******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.CT_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:106349894-106349994 1.0000 100 chr17:64139201-64139301 1.0000 100 chr6:118885534-118885634 1.0000 100 chr14:114249955-11425005 1.0000 100 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1.0000 100 chr13:8537936-8538036 1.0000 100 chr5:55367613-55367713 1.0000 100 chr5:60609165-60609265 1.0000 100 chr13:110619008-11061910 1.0000 100 chr9:42321376-42321476 1.0000 100 chr10:28191401-28191501 1.0000 100 chr4:140192231-140192331 1.0000 100 chr17:82859808-82859908 1.0000 100 chr4:97122471-97122571 1.0000 100 chr17:75153135-75153235 1.0000 100 chr12:68514454-68514554 1.0000 100 chr4:99238237-99238337 1.0000 100 chr1:161602110-161602210 1.0000 100 chr17:84282313-84282413 1.0000 100 chr5:74260356-74260456 1.0000 100 chr1:133842270-133842370 1.0000 100 chr1:159565089-159565189 1.0000 100 chr13:57796370-57796470 1.0000 100 chr16:15520845-15520945 1.0000 100 chr15:73361576-73361676 1.0000 100 chr1:132765705-132765805 1.0000 100 chr18:79049476-79049576 1.0000 100 chr11:35933089-35933189 1.0000 100 chr4:78182448-78182548 1.0000 100 chr16:64974599-64974699 1.0000 100 chr7:82025801-82025901 1.0000 100 chr5:49204940-49205040 1.0000 100 chr18:33918630-33918730 1.0000 100 chr12:107972510-10797261 1.0000 100 chr5:27677224-27677324 1.0000 100 chr18:28890532-28890632 1.0000 100 chr18:65532335-65532435 1.0000 100 chr5:116508886-116508986 1.0000 100 chr4:96696528-96696628 1.0000 100 chr12:16181291-16181391 1.0000 100 chr1:22719551-22719651 1.0000 100 chr18:38088751-38088851 1.0000 100 chr15:68439801-68439901 1.0000 100 chr4:57048509-57048609 1.0000 100 chr7:125102399-125102499 1.0000 100 chr4:137960265-137960365 1.0000 100 chr9:46713335-46713435 1.0000 100 chr12:5328622-5328722 1.0000 100 chrX:135936411-135936511 1.0000 100 chr12:29665002-29665102 1.0000 100 chr19:42226432-42226532 1.0000 100 chr8:100094086-100094186 1.0000 100 chr1:18058184-18058284 1.0000 100 chr1:26909888-26909988 1.0000 100 chr17:10390806-10390906 1.0000 100 chr9:96822932-96823032 1.0000 100 chr13:20546476-20546576 1.0000 100 chr13:51523233-51523333 1.0000 100 chr18:62109996-62110096 1.0000 100 chr18:5146857-5146957 1.0000 100 chr4:75963287-75963387 1.0000 100 chr15:53131292-53131392 1.0000 100 chr1:102944644-102944744 1.0000 100 chr19:25713344-25713444 1.0000 100 chr15:30706535-30706635 1.0000 100 chr13:23270257-23270357 1.0000 100 chr13:54312693-54312793 1.0000 100 chr10:111784326-11178442 1.0000 100 chr15:31921379-31921479 1.0000 100 chr1:132928422-132928522 1.0000 100 chr13:54855842-54855942 1.0000 100 chr5:140803794-140803894 1.0000 100 chr2:102228372-102228472 1.0000 100 chr12:52878744-52878844 1.0000 100 chr6:5795282-5795382 1.0000 