-48638197 9.7e-06 25_[+1]_54 chr3:52685764-52685864 1.1e-05 52_[+1]_27 chr16:95382482-95382582 1.1e-05 35_[+1]_44 chr4:102511401-102511501 1.2e-05 45_[+1]_34 chr12:105427284-10542738 1.2e-05 [-1]_79 chr19:44364026-44364126 1.2e-05 53_[-1]_26 chr10:98943586-98943686 1.3e-05 73_[-1]_6 chr10:31253082-31253182 1.3e-05 31_[-1]_48 chr4:102618961-102619061 1.4e-05 44_[+1]_35 chr5:16241121-16241221 1.7e-05 11_[-1]_68 chr3:143220380-143220480 1.7e-05 58_[+1]_21 chr11:91252658-91252758 1.7e-05 56_[+1]_23 chr10:18496998-18497098 1.8e-05 22_[-1]_57 chr2:7012169-7012269 1.8e-05 21_[+1]_58 chr3:20666979-20667079 1.8e-05 67_[-1]_12 chr19:46875747-46875847 2.2e-05 47_[+1]_32 chr15:36737992-36738092 2.3e-05 7_[-1]_72 chr3:88214173-88214273 2.3e-05 64_[+1]_15 chr5:81590322-81590422 2.5e-05 49_[+1]_30 chr7:144316731-144316831 3e-05 2_[+1]_77 chr1:109932661-109932761 3.5e-05 66_[+1]_13 chr15:69092173-69092273 3.8e-05 66_[-1]_13 chr6:24344191-24344291 5.2e-05 75_[+1]_4 chr7:143295513-143295613 6.9e-05 25_[+1]_54 chr15:27808082-27808182 9.1e-05 40_[-1]_39 chr1:21499818-21499918 9.1e-05 51_[-1]_28 chr16:94962484-94962584 9.7e-05 31_[-1]_48 chr4:97751630-97751730 9.7e-05 48_[+1]_31 chr3:50300861-50300961 0.00011 22_[+1]_57 chr2:71638536-71638636 0.00016 79_[+1] chr9:40634636-40634736 0.00018 36_[-1]_43 chr12:71949991-71950091 0.0003 35_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGDGDRKGKGKGDGTGKRDG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GDGDGDRKGKGKGDGTGKRDG width=21 seqs=107 chr10:99242047-99242147 ( 43) GTGGGGGGGGGGGGGAGGGGG 1 chr13:41446560-41446660 ( 30) GTGTGGGTGTGTGGGTGTGTG 1 chr11:22918754-22918854 ( 66) GTGTGTGTGTGTGTGTGTGTG 1 chr2:97714460-97714560 ( 61) GTGTGTGTGTGTGTGTGTGTG 1 chr8:112150843-112150943 ( 41) GTGTGTGTGTGTGTGTGTGTG 1 chr13:93571836-93571936 ( 44) GTGTGTGTGTGTGTGTGTGTG 1 chr2:72740842-72740942 ( 2) GTGTGTGTGTGTGTGTGTGTG 1 chr18:39855615-39855715 ( 13) GGGGGTGGGGGTGGGGGTGGG 1 chr1:98351286-98351386 ( 80) GTGTGTGTGTGAGTGTGTGTG 1 chr10:66920371-66920471 ( 77) GGCTGGGGGGGGGGGGGGGAG 1 chr17:70700429-70700529 ( 66) GTATGGGGCGGGGGGGGGGGG 1 chr18:35855239-35855339 ( 47) GTGGGGGCTGGGGTGTGTGTG 1 chr13:43023274-43023374 ( 51) GTGTGTGTGTGTCTGTGTGTG 1 chr11:112970649-11297074 ( 27) GTGTATATGTGTGAGTGGGTG 1 chr3:125466881-125466981 ( 1) GAGAGGGAGGGAGAGAGGGTG 1 chr14:64317472-64317572 ( 54) GGGAGGAGGAGGGGGAGGAGG 1 chr10:119015038-11901513 ( 75) GGGAGGGTGAGGAGGTGGAAG 1 chr10:43096560-43096660 ( 48) GTGTGTGAGTGTGTATGTGTG 1 chr2:38402546-38402646 ( 60) GTGAGTGCGTGAGTGTGTAGG 1 chr19:40947377-40947477 ( 61) TTGTGTATGTGGGTGTGGGGG 1 chr14:93637053-93637153 ( 44) GGGTGAGAGTGGGAGAGTAGG 1 chr15:12362576-12362676 ( 70) CTGTGAATGAGTGAGTGGGAG 1 chr11:75231148-75231248 ( 2) CAGGGAATGGGAGGGTGTGGG 1 chr6:36206601-36206701 ( 74) GTGAGTGGGAAGGGGTGGGGA 1 chr15:97507812-97507912 ( 23) CTTGGGGGCGGGAGGTGGGGG 1 chr11:117414782-11741488 ( 39) GGGTGGAGGAGGGGCGGGGAG 1 chr5:128323242-128323342 ( 54) GAGAGGAGGGAGGAGAGGAGG 1 chr1:145344766-145344866 ( 20) GATGGAGGGAGAGAGTGTGGG 1 chr6:107983430-107983530 ( 8) GTATGTGTGTGTGTATGTGTG 1 chr1:151124964-151125064 ( 57) CGGTGAAGCTGTGGGTGTGGG 1 chr7:63554429-63554529 ( 35) GATGGCAGGGGGGGGGGAGTG 1 chr4:120047129-120047229 ( 5) GTGAGTAGGGAGGAAGGGATG 1 chr17:14174348-14174448 ( 9) GGTGGGATGGGGCTGTGTATG 1 chr19:26512442-26512542 ( 44) GTGGGAGGTGAGAGGTGGGAG 1 chr8:15942450-15942550 ( 31) GAATATGTGTGGGAGTGGATG 1 chr3:80672165-80672265 ( 35) GGGAGTGAGTGGGTAGGAGAG 1 chr7:83014641-83014741 ( 15) CTCTGTGTGGGTATGTGTGTG 1 chr2:167146603-167146703 ( 25) GAGAGAGACGGGGGAGGGGAG 1 chr18:81861821-81861921 ( 60) GTTTCGGGGAGTGAGGGAGTG 1 chr8:14536586-14536686 ( 17) CTGGGGGTGGGGCTTGGGGTG 1 chr15:27731597-27731697 ( 1) GGCGGTGGGTAGGAGGGGAAG 1 chr2:90612175-90612275 ( 47) GGTAGTAGGAGAGAGAGTGAG 1 chr4:127400148-127400248 ( 12) GAGTGGGCCGGAGAATGTATG 1 chr3:130351600-130351700 ( 31) GGTGGGGGCGGTAGGTGCGAG 1 chrX:64546085-64546185 ( 7) GAGGCAATGAAGGAGTGGGTG 1 chr13:97007313-97007413 ( 13) GTGAGTGTGGAGGGTGGAAAG 1 chr2:43241882-43241982 ( 22) CTGTGGATCTAGGTGAGAGTG 1 chr19:58896291-58896391 ( 23) GGGAGAGAGAGAGAGAGAGAG 1 chr11:108799621-10879972 ( 49) GAGAAGGCGTGGGGGCGGATG 1 chr4:4971796-4971896 ( 25) GTGAATAGGAGGGAGGGAAGG 1 chr12:26227730-26227830 ( 63) GGAGGGAAGGGGAGGGGAGGG 1 chr18:77257600-77257700 ( 25) CGATGTGCCGGGGGATGGGTG 1 chr1:123414378-123414478 ( 52) GTGTCAGCGGGAGGGTGAGTA 1 chr5:101365313-101365413 ( 19) GTTGGCGGCGAGAAGTGTGAG 1 chr1:135561250-135561350 ( 62) GATTGAGTGGGTGGTAGGAAG 1 chr2:43003370-43003470 ( 21) GAGTGGGTGAAGCAGAGGAAG 1 chr1:89193511-89193611 ( 26) GAGAGAGTGGGCGGCTGGAGG 1 chr6:56302568-56302668 ( 10) GTGTGTACGTGTGTGTGCATA 1 chr1:21508429-21508529 ( 40) GTGTGAAAGAGAGAGAGAAAG 1 chr4:53486285-53486385 ( 39) GTGTGGGTGGGCTTGTGAGAG 1 chr13:44235163-44235263 ( 51) GGGTGGATGGAGCTGAGCGAG 1 chr14:64585696-64585796 ( 29) GGTGGAGTGGGGGAGCGGAGA 1 chr18:69290812-69290912 ( 48) TGTGGGAGGTGGGAGCGTGTG 1 chr18:41813430-41813530 ( 37) GAGAGTGCTGGAGAGTGAAGG 1 chr9:46632553-46632653 ( 57) CTGAGTAATGGGGTGGGTATG 1 chr4:78012231-78012331 ( 1) GTAAGGAGCTGGAAGAGGAAG 1 chr4:27979148-27979248 ( 25) GAGTGGGCGGAGAAAAGTATG 1 chr5:51475088-51475188 ( 62) CAGGGTGCCTGTGGGTTGGTG 1 chr18:43238231-43238331 ( 50) GTTAGAGTGGGTAGATGTGTA 1 chr9:4605352-4605452 ( 50) CAGAGGAAGAGGAAGAGTGAG 1 chr2:8109487-8109587 ( 63) GTTGAAGTGGGTGTGAGTGAA 1 chr16:96843676-96843776 ( 14) GGGTGCGGCTGTCAGTGCGAG 1 chr1:190761698-190761798 ( 5) GGAAAGGGGTGGAGGAGGAAG 1 chr1:124332330-124332430 ( 3) GTTGCAGTGAGTATGTGGAGG 1 chr6:74031382-74031482 ( 65) CAGTGTATCAGAGTGAGAGAG 1 chr9:48638097-48638197 ( 26) GGTGGGAGCTAAAAGTGGATG 1 chr3:52685764-52685864 ( 53) TTTAGTACGGGTGTGGGAGGG 1 chr16:95382482-95382582 ( 36) CTTAATGTCGATGTGTGGGAG 1 chr4:102511401-102511501 ( 46) CTCTGTAGCGAAGGGTGGAGG 1 chr12:105427284-10542738 ( 1) GGGGAGGTGTGGTAATGTGTG 1 chr19:44364026-44364126 ( 54) GTGTGAAACGAGGGGGTGGAG 1 chr10:98943586-98943686 ( 74) TTGTGGGTGGACGATTGGGTG 1 chr10:31253082-31253182 ( 32) GACAGCATGTATGTGTGTGGG 1 chr4:102618961-102619061 ( 45) GGAAGGAGGTAGGAGTGTAAA 1 chr5:16241121-16241221 ( 12) CAGTGTGGGTGAGGTGGGATA 1 chr3:143220380-143220480 ( 59) GTGAAGAGGTGTATTGGTGAG 1 chr11:91252658-91252758 ( 57) CATTCCATCTGGGAGTGGGTG 1 chr10:18496998-18497098 ( 23) GTGGGTGGGAAAGGCAGTGGA 1 chr2:7012169-7012269 ( 22) GTGGCTGATGGGAAGGGAGAG 1 chr3:20666979-20667079 ( 68) GAGAAGATGTGGAGAAGGAGG 1 chr19:46875747-46875847 ( 48) GGAGGTGGCAGGGACAGTAGG 1 chr15:36737992-36738092 ( 8) GAGGCAGGGGGAGGAGGGATA 1 chr3:88214173-88214273 ( 65) GTGTGAAGGGATGAATGAAAA 1 chr5:81590322-81590422 ( 50) GTTAGAGACTGAATGAGTAGG 1 chr7:144316731-144316831 ( 3) CAAACTGTGTGGCTGGGGGTG 1 chr1:109932661-109932761 ( 67) GTGTAGATCTATGAGTTTGGG 1 chr15:69092173-69092273 ( 67) CACGGGGACTGAAGGAGGGAG 1 chr6:24344191-24344291 ( 76) GTGTGTGTGAGTGTTGTGGAA 1 chr7:143295513-143295613 ( 26) CTTGCCGCGAGGAGGGGGAGG 1 chr15:27808082-27808182 ( 41) GATGGAGCGTAGAACCGTGTG 1 chr1:21499818-21499918 ( 52) TTGTGTGTTAAACTGTGTGTG 1 chr16:94962484-94962584 ( 32) TGTGGGACGGAACTGTGAGTG 1 chr4:97751630-97751730 ( 49) CGTGGGGTGGGAGGACGCGTA 1 chr3:50300861-50300961 ( 23) GACTGCGCTGGGAGATGAGTG 1 chr2:71638536-71638636 ( 80) GGTTCGGGCGGGGATGATGTG 1 chr9:40634636-40634736 ( 37) GTTAAAAACGATGTTTGTATG 1 chr12:71949991-71950091 ( 36) GTAGAGAGCGGCGGCGGCATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGDGDRKGKGKGDGTGKRDG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.9294 E= 4.6e-095 -1339 -23 179 -232 -15 -1339 20 82 -145 -174 145 -27 0 -1339 45 58 -121 -123 184 -1339 -39 -174 73 34 34 -1339 156 -1339 -100 -64 58 48 -1339 9 168 -210 -52 -1339 100 38 -21 -1339 179 -1339 -45 -255 109 5 -45 -138 166 -391 26 -1339 66 18 -100 -197 171 -174 -39 -223 15 82 -491 -1339 212 -291 -74 -197 87 41 30 -1339 158 -1339 9 -1339 26 65 -121 -1339 200 -1339 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGDGDRKGKGKGDGTGKRDG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 107 E= 4.6e-095 0.000000 0.186916 0.757009 0.056075 0.252336 0.000000 0.252336 0.495327 0.102804 0.065421 0.598131 0.233645 0.280374 0.000000 0.299065 0.420561 0.121495 0.093458 0.785047 0.000000 0.214953 0.065421 0.364486 0.355140 0.355140 0.000000 0.644860 0.000000 0.140187 0.140187 0.327103 0.392523 0.000000 0.233645 0.700935 0.065421 0.196262 0.000000 0.439252 0.364486 0.242991 0.000000 0.757009 0.000000 0.205607 0.037383 0.467290 0.289720 0.205607 0.084112 0.691589 0.018692 0.336449 0.000000 0.345794 0.317757 0.140187 0.056075 0.719626 0.084112 0.214953 0.046729 0.242991 0.495327 0.009346 0.000000 0.953271 0.037383 0.168224 0.056075 0.401869 0.373832 0.345794 0.000000 0.654206 0.000000 0.299065 0.000000 0.261682 0.439252 0.121495 0.000000 0.878505 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDGDGDRKGKGKGDGTGKRDG MEME-1 regular expression -------------------------------------------------------------------------------- G[TAG][GT][TGA]G[GTA][GA][TG][GC][GT][GA][GTA][GA][GAT]G[TGA]G[GT][GA][TAG]G -------------------------------------------------------------------------------- Time 538.29 secs. ******************************************************************************** ******************************************************************************** MOTIF YNRCCACHAGRKGGCRSY MEME-2 width = 18 sites = 44 llr = 555 E-value = 2.5e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif YNRCCACHAGRKGGCRSY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 123::9:38:3:::23:1 pos.-specific C 5318a:73::::::6:63 probability G 1341::3::a66a9:731 matrix T 3221:1:42:14::2::5 bits 2.2 * * 2.0 * * * 1.8 * * * 1.5 * * ** Relative 1.3 **** * ** Entropy 1.1 **** * ** * (18.2 bits) 0.9 **** ****** ** 0.7 **** ********* 0.4 * **** ********* 0.2 * **************** 0.0 ------------------ Multilevel CGGCCACTAGGGGGCGCT consensus TCA GC AT TAGC sequence T A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YNRCCACHAGRKGGCRSY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------ chr16:78197434-78197534 + 29 4.16e-10 ACTTCAACAA CGGCCACCAGGGGGTGCT TTGCGTCTTC chr8:18924402-18924502 - 1 5.66e-10 CTGGTGCCAT CTGCCACTAGGTGGCGCT chr15:8589671-8589771 - 64 2.60e-09 ATTCCAGGAT CTGCCACCAGAGGGCACT GACGCAAACC chr15:43036854-43036954 + 19 6.57e-09 ATATATATGT CCACCACAAGGGGGCAGT AATTCACTTT chr15:68077331-68077431 - 51 1.52e-08 AGACAATGGG CCACCAGTAGGGGGAGCT AGAATTCCCT chr2:142859528-142859628 + 31 2.39e-08 AGCAAAAAAT CAACCACAAGAGGGCACT GCTGAAACAA chr3:31433174-31433274 - 21 2.39e-08 GATCAGTTAT GCTCCAGTAGGGGGCGCT GCACCCACGG chr4:118083566-118083666 - 27 3.19e-08 CAGTCGGCCT GGGCCACAAGGGGGCAGC AGAACCCTTT chr14:21678404-21678504 + 67 3.19e-08 GTCCCTCAGG CCTCCACTTGGTGGCGCT CTAGAGCCCA chr16:21727817-21727917 - 18 3.19e-08 GGTTTTCTCT TCTCCACCAGATGGCGCT GTTGAGTAGT chr1:51944780-51944880 - 60 3.19e-08 AAACAAAAAC TGTCCACCAGGTGGCACT CATTCCTCCG chr10:23611146-23611246 - 22 3.68e-08 AAAGCTATTG GCACCACCAGGGGGTGCC AAAGGACAGC chr10:69654795-69654895 - 25 5.52e-08 AATTTACCAT TGGCCACTAGGGGGAGCG GTTGTTCCTT chr1:91211066-91211166 - 66 7.14e-08 GAGATTCCAG TGCCCACCAGAGGGCACC ACTCACTACA chr9:100917044-100917144 - 61 7.14e-08 ATTGTAGAAA CCATCACTAGGGGGCACT GGAGCAAAGA chr3:101462194-101462294 - 53 9.16e-08 TGAAGCCTTC TAGCCACTTGAGGGCGCC ATCACCATTT chr13:6836681-6836781 + 53 1.85e-07 CTGCCCACTA CTTCCAGAAGAGGGTGCT CGTGACATAC chr12:24603216-24603316 + 44 2.86e-07 CTGTTGTATC TGACCACTGGAGGGCGCC TGGAACCTTC chr2:51830234-51830334 - 43 3.18e-07 CAAGTCTGTT CGGTCAGCAGAGGGAGCT CCAATCAGGA chr7:79493851-79493951 + 11 3.53e-07 ATTGTCACAG TTGCCACATGGTGGCGCA CCTGCCCTTG chr10:102449365-10244946 + 82 3.91e-07 TTATCAGTTG TGACCACTAGGTGGCGAC A chr3:50300861-50300961 - 64 5.83e-07 TTCCCAAACT AGACCACTTGGGGGCAGC ATAGCGCAGA chr1:109932661-109932761 - 6 7.07e-07 AGACGCTGGT CTCTCACCAGGGGGAGGT TATGG chr13:94941190-94941290 - 42 8.52e-07 TTGACAGAGG TTGCCAGCAGGTGGCGTT CTTCTATTGC chr16:28793046-28793146 - 13 9.34e-07 TGTTCCCCAA GAGCCTCTAGGGGGCAGC AGAGTAGCAG chr18:30882613-30882713 - 14 1.02e-06 CACTGAGCCA CCTCCAGCAGGGGAAGCT AAGAAAACAG chr7:88027376-88027476 - 20 1.34e-06 ACCAAGGCTG CTGGCAGAAGGTGGTGGT TGCCACACGC chr7:110164679-110164779 - 44 1.34e-06 CGGCTGCGCA CTGGCACCACGGGGCGGC GCAGACTTCT chr6:121560844-121560944 + 41 1.46e-06 GAACATTTTA CAACCTGTTGGTGGCGCT GCTGCACAAT chr13:113877355-11387745 + 42 1.59e-06 TGTGTCACAT CAGTCAGTAGATGGCAGT ACTGTTCCAC chr16:86882473-86882573 - 32 1.89e-06 GGACTCTTTT CGGACACAAGATGGCAGT AGCACACCGT chr16:43625949-43626049 + 67 2.23e-06 AGGCTGTTTT TCTCCAGAAGAGGGTGGA GTACACACAC chr8:79612940-79613040 + 26 2.23e-06 ctcacttctc caaccacaagtgggaagc agagagaatg chr2:7051067-7051167 - 3 3.07e-06 AGTCATGACT CACCCACCTGTGGGCGGA TT chr15:10921061-10921161 + 33 3.07e-06 TTGTTTCTAA GGTCCGGCAGAGGGTGCT ATTGCCCAAC chr13:105223089-10522318 - 50 3.87e-06 TGTCCCACAT AAACCAGAAGGTGGCAGA GAGGAGAGAG chr2:78021881-78021981 - 67 3.87e-06 ATATAATATC ATACCACAAGGGGTCAGT ATTTCTTTTT chr3:116327161-116327261 - 43 4.50e-06 TTATGCAAAT CGGCCAGTAGGTGTTGGG GATGGTACTG chr2:135439417-135439517 + 22 4.50e-06 ATACATTATT TCCCCACTAGAGGGCAAA AATGACTCCA chr1:135561250-135561350 - 34 5.61e-06 GCTGCCTGTT CAGCCTCAAGGCGGTGCC TCCCCAGCTG chr6:13350647-13350747 - 15 5.61e-06 GGCAAGCATT ACACCACTGGATGGTGCC CTTTGCCATG chr11:117414782-11741488 - 12 6.47e-06 CTTCAGGGCC CGCCCACCTGGGGAAGCG CCTCTCCTCC chr14:74700427-74700527 + 61 1.52e-05 TCTTGAAGTG TTGCCACGTGTTGGAGCT GGCAGGTTGA chr12:46399047-46399147 - 55 5.63e-05 CAGTAGCCCA GCGGCGCCACATGGCGCG GTTCGCATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YNRCCACHAGRKGGCRSY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:78197434-78197534 4.2e-10 28_[+2]_54 chr8:18924402-18924502 5.7e-10 [-2]_82 chr15:8589671-8589771 2.6e-09 63_[-2]_19 chr15:43036854-43036954 6.6e-09 18_[+2]_64 chr15:68077331-68077431 1.5e-08 50_[-2]_32 chr2:142859528-142859628 2.4e-08 30_[+2]_52 chr3:31433174-31433274 2.4e-08 20_[-2]_62 chr4:118083566-118083666 3.2e-08 26_[-2]_56 chr14:21678404-21678504 3.2e-08 66_[+2]_16 chr16:21727817-21727917 3.2e-08 17_[-2]_65 chr1:51944780-51944880 3.2e-08 59_[-2]_23 chr10:23611146-23611246 3.7e-08 21_[-2]_61 chr10:69654795-69654895 5.5e-08 24_[-2]_58 chr1:91211066-91211166 7.1e-08 65_[-2]_17 chr9:100917044-100917144 7.1e-08 60_[-2]_22 chr3:101462194-101462294 9.2e-08 52_[-2]_30 chr13:6836681-6836781 1.8e-07 52_[+2]_30 chr12:24603216-24603316 2.9e-07 43_[+2]_39 chr2:51830234-51830334 3.2e-07 42_[-2]_40 chr7:79493851-79493951 3.5e-07 10_[+2]_72 chr10:102449365-10244946 3.9e-07 81_[+2]_1 chr3:50300861-50300961 5.8e-07 63_[-2]_19 chr1:109932661-109932761 7.1e-07 5_[-2]_77 chr13:94941190-94941290 8.5e-07 41_[-2]_41 chr16:28793046-28793146 9.3e-07 12_[-2]_70 chr18:30882613-30882713 1e-06 13_[-2]_69 chr7:88027376-88027476 1.3e-06 19_[-2]_63 chr7:110164679-110164779 1.3e-06 43_[-2]_39 chr6:121560844-121560944 1.5e-06 40_[+2]_42 chr13:113877355-11387745 1.6e-06 41_[+2]_41 chr16:86882473-86882573 1.9e-06 31_[-2]_51 chr16:43625949-43626049 2.2e-06 66_[+2]_16 chr8:79612940-79613040 2.2e-06 25_[+2]_57 chr2:7051067-7051167 3.1e-06 2_[-2]_80 chr15:10921061-10921161 3.1e-06 32_[+2]_50 chr13:105223089-10522318 3.9e-06 49_[-2]_33 chr2:78021881-78021981 3.9e-06 66_[-2]_16 chr3:116327161-116327261 4.5e-06 42_[-2]_40 chr2:135439417-135439517 4.5e-06 21_[+2]_61 chr1:135561250-135561350 5.6e-06 33_[-2]_49 chr6:13350647-13350747 5.6e-06 14_[-2]_68 chr11:117414782-11741488 6.5e-06 11_[-2]_71 chr14:74700427-74700527 1.5e-05 60_[+2]_22 chr12:46399047-46399147 5.6e-05 54_[-2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YNRCCACHAGRKGGCRSY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YNRCCACHAGRKGGCRSY width=18 seqs=44 chr16:78197434-78197534 ( 29) CGGCCACCAGGGGGTGCT 1 chr8:18924402-18924502 ( 1) CTGCCACTAGGTGGCGCT 1 chr15:8589671-8589771 ( 64) CTGCCACCAGAGGGCACT 1 chr15:43036854-43036954 ( 19) CCACCACAAGGGGGCAGT 1 chr15:68077331-68077431 ( 51) CCACCAGTAGGGGGAGCT 1 chr2:142859528-142859628 ( 31) CAACCACAAGAGGGCACT 1 chr3:31433174-31433274 ( 21) GCTCCAGTAGGGGGCGCT 1 chr4:118083566-118083666 ( 27) GGGCCACAAGGGGGCAGC 1 chr14:21678404-21678504 ( 67) CCTCCACTTGGTGGCGCT 1 chr16:21727817-21727917 ( 18) TCTCCACCAGATGGCGCT 1 chr1:51944780-51944880 ( 60) TGTCCACCAGGTGGCACT 1 chr10:23611146-23611246 ( 22) GCACCACCAGGGGGTGCC 1 chr10:69654795-69654895 ( 25) TGGCCACTAGGGGGAGCG 1 chr1:91211066-91211166 ( 66) TGCCCACCAGAGGGCACC 1 chr9:100917044-100917144 ( 61) CCATCACTAGGGGGCACT 1 chr3:101462194-101462294 ( 53) TAGCCACTTGAGGGCGCC 1 chr13:6836681-6836781 ( 53) CTTCCAGAAGAGGGTGCT 1 chr12:24603216-24603316 ( 44) TGACCACTGGAGGGCGCC 1 chr2:51830234-51830334 ( 43) CGGTCAGCAGAGGGAGCT 1 chr7:79493851-79493951 ( 11) TTGCCACATGGTGGCGCA 1 chr10:102449365-10244946 ( 82) TGACCACTAGGTGGCGAC 1 chr3:50300861-50300961 ( 64) AGACCACTTGGGGGCAGC 1 chr1:109932661-109932761 ( 6) CTCTCACCAGGGGGAGGT 1 chr13:94941190-94941290 ( 42) TTGCCAGCAGGTGGCGTT 1 chr16:28793046-28793146 ( 13) GAGCCTCTAGGGGGCAGC 1 chr18:30882613-30882713 ( 14) CCTCCAGCAGGGGAAGCT 1 chr7:88027376-88027476 ( 20) CTGGCAGAAGGTGGTGGT 1 chr7:110164679-110164779 ( 44) CTGGCACCACGGGGCGGC 1 chr6:121560844-121560944 ( 41) CAACCTGTTGGTGGCGCT 1 chr13:113877355-11387745 ( 42) CAGTCAGTAGATGGCAGT 1 chr16:86882473-86882573 ( 32) CGGACACAAGATGGCAGT 1 chr16:43625949-43626049 ( 67) TCTCCAGAAGAGGGTGGA 1 chr8:79612940-79613040 ( 26) CAACCACAAGTGGGAAGC 1 chr2:7051067-7051167 ( 3) CACCCACCTGTGGGCGGA 1 chr15:10921061-10921161 ( 33) GGTCCGGCAGAGGGTGCT 1 chr13:105223089-10522318 ( 50) AAACCAGAAGGTGGCAGA 1 chr2:78021881-78021981 ( 67) ATACCACAAGGGGTCAGT 1 chr3:116327161-116327261 ( 43) CGGCCAGTAGGTGTTGGG 1 chr2:135439417-135439517 ( 22) TCCCCACTAGAGGGCAAA 1 chr1:135561250-135561350 ( 34) CAGCCTCAAGGCGGTGCC 1 chr6:13350647-13350747 ( 15) ACACCACTGGATGGTGCC 1 chr11:117414782-11741488 ( 12) CGCCCACCTGGGGAAGCG 1 chr14:74700427-74700527 ( 61) TTGCCACGTGTTGGAGCT 1 chr12:46399047-46399147 ( 55) GCGGCGCCACATGGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YNRCCACHAGRKGGCRSY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 18 n= 49800 bayes= 10.4985 E= 2.5e-034 -163 119 -68 -4 -46 32 43 -31 7 -95 90 -63 -362 190 -168 -163 -1210 219 -1210 -1210 166 -1210 -227 -204 -1210 168 43 -1210 -4 64 -327 37 146 -1210 -227 -63 -1210 -227 212 -1210 28 -1210 143 -204 -1210 -327 148 37 -1210 -1210 219 -1210 -263 -1210 205 -263 -63 148 -1210 -46 28 -1210 159 -1210 -263 143 64 -362 -130 32 -127 90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YNRCCACHAGRKGGCRSY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 18 nsites= 44 E= 2.5e-034 0.090909 0.500000 0.136364 0.272727 0.204545 0.272727 0.295455 0.227273 0.295455 0.113636 0.409091 0.181818 0.022727 0.818182 0.068182 0.090909 0.000000 1.000000 0.000000 0.000000 0.886364 0.000000 0.045455 0.068182 0.000000 0.704545 0.295455 0.000000 0.272727 0.340909 0.022727 0.363636 0.772727 0.000000 0.045455 0.181818 0.000000 0.045455 0.954545 0.000000 0.340909 0.000000 0.590909 0.068182 0.000000 0.022727 0.613636 0.363636 0.000000 0.000000 1.000000 0.000000 0.045455 0.000000 0.909091 0.045455 0.181818 0.613636 0.000000 0.204545 0.340909 0.000000 0.659091 0.000000 0.045455 0.590909 0.340909 0.022727 0.113636 0.272727 0.090909 0.522727 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YNRCCACHAGRKGGCRSY MEME-2 regular expression -------------------------------------------------------------------------------- [CT][GCTA][GA]CCA[CG][TCA]AG[GA][GT]GG[CT][GA][CG][TC] -------------------------------------------------------------------------------- Time 1010.92 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGACTCAKM MEME-3 width = 10 sites = 63 llr = 622 E-value = 4.3e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGACTCAKM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4::a::1a:3 pos.-specific C 1:::7:9:15 probability G 5:a:3:::61 matrix T :a:::a::3: bits 2.2 * 2.0 * 1.8 *** ** 1.5 *** *** Relative 1.3 ******* Entropy 1.1 ******* (14.2 bits) 0.9 ******* 0.7 ********* 0.4 ********** 0.2 ********** 0.0 ---------- Multilevel GTGACTCAGC consensus A G TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAKM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------- chr19:29889140-29889240 + 72 6.88e-07 TGTTACAACC GTGACTCAGC ACCAAGAAAA chr2:90612175-90612275 + 16 6.88e-07 CCCAGTAGCT GTGACTCAGC AGGAAGCCGG chr13:38602936-38603036 - 64 1.57e-06 GTGTCTGTGC ATGACTCAGC TGCGCAGTGA chr1:124332330-124332430 - 62 1.57e-06 TTGGGAGGGA ATGACTCAGC TATGCCACAG chr1:153304458-153304558 - 66 1.57e-06 TTTCATTTCC ATGACTCAGC ACTCCGATTA chr10:99841128-99841228 + 48 1.57e-06 GACAGGACAG ATGACTCAGC CCATTCACAT chr1:36896443-36896543 - 43 1.57e-06 AGTTTACTTC ATGACTCAGC TTGCCAAAAT chr13:40673912-40674012 + 27 1.57e-06 agatactgct atgactcagc cgtttttaca chr19:16292923-16293023 - 12 1.57e-06 ACCTTTCCAA ATGACTCAGC AACTCATCTT chr13:101632719-10163281 + 73 3.14e-06 ACCTGCTCTG GTGACTCATC TGTCACCACA chr5:43561540-43561640 - 6 3.14e-06 TCAGTACACA GTGAGTCAGC TCACT chr6:84661650-84661750 + 62 3.14e-06 ACTTCACTCA GTGAGTCAGC AGATCTGGCA chr13:30865458-30865558 + 28 3.14e-06 CTCTGGAATG GTGACTCATC CAGGGCCCTC chr11:91252658-91252758 - 32 3.14e-06 GCTGAGGTTC GTGACTCATC TTTCTATTAC chr3:144437806-144437906 + 13 3.14e-06 gctctgctca gtgactcatc tctgcagctc chr7:101538004-101538104 - 37 4.02e-06 GCATTCCGTG GTGACTCAGA TGAACTGCCT chr9:61278451-61278551 - 53 4.02e-06 GGGTGGGACT GTGACTCAGA GAGGGTGGCA chr2:68040736-68040836 - 19 4.02e-06 TCATTACACA GTGACTCAGA GTCAGGCGTC chr15:30276627-30276727 + 40 6.73e-06 TGTGGTTCCC ATGAGTCAGC ACCCTGGTAT chr2:52938214-52938314 - 44 6.73e-06 GAAGTATTTC ATGACTCATC AAGTACTGGA chr11:71995899-71995999 - 59 9.23e-06 TTGTCTTGCT ATGACTCAGA TAGGAGAAGA chr12:45942342-45942442 + 55 9.23e-06 AACCTACACA GTGACTCACC CTCCAAAACC chr3:52685764-52685864 - 28 9.23e-06 ACTCCAGGGT GTGACTCAGG GAGTGTGGAA chr5:133047377-133047477 + 78 9.23e-06 ACAGATGGAC ATGACTCAGA TTCGGCACAC chr18:64685019-64685119 - 65 9.23e-06 GCAATTGGTG GTGACTCACC CAACCTAGAT chr1:191438499-191438599 - 78 9.23e-06 CATGGGGCGT GTGACTCACC AGCCTTGGTC chrX:103086865-103086965 + 40 9.23e-06 GGGAAAGAGG ATGACTCAGA CACTGCAGAA chr9:40746851-40746951 + 72 1.01e-05 TGAACGTGCA GTGAGTCATC TGGAGAAGGG chr1:132945694-132945794 - 39 1.21e-05 CTGCAGAGGA GTGAGTCAGA AAGCCGAGGA chr14:47533460-47533560 + 26 1.21e-05 TAAGTTTGTT GTGACTCATA ACTGGGATAA chrX:164637454-164637554 - 21 1.21e-05 AATTAGCAGA GTGAGTCAGA GAAAAATACT chr1:25291607-25291707 - 4 1.66e-05 AGGTGAAGAA ATGAGTCATC TGC chr8:86201762-86201862 + 82 1.66e-05 TTACTGCTCT CTGACTCATC CTCAAAGCT chr3:35066789-35066889 + 40 1.66e-05 TGACTCACTA CTGAGTCAGC CTGCAAAGGC chr1:40139877-40139977 + 11 1.66e-05 GCCCGTCTTT CTGAGTCAGC TCGTACTCAG chr10:56914022-56914122 + 4 1.66e-05 TGT CTGAGTCAGC CTGCCTTCAT chr7:143295513-143295613 - 88 1.66e-05 TCT CTGAGTCAGC ACGGCACAAG chr18:81742475-81742575 + 28 2.23e-05 GGATGTGATA CTGACTCAGA GGGTTAGAAA chr1:159888519-159888619 + 85 2.23e-05 TAGCCAATGT ATGAGTCAGA GAAGTT chr7:105449303-105449403 - 16 2.23e-05 TACAACCATC GTGACTCATG TTCCAGAGAA chr13:108386018-10838611 + 18 2.23e-05 TAGTATTTTT ATGAGTCAGA CTTTTGATGA chr2:77788938-77789038 - 3 2.23e-05 CACAGGACCT GTGACTCATG AG chr15:67659719-67659819 + 43 2.32e-05 CATTATATTT GTGACTCACA TTCAGGTGGG chr8:38757148-38757248 + 16 2.32e-05 TCACAACAAT GTGACTCACA ACAGTGTAAG chr4:37120231-37120331 + 27 2.43e-05 ATTTTATCTT GTGAGTCATA CTCTTTACGG chr12:51402007-51402107 + 49 2.43e-05 GGGAGCAACA GTGAGTCATA TGAGACCGTA chr4:86987572-86987672 - 73 3.00e-05 TAGGGAAGAC ATGAGTCAGG TAGTTTGGAG chr18:71680422-71680522 + 23 3.00e-05 TTCAGCTATA ATGACTCATG CTGTGAGAAA chr18:26086079-26086179 - 1 3.00e-05 TCTCCCTCCA ATGACTCATG chr15:37607467-37607567 + 32 3.00e-05 AGACTGAGAA ATGAGTCACC ATGACATCAG chr15:40364085-40364185 + 51 3.27e-05 CCTTGACTTC ATGACTCACA CAATCTATAT chr5:52617643-52617743 + 53 3.27e-05 gctcagaacc gtgactAAGC CCTGCTGCTT chr4:37246803-37246903 + 67 3.27e-05 TGTCTGCACT GTGACTAAGC TATAGACTAT chr1:21499818-21499918 + 21 3.27e-05 TAGCTGGCTG GTGACTAAGC AAGGGTATAT chr13:99069731-99069831 + 25 4.27e-05 ATGGGAGGGA ATGACTCACG TGTGGGTCGG chr15:68196452-68196552 - 72 4.47e-05 GCATCTCCCA GTGACTCATT CTGCAGATGC chr11:29428721-29428821 - 56 4.47e-05 AAAACCCACA GTGAGTCAGT GGCAGAATTC chr3:123722538-123722638 + 60 4.47e-05 TGCAGTCGCA GTGACTCATT CCTGAGAAGC chr3:159029935-159030035 - 1 4.93e-05 TGGGGAGGAA ATGAGTCATG chr5:36918926-36919026 - 20 6.34e-05 GATCGTGGGT CTGACTCGGC CCCTCTAGAC chr10:11049250-11049350 - 27 6.34e-05 GGATATCTTA ATGACTCGTC TCCTTGTCAT chr11:17086022-17086122 + 43 6.34e-05 CTAAAATTTA CTGACTCGGC AGAAAGGGTG chr9:97765240-97765340 + 53 8.37e-05 CAGATGTGCA GTGACTAATA CATCTGTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAKM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:29889140-29889240 6.9e-07 71_[+3]_19 chr2:90612175-90612275 6.9e-07 15_[+3]_75 chr13:38602936-38603036 1.6e-06 63_[-3]_27 chr1:124332330-124332430 1.6e-06 61_[-3]_29 chr1:153304458-153304558 1.6e-06 65_[-3]_25 chr10:99841128-99841228 1.6e-06 47_[+3]_43 chr1:36896443-36896543 1.6e-06 42_[-3]_48 chr13:40673912-40674012 1.6e-06 26_[+3]_64 chr19:16292923-16293023 1.6e-06 11_[-3]_79 chr13:101632719-10163281 3.1e-06 72_[+3]_18 chr5:43561540-43561640 3.1e-06 5_[-3]_85 chr6:84661650-84661750 3.1e-06 61_[+3]_29 chr13:30865458-30865558 3.1e-06 27_[+3]_63 chr11:91252658-91252758 3.1e-06 31_[-3]_59 chr3:144437806-144437906 3.1e-06 12_[+3]_78 chr7:101538004-101538104 4e-06 36_[-3]_54 chr9:61278451-61278551 4e-06 52_[-3]_38 chr2:68040736-68040836 4e-06 18_[-3]_72 chr15:30276627-30276727 6.7e-06 39_[+3]_51 chr2:52938214-52938314 6.7e-06 43_[-3]_47 chr11:71995899-71995999 9.2e-06 58_[-3]_32 chr12:45942342-45942442 9.2e-06 54_[+3]_36 chr3:52685764-52685864 9.2e-06 27_[-3]_63 chr5:133047377-133047477 9.2e-06 77_[+3]_13 chr18:64685019-64685119 9.2e-06 64_[-3]_26 chr1:191438499-191438599 9.2e-06 77_[-3]_13 chrX:103086865-103086965 9.2e-06 39_[+3]_51 chr9:40746851-40746951 1e-05 71_[+3]_19 chr1:132945694-132945794 1.2e-05 38_[-3]_52 chr14:47533460-47533560 1.2e-05 25_[+3]_65 chrX:164637454-164637554 1.2e-05 20_[-3]_70 chr1:25291607-25291707 1.7e-05 3_[-3]_87 chr8:86201762-86201862 1.7e-05 81_[+3]_9 chr3:35066789-35066889 1.7e-05 39_[+3]_51 chr1:40139877-40139977 1.7e-05 10_[+3]_80 chr10:56914022-56914122 1.7e-05 3_[+3]_87 chr7:143295513-143295613 1.7e-05 87_[-3]_3 chr18:81742475-81742575 2.2e-05 27_[+3]_63 chr1:159888519-159888619 2.2e-05 84_[+3]_6 chr7:105449303-105449403 2.2e-05 15_[-3]_75 chr13:108386018-10838611 2.2e-05 17_[+3]_73 chr2:77788938-77789038 2.2e-05 2_[-3]_88 chr15:67659719-67659819 2.3e-05 42_[+3]_48 chr8:38757148-38757248 2.3e-05 15_[+3]_75 chr4:37120231-37120331 2.4e-05 26_[+3]_64 chr12:51402007-51402107 2.4e-05 48_[+3]_42 chr4:86987572-86987672 3e-05 72_[-3]_18 chr18:71680422-71680522 3e-05 22_[+3]_68 chr18:26086079-26086179 3e-05 [-3]_90 chr15:37607467-37607567 3e-05 31_[+3]_59 chr15:40364085-40364185 3.3e-05 50_[+3]_40 chr5:52617643-52617743 3.3e-05 52_[+3]_38 chr4:37246803-37246903 3.3e-05 66_[+3]_24 chr1:21499818-21499918 3.3e-05 20_[+3]_70 chr13:99069731-99069831 4.3e-05 24_[+3]_66 chr15:68196452-68196552 4.5e-05 71_[-3]_19 chr11:29428721-29428821 4.5e-05 55_[-3]_35 chr3:123722538-123722638 4.5e-05 59_[+3]_31 chr3:159029935-159030035 4.9e-05 [-3]_90 chr5:36918926-36919026 6.3e-05 19_[-3]_71 chr10:11049250-11049350 6.3e-05 26_[-3]_64 chr11:17086022-17086122 6.3e-05 42_[+3]_48 chr9:97765240-97765340 8.4e-05 52_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAKM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGACTCAKM width=10 seqs=63 chr19:29889140-29889240 ( 72) GTGACTCAGC 1 chr2:90612175-90612275 ( 16) GTGACTCAGC 