100 chr11:92890039-92890139 1.0000 100 chr5:52323416-52323516 1.0000 100 chr5:37860428-37860528 1.0000 100 chr18:70673748-70673848 1.0000 100 chr17:31319974-31320074 1.0000 100 chr6:100892416-100892516 1.0000 100 chr15:40396980-40397080 1.0000 100 chr6:107623344-107623444 1.0000 100 chr16:32520528-32520628 1.0000 100 chr11:118635727-11863582 1.0000 100 chr11:36653893-36653993 1.0000 100 chr11:90355569-90355669 1.0000 100 chr3:75705953-75706053 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.CT_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.CT_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.CT_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.CT_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.260 C 0.240 G 0.240 T 0.260 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L6.CT_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.277 C 0.223 G 0.223 T 0.277 ******************************************************************************** ******************************************************************************** MOTIF MWMKRSTGCCMYCTASTGGCH MEME-1 width = 21 sites = 65 llr = 754 E-value = 4.2e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif MWMKRSTGCCMYCTASTGGCH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3341412:1:5::1511::23 pos.-specific C 5242143:9a45a123:::64 probability G 122343:8::1:::15:a811 matrix T 14141161:::5:8218:222 bits 2.2 * * 1.9 * * * 1.7 * * * 1.5 ** * * Relative 1.3 *** * * Entropy 1.1 *** * *** (16.7 bits) 0.9 *** *** *** 0.6 ******** *** 0.4 ******** ***** 0.2 * ******************* 0.0 --------------------- Multilevel CTATACTGCCATCTAGTGGCC consensus AACGGGC CC CC A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWMKRSTGCCMYCTASTGGCH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr8:78741847-78741947 + 51 2.58e-09 aaatattttC CAAGACTGCCCTCTAGTGGAA ATCTAGAAGC chr5:73540119-73540219 - 38 6.82e-09 GCCTGGAACA ACAGGTTGCCACCTAGTGGCC ACCCAGCAAA chr1:22487255-22487355 + 43 8.14e-09 GTATGAGACT ATAGCCTGCCATCTAGTGGCA GAGAGTCTAT chr4:150965079-150965179 + 73 9.72e-09 gttccaaggg atctgatgccctcttgtggcc tgcctgg chr8:27679115-27679215 - 38 1.16e-08 TTAAGTTAGT CAATACTGACCTCTAGTGGCA TAGAGCCAAA chr4:99238237-99238337 - 51 1.93e-08 CTCCCAGTGG ATCTGATGCCCTCTTCTGGCC TTCAAAGGCA chr3:23063121-23063221 - 36 2.66e-08 GGAAATAGAT CGCTATTGCCACCTCCTGGCA AGCAAACCAC chr12:56058394-56058494 - 69 3.13e-08 GTGGGCTGTG CAAGTGCGCCATCTGCTGGCC GCGGGGACTC chr11:35693079-35693179 + 60 3.66e-08 TCCTGCAGGG CTCTGTCGCCACCTATTGGCC ACTCTTGGCA chr11:92890039-92890139 + 55 4.27e-08 GGTGATGGCA CAATAGTGCCCTCTAGTGACA AGAAAACTGT chr1:39504203-39504303 + 46 4.27e-08 ttaagaggat atctgacgccctcttctggcc tacagcaggc chr4:57673236-57673336 - 13 4.27e-08 GGCTCAGGCT CATGTGTGCCCCCTAGTGGCT GGATCATGTA