1 chr13:38602936-38603036 ( 64) ATGACTCAGC 1 chr1:124332330-124332430 ( 62) ATGACTCAGC 1 chr1:153304458-153304558 ( 66) ATGACTCAGC 1 chr10:99841128-99841228 ( 48) ATGACTCAGC 1 chr1:36896443-36896543 ( 43) ATGACTCAGC 1 chr13:40673912-40674012 ( 27) ATGACTCAGC 1 chr19:16292923-16293023 ( 12) ATGACTCAGC 1 chr13:101632719-10163281 ( 73) GTGACTCATC 1 chr5:43561540-43561640 ( 6) GTGAGTCAGC 1 chr6:84661650-84661750 ( 62) GTGAGTCAGC 1 chr13:30865458-30865558 ( 28) GTGACTCATC 1 chr11:91252658-91252758 ( 32) GTGACTCATC 1 chr3:144437806-144437906 ( 13) GTGACTCATC 1 chr7:101538004-101538104 ( 37) GTGACTCAGA 1 chr9:61278451-61278551 ( 53) GTGACTCAGA 1 chr2:68040736-68040836 ( 19) GTGACTCAGA 1 chr15:30276627-30276727 ( 40) ATGAGTCAGC 1 chr2:52938214-52938314 ( 44) ATGACTCATC 1 chr11:71995899-71995999 ( 59) ATGACTCAGA 1 chr12:45942342-45942442 ( 55) GTGACTCACC 1 chr3:52685764-52685864 ( 28) GTGACTCAGG 1 chr5:133047377-133047477 ( 78) ATGACTCAGA 1 chr18:64685019-64685119 ( 65) GTGACTCACC 1 chr1:191438499-191438599 ( 78) GTGACTCACC 1 chrX:103086865-103086965 ( 40) ATGACTCAGA 1 chr9:40746851-40746951 ( 72) GTGAGTCATC 1 chr1:132945694-132945794 ( 39) GTGAGTCAGA 1 chr14:47533460-47533560 ( 26) GTGACTCATA 1 chrX:164637454-164637554 ( 21) GTGAGTCAGA 1 chr1:25291607-25291707 ( 4) ATGAGTCATC 1 chr8:86201762-86201862 ( 82) CTGACTCATC 1 chr3:35066789-35066889 ( 40) CTGAGTCAGC 1 chr1:40139877-40139977 ( 11) CTGAGTCAGC 1 chr10:56914022-56914122 ( 4) CTGAGTCAGC 1 chr7:143295513-143295613 ( 88) CTGAGTCAGC 1 chr18:81742475-81742575 ( 28) CTGACTCAGA 1 chr1:159888519-159888619 ( 85) ATGAGTCAGA 1 chr7:105449303-105449403 ( 16) GTGACTCATG 1 chr13:108386018-10838611 ( 18) ATGAGTCAGA 1 chr2:77788938-77789038 ( 3) GTGACTCATG 1 chr15:67659719-67659819 ( 43) GTGACTCACA 1 chr8:38757148-38757248 ( 16) GTGACTCACA 1 chr4:37120231-37120331 ( 27) GTGAGTCATA 1 chr12:51402007-51402107 ( 49) GTGAGTCATA 1 chr4:86987572-86987672 ( 73) ATGAGTCAGG 1 chr18:71680422-71680522 ( 23) ATGACTCATG 1 chr18:26086079-26086179 ( 1) ATGACTCATG 1 chr15:37607467-37607567 ( 32) ATGAGTCACC 1 chr15:40364085-40364185 ( 51) ATGACTCACA 1 chr5:52617643-52617743 ( 53) GTGACTAAGC 1 chr4:37246803-37246903 ( 67) GTGACTAAGC 1 chr1:21499818-21499918 ( 21) GTGACTAAGC 1 chr13:99069731-99069831 ( 25) ATGACTCACG 1 chr15:68196452-68196552 ( 72) GTGACTCATT 1 chr11:29428721-29428821 ( 56) GTGAGTCAGT 1 chr3:123722538-123722638 ( 60) GTGACTCATT 1 chr3:159029935-159030035 ( 1) ATGAGTCATG 1 chr5:36918926-36919026 ( 20) CTGACTCGGC 1 chr10:11049250-11049350 ( 27) ATGACTCGTC 1 chr11:17086022-17086122 ( 43) CTGACTCGGC 1 chr9:97765240-97765340 ( 53) GTGACTAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAKM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 54600 bayes= 10.4801 E= 4.3e-016 38 -79 121 -1262 -1262 -1262 -1262 183 -1262 -1262 219 -1262 183 -1262 -1262 -1262 -1262 167 46 -1262 -1262 -1262 -1262 183 -214 209 -1262 -1262 176 -1262 -220 -1262 -1262 -79 134 18 3 130 -79 -256 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAKM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 63 E= 4.3e-016 0.365079 0.126984 0.507937 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.698413 0.301587 0.000000 0.000000 0.000000 0.000000 1.000000 0.063492 0.936508 0.000000 0.000000 0.952381 0.000000 0.047619 0.000000 0.000000 0.126984 0.555556 0.317460 0.285714 0.539683 0.126984 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAKM MEME-3 regular expression -------------------------------------------------------------------------------- [GA]TGA[CG]TCA[GT][CA] -------------------------------------------------------------------------------- Time 1465.40 secs. ******************************************************************************** ******************************************************************************** MOTIF MCWCCCACDCM MEME-4 width = 11 sites = 107 llr = 917 E-value = 1.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCWCCCACDCM MEME-4 Description -------------------------------------------------------------------------------- Simplified A 316:2:a:5:5 pos.-specific C 47:a7a:a:63 probability G 1:::::::321 matrix T 224:1:::322 bits 2.2 * * * 2.0 * * * 1.8 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 ***** (12.4 bits) 0.9 ******* 0.7 ******* * 0.4 ********* 0.2 *********** 0.0 ----------- Multilevel CCACCCACACA consensus A T A TTC sequence GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCWCCCACDCM MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr5:125732927-125733027 - 67 1.18e-06 TCAGTTTTAA CCACCCACTCA GAGAAGCACA chr13:57956614-57956714 + 74 1.18e-06 GAAACTCACT CCACCCACTCA TTCCCAAGGG chr4:125419867-125419967 + 18 2.28e-06 CAGCCAGTCT CCACCCACTCC CAATTTGCAT chr10:31253082-31253182 - 72 2.28e-06 AGGAAGCAAA GCACCCACACA GCCCTTGGTT chr19:40947377-40947477 - 46 4.28e-06 ACACAACTAC CCACCCACATA CGCAGAGAGA chrX:99172201-99172301 + 82 5.91e-06 GCCGGCTCTG CCTCCCACTCC CTGCTGTC chr1:98351286-98351386 + 16 5.91e-06 TCACACACTC ACACCCACATA TCCCCCACAC chr18:31350160-31350260 - 37 8.13e-06 CCATCTGACT TCTCCCACACA GAAGTGCGCG chr18:30882613-30882713 - 36 8.13e-06 CATATCTCCA CCACCCACTGA GCCACCTCCA chr3:143971822-143971922 - 66 8.13e-06 AAGGAGAAGC ACACCCACAGC TACAAATGAG chr18:41813430-41813530 + 63 8.13e-06 CTCTCACAGC CCACCCACTCT CTTCAATAGT chr13:99078626-99078726 - 6 8.13e-06 AGGTTCCGCC CCACCCACTGA TGAGC chr9:30980397-30980497 + 8 8.13e-06 CAGAGCT TCACCCACTCA TATCGGTTAG chr1:191438499-191438599 - 7 8.13e-06 ACCAGTGCAT ACACCCACGGA GTAGCT chr18:77257600-77257700 - 6 8.13e-06 CGAGCAAACG CCACACACACA GTACG chr3:85340457-85340557 - 86 8.49e-06 CTCC ACTCCCACTCC AACTGCATTA chr11:22918754-22918854 + 87 1.12e-05 acacacacac acacacacaca cac chr2:97714460-97714560 - 82 1.12e-05 ACACACAC ACACACACACA CACACACACA chr18:65101545-65101645 - 80 1.12e-05 TGATAACAAA ACACCCACTCT CTCAGCTTAC chr8:112150843-112150943 - 62 1.12e-05 ACACACACAC ACACACACACA CACACACACA chr16:9452861-9452961 - 76 1.12e-05 ACTGAGAGTT CCACCCACACG TGTTCCTTAT chr10:43096560-43096660 - 69 1.12e-05 CGTGTATGTC ACACACACACA CACACATACA chr8:76198173-76198273 - 10 1.12e-05 TGTGAAATAA CCTCCCACATA CACACATAT chr13:93571836-93571936 + 65 1.12e-05 acacacacac acacacacaca cacacacaca chr5:25025628-25025728 - 36 1.12e-05 GAGAAGAGGA ACACCCACGTA CCGCTCGCTT chr17:25607994-25608094 - 72 1.33e-05 TGGGAGCACC GCACCCACAGA CTGAGCATCG chr15:20897568-20897668 - 74 1.33e-05 TTTTTACAAT CCACCCACTGC ACTCTTCTAG chr9:116505889-116505989 - 57 1.33e-05 ATGCATGTGT GCACCCACACT AGAAAAAAGA chr5:16241121-16241221 + 63 1.48e-05 ATCACCCACC TCACCCACACT GAGAGTGCCT chr13:43023274-43023374 - 6 1.48e-05 TTCTCAGTGG TCACCCACACT GTACA chr13:107719018-10771911 + 59 1.48e-05 TTGGGGAATC TCACCCACAGA TTAAATTTAC chr9:92672824-92672924 + 4 1.48e-05 aga tcacccacact caaggattgg chr18:81742475-81742575 + 51 1.88e-05 TTAGAAAGAA ATACCCACACC CTCTTTGTGG chr3:31433174-31433274 - 10 2.02e-05 AGGGGGCGCT GCACCCACGGA CATATGGGT chr17:44538854-44538954 - 57 2.42e-05 AGCCACCCTT CCTCCCACACG AAAGCTGCCA chr1:42572143-42572243 - 47 2.42e-05 GCACATTCTG ACTCCCACTGA TCTCTCCAGC chr16:43625949-43626049 + 87 2.42e-05 AGGGTGGAGT ACACACACTCA ACC chr13:30865458-30865558 - 3 2.42e-05 CCAGAGAATG CCTCCCACTTA TA chr9:86774298-86774398 - 60 2.42e-05 CAGCTCACTG ACACCCACTTC TTTCATAGTG chr3:144437806-144437906 - 75 2.42e-05 CCATCTCCCT CATCCCACACA CTTGCACTCG chr17:64274638-64274738 + 2 2.75e-05 c acacacacgcc tagcttccag chr17:11157427-11157527 - 13 2.75e-05 CGTGTCATGT GCACCCACTCT GCAAACTGTG chr18:89795724-89795824 - 20 2.75e-05 AGTCTGGAGT ACACACACGCC TACTCTGTTT chr17:85242024-85242124 - 57 2.75e-05 TATTAAACCT CCTCCCACGTC CCTCTTTCCT chr11:86930764-86930864 - 53 2.75e-05 AAGGCTTCCT GCACCCACATC TTCTGGAGGC chr3:156154414-156154514 + 39 2.75e-05 TTCTGAAGAA GTACCCACACA TCCACAGGGG chr8:60772816-60772916 - 71 2.75e-05 TGTTCTATAG CTTCCCACGCA TCTTTCTTAC chr12:13054533-13054633 - 57 3.17e-05 ATTTCAAGAT TCTCCCACAGA GCACTTAACA chr9:71818416-71818516 - 19 3.17e-05 ATGTTGCATA ACACCCACGGT GTAGATCTCA chr14:103626173-10362627 + 46 3.17e-05 AGCACAAACT ACTCCCACACG CAACTTAAAG chr2:115529770-115529870 + 76 3.17e-05 TATCTCTGAT AATCCCACACA GCTTGTGGTA chr5:52134606-52134706 - 1 3.17e-05 TAGAAGATGA AATCCCACACA chr10:76984590-76984690 - 39 3.17e-05 AATCTTAGGC TCACCCACGTA ATCCACAAGG chr11:12823194-12823294 - 44 3.52e-05 AATGCACTGC CAACCCACTCC ATGATCCTCC chr10:64483065-64483165 - 58 3.52e-05 AAAAAGTGCC CTTCCCACTCA GTAAGCTAAC chr11:49880035-49880135 - 69 4.05e-05 CATGAAGTGA ACACCCACTGT GTTAGTATTT chr6:107983430-107983530 - 83 4.05e-05 CCAGTTT GCACACACACC AGCAGTGAAT chr7:83014641-83014741 - 56 4.05e-05 TCATATGGTG TCTCCCACATA TGGAGTCTGG chr12:82782064-82782164 + 9 4.51e-05 ACTTGTCT CTACCCACAGC TTCAGCTTCC chr3:84344979-84345079 - 37 5.01e-05 TTTCCATTCC ATTCCCACGCC GGTCAGGCAA chr6:36206601-36206701 + 10 5.01e-05 CCCTCCCCT CTTCCCACTCC ATCCACAACC chr16:47445038-47445138 + 72 5.01e-05 CTCAGGCTCA GCACCCACTTC CCTCTCATCC chr11:112970649-11297074 + 53 5.84e-05 tacacacaac acactcacaca tacacatgca chr4:77648860-77648960 + 47 5.84e-05 GTTCTGTGTA CCTCACACACT ACTTTCTATA chr11:21180667-21180767 - 88 5.84e-05 AC ACACTCACACA TGAATGATGT chr2:165204867-165204967 - 30 5.84e-05 CTTACTCCAG TCTCCCACATC AGATCCATCA chr2:38402546-38402646 - 29 5.84e-05 ACATTTCTTC ACACTCACACA TTATTCCTCA chr1:163607063-163607163 + 51 5.84e-05 TATCCAGCCC ACACACACGCT GGCTTCTGTT chr18:81861821-81861921 + 47 5.84e-05 AGGTGACAAG TCACCCACGCG CAGTTTCGGG chr1:175580273-175580373 - 26 6.18e-05 AGGGTATGCA AATCCCACGCC GTGCCTGTGT chr17:5260981-5261081 + 48 7.20e-05 GGGTATGCTA GTTCCCACGCA TGTCCTCTTT chr17:86392393-86392493 - 78 7.20e-05 GTTCTAATCC CAACCCACGTA AACGGCTGCA chr1:42727620-42727720 + 33 7.20e-05 AGCCCACCAT CCACCCACTGG TCCATTTCCT chr11:53132740-53132840 + 48 7.20e-05 TGGCTCCCAG CATCCCACAGA GCTCAGTTCC chr2:4499854-4499954 + 10 7.20e-05 AGCACTGTG CCACACACTTA GCACTGTGCC chr1:190761698-190761798 - 45 7.20e-05 AGCCTGATCT ATTCCCACAGA TTAGGAGGGC chr2:167139691-167139791 - 51 7.20e-05 ATAGTTCAGG AAACCCACAGC TTTCTGTTTT chr16:72914172-72914272 + 65 7.81e-05 tcaacttctt tttcccacgca tccagaacac chr16:95382482-95382582 - 60 7.81e-05 CTCCTGCCTT TCTCACACGCA TTTCTCCCAC chr18:27724879-27724979 - 88 7.81e-05 TC CTACCCACGTC TGAAAACCAG chr5:85615998-85616098 + 18 7.81e-05 CCTGGAGGCG TTTCCCACACC TCAAAGGCAG chr1:40139877-40139977 - 75 8.65e-05 TCTGAAATTG ACTCCCACTTT CGGCTTTGAA chr6:21767635-21767735 - 6 8.65e-05 GTTGCTCCAG TCACCCACGTT CTTAT chr18:72992464-72992564 - 39 9.66e-05 GAGACGTCAT CAACACACACC AGAGCATCTG chr1:7768845-7768945 - 31 9.66e-05 CTTATAATCA CTTCCCACGTA TCTCACAGAA chr8:18924402-18924502 - 88 9.66e-05 CT CCTCACACTCT TCTAAACTCG chr6:31176462-31176562 + 30 9.66e-05 CGGGTGTGCC GCACCCACTTT GCACAGCAGT chrX:164637454-164637554 + 1 1.15e-04 . TCACTCACACA GTAtttttct chr5:81590322-81590422 + 16 1.24e-04 CTTGGGAAAC CATCCCACGGC AGAAGTGAAG chr3:84333553-84333653 - 47 1.24e-04 GGCAGCATTC CATCCCACGGC GGTTTCATAA chr9:101160038-101160138 - 36 1.24e-04 CTATTCTGGG GCTCACACAGA TGGTGTCTCA chr15:97507812-97507912 - 64 1.24e-04 TATCCTGCTT CTTCCCACTGC GCACATGACA chr3:140179420-140179520 + 86 1.36e-04 GTAGTTTCAT CATCCCACACG GCAC chr1:158575960-158576060 - 10 1.36e-04 TCTGGATTGC TCTCCCACGTT GGTTCTCTA chr15:27907191-27907291 + 53 1.46e-04 CTGAGATAAC CCACTCACGCT AGAAGTCCAG chr15:36737992-36738092 - 52 1.59e-04 AGGATGCTTC AATCCCACTTA GAAGGGGGAA chr6:117671657-117671757 + 64 1.59e-04 TCTTTAGTAA CAACCCACGTT TCTCCCTGTG chr5:101878310-101878410 + 23 1.82e-04 AGACTGGTTG ACGCCCACACT GCTGCAGGAG chr17:14174348-14174448 - 46 2.07e-04 ACCACCCATG GTTCCCACACG TGCTTTGGCA chr2:45085569-45085669 + 20 2.25e-04 AAACCACCTA CTACACACTTA CCACCTGACC chr19:58896291-58896391 + 5 2.36e-04 ACAC GTACACACaga gggagagggg chr15:76994406-76994506 - 88 2.36e-04 AC ACACCCAGACA CACAGCTTGC chr10:56914022-56914122 + 81 2.67e-04 CTGGAGATCC ATTCACACGCT GCAGCATAC chr6:35621595-35621695 - 78 2.99e-04 TGTCTCTCTG GCGCCCACATA TTTTTTATCT chr13:95912080-95912180 - 64 3.11e-04 TGCACAAAAC CAACTCACTCC GATGGCTGAT chr10:40945524-40945624 + 31 3.44e-04 ACTGAAGTTC TTACACACGGC TGGTTTGATC chr17:30321329-30321429 - 54 5.91e-04 ATGGCACTTA ACACATACGCA AGAGCTAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCWCCCACDCM MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:125732927-125733027 1.2e-06 66_[-4]_23 chr13:57956614-57956714 1.2e-06 73_[+4]_16 chr4:125419867-125419967 2.3e-06 17_[+4]_72 chr10:31253082-31253182 2.3e-06 71_[-4]_18 chr19:40947377-40947477 4.3e-06 45_[-4]_44 chrX:99172201-99172301 5.9e-06 81_[+4]_8 chr1:98351286-98351386 5.9e-06 15_[+4]_74 chr18:31350160-31350260 8.1e-06 36_[-4]_53 chr18:30882613-30882713 8.1e-06 35_[-4]_54 chr3:143971822-143971922 8.1e-06 65_[-4]_24 chr18:41813430-41813530 8.1e-06 62_[+4]_27 chr13:99078626-99078726 8.1e-06 5_[-4]_84 chr9:30980397-30980497 8.1e-06 7_[+4]_82 chr1:191438499-191438599 8.1e-06 6_[-4]_83 chr18:77257600-77257700 8.1e-06 5_[-4]_84 chr3:85340457-85340557 8.5e-06 85_[-4]_4 chr11:22918754-22918854 1.1e-05 86_[+4]_3 chr2:97714460-97714560 1.1e-05 81_[-4]_8 chr18:65101545-65101645 1.1e-05 79_[-4]_10 chr8:112150843-112150943 1.1e-05 61_[-4]_28 chr16:9452861-9452961 1.1e-05 75_[-4]_14 chr10:43096560-43096660 1.1e-05 68_[-4]_21 chr8:76198173-76198273 1.1e-05 9_[-4]_80 chr13:93571836-93571936 1.1e-05 64_[+4]_25 chr5:25025628-25025728 1.1e-05 35_[-4]_54 chr17:25607994-25608094 1.3e-05 71_[-4]_18 chr15:20897568-20897668 1.3e-05 73_[-4]_16 chr9:116505889-116505989 1.3e-05 56_[-4]_33 chr5:16241121-16241221 1.5e-05 62_[+4]_27 chr13:43023274-43023374 1.5e-05 5_[-4]_84 chr13:107719018-10771911 1.5e-05 58_[+4]_31 chr9:92672824-92672924 1.5e-05 3_[+4]_86 chr18:81742475-81742575 1.9e-05 50_[+4]_39 chr3:31433174-31433274 2e-05 9_[-4]_80 chr17:44538854-44538954 2.4e-05 56_[-4]_33 chr1:42572143-42572243 2.4e-05 46_[-4]_43 chr16:43625949-43626049 2.4e-05 86_[+4]_3 chr13:30865458-30865558 2.4e-05 2_[-4]_87 chr9:86774298-86774398 2.4e-05 59_[-4]_30 chr3:144437806-144437906 2.4e-05 74_[-4]_15 chr17:64274638-64274738 2.8e-05 1_[+4]_88 chr17:11157427-11157527 2.8e-05 12_[-4]_77 chr18:89795724-89795824 2.8e-05 19_[-4]_70 chr17:85242024-85242124 2.8e-05 56_[-4]_33 chr11:86930764-86930864 2.8e-05 52_[-4]_37 chr3:156154414-156154514 2.8e-05 38_[+4]_51 chr8:60772816-60772916 2.8e-05 70_[-4]_19 chr12:13054533-13054633 3.2e-05 56_[-4]_33 chr9:71818416-71818516 3.2e-05 18_[-4]_71 chr14:103626173-10362627 3.2e-05 45_[+4]_44 chr2:115529770-115529870 3.2e-05 75_[+4]_14 chr5:52134606-52134706 3.2e-05 [-4]_89 chr10:76984590-76984690 3.2e-05 38_[-4]_51 chr11:12823194-12823294 3.5e-05 43_[-4]_46 chr10:64483065-64483165 3.5e-05 57_[-4]_32 chr11:49880035-49880135 4e-05 68_[-4]_21 chr6:107983430-107983530 4e-05 82_[-4]_7 chr7:83014641-83014741 4e-05 55_[-4]_34 chr12:82782064-82782164 4.5e-05 8_[+4]_81 chr3:84344979-84345079 5e-05 36_[-4]_53 chr6:36206601-36206701 5e-05 9_[+4]_80 chr16:47445038-47445138 5e-05 71_[+4]_18 chr11:112970649-11297074 5.8e-05 52_[+4]_37 chr4:77648860-77648960 5.8e-05 46_[+4]_43 chr11:21180667-21180767 5.8e-05 87_[-4]_2 chr2:165204867-165204967 5.8e-05 29_[-4]_60 chr2:38402546-38402646 5.8e-05 28_[-4]_61 chr1:163607063-163607163 5.8e-05 50_[+4]_39 chr18:81861821-81861921 5.8e-05 46_[+4]_43 chr1:175580273-175580373 6.2e-05 25_[-4]_64 chr17:5260981-5261081 7.2e-05 47_[+4]_42 chr17:86392393-86392493 7.2e-05 77_[-4]_12 chr1:42727620-42727720 7.2e-05 32_[+4]_57 chr11:53132740-53132840 7.2e-05 47_[+4]_42 chr2:4499854-4499954 7.2e-05 9_[+4]_80 chr1:190761698-190761798 7.2e-05 44_[-4]_45 chr2:167139691-167139791 7.2e-05 50_[-4]_39 chr16:72914172-72914272 7.8e-05 64_[+4]_25 chr16:95382482-95382582 7.8e-05 59_[-4]_30 chr18:27724879-27724979 7.8e-05 87_[-4]_2 chr5:85615998-85616098 7.8e-05 17_[+4]_72 chr1:40139877-40139977 8.6e-05 74_[-4]_15 chr6:21767635-21767735 8.6e-05 5_[-4]_84 chr18:72992464-72992564 9.7e-05 38_[-4]_51 chr1:7768845-7768945 9.7e-05 30_[-4]_59 chr8:18924402-18924502 9.7e-05 87_[-4]_2 chr6:31176462-31176562 9.7e-05 29_[+4]_60 chrX:164637454-164637554 0.00012 [+4]_89 chr5:81590322-81590422 0.00012 15_[+4]_74 chr3:84333553-84333653 0.00012 46_[-4]_43 chr9:101160038-101160138 0.00012 35_[-4]_54 chr15:97507812-97507912 0.00012 63_[-4]_26 chr3:140179420-140179520 0.00014 85_[+4]_4 chr1:158575960-158576060 0.00014 9_[-4]_80 chr15:27907191-27907291 0.00015 52_[+4]_37 chr15:36737992-36738092 0.00016 51_[-4]_38 chr6:117671657-117671757 0.00016 63_[+4]_26 chr5:101878310-101878410 0.00018 22_[+4]_67 chr17:14174348-14174448 0.00021 45_[-4]_44 chr2:45085569-45085669 0.00022 19_[+4]_70 chr19:58896291-58896391 0.00024 4_[+4]_85 chr15:76994406-76994506 0.00024 87_[-4]_2 chr10:56914022-56914122 0.00027 80_[+4]_9 chr6:35621595-35621695 0.0003 77_[-4]_12 chr13:95912080-95912180 0.00031 63_[-4]_26 chr10:40945524-40945624 0.00034 30_[+4]_59 chr17:30321329-30321429 0.00059 53_[-4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCWCCCACDCM MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCWCCCACDCM width=11 seqs=107 chr5:125732927-125733027 ( 67) CCACCCACTCA 1 chr13:57956614-57956714 ( 74) CCACCCACTCA 1 chr4:125419867-125419967 ( 18) CCACCCACTCC 1 chr10:31253082-31253182 ( 72) GCACCCACACA 1 chr19:40947377-40947477 ( 46) CCACCCACATA 1 chrX:99172201-99172301 ( 82) CCTCCCACTCC 1 chr1:98351286-98351386 ( 16) ACACCCACATA 1 chr18:31350160-31350260 ( 37) TCTCCCACACA 1 chr18:30882613-30882713 ( 36) CCACCCACTGA 1 chr3:143971822-143971922 ( 66) ACACCCACAGC 1 chr18:41813430-41813530 ( 63) CCACCCACTCT 1 chr13:99078626-99078726 ( 6) CCACCCACTGA 1 chr9:30980397-30980497 ( 8) TCACCCACTCA 1 chr1:191438499-191438599 ( 7) ACACCCACGGA 1 chr18:77257600-77257700 ( 6) CCACACACACA 1 chr3:85340457-85340557 ( 86) ACTCCCACTCC 1 chr11:22918754-22918854 ( 87) ACACACACACA 1 chr2:97714460-97714560 ( 82) ACACACACACA 1 chr18:65101545-65101645 ( 80) ACACCCACTCT 1 chr8:112150843-112150943 ( 62) ACACACACACA 1 chr16:9452861-9452961 ( 76) CCACCCACACG 1 chr10:43096560-43096660 ( 69) ACACACACACA 1 chr8:76198173-76198273 ( 10) CCTCCCACATA 1 chr13:93571836-93571936 ( 65) ACACACACACA 1 chr5:25025628-25025728 ( 36) ACACCCACGTA 1 chr17:25607994-25608094 ( 72) GCACCCACAGA 1 chr15:20897568-20897668 ( 74) CCACCCACTGC 1 chr9:116505889-116505989 ( 57) GCACCCACACT 1 chr5:16241121-16241221 ( 63) TCACCCACACT 1 chr13:43023274-43023374 ( 6) TCACCCACACT 1 chr13:107719018-10771911 ( 59) TCACCCACAGA 1 chr9:92672824-92672924 ( 4) TCACCCACACT 1 chr18:81742475-81742575 ( 51) ATACCCACACC 1 chr3:31433174-31433274 ( 10) GCACCCACGGA 1 chr17:44538854-44538954 ( 57) CCTCCCACACG 1 chr1:42572143-42572243 ( 47) ACTCCCACTGA 1 chr16:43625949-43626049 ( 87) ACACACACTCA 1 chr13:30865458-30865558 ( 3) CCTCCCACTTA 1 chr9:86774298-86774398 ( 60) ACACCCACTTC 1 chr3:144437806-144437906 ( 75) CATCCCACACA 1 chr17:64274638-64274738 ( 2) ACACACACGCC 1 chr17:11157427-11157527 ( 13) GCACCCACTCT 1 chr18:89795724-89795824 ( 20) ACACACACGCC 1 chr17:85242024-85242124 ( 57) CCTCCCACGTC 1 chr11:86930764-86930864 ( 53) GCACCCACATC 1 chr3:156154414-156154514 ( 39) GTACCCACACA 1 chr8:60772816-60772916 ( 71) CTTCCCACGCA 1 chr12:13054533-13054633 ( 57) TCTCCCACAGA 1 chr9:71818416-71818516 ( 19) ACACCCACGGT 1 chr14:103626173-10362627 ( 46) ACTCCCACACG 1 chr2:115529770-115529870 ( 76) AATCCCACACA 1 chr5:52134606-52134706 ( 1) AATCCCACACA 1 chr10:76984590-76984690 ( 39) TCACCCACGTA 1 chr11:12823194-12823294 ( 44) CAACCCACTCC 1 chr10:64483065-64483165 ( 58) CTTCCCACTCA 1 chr11:49880035-49880135 ( 69) ACACCCACTGT 1 chr6:107983430-107983530 ( 83) GCACACACACC 1 chr7:83014641-83014741 ( 56) TCTCCCACATA 1 chr12:82782064-82782164 ( 9) CTACCCACAGC 1 chr3:84344979-84345079 ( 37) ATTCCCACGCC 1 chr6:36206601-36206701 ( 10) CTTCCCACTCC 1 chr16:47445038-47445138 ( 72) GCACCCACTTC 1 chr11:112970649-11297074 ( 53) ACACTCACACA 1 chr4:77648860-77648960 ( 47) CCTCACACACT 1 chr11:21180667-21180767 ( 88) ACACTCACACA 1 chr2:165204867-165204967 ( 30) TCTCCCACATC 1 chr2:38402546-38402646 ( 29) ACACTCACACA 1 chr1:163607063-163607163 ( 51) ACACACACGCT 1 chr18:81861821-81861921 ( 47) TCACCCACGCG 1 chr1:175580273-175580373 ( 26) AATCCCACGCC 1 chr17:5260981-5261081 ( 48) GTTCCCACGCA 1 chr17:86392393-86392493 ( 78) CAACCCACGTA 1 chr1:42727620-42727720 ( 33) CCACCCACTGG 1 chr11:53132740-53132840 ( 48) CATCCCACAGA 1 chr2:4499854-4499954 ( 10) CCACACACTTA 1 chr1:190761698-190761798 ( 45) ATTCCCACAGA 1 chr2:167139691-167139791 ( 51) AAACCCACAGC 1 chr16:72914172-72914272 ( 65) TTTCCCACGCA 1 chr16:95382482-95382582 ( 60) TCTCACACGCA 1 chr18:27724879-27724979 ( 88) CTACCCACGTC 1 chr5:85615998-85616098 ( 18) TTTCCCACACC 1 chr1:40139877-40139977 ( 75) ACTCCCACTTT 1 chr6:21767635-21767735 ( 6) TCACCCACGTT 1 chr18:72992464-72992564 ( 39) CAACACACACC 1 chr1:7768845-7768945 ( 31) CTTCCCACGTA 1 chr8:18924402-18924502 ( 88) CCTCACACTCT 1 chr6:31176462-31176562 ( 30) GCACCCACTTT 1 chrX:164637454-164637554 ( 1) TCACTCACACA 1 chr5:81590322-81590422 ( 16) CATCCCACGGC 1 chr3:84333553-84333653 ( 47) CATCCCACGGC 1 chr9:101160038-101160138 ( 36) GCTCACACAGA 1 chr15:97507812-97507912 ( 64) CTTCCCACTGC 1 chr3:140179420-140179520 ( 86) CATCCCACACG 1 chr1:158575960-158576060 ( 10) TCTCCCACGTT 1 chr15:27907191-27907291 ( 53) CCACTCACGCT 1 chr15:36737992-36738092 ( 52) AATCCCACTTA 1 chr6:117671657-117671757 ( 64) CAACCCACGTT 1 chr5:101878310-101878410 ( 23) ACGCCCACACT 1 chr17:14174348-14174448 ( 46) GTTCCCACACG 1 chr2:45085569-45085669 ( 20) CTACACACTTA 1 chr19:58896291-58896391 ( 5) GTACACACAGA 1 chr15:76994406-76994506 ( 88) ACACCCAGACA 1 chr10:56914022-56914122 ( 81) ATTCACACGCT 1 chr6:35621595-35621695 ( 78) GCGCCCACATA 1 chr13:95912080-95912180 ( 64) CAACTCACTCC 1 chr10:40945524-40945624 ( 31) TTACACACGGC 1 chr17:30321329-30321429 ( 54) ACACATACGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCWCCCACDCM MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 10.6238 E= 1.7e-005 26 70 -64 -74 -100 164 -1339 -66 114 -1339 -355 38 -1339 219 -1339 -1339 -45 175 -1339 -232 -1339 218 -1339 -491 183 -1339 -1339 -1339 -1339 218 -455 -1339 71 -1339 26 0 -1339 136 -3 -32 79 26 -174 -59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCWCCCACDCM MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 107 E= 1.7e-005 0.336449 0.355140 0.140187 0.168224 0.140187 0.682243 0.000000 0.177570 0.616822 0.000000 0.018692 0.364486 0.000000 1.000000 0.000000 0.000000 0.205607 0.738318 0.000000 0.056075 0.000000 0.990654 0.000000 0.009346 1.000000 0.000000 0.000000 0.000000 0.000000 0.990654 0.009346 0.000000 0.457944 0.000000 0.261682 0.280374 0.000000 0.560748 0.214953 0.224299 0.485981 0.261682 0.065421 0.186916 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCWCCCACDCM MEME-4 regular expression -------------------------------------------------------------------------------- [CA]C[AT]C[CA]CAC[ATG][CTG][AC] -------------------------------------------------------------------------------- Time 1906.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGRAG MEME-5 width = 8 sites = 65 llr = 583 E-value = 3.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGRAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::8::4a: pos.-specific C :2:::2:: probability G a8:aa4:a matrix T ::2::::: bits 2.2 * ** * 2.0 * ** * 1.8 * ** * 1.5 * ** ** Relative 1.3 ** ** ** Entropy 1.1 ** ** ** (12.9 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGAAG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGRAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr18:39855615-39855715 - 60 8.71e-06 AAGAAGGAAG GGAGGGAG CCGAGTGAGG chr8:15942450-15942550 - 19 8.71e-06 TGGATGAGCA GGAGGGAG CTGAGCTGAA chr6:111452506-111452606 + 9 8.71e-06 CTTCCAAA GGAGGGAG GCGGAAGCTG chr10:90606625-90606725 - 66 8.71e-06 CAGGTGGCAA GGAGGGAG ATGTCATCCA chr1:42229727-42229827 + 72 8.71e-06 CAGGGTAAGT GGAGGGAG ATTGCAGAAA chr3:109854069-109854169 - 12 8.71e-06 TCAGTTCATA GGAGGGAG TTGAAATATG chr5:128323242-128323342 - 83 8.71e-06 AGGGAGAAAG GGAGGGAG AGAGGGAGGA chr3:125466881-125466981 + 52 8.71e-06 gaagaaagag ggagggag ggggaagaga chr18:26086079-26086179 + 12 8.71e-06 ATGAGTCATT GGAGGGAG AAGTGTTACT chrX:64546085-64546185 - 56 8.71e-06 GCCAAGCGAA GGAGGGAG TGAAGCTGGC chr15:40364085-40364185 - 28 1.99e-05 CAAGGGGGTG GGAGGAAG CAGGAAACTG chr17:5758268-5758368 - 85 1.99e-05 AGTAGGGC GGAGGAAG AGTTTGGTTA chr1:166846476-166846576 + 21 1.99e-05 tagaatggca ggaggaag ggagactcta chr3:100751191-100751291 - 65 1.99e-05 CTCAGTGCAT GGAGGAAG CTGAAAATGC chr1:149871529-149871629 + 23 1.99e-05 CATTTGAAGT GGAGGAAG ATTTGGCAAC chrX:11886589-11886689 + 53 1.99e-05 ACACATTCCT GGAGGAAG GCTTACCAGA chr4:128391388-128391488 - 53 1.99e-05 TGGAGGGTGA GGAGGAAG CTGCTGGAAC chr8:16738851-16738951 - 34 1.99e-05 CATAACCAAG GGAGGAAG CTCTCTCTCT chr12:70405328-70405428 - 75 1.99e-05 TTTCTCAAGT GGAGGAAG TGCGATTCAA chr8:28148528-28148628 + 53 1.99e-05 CCAGCCCCAA GGAGGAAG AGCTCAATGC chr4:4971796-4971896 - 70 1.99e-05 AGAGAGTTTA GGAGGAAG TGTTTTGTGA chr3:20822129-20822229 + 17 1.99e-05 CAGTCTCCCA GGAGGAAG GCTGGGAGGA chr15:27836413-27836513 - 56 1.99e-05 AGTTATGTCA GGAGGAAG TCAGAGGTTT chr7:63554429-63554529 - 20 1.99e-05 GTGGGAAGTA GGAGGAAG GAGAAGAGCT chr3:119498190-119498290 - 9 1.99e-05 AGCCATAAAT GGAGGAAG CTTGCCGG chr3:65612242-65612342 + 5 2.86e-05 GCAA GGAGGCAG GCAGAAAGAA chr17:25607994-25608094 - 21 2.86e-05 CTCTGGAGGT GGAGGCAG GAGGATTGGG chr1:143171410-143171510 - 81 2.86e-05 TGTTTCACAC GGAGGCAG CGTTGAAGAC chr5:101365313-101365413 + 44 2.86e-05 GCCAACACTG GGAGGCAG TGCGGGAAAG chr4:86987572-86987672 + 36 2.86e-05 ATCTAATCAC GGAGGCAG CTGTGTTTTG chr5:4993269-4993369 - 35 2.86e-05 CAGAGGCCAG GGAGGCAG AGCCATCAGG chr5:56956817-56956917 + 30 2.86e-05 AACACGGGGA GGAGGCAG ACCACATGGT chr2:72740842-72740942 - 34 2.86e-05 ACTCTGGCGT GGAGGCAG GGAGGGTGTG chr9:86774298-86774398 - 78 2.86e-05 AATGATGGGA GGAGGCAG CTCACTGACA chr13:6374681-6374781 + 76 3.73e-05 GAAAAGCTGA GCAGGGAG CTTTGGATCT chr1:56848869-56848969 + 1 3.73e-05 . GCAGGGAG TAAGTGGAGA chr6:117671657-117671757 + 17 3.73e-05 CTGCCCAAGG GCAGGGAG CAAGCCTTAA chrX:51278141-51278241 - 13 3.73e-05 TCTGCAACTG GCAGGGAG CCTACAAGGG chr12:51402007-51402107 + 36 3.73e-05 AGACTGCCCA GCAGGGAG CAACAGTGAG chr11:71995899-71995999 + 11 4.85e-05 ACTGGCAGAG GCAGGAAG TCCTGTGTGG chr2:71638536-71638636 - 23 4.85e-05 AACGGTGTGG GCAGGAAG CAGACGCTGG chr13:68624721-68624821 - 27 4.85e-05 CAAAAGATGG GCAGGAAG CTACCCACAA chr12:5088163-5088263 - 39 4.85e-05 TCCTTCTCAA GCAGGAAG CTGACAGATT chr2:52938214-52938314 - 63 4.85e-05 GTAAAATTTA GCAGGAAG AAGTATTTCA chr1:163607063-163607163 - 10 4.85e-05 GAGCTGTACT GCAGGAAG CAAAGGCAC chr6:41057563-41057663 - 83 4.85e-05 ACCAGCGAAA GCAGGAAG TGGACTAACT chr5:25025628-25025728 - 87 4.85e-05 GAGGGT GCAGGAAG GGCGGTCAGC chr5:41974560-41974660 + 48 5.72e-05 TACTAAAGAT GGTGGGAG GTTAGCAGTT chr5:57505636-57505736 - 84 5.72e-05 CAGTCTCGA GGTGGGAG GTGAGAAGGG chr11:45460354-45460454 - 31 5.72e-05 TTCCTTAGTA GGTGGGAG AATTGAGAGT chr10:10812981-10813081 - 7 5.72e-05 GGAGGAGGCT GGTGGGAG AAGAGA chr13:82570830-82570930 + 76 5.72e-05 ttacatttct ggtgggag ttcaaagtag chr4:120242610-120242710 - 64 5.72e-05 CGCCATCCCT GGTGGGAG GGGTTTGGGA chr8:15496164-15496264 - 59 5.72e-05 AACTAGGCAA GGTGGGAG TTATGAGCAC chr17:70700429-70700529 + 52 5.72e-05 ggatgggtat ggtgggag gggcgggtat chr2:135281822-135281922 - 31 5.72e-05 GGGCTATTCT GGTGGGAG TGTGGAAGAC chr13:101632719-10163281 + 44 6.84e-05 GCCTTCATGG GGTGGAAG AACCAACTGG chr14:8615556-8615656 + 51 6.84e-05 AGCCTGACAG GGTGGAAG CCACACCCTG chr6:128199843-128199943 - 74 9.26e-05 CTGGGGCATG GGCGGGAG CTAACGTCCA chr6:21767635-21767735 + 56 1.70e-04 TCTTTTAAAA GGAGGCGG GCTCTCTTGT chr10:66770299-66770399 - 57 1.84e-04 TCTCCGTCCT