chr7:62209294-62209394 + 68 6.62e-08 GCAGGCTGTT CGCGGCTTCCATCTAGTGGAC ACTAGGTGGC chr10:20290308-20290408 - 37 6.62e-08 CCTAGTAGCT CACTGCCGCCACCTCCTGGAG ATGTAGGGAC chr6:51723037-51723137 + 20 7.65e-08 TCCACCTGAG AAAGAGTTCCCTCTACTGGCT GATGGGAGCT chr1:47277709-47277809 - 19 7.65e-08 TTAAATGAGT AAAGAGTGCCCCCAAGTGGCT ACATACAATA chr15:8382138-8382238 - 52 8.83e-08 ACAATAGTTG AAAGTGTGCCCTCTTGTGGCG TTCTTAGATT chr3:89688611-89688711 + 39 1.16e-07 AGCCCTGACT CAATGCTGCCATCCGGTGGAC AGAAGGGAAG chr15:19360593-19360693 - 58 1.52e-07 TCTGATTGCG CAGGAATGCCACCTAGTGTCA CAACAGTTAC chr4:57607488-57607588 + 80 1.74e-07 ACATAAAGGG ATGTGGCGCCCCCTCGTGGAT chr3:53735120-53735220 - 27 2.25e-07 AATACTGAAG ACATAGTGCCATCTGGTGGGA GAAAGGAATT chr1:105092450-105092550 - 43 2.56e-07 GCCTAAGAGC CACTACTGCCCTCTTGTGTTT CTGTGATGGA chr18:42533505-42533605 - 57 2.56e-07 CAGTTAATAT AAATACTGCCATCTACAGGAT CACCAAACCT chr8:47872303-47872403 - 27 2.56e-07 CGGCTGTGGC TGAGATCGCCCTCTAGTGGCG ATTAAGAGCA chr15:53785355-53785455 + 16 3.27e-07 TTAATCAGAA ACCAAGCGCCACCTAGAGGCA GGAGGGAGAA chr5:77803464-77803564 - 67 3.69e-07 ACCAGAAAGT CAAGGCTGCCCTCCTCAGGCC ACTTTGGGAA chr10:25681206-25681306 - 28 5.28e-07 TAAGGTTACT TTTTGGCGCCACCAAGTGGCC ACACTTAACG chr10:99577224-99577324 + 14 5.93e-07 ATTGATAGTG TTTCTCTGCCCCCTAGTGGAC TGGCTGCAGA chr13:71105167-71105267 - 36 5.93e-07 AAAGGCTGTC TTCGGCTGCCACCTAGCGTCC GCCTTCGGAA chr15:12267961-12268061 + 47 6.64e-07 TTTCTGTGGT GTGCTGTGCCCCCTGGTGGCA GCCTGCTTGT chr6:72164819-72164919 + 53 7.43e-07 ATGAGCCGGT ACGCAGCGCCACCTAGTGTCG TGAAGCCGTG chr14:14985190-14985290 + 75 8.32e-07 GGACCTAGCG CACCACTGCCCTCTGCTGTTT GCTTC chr10:19185894-19185994 + 58 9.30e-07 AAGCAGAGTC GTGTGCTGCCATCTATTGGTA ATTCTGTAAA chr16:34207943-34208043 - 31 1.04e-06 CCGGCATGGT TACTACTGCCATCTCATGGTG GATGGATATT chr1:31378977-31379077 - 33 1.42e-06 GTTCCAGAGG ATCTAATGACCTCTTCTGGCT TCCATAAGTA chr1:161602110-161602210 + 35 1.75e-06 GGAGACATGA TGACATTTCCCTCTAGTGGCT AAAGAGATAT chr7:61878513-61878613 + 58 1.94e-06 ATGTACTTGG ATATGGAACCATCTAGTGGAA AATGAGAGCA chr7:35823849-35823949 - 57 1.94e-06 TTGAATGTGG CGGTGCTGCCACCTCAAGGTC CCTCACTGCA chr14:73712380-73712480 + 68 2.14e-06 CATACATGGG CCACACCTCCCTCTTTTGGCA GAGCCTTCCT chr19:25713344-25713444 - 38 3.17e-06 CGGCTCCATT CTCAGGCGTCACCTAGTGGGC GCTGAGGAGA chr6:100563690-100563790 + 79 3.17e-06 GGACACCCGG CTCTAGCACCGCCCAGTGGCC G chr12:16853449-16853549 - 57 3.17e-06 CAGAGCGGGA TGCTCCAGCCCCCTCTTGGCA GAGGCTGTCT chr3:115541715-115541815 + 66 4.60e-06 agtatgaaga gatctgagccctcttctggcc tctgtggata chr12:89020705-89020805 + 24 5.52e-06 TTGCAAAGTT CTGCACTTCCACCTGGAGGTA GACAGGCTCC chr11:57624536-57624636 + 59 7.17e-06 CCCACTCTAT AAGGGATGCCACCGAATGGCA TGAACTAGCA chr1:30503215-30503315 + 11 7.17e-06 TGCCATGTAC CTTTACTGCCATCTGCTGATG GTGAATCTCT