GTAGGAAG CTTTCGCGGT chr14:108704929-10870502 - 24 1.84e-04 TGATTTGTCT GTAGGAAG AGGCTATCAA chr1:159696659-159696759 - 32 1.98e-04 GGAGGCTGCA GCCGGGAG AAGGCACTGC chr11:117414782-11741488 + 80 3.85e-04 CTGAGGCTGC GGCGGCGG CAGCTACTGC chr15:55265327-55265427 + 69 4.79e-04 ATCATTCGTC GGGGGCGG ACTAGTCTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGRAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:39855615-39855715 8.7e-06 59_[-5]_33 chr8:15942450-15942550 8.7e-06 18_[-5]_74 chr6:111452506-111452606 8.7e-06 8_[+5]_84 chr10:90606625-90606725 8.7e-06 65_[-5]_27 chr1:42229727-42229827 8.7e-06 71_[+5]_21 chr3:109854069-109854169 8.7e-06 11_[-5]_81 chr5:128323242-128323342 8.7e-06 82_[-5]_10 chr3:125466881-125466981 8.7e-06 51_[+5]_41 chr18:26086079-26086179 8.7e-06 11_[+5]_81 chrX:64546085-64546185 8.7e-06 55_[-5]_37 chr15:40364085-40364185 2e-05 27_[-5]_65 chr17:5758268-5758368 2e-05 84_[-5]_8 chr1:166846476-166846576 2e-05 20_[+5]_72 chr3:100751191-100751291 2e-05 64_[-5]_28 chr1:149871529-149871629 2e-05 22_[+5]_70 chrX:11886589-11886689 2e-05 52_[+5]_40 chr4:128391388-128391488 2e-05 52_[-5]_40 chr8:16738851-16738951 2e-05 33_[-5]_59 chr12:70405328-70405428 2e-05 74_[-5]_18 chr8:28148528-28148628 2e-05 52_[+5]_40 chr4:4971796-4971896 2e-05 69_[-5]_23 chr3:20822129-20822229 2e-05 16_[+5]_76 chr15:27836413-27836513 2e-05 55_[-5]_37 chr7:63554429-63554529 2e-05 19_[-5]_73 chr3:119498190-119498290 2e-05 8_[-5]_84 chr3:65612242-65612342 2.9e-05 4_[+5]_88 chr17:25607994-25608094 2.9e-05 20_[-5]_72 chr1:143171410-143171510 2.9e-05 80_[-5]_12 chr5:101365313-101365413 2.9e-05 43_[+5]_49 chr4:86987572-86987672 2.9e-05 35_[+5]_57 chr5:4993269-4993369 2.9e-05 34_[-5]_58 chr5:56956817-56956917 2.9e-05 29_[+5]_63 chr2:72740842-72740942 2.9e-05 33_[-5]_59 chr9:86774298-86774398 2.9e-05 77_[-5]_15 chr13:6374681-6374781 3.7e-05 75_[+5]_17 chr1:56848869-56848969 3.7e-05 [+5]_92 chr6:117671657-117671757 3.7e-05 16_[+5]_76 chrX:51278141-51278241 3.7e-05 12_[-5]_80 chr12:51402007-51402107 3.7e-05 35_[+5]_57 chr11:71995899-71995999 4.8e-05 10_[+5]_82 chr2:71638536-71638636 4.8e-05 22_[-5]_70 chr13:68624721-68624821 4.8e-05 26_[-5]_66 chr12:5088163-5088263 4.8e-05 38_[-5]_54 chr2:52938214-52938314 4.8e-05 62_[-5]_30 chr1:163607063-163607163 4.8e-05 9_[-5]_83 chr6:41057563-41057663 4.8e-05 82_[-5]_10 chr5:25025628-25025728 4.8e-05 86_[-5]_6 chr5:41974560-41974660 5.7e-05 47_[+5]_45 chr5:57505636-57505736 5.7e-05 83_[-5]_9 chr11:45460354-45460454 5.7e-05 30_[-5]_62 chr10:10812981-10813081 5.7e-05 6_[-5]_86 chr13:82570830-82570930 5.7e-05 75_[+5]_17 chr4:120242610-120242710 5.7e-05 63_[-5]_29 chr8:15496164-15496264 5.7e-05 58_[-5]_34 chr17:70700429-70700529 5.7e-05 51_[+5]_41 chr2:135281822-135281922 5.7e-05 30_[-5]_62 chr13:101632719-10163281 6.8e-05 43_[+5]_49 chr14:8615556-8615656 6.8e-05 50_[+5]_42 chr6:128199843-128199943 9.3e-05 73_[-5]_19 chr6:21767635-21767735 0.00017 55_[+5]_37 chr10:66770299-66770399 0.00018 56_[-5]_36 chr14:108704929-10870502 0.00018 23_[-5]_69 chr1:159696659-159696759 0.0002 31_[-5]_61 chr11:117414782-11741488 0.00039 79_[+5]_13 chr15:55265327-55265427 0.00048 68_[+5]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGRAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGRAG width=8 seqs=65 chr18:39855615-39855715 ( 60) GGAGGGAG 1 chr8:15942450-15942550 ( 19) GGAGGGAG 1 chr6:111452506-111452606 ( 9) GGAGGGAG 1 chr10:90606625-90606725 ( 66) GGAGGGAG 1 chr1:42229727-42229827 ( 72) GGAGGGAG 1 chr3:109854069-109854169 ( 12) GGAGGGAG 1 chr5:128323242-128323342 ( 83) GGAGGGAG 1 chr3:125466881-125466981 ( 52) GGAGGGAG 1 chr18:26086079-26086179 ( 12) GGAGGGAG 1 chrX:64546085-64546185 ( 56) GGAGGGAG 1 chr15:40364085-40364185 ( 28) GGAGGAAG 1 chr17:5758268-5758368 ( 85) GGAGGAAG 1 chr1:166846476-166846576 ( 21) GGAGGAAG 1 chr3:100751191-100751291 ( 65) GGAGGAAG 1 chr1:149871529-149871629 ( 23) GGAGGAAG 1 chrX:11886589-11886689 ( 53) GGAGGAAG 1 chr4:128391388-128391488 ( 53) GGAGGAAG 1 chr8:16738851-16738951 ( 34) GGAGGAAG 1 chr12:70405328-70405428 ( 75) GGAGGAAG 1 chr8:28148528-28148628 ( 53) GGAGGAAG 1 chr4:4971796-4971896 ( 70) GGAGGAAG 1 chr3:20822129-20822229 ( 17) GGAGGAAG 1 chr15:27836413-27836513 ( 56) GGAGGAAG 1 chr7:63554429-63554529 ( 20) GGAGGAAG 1 chr3:119498190-119498290 ( 9) GGAGGAAG 1 chr3:65612242-65612342 ( 5) GGAGGCAG 1 chr17:25607994-25608094 ( 21) GGAGGCAG 1 chr1:143171410-143171510 ( 81) GGAGGCAG 1 chr5:101365313-101365413 ( 44) GGAGGCAG 1 chr4:86987572-86987672 ( 36) GGAGGCAG 1 chr5:4993269-4993369 ( 35) GGAGGCAG 1 chr5:56956817-56956917 ( 30) GGAGGCAG 1 chr2:72740842-72740942 ( 34) GGAGGCAG 1 chr9:86774298-86774398 ( 78) GGAGGCAG 1 chr13:6374681-6374781 ( 76) GCAGGGAG 1 chr1:56848869-56848969 ( 1) GCAGGGAG 1 chr6:117671657-117671757 ( 17) GCAGGGAG 1 chrX:51278141-51278241 ( 13) GCAGGGAG 1 chr12:51402007-51402107 ( 36) GCAGGGAG 1 chr11:71995899-71995999 ( 11) GCAGGAAG 1 chr2:71638536-71638636 ( 23) GCAGGAAG 1 chr13:68624721-68624821 ( 27) GCAGGAAG 1 chr12:5088163-5088263 ( 39) GCAGGAAG 1 chr2:52938214-52938314 ( 63) GCAGGAAG 1 chr1:163607063-163607163 ( 10) GCAGGAAG 1 chr6:41057563-41057663 ( 83) GCAGGAAG 1 chr5:25025628-25025728 ( 87) GCAGGAAG 1 chr5:41974560-41974660 ( 48) GGTGGGAG 1 chr5:57505636-57505736 ( 84) GGTGGGAG 1 chr11:45460354-45460454 ( 31) GGTGGGAG 1 chr10:10812981-10813081 ( 7) GGTGGGAG 1 chr13:82570830-82570930 ( 76) GGTGGGAG 1 chr4:120242610-120242710 ( 64) GGTGGGAG 1 chr8:15496164-15496264 ( 59) GGTGGGAG 1 chr17:70700429-70700529 ( 52) GGTGGGAG 1 chr2:135281822-135281922 ( 31) GGTGGGAG 1 chr13:101632719-10163281 ( 44) GGTGGAAG 1 chr14:8615556-8615656 ( 51) GGTGGAAG 1 chr6:128199843-128199943 ( 74) GGCGGGAG 1 chr6:21767635-21767735 ( 56) GGAGGCGG 1 chr10:66770299-66770399 ( 57) GTAGGAAG 1 chr14:108704929-10870502 ( 24) GTAGGAAG 1 chr1:159696659-159696759 ( 32) GCCGGGAG 1 chr11:117414782-11741488 ( 80) GGCGGCGG 1 chr15:55265327-55265427 ( 69) GGGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGRAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.4965 E= 3.0e+002 -1267 -1267 219 -1267 -1267 -3 178 -319 145 -225 -383 -73 -1267 -1267 219 -1267 -1267 -1267 219 -1267 56 -25 87 -1267 176 -1267 -225 -1267 -1267 -1267 219 -1267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGRAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 3.0e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.215385 0.753846 0.030769 0.769231 0.046154 0.015385 0.169231 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.415385 0.184615 0.400000 0.000000 0.953846 0.000000 0.046154 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGRAG MEME-5 regular expression -------------------------------------------------------------------------------- G[GC]AGG[AG]AG -------------------------------------------------------------------------------- Time 2328.07 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACAGGTTTCTCC MEME-6 width = 15 sites = 2 llr = 42 E-value = 1.2e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACAGGTTTCTCC MEME-6 Description -------------------------------------------------------------------------------- Simplified A :a:a:a::::::::: pos.-specific C a:a:a::::::a:aa probability G ::::::aa::::::: matrix T ::::::::aaa:a:: bits 2.2 * * * ** * ** 2.0 * * * ** * ** 1.8 *************** 1.5 *************** Relative 1.3 *************** Entropy 1.1 *************** (30.3 bits) 0.9 *************** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CACACAGGTTTCTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGGTTTCTCC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr5:27673685-27673785 + 36 7.32e-10 TCTCAGGACC CACACAGGTTTCTCC TCCAAGCATC chr9:25571199-25571299 + 74 7.32e-10 AGCAAATATG CACACAGGTTTCTCC AGTTCTGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGGTTTCTCC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:27673685-27673785 7.3e-10 35_[+6]_50 chr9:25571199-25571299 7.3e-10 73_[+6]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGGTTTCTCC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACAGGTTTCTCC width=15 seqs=2 chr5:27673685-27673785 ( 36) CACACAGGTTTCTCC 1 chr9:25571199-25571299 ( 74) CACACAGGTTTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGGTTTCTCC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 14.655 E= 1.2e+007 -765 218 -765 -765 183 -765 -765 -765 -765 218 -765 -765 183 -765 -765 -765 -765 218 -765 -765 183 -765 -765 -765 -765 -765 218 -765 -765 -765 218 -765 -765 -765 -765 183 -765 -765 -765 183 -765 -765 -765 183 -765 218 -765 -765 -765 -765 -765 183 -765 218 -765 -765 -765 218 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGGTTTCTCC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 2 E= 1.2e+007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAGGTTTCTCC MEME-6 regular expression -------------------------------------------------------------------------------- CACACAGGTTTCTCC -------------------------------------------------------------------------------- Time 2738.27 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAGSRCARDRWGC MEME-7 width = 15 sites = 35 llr = 371 E-value = 3.1e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAGSRCARDRWGC MEME-7 Description -------------------------------------------------------------------------------- Simplified A 16:9::4175444:: pos.-specific C 929113172112118 probability G 1:::9552:434:92 matrix T :1:::2::::3:5:: bits 2.2 2.0 * 1.8 * * * 1.5 * *** ** Relative 1.3 * *** ** Entropy 1.1 * *** ** (15.3 bits) 0.9 * *** ** ** 0.7 ********** ** 0.4 ********** **** 0.2 *************** 0.0 --------------- Multilevel CACAGGGCAAAGTGC consensus C CAGCGGAA sequence T TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGSRCARDRWGC MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr10:16680940-16681040 + 23 2.18e-08 TTCACATAAG CACAGCGCAAGAAGC TATTGTTAGC chr16:54251889-54251989 - 60 8.31e-08 AACAGCCTTC CACAGTGCAAAGAGC ACTAGAAAGG chr5:57505636-57505736 + 60 1.18e-07 CCATCAAGCA CACAGCACAGTGAGC CCTTCTCACC chr17:66412217-66412317 + 82 2.35e-07 TGGGGTGCAT CCCAGCACAAGATGC ACAG chr13:42916031-42916131 - 39 2.75e-07 ACTCTGGAAA CTCAGGGCAGGATGC CACAGCCACC chr13:107831988-10783208 - 53 3.22e-07 AAAGGGAACA CACAGTACAAAATGC AGAGCTCGAG chr16:72914172-72914272 + 6 4.29e-07 gtgtt cacagggaaatgagc tgaaatgcct chr16:9452861-9452961 - 21 4.91e-07 CCAATATTAC CACAGCGGAGGCTGC AAGCATTCAT chr12:95770117-95770217 - 12 5.65e-07 GGAAGATAGG CACAGGGCACTATGC CCAGATTTTT chr4:80950254-80950354 - 13 1.67e-06 AGTAGCTTTA CACAGTGGCAGGAGC CCGTGCTTTT chr13:14459089-14459189 - 7 2.07e-06 GACAGTAATG CTCAGGGCAATGTGG AAGATG chr15:55265327-55265427 - 27 2.30e-06 CTAAGATGTG CTCAGGACAAGCCGC TTCTCTGTAA chr17:48650646-48650746 + 3 2.56e-06 ct cccagtgcacagagc tcaaacagca chr9:113248718-113248818 + 57 3.44e-06 AAATGCATTT CACAGGCACAAGTGC TGCAGGGGTA chr16:25622589-25622689 - 77 3.80e-06 AAGAATGAG CACAGGAAAGGGAGG TGTTCCAGGG chr14:120560363-12056046 - 32 3.80e-06 GGGGCGACAC CACAGGACCAAGCGG TTACAGATTT chr2:143810903-143811003 + 17 3.80e-06 TTTCAAGTTG CTCAGGAGAGTATGC CTTAAACATG chr5:52254408-52254508 + 20 4.60e-06 GCGCCACACA GACAGCACAAACTGC GCATGCCTTT chr11:53132740-53132840 + 8 5.52e-06 CCAGATG CACAGCCCGAGGTGC TGCCACTCCA chr2:4499854-4499954 - 33 5.52e-06 AAGTGCGTGG CACAGTGCTAAGTGC GTGGCACAGT chr4:27798575-27798675 + 26 7.22e-06 TCTTCAGCTT CACAGTGCAATATCC TCACCACCCT chr2:165204867-165204967 + 80 8.58e-06 CACAGCCACC GCCAGCACAGTGAGC AGGGCC chr4:120242610-120242710 + 12 9.35e-06 AATAGTGGGG CACAGCCGAGCAAGC GGGAGGGCTG chr14:117710300-11771040 - 38 1.02e-05 GAGTTTGAGA CATAGCGCAGACAGC CCAGGCAGTG chrX:166147408-166147508 - 31 1.02e-05 CTAATGGTGA CACACGAGCAAGAGC TAGCAGGATG chr7:143295513-143295613 - 9 1.10e-05 GCGGCAAGCA CTCACGGCCAGAAGC AGAGGTGA chr3:16466367-16466467 + 41 1.40e-05 GCTACTGCAT AACCGGGCAAAATGC ATCTGCAACA chr3:140179420-140179520 + 37 1.52e-05 CAGCATTTTA CAGAGTACAGGATGC GCAGCTGTGT chr4:42584772-42584872 + 42 1.52e-05 CTCCTCCAAA ACCAGCGCCGAATGC TGTGTGAAGC chr12:5088163-5088263 + 79 1.77e-05 ATGCAAATGA CCCAGCCGAGTGAGG CGTTCCA chr18:43238231-43238331 - 30 1.77e-05 CTAACTGGAG CACCGGGAAGACCGC CGTGGAACTT chr16:28793046-28793146 - 46 2.21e-05 ACTACACTAC CACAGCGCAAAACCG GTTGGTGTTC chr9:13510930-13511030 + 50 2.56e-05 AGGAAATTGG CCCAGGACCCGCAGG CAAGCACACA chr18:27724879-27724979 + 6 3.15e-05 CATTA CCCACGAAAATCTGC ATAAGTTCTG chr14:64585696-64585796 + 54 1.45e-04 TCCACCCCCA CCCCGGCGCGCGCGC CCCACGCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGSRCARDRWGC MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:16680940-16681040 2.2e-08 22_[+7]_63 chr16:54251889-54251989 8.3e-08 59_[-7]_26 chr5:57505636-57505736 1.2e-07 59_[+7]_26 chr17:66412217-66412317 2.3e-07 81_[+7]_4 chr13:42916031-42916131 2.7e-07 38_[-7]_47 chr13:107831988-10783208 3.2e-07 52_[-7]_33 chr16:72914172-72914272 4.3e-07 5_[+7]_80 chr16:9452861-9452961 4.9e-07 20_[-7]_65 chr12:95770117-95770217 5.7e-07 11_[-7]_74 chr4:80950254-80950354 1.7e-06 12_[-7]_73 chr13:14459089-14459189 2.1e-06 6_[-7]_79 chr15:55265327-55265427 2.3e-06 26_[-7]_59 chr17:48650646-48650746 2.6e-06 2_[+7]_83 chr9:113248718-113248818 3.4e-06 56_[+7]_29 chr16:25622589-25622689 3.8e-06 76_[-7]_9 chr14:120560363-12056046 3.8e-06 31_[-7]_54 chr2:143810903-143811003 3.8e-06 16_[+7]_69 chr5:52254408-52254508 4.6e-06 19_[+7]_66 chr11:53132740-53132840 5.5e-06 7_[+7]_78 chr2:4499854-4499954 5.5e-06 32_[-7]_53 chr4:27798575-27798675 7.2e-06 25_[+7]_60 chr2:165204867-165204967 8.6e-06 79_[+7]_6 chr4:120242610-120242710 9.3e-06 11_[+7]_74 chr14:117710300-11771040 1e-05 37_[-7]_48 chrX:166147408-166147508 1e-05 30_[-7]_55 chr7:143295513-143295613 1.1e-05 8_[-7]_77 chr3:16466367-16466467 1.4e-05 40_[+7]_45 chr3:140179420-140179520 1.5e-05 36_[+7]_49 chr4:42584772-42584872 1.5e-05 41_[+7]_44 chr12:5088163-5088263 1.8e-05 78_[+7]_7 chr18:43238231-43238331 1.8e-05 29_[-7]_56 chr16:28793046-28793146 2.2e-05 45_[-7]_40 chr9:13510930-13511030 2.6e-05 49_[+7]_36 chr18:27724879-27724979 3.1e-05 5_[+7]_80 chr14:64585696-64585796 0.00015 53_[+7]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGSRCARDRWGC MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAGSRCARDRWGC width=15 seqs=35 chr10:16680940-16681040 ( 23) CACAGCGCAAGAAGC 1 chr16:54251889-54251989 ( 60) CACAGTGCAAAGAGC 1 chr5:57505636-57505736 ( 60) CACAGCACAGTGAGC 1 chr17:66412217-66412317 ( 82) CCCAGCACAAGATGC 1 chr13:42916031-42916131 ( 39) CTCAGGGCAGGATGC 1 chr13:107831988-10783208 ( 53) CACAGTACAAAATGC 1 chr16:72914172-72914272 ( 6) CACAGGGAAATGAGC 1 chr16:9452861-9452961 ( 21) CACAGCGGAGGCTGC 1 chr12:95770117-95770217 ( 12) CACAGGGCACTATGC 1 chr4:80950254-80950354 ( 13) CACAGTGGCAGGAGC 1 chr13:14459089-14459189 ( 7) CTCAGGGCAATGTGG 1 chr15:55265327-55265427 ( 27) CTCAGGACAAGCCGC 1 chr17:48650646-48650746 ( 3) CCCAGTGCACAGAGC 1 chr9:113248718-113248818 ( 57) CACAGGCACAAGTGC 1 chr16:25622589-25622689 ( 77) CACAGGAAAGGGAGG 1 chr14:120560363-12056046 ( 32) CACAGGACCAAGCGG 1 chr2:143810903-143811003 ( 17) CTCAGGAGAGTATGC 1 chr5:52254408-52254508 ( 20) GACAGCACAAACTGC 1 chr11:53132740-53132840 ( 8) CACAGCCCGAGGTGC 1 chr2:4499854-4499954 ( 33) CACAGTGCTAAGTGC 1 chr4:27798575-27798675 ( 26) CACAGTGCAATATCC 1 chr2:165204867-165204967 ( 80) GCCAGCACAGTGAGC 1 chr4:120242610-120242710 ( 12) CACAGCCGAGCAAGC 1 chr14:117710300-11771040 ( 38) CATAGCGCAGACAGC 1 chrX:166147408-166147508 ( 31) CACACGAGCAAGAGC 1 chr7:143295513-143295613 ( 9) CTCACGGCCAGAAGC 1 chr3:16466367-16466467 ( 41) AACCGGGCAAAATGC 1 chr3:140179420-140179520 ( 37) CAGAGTACAGGATGC 1 chr4:42584772-42584872 ( 42) ACCAGCGCCGAATGC 1 chr12:5088163-5088263 ( 79) CCCAGCCGAGTGAGG 1 chr18:43238231-43238331 ( 30) CACCGGGAAGACCGC 1 chr16:28793046-28793146 ( 46) CACAGCGCAAAACCG 1 chr9:13510930-13511030 ( 50) CCCAGGACCCGCAGG 1 chr18:27724879-27724979 ( 6) CCCACGAAAATCTGC 1 chr14:64585696-64585796 ( 54) CCCCGGCGCGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGSRCARDRWGC MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 10.6274 E= 3.1e+007 -230 201 -194 -1177 116 6 -1177 -97 -1177 210 -294 -329 170 -135 -1177 -1177 -1177 -135 206 -1177 -1177 65 106 -49 40 -62 115 -1177 -97 158 -13 -1177 135 6 -294 -329 95 -135 76 -1177 40 -194 52 -13 40 -13 97 -1177 51 -62 -1177 70 -1177 -194 210 -1177 -1177 192 -35 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGSRCARDRWGC MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 35 E= 3.1e+007 0.057143 0.885714 0.057143 0.000000 0.628571 0.228571 0.000000 0.142857 0.000000 0.942857 0.028571 0.028571 0.914286 0.085714 0.000000 0.000000 0.000000 0.085714 0.914286 0.000000 0.000000 0.342857 0.457143 0.200000 0.371429 0.142857 0.485714 0.000000 0.142857 0.657143 0.200000 0.000000 0.714286 0.228571 0.028571 0.028571 0.542857 0.085714 0.371429 0.000000 0.371429 0.057143 0.314286 0.257143 0.371429 0.200000 0.428571 0.000000 0.400000 0.142857 0.000000 0.457143 0.000000 0.057143 0.942857 0.000000 0.000000 0.828571 0.171429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGSRCARDRWGC MEME-7 regular expression -------------------------------------------------------------------------------- C[AC]CAG[GCT][GA][CG][AC][AG][AGT][GAC][TA]GC -------------------------------------------------------------------------------- Time 3145.77 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCHCAGCAGCYKBC MEME-8 width = 15 sites = 55 llr = 558 E-value = 5.6e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCHCAGCAGCYKBC MEME-8 Description -------------------------------------------------------------------------------- Simplified A :::2:a:271:2::1 pos.-specific C 42849:181183147 probability G 12211:9::71:631 matrix T 46:3::::211543: bits 2.2 2.0 * 1.8 *** 1.5 *** Relative 1.3 * **** * Entropy 1.1 * **** * (14.6 bits) 0.9 * **** ** * * 0.7 *** ******* * * 0.4 *** *********** 0.2 *** *********** 0.0 --------------- Multilevel TTCCCAGCAGCTGCC consensus CG T T CTT sequence C A A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCHCAGCAGCYKBC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr11:17086022-17086122 + 2 3.19e-08 T CTCACAGCAGCTTCC ACATCTCAGT chr5:41974560-41974660 + 70 3.05e-07 GCAGTTCTCT CTCCCAGCTGCCTGC AGTGTCTCCT chr6:136467219-136467319 + 45 3.05e-07 GACAAGAAAC TGCTCAGCAGCTTTC TGACAGCTTC chr11:21159468-21159568 - 74 4.13e-07 CCCTGTAAAC TTCCCACCAGCTGCC AAGCTAGTTA chr2:116236666-116236766 + 80 4.13e-07 CAAATTTATC TTCCCACCAGCTGCC AGCTCT chr1:89193511-89193611 - 50 4.74e-07 CCTTTCCTCA TCGTCAGCAGCTGCC CCTCCTCCAG chr1:12623119-12623219 - 69 5.53e-07 CTGGTGACTT CTCACAGCAGCTGGA AACCTGGAGC chr5:101878310-101878410 - 67 7.27e-07 ACGTTGGCTC TTGCCAGCTGCTGTC TGTCAGGTGG chr11:117414782-11741488 - 62 7.27e-07 CGCCGCCGCA GCCTCAGCAGCCGTC CTCTCCCCGC chr8:86201762-86201862 + 49 8.30e-07 TGAAACCCTG CCCCCAGAAGCAGCC TGTGGACGTT chr10:10812981-10813081 + 42 8.30e-07 CTGCCATGGT TTCCCAGCAGGCTTC TGTAATCCCT chr3:123722538-123722638 - 32 8.30e-07 GACTGCATCC TCCACAGAAGCTGCC AGAGTTGTGG chr10:14040547-14040647 - 56 1.08e-06 ATCTCGTGGG TTCACAGCAGCCTCG GTTCTGAACC chr4:127400148-127400248 + 75 1.58e-06 ACTGTGAAGA GTCACAGCAGCTGTG GGCTGCAGGC chr9:46632553-46632653 + 32 1.58e-06 gtagcaggtg cttccagcagcttcc cgaatgggag chr7:144316731-144316831 + 49 1.58e-06 TGAGTTGTGA CTCTCAGCAACCGTC TCCTAGCAAC chr18:64791117-64791217 + 50 1.79e-06 AGCTGCAGGG TGGCCAGCACCTGCC CTGCTCTGCA chr13:42963878-42963978 - 64 2.27e-06 CAGATCATTT TCCCCAGAAGCCTTC TCTTGGTCAT chr1:149871529-149871629 + 61 2.55e-06 AGAACTAGTT CTCTCAGCTGGCGTC CCTGGCACAG chr17:5758268-5758368 - 20 4.01e-06 CTCAACGGCA GCCCCAGCCCCTGCC TTTCACCAGC chr7:110164679-110164779 + 62 4.01e-06 GTGGTGCCAG TGCGCAGCCGCAGTC CCGTAGCGGG chr4:56644191-56644291 + 83 4.47e-06 TCATTGCTGT CTCTGAGCCGCTTCC CCC chr17:85242024-85242124 + 32 4.47e-06 CATCCTGGAG TGCTCAGCTCCTGTC AGGAAAGAGG chr2:18534581-18534681 + 73 4.98e-06 CATCCCTTGG CTCTCAGAACCCTCC CAGAGAAGCC chr8:40545635-40545735 - 24 4.98e-06 AGACTCTCAG TGCACAGCAGCTGCT GTGGTTGATG chr13:95912080-95912180 + 3 5.54e-06 AA GTCACAGCACCCTGC AAGCTGCAGT chr4:12376769-12376869 - 37 6.82e-06 ACTGCCTTCT CTGGCAGCAGCTTTG GAACAAACCC chr12:86651377-86651477 + 9 6.82e-06 TGGATCTG CTGCCAGCATCAGCC TGGCTCAGTG chr4:85763998-85764098 - 7 6.82e-06 CACGTGTTAT CTCGCAGCAGCCCCA TGAGGC chr3:85340457-85340557 + 55 7.53e-06 gtagagttct gtcacagcagcctga gaaaactaat chr13:42916031-42916131 - 81 8.34e-06 CGCAG CTCCCAGCCGGCGGG GTTTTGTGGC chr10:66920371-66920471 - 41 9.20e-06 ATCAATCAGT TTCGCAGCTGGAGGC TGAGGCTTTC chr3:101775043-101775143 - 15 9.20e-06 GTGTGGTGCA GGCTCAGCAGCAGTG CAGCTAAAAA chr2:77788938-77789038 - 61 9.20e-06 CAGTGACGGA GTGCCAGCAACTGTC AAGAGTTGTT chr11:45460354-45460454 + 6 1.01e-05 GCAGC TCCCCAGCATCTGCA ACTCTCAATT chr9:60259536-60259636 + 77 1.01e-05 TCTGGAGTTG GTCCCAGAAGCAGCA GTGGCTACC chr5:85615998-85616098 + 52 1.01e-05 GAAACACAGA CCCACAGATGCTTGC AAAGAAAACT chr10:18496998-18497098 - 47 1.23e-05 GCGGGGAGGA CTCGCAGCATCTGGG GTAGTGGGTG chr18:65222466-65222566 - 4 1.23e-05 GCCATCAGAA CTCGCAGATGCTCCC CAT chr5:52254408-52254508 - 80 1.23e-05 TGTCTC TGCGGAGCAGCCTTC TCCCTTCTCT chr3:87676155-87676255 - 79 1.23e-05 GCCAGTG TCCTCAGCTCCAGGC CAGCCATGCA chr18:65101545-65101645 - 35 1.35e-05 CTGCAGCTGT TTCTCAGCTGTCTCC GCCAAGTGTA chr11:86930764-86930864 - 76 1.35e-05 ATCCTTTGCT TCCCCAGCAGTTGGG AGAAGGCTTC chr2:135281822-135281922 + 60 1.77e-05 ctaaactctg ctgacagcagtctcc actctacatt chr2:53882713-53882813 + 64 2.11e-05 AGAAACAGAC CTGAGAGCTGCTTCC TTCCCCAGCC chr11:32708440-32708540 - 74 2.30e-05 AGGAAAAAAA TGCTCACCAGCATGC TTAGTGAAAA chrX:99172201-99172301 + 40 3.22e-05 CAGCTAAGCC TCCCCAGCCAGTGTC TATACTCCCT chr13:97007313-97007413 + 47 4.42e-05 gatcaggttc cgcccagttcctggc tctgcctttc chr8:11114437-11114537 - 59 4.77e-05 TTAACGTTTG TTCTCAGCCGGTGTT CTCCCCCACA chr4:97751630-97751730 - 7 5.14e-05 GGTCACTCAG CGCTCAGCCACTGTA GGACTG chr5:57505636-57505736 + 41 5.54e-05 ACAGGAATCC TTCCGAGCACCATCA AGCACACAGC chr12:46399047-46399147 + 83 7.40e-05 TGGGCTACTG CGGTCAGAAGCACGC ACA chr1:31101277-31101377 - 16 9.11e-05 TTCATCCTAA TTTACAGAAGGTTCC GTGGAGGAGT chr8:92335734-92335834 - 36 1.19e-04 AAGGCAGCCT CTCCCAGACGGTCGG TTTGCAGCTT chr4:118083566-118083666 - 50 1.26e-04 ACTGGAGCAT CGCGGAGTAGCAGTC GGCCTGGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCHCAGCAGCYKBC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:17086022-17086122 3.2e-08 1_[+8]_84 chr5:41974560-41974660 3e-07 69_[+8]_16 chr6:136467219-136467319 3e-07 44_[+8]_41 chr11:21159468-21159568 4.1e-07 73_[-8]_12 chr2:116236666-116236766 4.1e-07 79_[+8]_6 chr1:89193511-89193611 4.7e-07 49_[-8]_36 chr1:12623119-12623219 5.5e-07 68_[-8]_17 chr5:101878310-101878410 7.3e-07 66_[-8]_19 chr11:117414782-11741488 7.3e-07 61_[-8]_24 chr8:86201762-86201862 8.3e-07 48_[+8]_37 chr10:10812981-10813081 8.3e-07 41_[+8]_44 chr3:123722538-123722638 8.3e-07 31_[-8]_54 chr10:14040547-14040647 1.1e-06 55_[-8]_30 chr4:127400148-127400248 1.6e-06 74_[+8]_11 chr9:46632553-46632653 1.6e-06 31_[+8]_54 chr7:144316731-144316831 1.6e-06 48_[+8]_37 chr18:64791117-64791217 1.8e-06 49_[+8]_36 chr13:42963878-42963978 2.3e-06 63_[-8]_22 chr1:149871529-149871629 2.5e-06 60_[+8]_25 chr17:5758268-5758368 4e-06 19_[-8]_66 chr7:110164679-110164779 4e-06 61_[+8]_24 chr4:56644191-56644291 4.5e-06 82_[+8]_3 chr17:85242024-85242124 4.5e-06 31_[+8]_54 chr2:18534581-18534681 5e-06 72_[+8]_13 chr8:40545635-40545735 5e-06 23_[-8]_62 chr13:95912080-95912180 5.5e-06 2_[+8]_83 chr4:12376769-12376869 6.8e-06 36_[-8]_49 chr12:86651377-86651477 6.8e-06 8_[+8]_77 chr4:85763998-85764098 6.8e-06 6_[-8]_79 chr3:85340457-85340557 7.5e-06 54_[+8]_31 chr13:42916031-42916131 8.3e-06 80_[-8]_5 chr10:66920371-66920471 9.2e-06 40_[-8]_45 chr3:101775043-101775143 9.2e-06 14_[-8]_71 chr2:77788938-77789038 9.2e-06 60_[-8]_25 chr11:45460354-45460454 1e-05 5_[+8]_80 chr9:60259536-60259636 1e-05 76_[+8]_9 chr5:85615998-85616098 1e-05 51_[+8]_34 chr10:18496998-18497098 1.2e-05 46_[-8]_39 chr18:65222466-65222566 1.2e-05 3_[-8]_82 chr5:52254408-52254508 1.2e-05 79_[-8]_6 chr3:87676155-87676255 1.2e-05 78_[-8]_7 chr18:65101545-65101645 1.3e-05 34_[-8]_51 chr11:86930764-86930864 1.3e-05 75_[-8]_10 chr2:135281822-135281922 1.8e-05 59_[+8]_26 chr2:53882713-53882813 2.1e-05 63_[+8]_22 chr11:32708440-32708540 2.3e-05 73_[-8]_12 chrX:99172201-99172301 3.2e-05 39_[+8]_46 chr13:97007313-97007413 4.4e-05 46_[+8]_39 chr8:11114437-11114537 4.8e-05 58_[-8]_27 chr4:97751630-97751730 5.1e-05 6_[-8]_79 chr5:57505636-57505736 5.5e-05 40_[+8]_45 chr12:46399047-46399147 7.4e-05 82_[+8]_3 chr1:31101277-31101377 9.1e-05 15_[-8]_70 chr8:92335734-92335834 0.00012 35_[-8]_50 chr4:118083566-118083666 0.00013 49_[-8]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCHCAGCAGCYKBC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCHCAGCAGCYKBC width=15 seqs=55 chr11:17086022-17086122 ( 2) CTCACAGCAGCTTCC 1 chr5:41974560-41974660 ( 70) CTCCCAGCTGCCTGC 1 chr6:136467219-136467319 ( 45) TGCTCAGCAGCTTTC 1 chr11:21159468-21159568 ( 74) TTCCCACCAGCTGCC 1 chr2:116236666-116236766 ( 80) TTCCCACCAGCTGCC 1 chr1:89193511-89193611 ( 50) TCGTCAGCAGCTGCC 1 chr1:12623119-12623219 ( 69) CTCACAGCAGCTGGA 1 chr5:101878310-101878410 ( 67) TTGCCAGCTGCTGTC 1 chr11:117414782-11741488 ( 62) GCCTCAGCAGCCGTC 1 chr8:86201762-86201862 ( 49) CCCCCAGAAGCAGCC 1 chr10:10812981-10813081 ( 42) TTCCCAGCAGGCTTC 1 chr3:123722538-123722638 ( 32) TCCACAGAAGCTGCC 1 chr10:14040547-14040647 ( 56) TTCACAGCAGCCTCG 1 chr4:127400148-127400248 ( 75) GTCACAGCAGCTGTG 1 chr9:46632553-46632653 ( 32) CTTCCAGCAGCTTCC 1 chr7:144316731-144316831 ( 49) CTCTCAGCAACCGTC 1 chr18:64791117-64791217 ( 50) TGGCCAGCACCTGCC 1 chr13:42963878-42963978 ( 64) TCCCCAGAAGCCTTC 1 chr1:149871529-149871629 ( 61) CTCTCAGCTGGCGTC 1 chr17:5758268-5758368 ( 20) GCCCCAGCCCCTGCC 1 chr7:110164679-110164779 ( 62) TGCGCAGCCGCAGTC 1 chr4:56644191-56644291 ( 83) CTCTGAGCCGCTTCC 1 chr17:85242024-85242124 ( 32) TGCTCAGCTCCTGTC 1 chr2:18534581-18534681 ( 73) CTCTCAGAACCCTCC 1 chr8:40545635-40545735 ( 24) TGCACAGCAGCTGCT 1 chr13:95912080-95912180 ( 3) GTCACAGCACCCTGC 1 chr4:12376769-12376869 ( 37) CTGGCAGCAGCTTTG 1 chr12:86651377-86651477 ( 9) CTGCCAGCATCAGCC 1 chr4:85763998-85764098 ( 7) CTCGCAGCAGCCCCA 1 chr3:85340457-85340557 ( 55) GTCACAGCAGCCTGA 1 chr13:42916031-42916131 ( 81) CTCCCAGCCGGCGGG 1 chr10:66920371-66920471 ( 41) TTCGCAGCTGGAGGC 1 chr3:101775043-101775143 ( 15) GGCTCAGCAGCAGTG 1 chr2:77788938-77789038 ( 61) GTGCCAGCAACTGTC 1 chr11:45460354-45460454 ( 6) TCCCCAGCATCTGCA 1 chr9:60259536-60259636 ( 77) GTCCCAGAAGCAGCA 1 chr5:85615998-85616098 ( 52) CCCACAGATGCTTGC 1 chr10:18496998-18497098 ( 47) CTCGCAGCATCTGGG 1 chr18:65222466-65222566 ( 4) CTCGCAGATGCTCCC 1 chr5:52254408-52254508 ( 80) TGCGGAGCAGCCTTC 1 chr3:87676155-87676255 ( 79) TCCTCAGCTCCAGGC 1 chr18:65101545-65101645 ( 35) TTCTCAGCTGTCTCC 1 chr11:86930764-86930864 ( 76) TCCCCAGCAGTTGGG 1 chr2:135281822-135281922 ( 60) CTGACAGCAGTCTCC 1 chr2:53882713-53882813 ( 64) CTGAGAGCTGCTTCC 1 chr11:32708440-32708540 ( 74) TGCTCACCAGCATGC 1 chrX:99172201-99172301 ( 40) TCCCCAGCCAGTGTC 1 chr13:97007313-97007413 ( 47) CGCCCAGTTCCTGGC 1 chr8:11114437-11114537 ( 59) TTCTCAGCCGGTGTT 1 chr4:97751630-97751730 ( 7) CGCTCAGCCACTGTA 1 chr5:57505636-57505736 ( 41) TTCCGAGCACCATCA 1 chr12:46399047-46399147 ( 83) CGGTCAGAAGCACGC 1 chr1:31101277-31101377 ( 16) TTTACAGAAGGTTCC 1 chr8:92335734-92335834 ( 36) CTCCCAGACGGTCGG 1 chr4:118083566-118083666 ( 50) CGCGGAGTAGCAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCHCAGCAGCYKBC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.0815 E= 5.6e-004 -1243 93 -59 64 -1243 -13 -1 105 -1243 187 -42 -295 -36 73 -59 -4 -1243 205 -127 -1243 183 -1243 -1243 -1243 -1243 -201 211 -1243 -63 183 -1243 -295 122 -59 -1243 -49 -195 -59 173 -236 -1243 187 -59 -236 -49 32 -1243 91 -1243 -159 136 37 -1243 93 22 22 -114 166 -59 -295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCHCAGCAGCYKBC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 55 E= 5.6e-004 0.000000 0.418182 0.145455 0.436364 0.000000 0.200000 0.218182 0.581818 0.000000 0.800000 0.163636 0.036364 0.218182 0.363636 0.145455 0.272727 0.000000 0.909091 0.090909 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.054545 0.945455 0.000000 0.181818 0.781818 0.000000 0.036364 0.654545 0.145455 0.000000 0.200000 0.072727 0.145455 0.727273 0.054545 0.000000 0.800000 0.145455 0.054545 0.200000 0.272727 0.000000 0.527273 0.000000 0.072727 0.563636 0.363636 0.000000 0.418182 0.254545 0.327273 0.127273 0.690909 0.145455 0.036364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCHCAGCAGCYKBC MEME-8 regular expression -------------------------------------------------------------------------------- [TC][TGC]C[CTA]CAGC[AT]GC[TCA][GT][CTG]C -------------------------------------------------------------------------------- Time 3546.90 secs. ******************************************************************************** ******************************************************************************** MOTIF TKYCTYYYTCYTYYYBYYTBT MEME-9 width = 21 sites = 59 llr = 603 E-value = 7.3e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKYCTYYYTCYTYYYBYYTBT MEME-9 Description -------------------------------------------------------------------------------- Simplified A 2:2:21:2::::1::112::1 pos.