chr9:27999408-27999508 - 49 7.17e-06 TCTGGAGTGT CTTAGCAGACCTCTCGTGGTC TATTCGATTC chr3:23499873-23499973 - 29 7.82e-06 ATAAAGACTC CTCTAGCTCCATCTAATGTTT GGCTGTGAGT chr4:137960265-137960365 - 1 9.26e-06 AATGTACCAG GCTGGGATCCATCTCGTGGCT chr10:85458905-85459005 + 80 1.09e-05 ACTCACAGAG CGCTCCAGCCGCCAGCTGGCC chr9:111939538-111939638 - 33 1.28e-05 CAACATGGGC TCCTATCGCCCCCTATTGTTA GAAGCCTGTA chr3:100998026-100998126 - 39 1.39e-05 AGCCAGATCT CTCAAGTGACCTCATATGGCC CAAGTTCTGA chr18:86540079-86540179 + 57 1.50e-05 TGAAGAAGTA TAAGAGAGACATCTACTGGGG AGAATGAAGC chr12:91314142-91314242 + 56 1.63e-05 ACTGATGGTT CAATACTGACGACTAGTGGTC AAAAACAATA chr3:105004120-105004220 + 50 1.76e-05 CGCCTGGTCC CCAGTCAGCCGCCTCGTCGCA GCACGCTGGC chr2:75603492-75603592 - 19 2.04e-05 CTACAGCGCT CCACACAGCCATCCGGAGGAG GCTCGGGATG chr11:117407828-11740792 - 58 2.37e-05 CTAGCATATG CTCCCCCTCCCCCTCCCGTCC GCCTTTGCAT chr2:71688494-71688594 + 33 2.37e-05 gattaaagga atgtgccgtcaccgcctggct TGTGATTTGA chr5:37860428-37860528 - 76 2.74e-05 AGGG AGCCATAACCATCTACAGGCA CCCAACACAC chr18:33918630-33918730 + 22 3.16e-05 CAGCTTACAC AGGAGATGCCACCTACACGCC ATATGCCTTC chr13:20546476-20546576 + 24 3.63e-05 GAGAAATTTC ACCGTGTTCCACCCCCTGTAC CTCCAGCTTC chr8:12073559-12073659 + 23 3.89e-05 GGCTGTGTTC CAAGTCCGCCCCCACATGTGC TTTTACCTCA chrX:71436328-71436428 - 42 3.89e-05 ACACCTTTCC AGATGGTGTCATCTCTAGGAA AAAGCCCTAA chrX:19919828-19919928 + 8 3.89e-05 aagcttg ctaagttgccacccactgaat ttactttagg chr10:69556217-69556317 + 54 6.55e-05 TCCGCCCGGA GCAACACGCCCCCTAGCGTCC CATTCGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWMKRSTGCCMYCTASTGGCH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:78741847-78741947 2.6e-09 50_[+1]_29 chr5:73540119-73540219 6.8e-09 37_[-1]_42 chr1:22487255-22487355 8.1e-09 42_[+1]_37 chr4:150965079-150965179 9.7e-09 72_[+1]_7 chr8:27679115-27679215 1.2e-08 37_[-1]_42 chr4:99238237-99238337 1.9e-08 50_[-1]_29 chr3:23063121-23063221 2.7e-08 35_[-1]_44 chr12:56058394-56058494 3.1e-08 68_[-1]_11 chr11:35693079-35693179 3.7e-08 59_[+1]_20 chr11:92890039-92890139 4.3e-08 54_[+1]_25 chr1:39504203-39504303 4.3e-08 45_[+1]_34 chr4:57673236-57673336 4.3e-08 12_[-1]_67 chr7:62209294-62209394 6.6e-08 67_[+1]_12 chr10:20290308-20290408 6.6e-08 36_[-1]_43 chr6:51723037-51723137 7.6e-08 19_[+1]_60 chr1:47277709-47277809 7.6e-08 18_[-1]_61 chr15:8382138-8382238 8.8e-08 51_[-1]_28 chr3:89688611-89688711 1.2e-07 38_[+1]_41 chr15:19360593-19360693 1.5e-07 57_[-1]_22 chr4:57607488-57607588 1.7e-07 79_[+1] chr3:53735120-53735220 2.3e-07 26_[-1]_53 chr1:105092450-105092550 2.6e-07 42_[-1]_37 chr18:42533505-42533605 2.6e-07 56_[-1]_23 chr8:47872303-47872403 2.6e-07 26_[-1]_53 chr15:53785355-53785455 3.3e-07 15_[+1]_64 chr5:77803464-77803564 3.7e-07 66_[-1]_13 chr10:25681206-25681306 