-specific C 1247:4532751453345:41 probability G :4::11::2:1111:31::31 matrix T 755374556347546343a37 bits 2.2 2.0 1.8 * 1.5 * Relative 1.3 * Entropy 1.1 * * * * (14.7 bits) 0.9 * * * *** * * 0.7 ** ** * **** ** ** 0.4 *************** **** 0.2 ********************* 0.0 --------------------- Multilevel TTTCTCCTTCCTTCTGTCTCT consensus GCT TTCGTT CTCCCT T sequence A T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYCTYYYTCYTYYYBYYTBT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr14:103626173-10362627 + 5 1.55e-09 TTGC TTTCTCTTTCCTCTCCTCTTT TTTTGTCCCC chr3:125466881-125466981 - 28 2.57e-09 TCCCTCCCTC TTTCTTCTCCCTCTTCCCTCT GTCTCTCACC chr3:139898881-139898981 + 2 2.38e-08 T TTCTTTCTTCTTCCTTTCTTT CTTAAGACTT chr4:37120231-37120331 + 71 2.38e-08 GGCTGTCATT TTTTTTTCTCCTTTTTCCTCT CCAAAAGCA chr17:67259947-67260047 + 75 1.43e-07 TCCTCTTCAG TTTCTCTTTCTGTTCCTCTGT CATAT chr11:21159468-21159568 - 40 2.68e-07 CTAGTTAAGG TTTCTTCAGCCTCCTCTCTTG CCATCCCCTT chr2:167146603-167146703 + 46 2.68e-07 cgtctctctc tccttccctccctctctctct ccAATTTTAG chr1:26256145-26256245 - 9 3.12e-07 GAGAGCCAAT TTTCTCTTGTCTTCTGTCTGC TATGAATA chr2:6667574-6667674 + 71 3.12e-07 TCTAGAGACA AGCCTCTCTCCTTCTGCATGT TCTGCTTCA chr2:116236666-116236766 + 41 8.44e-07 AAACAGCAGG AGCCTCCTGCCTACTCTCTCT TCTGGCTTCA chr12:26227730-26227830 - 38 8.44e-07 CCCTCCCCAC TGTCTCCTTCCTTCCATTTTG AGCATTTTTG chr1:42572143-42572243 - 26 9.65e-07 CTCCCACTGA TCTCTCCAGCCTTGTTTCTTT AATTTCTCTT chr1:21508429-21508529 + 15 1.25e-06 tttctttctt tctttctttcgttctttcttt cgttctttct chr12:13054533-13054633 - 12 1.42e-06 GCATTCTAAT TGTCTCTTTCCTGGTGCCTGG AGCTCTTTCA chr6:35621595-35621695 + 34 1.82e-06 GCCTCACTCC TCTCTTCCTCTTCCCTGCTTC CCATGGCCTG chr2:99170468-99170568 + 51 1.82e-06 GGAATTTATA TTCTTTTCTCCTACTCTTTCT GAGATAGAAC chr15:55176483-55176583 - 77 2.06e-06 GTG TTTCTTCTTCTTTTCCCATTA TATATACAGA chr17:66412217-66412317 - 34 2.06e-06 GACTCATACG CTCCGTCTTCTTCCTTGCTGT CTACCTGATA chr3:156739411-156739511 - 28 2.32e-06 ATCAAATCTT TTTTTTTTTTTTTTCGTTTTT CAAGGCAAGG chr1:8863754-8863854 + 4 2.61e-06 tgc tgcctgctgcctgctgcctgc tgcctgctgc chrX:99172201-99172301 + 60 2.94e-06 GTGTCTATAC TCCCTGCCTCCTGCCGGCTCT GCCTCCCACT chr15:27731597-27731697 - 35 2.94e-06 GTACATAAGA CTCTTCCTGCCTTTTGTCTGG CAATCCCCCA chr13:40673912-40674012 - 44 3.69e-06 CAGAACGCTG TGCCTCCATTTTCTCACTTGT AAAAACGGCT chr8:108790478-108790578 + 11 4.12e-06 GGCCTCTGCA AGCCTGCCTTCTCCTCCTTTT CCCGAGGGGG chr1:30498516-30498616 + 46 4.12e-06 AAAACACAGA TTTCATTTGCCTTTTGCATCC ATCAGACATA chr5:57505636-57505736 - 5 5.12e-06 CCTGTATGCG TTCCAGTAGTCTTCTGCCTCT TGCC chr16:96843676-96843776 - 77 5.12e-06 TTC TTACTCCAGTCTCCTGACTTT TCAACACTGC chr2:51830234-51830334 + 18 6.32e-06 TTCATTTCTT TTCCTCCTTCGTGTTTCCTGA TTGGAGCTCC chr8:60772816-60772916 - 44 7.01e-06 CGCATCTTTC TTACGCTTGTTTCTCTTCTCT TTGGAAACTA chr18:39855615-39855715 + 69 7.77e-06 GCTCCCTCCC TTCCTTCTTTTCCTCTCCTTA GTCTGTGCTT chr4:78012231-78012331 - 53 7.77e-06 TCCCACCACA TGTCAATTTCTTCTTCACTGT GGACATTCTA chr9:86419270-86419370 + 77 7.77e-06 AAAGCCATAG TTACATTTGCTGTTTTCCTCT TTT chrX:51278141-51278241 + 56 7.77e-06 AATGCAGTAA CTCCTTTTTTTTCTTTCATTT CTCCAAGCTT chr10:11049250-11049350 - 74 8.59e-06 TGTCCT TGTCACCATTTGCTCGTCTGT CTCTCCTACT chr13:6460717-6460817 - 33 9.48e-06 CATCTGACTG TGTTTTCATCTCTTTTCCTCA CATGAAGTAC chr16:82539107-82539207 - 68 1.15e-05 TATCATCTTC CCCCTCTTTCCTCTTGAATTT GAGTTGCCGG chr16:94962484-94962584 + 57 1.26e-05 CCCACACAAA TTCTTCTCTCCCCCACTTTGT TAGCTTTTTA chr10:16680940-16681040 + 78 1.39e-05 CTCAAAAGCA TGATGCTTTTTTTCTTGCTCT TC chr13:99069731-99069831 - 67 1.39e-05 GGGCGTGCAG TTTCTCTATCCTTCCGTAGGT ATTCATTTCC chr12:70405328-70405428 - 21 1.52e-05 CTGACTCTGA AGTCTACTCCCTTGCCGCTCT ACTTTGTAGT chr8:49555778-49555878 - 7 1.52e-05 TGAATCACAA ACTTTTTTTTCTTTTTTTTTT AAACTA chr6:94020484-94020584 + 26 1.52e-05 TGGAATAGCA TCCTATCTTCTGCTTCCTTTT GCTGCCATGT chrX:164637454-164637554 + 76 1.67e-05 atgaaccatc tgttttcttgttcctgtctca agat chr1:122346819-122346919 + 65 1.82e-05 GTGTAGGGGT TTACATCTTCCTACTGTTTCC TAGCATCTGC chr4:95915468-95915568 + 31 1.82e-05 ACTCTTGTGA TGATTATCGCCTTCTTCATGT AGTCTCACTT chr2:159868014-159868114 + 57 1.99e-05 TGTGATTTCA CCCCATCTTCCTTGTGGTTCT ATCTCTGTCT chr16:70091888-70091988 - 77 1.99e-05 GCT TGTCAATCGCCTCGCTTTTCT TGAGTGTAGC chr3:65612242-65612342 - 31 2.57e-05 GTCTGTGTAC TTACAGTCCCCTTCTGCCTGA AATATCCTTT chr5:131813233-131813333 - 74 2.57e-05 CCTGTC AGCTTTTCCCCTCGCCCATCT CATTTGGTCT chr4:12376769-12376869 - 70 3.03e-05 ATACCCTCCC ATTTTCCACCTGCCCCCTTTT CTGTCACCAC chr14:120560363-12056046 + 48 3.85e-05 GGTCCTGTGG TGTCGCCCCCGCCCCATCTGT TTTAGCTCCT chr8:14536586-14536686 - 69 4.16e-05 TTCTGCTACT ATCCTACACCCGCCCCCTTTT TATTCTGTTT chr5:25784370-25784470 - 35 5.60e-05 TCAGATGTTT TGTCTCTATTTCTTTACTTGC TTTGTCCATT chr16:21727817-21727917 + 77 6.02e-05 CTTCTTTCTA TTACACTTTTTGTTTCGTTTT CCA chr11:42497445-42497545 - 3 6.46e-05 ACAGCAGGCA ATTTGTTCTCTTTTTATATCT GT chr15:91957185-91957285 + 30 6.93e-05 CAGATTTGAG CTTTTTTTTCCCCCTAGTTCG TGGCTCCCTT chr9:52738672-52738772 + 80 8.49e-05 TTCTAGGATG AGTCGCCCCCTTTCAGCCTCC chr15:48389344-48389444 + 79 1.10e-04 AAGTGAATGC TGTTTTTCGCTCTCCTATTGG A chr3:88214173-88214273 - 5 1.24e-04 ATACCTGGTC TGACGTCACTGTCTCGTTTCT TCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYCTYYYTCYTYYYBYYTBT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:103626173-10362627 1.5e-09 4_[+9]_75 chr3:125466881-125466981 2.6e-09 27_[-9]_52 chr3:139898881-139898981 2.4e-08 1_[+9]_78 chr4:37120231-37120331 2.4e-08 70_[+9]_9 chr17:67259947-67260047 1.4e-07 74_[+9]_5 chr11:21159468-21159568 2.7e-07 39_[-9]_40 chr2:167146603-167146703 2.7e-07 45_[+9]_34 chr1:26256145-26256245 3.1e-07 8_[-9]_71 chr2:6667574-6667674 3.1e-07 70_[+9]_9 chr2:116236666-116236766 8.4e-07 40_[+9]_39 chr12:26227730-26227830 8.4e-07 37_[-9]_42 chr1:42572143-42572243 9.6e-07 25_[-9]_54 chr1:21508429-21508529 1.3e-06 14_[+9]_65 chr12:13054533-13054633 1.4e-06 11_[-9]_68 chr6:35621595-35621695 1.8e-06 33_[+9]_46 chr2:99170468-99170568 1.8e-06 50_[+9]_29 chr15:55176483-55176583 2.1e-06 76_[-9]_3 chr17:66412217-66412317 2.1e-06 33_[-9]_46 chr3:156739411-156739511 2.3e-06 27_[-9]_52 chr1:8863754-8863854 2.6e-06 3_[+9]_76 chrX:99172201-99172301 2.9e-06 59_[+9]_20 chr15:27731597-27731697 2.9e-06 34_[-9]_45 chr13:40673912-40674012 3.7e-06 43_[-9]_36 chr8:108790478-108790578 4.1e-06 10_[+9]_69 chr1:30498516-30498616 4.1e-06 45_[+9]_34 chr5:57505636-57505736 5.1e-06 4_[-9]_75 chr16:96843676-96843776 5.1e-06 76_[-9]_3 chr2:51830234-51830334 6.3e-06 17_[+9]_62 chr8:60772816-60772916 7e-06 43_[-9]_36 chr18:39855615-39855715 7.8e-06 68_[+9]_11 chr4:78012231-78012331 7.8e-06 52_[-9]_27 chr9:86419270-86419370 7.8e-06 76_[+9]_3 chrX:51278141-51278241 7.8e-06 55_[+9]_24 chr10:11049250-11049350 8.6e-06 73_[-9]_6 chr13:6460717-6460817 9.5e-06 32_[-9]_47 chr16:82539107-82539207 1.2e-05 67_[-9]_12 chr16:94962484-94962584 1.3e-05 56_[+9]_23 chr10:16680940-16681040 1.4e-05 77_[+9]_2 chr13:99069731-99069831 1.4e-05 66_[-9]_13 chr12:70405328-70405428 1.5e-05 20_[-9]_59 chr8:49555778-49555878 1.5e-05 6_[-9]_73 chr6:94020484-94020584 1.5e-05 25_[+9]_54 chrX:164637454-164637554 1.7e-05 75_[+9]_4 chr1:122346819-122346919 1.8e-05 64_[+9]_15 chr4:95915468-95915568 1.8e-05 30_[+9]_49 chr2:159868014-159868114 2e-05 56_[+9]_23 chr16:70091888-70091988 2e-05 76_[-9]_3 chr3:65612242-65612342 2.6e-05 30_[-9]_49 chr5:131813233-131813333 2.6e-05 73_[-9]_6 chr4:12376769-12376869 3e-05 69_[-9]_10 chr14:120560363-12056046 3.9e-05 47_[+9]_32 chr8:14536586-14536686 4.2e-05 68_[-9]_11 chr5:25784370-25784470 5.6e-05 34_[-9]_45 chr16:21727817-21727917 6e-05 76_[+9]_3 chr11:42497445-42497545 6.5e-05 2_[-9]_77 chr15:91957185-91957285 6.9e-05 29_[+9]_50 chr9:52738672-52738772 8.5e-05 79_[+9] chr15:48389344-48389444 0.00011 78_[+9]_1 chr3:88214173-88214273 0.00012 4_[-9]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYCTYYYTCYTYYYBYYTBT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKYCTYYYTCYTYYYBYYTBT width=21 seqs=59 chr14:103626173-10362627 ( 5) TTTCTCTTTCCTCTCCTCTTT 1 chr3:125466881-125466981 ( 28) TTTCTTCTCCCTCTTCCCTCT 1 chr3:139898881-139898981 ( 2) TTCTTTCTTCTTCCTTTCTTT 1 chr4:37120231-37120331 ( 71) TTTTTTTCTCCTTTTTCCTCT 1 chr17:67259947-67260047 ( 75) TTTCTCTTTCTGTTCCTCTGT 1 chr11:21159468-21159568 ( 40) TTTCTTCAGCCTCCTCTCTTG 1 chr2:167146603-167146703 ( 46) TCCTTCCCTCCCTCTCTCTCT 1 chr1:26256145-26256245 ( 9) TTTCTCTTGTCTTCTGTCTGC 1 chr2:6667574-6667674 ( 71) AGCCTCTCTCCTTCTGCATGT 1 chr2:116236666-116236766 ( 41) AGCCTCCTGCCTACTCTCTCT 1 chr12:26227730-26227830 ( 38) TGTCTCCTTCCTTCCATTTTG 1 chr1:42572143-42572243 ( 26) TCTCTCCAGCCTTGTTTCTTT 1 chr1:21508429-21508529 ( 15) TCTTTCTTTCGTTCTTTCTTT 1 chr12:13054533-13054633 ( 12) TGTCTCTTTCCTGGTGCCTGG 1 chr6:35621595-35621695 ( 34) TCTCTTCCTCTTCCCTGCTTC 1 chr2:99170468-99170568 ( 51) TTCTTTTCTCCTACTCTTTCT 1 chr15:55176483-55176583 ( 77) TTTCTTCTTCTTTTCCCATTA 1 chr17:66412217-66412317 ( 34) CTCCGTCTTCTTCCTTGCTGT 1 chr3:156739411-156739511 ( 28) TTTTTTTTTTTTTTCGTTTTT 1 chr1:8863754-8863854 ( 4) TGCCTGCTGCCTGCTGCCTGC 1 chrX:99172201-99172301 ( 60) TCCCTGCCTCCTGCCGGCTCT 1 chr15:27731597-27731697 ( 35) CTCTTCCTGCCTTTTGTCTGG 1 chr13:40673912-40674012 ( 44) TGCCTCCATTTTCTCACTTGT 1 chr8:108790478-108790578 ( 11) AGCCTGCCTTCTCCTCCTTTT 1 chr1:30498516-30498616 ( 46) TTTCATTTGCCTTTTGCATCC 1 chr5:57505636-57505736 ( 5) TTCCAGTAGTCTTCTGCCTCT 1 chr16:96843676-96843776 ( 77) TTACTCCAGTCTCCTGACTTT 1 chr2:51830234-51830334 ( 18) TTCCTCCTTCGTGTTTCCTGA 1 chr8:60772816-60772916 ( 44) TTACGCTTGTTTCTCTTCTCT 1 chr18:39855615-39855715 ( 69) TTCCTTCTTTTCCTCTCCTTA 1 chr4:78012231-78012331 ( 53) TGTCAATTTCTTCTTCACTGT 1 chr9:86419270-86419370 ( 77) TTACATTTGCTGTTTTCCTCT 1 chrX:51278141-51278241 ( 56) CTCCTTTTTTTTCTTTCATTT 1 chr10:11049250-11049350 ( 74) TGTCACCATTTGCTCGTCTGT 1 chr13:6460717-6460817 ( 33) TGTTTTCATCTCTTTTCCTCA 1 chr16:82539107-82539207 ( 68) CCCCTCTTTCCTCTTGAATTT 1 chr16:94962484-94962584 ( 57) TTCTTCTCTCCCCCACTTTGT 1 chr10:16680940-16681040 ( 78) TGATGCTTTTTTTCTTGCTCT 1 chr13:99069731-99069831 ( 67) TTTCTCTATCCTTCCGTAGGT 1 chr12:70405328-70405428 ( 21) AGTCTACTCCCTTGCCGCTCT 1 chr8:49555778-49555878 ( 7) ACTTTTTTTTCTTTTTTTTTT 1 chr6:94020484-94020584 ( 26) TCCTATCTTCTGCTTCCTTTT 1 chrX:164637454-164637554 ( 76) TGTTTTCTTGTTCCTGTCTCA 1 chr1:122346819-122346919 ( 65) TTACATCTTCCTACTGTTTCC 1 chr4:95915468-95915568 ( 31) TGATTATCGCCTTCTTCATGT 1 chr2:159868014-159868114 ( 57) CCCCATCTTCCTTGTGGTTCT 1 chr16:70091888-70091988 ( 77) TGTCAATCGCCTCGCTTTTCT 1 chr3:65612242-65612342 ( 31) TTACAGTCCCCTTCTGCCTGA 1 chr5:131813233-131813333 ( 74) AGCTTTTCCCCTCGCCCATCT 1 chr4:12376769-12376869 ( 70) ATTTTCCACCTGCCCCCTTTT 1 chr14:120560363-12056046 ( 48) TGTCGCCCCCGCCCCATCTGT 1 chr8:14536586-14536686 ( 69) ATCCTACACCCGCCCCCTTTT 1 chr5:25784370-25784470 ( 35) TGTCTCTATTTCTTTACTTGC 1 chr16:21727817-21727917 ( 77) TTACACTTTTTGTTTCGTTTT 1 chr11:42497445-42497545 ( 3) ATTTGTTCTCTTTTTATATCT 1 chr15:91957185-91957285 ( 30) CTTTTTTTTCCCCCTAGTTCG 1 chr9:52738672-52738772 ( 80) AGTCGCCCCCTTTCAGCCTCC 1 chr15:48389344-48389444 ( 79) TGTTTTTCGCTCTCCTATTGG 1 chr3:88214173-88214273 ( 5) TGACGTCACTGTCTCGTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYCTYYYTCYTYYYBYYTBT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.57157 E= 7.3e+006 -73 -111 -1253 138 -1253 -52 70 81 -88 70 -1253 81 -1253 163 -1253 20 -59 -1253 -89 131 -173 95 -137 53 -1253 121 -1253 81 -47 31 -1253 90 -1253 -52 11 112 -1253 173 -369 -14 -1253 131 -169 47 -1253 -69 -89 141 -246 95 -169 70 -1253 116 -111 53 -305 63 -1253 116 -146 39 55 4 -205 83 -69 53 -88 131 -1253 12 -1253 -1253 -369 181 -1253 77 48 20 -146 -89 -111 127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYCTYYYTCYTYYYBYYTBT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 59 E= 7.3e+006 0.169492 0.101695 0.000000 0.728814 0.000000 0.152542 0.355932 0.491525 0.152542 0.355932 0.000000 0.491525 0.000000 0.677966 0.000000 0.322034 0.186441 0.000000 0.118644 0.694915 0.084746 0.423729 0.084746 0.406780 0.000000 0.508475 0.000000 0.491525 0.203390 0.271186 0.000000 0.525424 0.000000 0.152542 0.237288 0.610169 0.000000 0.728814 0.016949 0.254237 0.000000 0.542373 0.067797 0.389831 0.000000 0.135593 0.118644 0.745763 0.050847 0.423729 0.067797 0.457627 0.000000 0.491525 0.101695 0.406780 0.033898 0.338983 0.000000 0.627119 0.101695 0.288136 0.322034 0.288136 0.067797 0.389831 0.135593 0.406780 0.152542 0.542373 0.000000 0.305085 0.000000 0.000000 0.016949 0.983051 0.000000 0.372881 0.305085 0.322034 0.101695 0.118644 0.101695 0.677966 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYCTYYYTCYTYYYBYYTBT MEME-9 regular expression -------------------------------------------------------------------------------- T[TG][TC][CT]T[CT][CT][TCA][TG][CT][CT]T[TC][CT][TC][GCT][TC][CT]T[CTG]T -------------------------------------------------------------------------------- Time 3936.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGCCGC MEME-10 width = 8 sites = 2 llr = 24 E-value = 1.1e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGCCGC MEME-10 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a:aa:a probability G aa:a::a: matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGCCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCGC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr13:113877355-11387745 + 13 5.29e-06 CTGGCATCTT GGCGCCGC TGACCTGGCA chr5:52254408-52254508 - 7 5.29e-06 CTGTCTGTGT GGCGCCGC CTTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCGC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:113877355-11387745 5.3e-06 12_[+10]_80 chr5:52254408-52254508 5.3e-06 6_[-10]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCGC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGCCGC width=8 seqs=2 chr13:113877355-11387745 ( 13) GGCGCCGC 1 chr5:52254408-52254508 ( 7) GGCGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCGC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 14.7679 E= 1.1e+007 -765 -765 218 -765 -765 -765 218 -765 -765 218 -765 -765 -765 -765 218 -765 -765 218 -765 -765 -765 218 -765 -765 -765 -765 218 -765 -765 218 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCGC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGCCGC MEME-10 regular expression -------------------------------------------------------------------------------- GGCGCCGC -------------------------------------------------------------------------------- Time 4324.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:97636810-97636910 1.23e-01 100 chr17:66412217-66412317 3.51e-06 33_[-9(2.06e-06)]_27_[+7(2.35e-07)]_\ 4 chr6:94020484-94020584 2.34e-01 25_[+9(1.52e-05)]_54 chr14:99380802-99380902 4.91e-01 40_[-6(5.98e-05)]_45 chr2:68040736-68040836 1.05e-03 18_[-3(4.02e-06)]_72 chr1:8863754-8863854 3.86e-05 2_[-5(7.71e-05)]_6_[-5(7.71e-05)]_\ [+9(1.15e-05)]_3_[+7(7.18e-05)]_15_[-6(9.31e-05)]_7 chr12:6842806-6842906 9.99e-01 100 chrX:103086865-103086965 3.67e-02 39_[+3(9.23e-06)]_51 chr5:25025628-25025728 4.66e-04 2_[+7(4.68e-05)]_18_[-4(1.12e-05)]_\ 21_[-7(5.31e-05)]_4_[-5(4.85e-05)]_6 chr15:37607467-37607567 3.53e-01 31_[+3(3.00e-05)]_59 chr15:10921061-10921161 8.74e-03 32_[+2(3.07e-06)]_50 chr2:90559070-90559170 5.44e-01 57_[-8(4.08e-05)]_28 chr10:108855917-10885601 2.17e-01 100 chr1:158719825-158719925 8.65e-01 100 chr9:52738672-52738772 9.31e-02 79_[+9(8.49e-05)] chr11:35004707-35004807 2.47e-02 75_[-9(5.21e-05)]_4 chr2:114272572-114272672 3.85e-01 100 chr12:65673632-65673732 7.72e-01 100 chr6:31176462-31176562 1.12e-01 29_[+4(9.66e-05)]_60 chr10:122928737-12292883 5.52e-02 100 chr3:31433174-31433274 4.79e-06 9_[-4(2.02e-05)]_[-2(2.39e-08)]_62 chr12:51402007-51402107 1.77e-03 35_[+5(3.73e-05)]_5_[+3(2.43e-05)]_\ 42 chr1:21721203-21721303 5.49e-01 100 chr2:90612175-90612275 3.34e-10 15_[+3(6.88e-07)]_21_[-1(1.15e-06)]_\ 1_[+6(4.07e-06)]_17 chr9:4605352-4605452 6.49e-04 48_[+9(3.29e-06)]_31 chr14:108704929-10870502 1.43e-02 41_[-1(5.56e-05)]_38 chr8:18924402-18924502 9.05e-07 [-2(5.66e-10)]_69_[-4(9.66e-05)]_2 chr2:135439417-135439517 8.08e-02 21_[+2(4.50e-06)]_61 chr15:87339102-87339202 4.33e-01 100 chr8:40545635-40545735 9.56e-03 23_[-8(4.98e-06)]_62 chr4:37120231-37120331 5.30e-05 26_[+3(2.43e-05)]_34_[+9(2.38e-08)]_\ 9 chr12:95770117-95770217 6.21e-03 11_[-7(5.65e-07)]_74 chr9:92672824-92672924 5.44e-01 3_[+4(1.48e-05)]_86 chr1:30498516-30498616 8.95e-02 45_[+9(4.12e-06)]_34 chr10:66770299-66770399 7.16e-04 34_[+6(1.20e-06)]_51 chr7:144316731-144316831 5.28e-04 2_[+1(3.00e-05)]_25_[+8(1.58e-06)]_\ 37 chr10:76984590-76984690 5.29e-01 38_[-4(3.17e-05)]_51 chr5:25800868-25800968 5.19e-01 100 chr14:8615556-8615656 4.46e-01 50_[+5(6.84e-05)]_42 chr3:85340457-85340557 2.21e-03 54_[+8(7.53e-06)]_16_[-4(8.49e-06)]_\ 4 chr16:72527194-72527294 4.44e-01 100 chr18:64791117-64791217 7.86e-03 49_[+8(1.79e-06)]_36 chr14:48424653-48424753 8.68e-02 100 chr16:95481140-95481240 1.65e-01 100 chr3:123722538-123722638 8.12e-04 31_[-8(8.30e-07)]_13_[+3(4.47e-05)]_\ 31 chr4:55711933-55712033 8.52e-02 100 chr5:85615998-85616098 4.69e-03 17_[+4(7.81e-05)]_23_[+8(1.01e-05)]_\ 34 chr6:41057563-41057663 3.74e-02 82_[-5(4.85e-05)]_10 chr14:64585696-64585796 4.77e-05 34_[-1(7.98e-07)]_45 chrX:51278141-51278241 1.56e-02 12_[-5(3.73e-05)]_35_[+9(7.77e-06)]_\ 24 chr3:159029935-159030035 4.27e-02 [-3(4.93e-05)]_90 chr11:29428721-29428821 3.29e-02 55_[-3(4.47e-05)]_35 chr7:110164679-110164779 1.06e-04 43_[-2(1.34e-06)]_[+8(4.01e-06)]_24 chr4:42584772-42584872 3.52e-05 41_[+7(1.52e-05)]_44 chr15:59006585-59006685 2.18e-01 100 chr2:67657324-67657424 1.89e-01 100 chr18:22982274-22982374 3.37e-01 100 chr13:80666102-80666202 2.65e-01 60_[+8(7.40e-05)]_25 chr9:27956011-27956111 9.01e-02 100 chr13:45617959-45618059 4.54e-01 100 chr2:7051067-7051167 8.48e-05 2_[-2(3.07e-06)]_80 chr3:87676155-87676255 1.69e-01 78_[-8(1.23e-05)]_7 chr2:77788938-77789038 2.58e-03 2_[-3(2.23e-05)]_48_[-8(9.20e-06)]_\ 25 chr18:77257600-77257700 3.85e-04 5_[-4(8.13e-06)]_8_[+1(2.57e-06)]_\ 55 chr12:37772599-37772699 5.95e-02 100 chr10:14040547-14040647 4.76e-02 55_[-8(1.08e-06)]_30 chr13:95912080-95912180 7.17e-04 2_[+8(5.54e-06)]_83 chr4:64718101-64718201 9.99e-01 100 chr5:52134606-52134706 1.52e-01 [-4(3.17e-05)]_89 chr3:144437806-144437906 6.73e-04 12_[+3(3.14e-06)]_52_[-4(2.42e-05)]_\ 15 chr2:167139691-167139791 7.94e-05 32_[-9(1.52e-05)]_47 chr15:55265327-55265427 8.40e-02 26_[-7(2.30e-06)]_59 chr18:81861821-81861921 1.23e-04 46_[+4(5.84e-05)]_2_[+1(1.02e-06)]_\ 20 chr2:43003370-43003470 7.50e-06 20_[+1(3.20e-06)]_59 chr3:120572379-120572479 9.64e-01 100 chr9:25571199-25571299 2.91e-05 73_[+6(7.32e-10)]_12 chr12:24603216-24603316 6.66e-04 43_[+2(2.86e-07)]_39 chr2:135049278-135049378 2.74e-01 30_[-6(5.98e-05)]_55 chr1:193735822-193735922 2.73e-01 100 chr2:77841349-77841449 6.07e-01 100 chr13:68793292-68793392 4.75e-01 100 chr9:61278451-61278551 5.58e-06 52_[-3(4.02e-06)]_2_[-1(5.16e-05)]_\ 15 chr12:98602053-98602153 5.34e-01 100 chr6:24344191-24344291 5.27e-03 76_[-4(2.42e-05)]_13 chr14:105089246-10508934 3.61e-01 71_[+1(3.52e-05)]_8 chr2:115529770-115529870 8.36e-02 75_[+4(3.17e-05)]_14 chr9:41578368-41578468 6.60e-01 100 chr3:80712238-80712338 1.13e-01 100 chr8:49555778-49555878 1.74e-01 6_[-9(1.52e-05)]_73 chr15:41986163-41986263 8.30e-01 100 chr13:12001991-12002091 7.88e-02 100 chr18:43238231-43238331 6.79e-04 29_[-7(1.77e-05)]_5_[+1(7.25e-06)]_\ 30 chr8:79612940-79613040 7.48e-05 25_[+2(2.23e-06)]_57 chr14:80504339-80504439 4.26e-01 12_[+2(3.98e-05)]_70 chr6:77711997-77712097 7.67e-01 100 chr14:47532664-47532764 9.68e-01 100 chr9:10324707-10324807 4.61e-01 100 chr2:135281822-135281922 1.68e-03 30_[-5(5.72e-05)]_21_[+8(1.77e-05)]_\ 26 chrX:81715394-81715494 9.31e-01 100 chr15:76994406-76994506 2.62e-02 78_[+1(4.79e-05)]_1 chr12:26227730-26227830 1.34e-05 13_[+7(3.15e-05)]_9_[-9(8.44e-07)]_\ 4_[+1(2.57e-06)]_17 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5.04e-01 3_[-9(9.06e-05)]_76 chr10:90606625-90606725 1.15e-02 65_[-5(8.71e-06)]_27 chr2:165204867-165204967 9.98e-07 29_[-4(5.84e-05)]_39_[+7(8.58e-06)]_\ 6 chr6:111452506-111452606 1.93e-03 8_[+5(8.71e-06)]_84 chr7:91890464-91890564 3.11e-01 100 chr8:67115275-67115375 6.02e-01 100 chr8:15942450-15942550 1.09e-08 18_[-5(8.71e-06)]_4_[-1(9.04e-07)]_\ 8_[-7(3.37e-05)]_26 chr13:94941190-94941290 3.15e-05 41_[-2(8.52e-07)]_41 chr3:13896222-13896322 6.21e-01 100 chr13:11915481-11915581 7.46e-01 100 chr16:28137765-28137865 1.54e-01 100 chr1:91211066-91211166 2.45e-04 65_[-2(7.14e-08)]_17 chr13:6460717-6460817 4.73e-01 32_[-9(9.48e-06)]_47 chr5:126007738-126007838 3.21e-02 16_[-6(5.98e-05)]_69 chr5:20266136-20266236 7.20e-01 100 chr2:75603524-75603624 2.39e-01 100 chr19:44364026-44364126 1.43e-03 26_[+9(4.49e-05)]_6_[-1(1.16e-05)]_\ 26 chr15:30707315-30707415 7.17e-02 21_[+5(4.85e-05)]_71 chr13:95116211-95116311 2.92e-01 100 chr6:31125624-31125724 7.35e-01 100 chr17:31973575-31973675 4.41e-02 100 chr6:60798210-60798310 6.37e-01 100 chr12:105427284-10542738 4.93e-02 10_[-1(6.57e-06)]_69 chr5:36918926-36919026 4.83e-01 19_[-3(6.34e-05)]_71 chr5:41974560-41974660 1.25e-05 47_[+5(5.72e-05)]_14_[+8(3.05e-07)]_\ 16 chr13:101632719-10163281 3.75e-03 43_[+5(6.84e-05)]_21_[+3(3.14e-06)]_\ 18 chr9:40746851-40746951 8.87e-03 71_[+3(1.01e-05)]_19 chr10:18496998-18497098 1.67e-05 22_[-1(1.82e-05)]_3_[-8(1.23e-05)]_\ [-2(5.63e-05)]_21 chr4:118083566-118083666 1.02e-04 26_[-2(3.19e-08)]_56 chr17:86014218-86014318 2.50e-01 56_[-2(4.19e-05)]_26 chr4:78012231-78012331 3.51e-04 [+1(6.57e-06)]_31_[-9(7.77e-06)]_2_\ [+1(7.40e-05)]_4 chr17:78172966-78173066 1.76e-01 100 chr12:44608494-44608594 2.33e-01 100 chr4:80950254-80950354 4.92e-03 12_[-7(1.67e-06)]_73 chr1:153304458-153304558 1.11e-01 65_[-3(1.57e-06)]_25 chr17:86392393-86392493 1.43e-03 51_[-4(5.91e-06)]_15_[-4(7.20e-05)]_\ 12 chr5:53677972-53678072 2.17e-01 84_[+7(9.02e-05)]_1 chr1:124332330-124332430 7.04e-05 2_[-1(9.66e-06)]_38_[-3(1.57e-06)]_\ 29 chr1:151124964-151125064 3.35e-06 56_[-1(3.67e-07)]_23 chr13:44235163-44235263 7.23e-04 50_[-1(4.86e-06)]_29 chr16:7892708-7892808 1.75e-03 31_[-8(4.08e-05)]_54 chr15:68196452-68196552 6.12e-04 71_[-3(4.47e-05)]_19 chr1:122346819-122346919 3.10e-02 64_[+9(1.82e-05)]_15 chr18:81742475-81742575 1.47e-02 27_[+3(2.23e-05)]_13_[+4(1.88e-05)]_\ 39 chr11:21180667-21180767 5.07e-02 87_[-4(5.84e-05)]_2 chr4:56674122-56674222 7.11e-02 100 chr16:54251889-54251989 4.05e-02 59_[-7(8.31e-08)]_26 chr7:40748929-40749029 1.89e-01 100 chr5:24970899-24970999 8.36e-02 100 chr18:35855239-35855339 3.14e-07 27_[+6(5.98e-05)]_4_[-1(2.75e-08)]_\ 33 chr12:89396184-89396284 2.03e-01 100 chr5:10662461-10662561 7.80e-01 100 chr18:31350160-31350260 2.52e-04 8_[-2(3.58e-05)]_10_[-4(8.13e-06)]_\ 53 chr18:68129735-68129835 7.71e-01 100 chr5:81590322-81590422 1.63e-03 27_[-9(4.84e-05)]_1_[+1(2.55e-05)]_\ 30 chr4:77648860-77648960 2.75e-01 46_[+4(5.84e-05)]_43 chr12:5328655-5328755 3.07e-01 100 chr1:143171410-143171510 1.67e-03 80_[-5(2.86e-05)]_12 chr18:39855615-39855715 1.09e-11 12_[-1(1.10e-09)]_32_[+9(7.77e-06)]_\ 14 chr15:56333115-56333215 5.43e-01 100 chr4:36183609-36183709 2.20e-01 100 chr7:101538004-101538104 1.22e-02 36_[-3(4.02e-06)]_54 chr4:111025779-111025879 8.73e-01 100 chr9:43935603-43935703 5.47e-03 100 chr11:112970649-11297074 8.57e-04 18_[-1(3.87e-08)]_13_[+4(5.84e-05)]_\ 11_[-1(3.20e-06)]_5 chrX:137812050-137812150 9.96e-01 100 chr12:13054533-13054633 1.59e-03 11_[-9(1.42e-06)]_24_[-4(3.17e-05)]_\ 33 chr19:46875747-46875847 1.29e-04 57_[+2(1.34e-06)]_25 chr8:86201762-86201862 9.55e-06 48_[+8(8.30e-07)]_18_[+3(1.66e-05)]_\ 9 chr4:102511401-102511501 3.12e-03 45_[+1(1.16e-05)]_34 chr1:25291607-25291707 1.72e-01 3_[-3(1.66e-05)]_87 chr17:5260981-5261081 7.46e-02 47_[+4(7.20e-05)]_42 chr9:96425962-96426062 8.32e-01 100 chr13:6114558-6114658 9.92e-01 100 chr13:38602936-38603036 6.84e-04 47_[-3(4.93e-05)]_6_[-3(1.57e-06)]_\ 27 chr18:65101545-65101645 4.41e-05 34_[-8(1.35e-05)]_30_[-4(1.12e-05)]_\ 10 chr18:10150797-10150897 8.29e-01 100 chr4:52284837-52284937 3.12e-03 32_[-8(6.42e-05)]_53 chr15:40364085-40364185 2.50e-04 27_[-5(1.99e-05)]_15_[+3(3.27e-05)]_\ 40 chr1:89193511-89193611 8.60e-07 25_[+1(3.95e-06)]_3_[-8(4.74e-07)]_\ 36 chr19:29889140-29889240 4.52e-02 71_[+3(6.88e-07)]_19 chr15:17054006-17054106 9.81e-01 100 chr13:6836681-6836781 2.27e-04 6_[-8(3.22e-05)]_31_[+2(1.85e-07)]_\ 30 chr13:42916031-42916131 9.21e-06 38_[-7(2.75e-07)]_27_[-8(8.34e-06)]_\ 5 chr10:102449365-10244946 2.71e-04 81_[+2(3.91e-07)]_1 chr15:20897568-20897668 9.47e-04 73_[-4(1.33e-05)]_16 chr1:123414378-123414478 2.47e-02 51_[+1(3.20e-06)]_28 chr13:42963878-42963978 6.34e-03 4_[-8(9.20e-06)]_44_[-8(2.27e-06)]_\ 22 chr5:110522473-110522573 6.63e-03 24_[-7(4.99e-05)]_61 chr2:97714460-97714560 2.53e-06 43_[+4(1.12e-05)]_6_[+1(4.01e-10)]_\ [-4(1.12e-05)]_8 chr12:34053152-34053252 3.94e-01 100 chr5:125732927-125733027 7.95e-03 66_[-4(1.18e-06)]_23 chr11:75231148-75231248 2.26e-04 1_[+1(1.83e-07)]_78 chr5:27673685-27673785 5.03e-06 35_[+6(7.32e-10)]_50 chr5:16241121-16241221 8.21e-03 20_[+4(1.48e-05)]_31_[+4(1.48e-05)]_\ 27 chr18:72992464-72992564 4.05e-01 38_[-4(9.66e-05)]_51 chr17:25607994-25608094 4.89e-05 20_[-5(2.86e-05)]_43_[-4(1.33e-05)]_\ 18 chr6:74101066-74101166 8.41e-01 100 chr15:29441963-29442063 6.81e-01 100 chr6:81210076-81210176 9.80e-01 100 chr16:25622589-25622689 2.91e-02 76_[-7(3.80e-06)]_9 chr11:107372607-10737270 2.81e-01 100 chr11:22918754-22918854 3.59e-04 63_[-1(4.01e-10)]_[+4(1.12e-05)]_5 chr11:71995899-71995999 5.85e-03 10_[+5(4.85e-05)]_40_[-3(9.23e-06)]_\ 32 chr3:65612242-65612342 3.10e-04 1_[-9(4.60e-06)]_8_[-9(2.57e-05)]_\ 49 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-39.local ********************************************************************************