5.3e-07 27_[-1]_52 chr10:99577224-99577324 5.9e-07 13_[+1]_66 chr13:71105167-71105267 5.9e-07 35_[-1]_44 chr15:12267961-12268061 6.6e-07 46_[+1]_33 chr6:72164819-72164919 7.4e-07 52_[+1]_27 chr14:14985190-14985290 8.3e-07 74_[+1]_5 chr10:19185894-19185994 9.3e-07 57_[+1]_22 chr16:34207943-34208043 1e-06 30_[-1]_49 chr1:31378977-31379077 1.4e-06 32_[-1]_47 chr1:161602110-161602210 1.8e-06 34_[+1]_45 chr7:61878513-61878613 1.9e-06 57_[+1]_22 chr7:35823849-35823949 1.9e-06 56_[-1]_23 chr14:73712380-73712480 2.1e-06 67_[+1]_12 chr19:25713344-25713444 3.2e-06 37_[-1]_42 chr6:100563690-100563790 3.2e-06 78_[+1]_1 chr12:16853449-16853549 3.2e-06 56_[-1]_23 chr3:115541715-115541815 4.6e-06 65_[+1]_14 chr12:89020705-89020805 5.5e-06 23_[+1]_56 chr11:57624536-57624636 7.2e-06 58_[+1]_21 chr1:30503215-30503315 7.2e-06 10_[+1]_69 chr9:27999408-27999508 7.2e-06 48_[-1]_31 chr3:23499873-23499973 7.8e-06 28_[-1]_51 chr4:137960265-137960365 9.3e-06 [-1]_79 chr10:85458905-85459005 1.1e-05 79_[+1] chr9:111939538-111939638 1.3e-05 32_[-1]_47 chr3:100998026-100998126 1.4e-05 38_[-1]_41 chr18:86540079-86540179 1.5e-05 56_[+1]_23 chr12:91314142-91314242 1.6e-05 55_[+1]_24 chr3:105004120-105004220 1.8e-05 49_[+1]_30 chr2:75603492-75603592 2e-05 18_[-1]_61 chr11:117407828-11740792 2.4e-05 57_[-1]_22 chr2:71688494-71688594 2.4e-05 32_[+1]_47 chr5:37860428-37860528 2.7e-05 75_[-1]_4 chr18:33918630-33918730 3.2e-05 21_[+1]_58 chr13:20546476-20546576 3.6e-05 23_[+1]_56 chr8:12073559-12073659 3.9e-05 22_[+1]_57 chrX:71436328-71436428 3.9e-05 41_[-1]_38 chrX:19919828-19919928 3.9e-05 7_[+1]_72 chr10:69556217-69556317 6.5e-05 53_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWMKRSTGCCMYCTASTGGCH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MWMKRSTGCCMYCTASTGGCH width=21 seqs=65 chr8:78741847-78741947 ( 51) CAAGACTGCCCTCTAGTGGAA 1 chr5:73540119-73540219 ( 38) ACAGGTTGCCACCTAGTGGCC 1 chr1:22487255-22487355 ( 43) ATAGCCTGCCATCTAGTGGCA 1 chr4:150965079-150965179 ( 73) ATCTGATGCCCTCTTGTGGCC 1 chr8:27679115-27679215 ( 38) CAATACTGACCTCTAGTGGCA 1 chr4:99238237-99238337 ( 51) ATCTGATGCCCTCTTCTGGCC 1 chr3:23063121-23063221 ( 36) CGCTATTGCCACCTCCTGGCA 1 chr12:56058394-56058494 ( 69) CAAGTGCGCCATCTGCTGGCC 1 chr11:35693079-35693179 ( 60) CTCTGTCGCCACCTATTGGCC 1 chr11:92890039-92890139 ( 55) CAATAGTGCCCTCTAGTGACA 1 chr1:39504203-39504303 ( 46) ATCTGACGCCCTCTTCTGGCC 1 chr4:57673236-57673336 ( 13) CATGTGTGCCCCCTAGTGGCT 1 chr7:62209294-62209394 ( 68) CGCGGCTTCCATCTAGTGGAC 1 chr10:20290308-20290408 ( 37) CACTGCCGCCACCTCCTGGAG 1 chr6:51723037-51723137 ( 20) AAAGAGTTCCCTCTACTGGCT 1 chr1:47277709-47277809 ( 19) AAAGAGTGCCCCCAAGTGGCT 1 chr15:8382138-8382238 ( 52) AAAGTGTGCCCTCTTGTGGCG 1 chr3:89688611-89688711 ( 39) CAATGCTGCCATCCGGTGGAC 1 chr15:19360593-19360693 ( 58) CAGGAATGCCACCTAGTGTCA 1 chr4:57607488-57607588 ( 80) ATGTGGCGCCCCCTCGTGGAT 1 chr3:53735120-53735220 ( 27) ACATAGTGCCATCTGGTGGGA 1 chr1:105092450-105092550 ( 43) CACTACTGCCCTCTTGTGTTT 1 chr18:42533505-42533605 ( 57) AAATACTGCCATCTACAGGAT 1 chr8:47872303-47872403 ( 27) TGAGATCGCCCTCTAGTGGCG 1 chr15:53785355-53785455 ( 16) ACCAAGCGCCACCTAGAGGCA 1 chr5:77803464-77803564 ( 67) CAAGGCTGCCCTCCTCAGGCC 1 chr10:25681206-25681306 ( 28) TTTTGGCGCCACCAAGTGGCC 1 chr10:99577224-99577324 ( 14) TTTCTCTGCCCCCTAGTGGAC 1 chr13:71105167-71105267 ( 36) TTCGGCTGCCACCTAGCGTCC 1 chr15:12267961-12268061 ( 47) GTGCTGTGCCCCCTGGTGGCA 1 chr6:72164819-72164919 ( 53) ACGCAGCGCCACCTAGTGTCG 1 chr14:14985190-14985290 ( 75) CACCACTGCCCTCTGCTGTTT 1 chr10:19185894-19185994 ( 58) GTGTGCTGCCATCTATTGGTA 1 chr16:34207943-34208043 ( 31) TACTACTGCCATCTCATGGTG 1 chr1:31378977-31379077 ( 33) ATCTAATGACCTCTTCTGGCT 1 chr1:161602110-161602210 ( 35) TGACATTTCCCTCTAGTGGCT 1 chr7:61878513-61878613 ( 58) ATATGGAACCATCTAGTGGAA 1 chr7:35823849-35823949 ( 57) CGGTGCTGCCACCTCAAGGTC 1 chr14:73712380-73712480 ( 68) CCACACCTCCCTCTTTTGGCA 1 chr19:25713344-25713444 ( 38) CTCAGGCGTCACCTAGTGGGC 1 chr6:100563690-100563790 ( 79) CTCTAGCACCGCCCAGTGGCC 1 chr12:16853449-16853549 ( 57) TGCTCCAGCCCCCTCTTGGCA 1 chr3:115541715-115541815 ( 66) GATCTGAGCCCTCTTCTGGCC 1 chr12:89020705-89020805 ( 24) CTGCACTTCCACCTGGAGGTA 1 chr11:57624536-57624636 ( 59) AAGGGATGCCACCGAATGGCA 1 chr1:30503215-30503315 ( 11) CTTTACTGCCATCTGCTGATG 1 chr9:27999408-27999508 ( 49) CTTAGCAGACCTCTCGTGGTC 1 chr3:23499873-23499973 ( 29) CTCTAGCTCCATCTAATGTTT 1 chr4:137960265-137960365 ( 1) GCTGGGATCCATCTCGTGGCT 1 chr10:85458905-85459005 ( 80) CGCTCCAGCCGCCAGCTGGCC 1 chr9:111939538-111939638 ( 33) TCCTATCGCCCCCTATTGTTA 1 chr3:100998026-100998126 ( 39) CTCAAGTGACCTCATATGGCC 1 chr18:86540079-86540179 ( 57) TAAGAGAGACATCTACTGGGG 1 chr12:91314142-91314242 ( 56) CAATACTGACGACTAGTGGTC 1 chr3:105004120-105004220 ( 50) CCAGTCAGCCGCCTCGTCGCA 1 chr2:75603492-75603592 ( 19) CCACACAGCCATCCGGAGGAG 1 chr11:117407828-11740792 ( 58) CTCCCCCTCCCCCTCCCGTCC 1 chr2:71688494-71688594 ( 33) ATGTGCCGTCACCGCCTGGCT 1 chr5:37860428-37860528 ( 76) AGCCATAACCATCTACAGGCA 1 chr18:33918630-33918730 ( 22) AGGAGATGCCACCTACACGCC 1 chr13:20546476-20546576 ( 24) ACCGTGTTCCACCCCCTGTAC 1 chr8:12073559-12073659 ( 23) CAAGTCCGCCCCCACATGTGC 1 chrX:71436328-71436428 ( 42) AGATGGTGTCATCTCTAGGAA 1 chrX:19919828-19919928 ( 8) CTAAGTTGCCACCCACTGAAT 1 chr10:69556217-69556317 ( 54) GCAACACGCCCCCTAGCGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWMKRSTGCCMYCTASTGGCH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.2722 E= 4.2e-043 22 105 -153 -100 22 -40 -53 35 47 67 -53 -136 -136 -40 39 64 64 -153 67 -100 -117 90 60 -117 -85 31 -1267 104 -258 -1267 187 -100 -159 195 -1267 -258 -1267 217 -1267 -1267 87 95 -186 -1267 -417 105 -1267 92 -1267 217 -1267 -1267 -185 -127 -286 153 83 -5 -69 -85 -159 47 119 -159 -100 -227 -1267 156 -1267 -286 212 -1267 -258 -1267 182 -71 -59 139 -186 -71 8 79 -86 -47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWMKRSTGCCMYCTASTGGCH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 65 E= 4.2e-043 0.323077 0.461538 0.076923 0.138462 0.323077 0.169231 0.153846 0.353846 0.384615 0.353846 0.153846 0.107692 0.107692 0.169231 0.292308 0.430769 0.430769 0.076923 0.353846 0.138462 0.123077 0.415385 0.338462 0.123077 0.153846 0.276923 0.000000 0.569231 0.046154 0.000000 0.815385 0.138462 0.092308 0.861538 0.000000 0.046154 0.000000 1.000000 0.000000 0.000000 0.507692 0.430769 0.061538 0.000000 0.015385 0.461538 0.000000 0.523077 0.000000 1.000000 0.000000 0.000000 0.076923 0.092308 0.030769 0.800000 0.492308 0.215385 0.138462 0.153846 0.092308 0.307692 0.507692 0.092308 0.138462 0.046154 0.000000 0.815385 0.000000 0.030769 0.969231 0.000000 0.046154 0.000000 0.784615 0.169231 0.184615 0.584615 0.061538 0.169231 0.292308 0.384615 0.123077 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWMKRSTGCCMYCTASTGGCH MEME-1 regular expression -------------------------------------------------------------------------------- [CA][TA][AC][TG][AG][CG][TC]GCC[AC][TC]CT[AC][GC]TGGC[CAT] -------------------------------------------------------------------------------- Time 336.28 secs. ******************************************************************************** ******************************************************************************** MOTIF KGKGTGGGTGG MEME-2 width = 11 sites = 56 llr = 558 E-value = 2.2e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGKGTGGGTGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 221:::::2:2 pos.-specific C 111:::::::: probability G 453a:a9a:96 matrix T 324:a:::813 bits 2.2 * * * 1.9 *** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ******* (14.4 bits) 0.9 ******* 0.6 ******** 0.4 * ******** 0.2 *********** 0.0 ----------- Multilevel GGTGTGGGTGG consensus TAG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGKGTGGGTGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr5:80038826-80038926 - 50 5.26e-07 GTGAGACAAG TGGGTGGGTGG ATAGAATTGT chr10:91612073-91612173 - 17 5.26e-07 CCAGGTGTTC TGGGTGGGTGG ATGTGAAGAT chr7:49936772-49936872 - 41 5.26e-07 GAATAAGTGG TGTGTGGGTGG CCCAAAGCTA chr11:30150339-30150439 + 5 1.21e-06 cacc ggggtgggtgt tggacaacag chr13:118313622-11831372 + 50 1.21e-06 CATTCCTGAA AGTGTGGGTGG ACTTGGTAAC chr1:43511266-43511366 - 43 1.51e-06 GGCTTGTCAT GAGGTGGGTGG GGAGCCCTGT chr8:124252638-124252738 + 40 1.51e-06 GGATCCAAAG GATGTGGGTGG AAGTTACGCA chr14:121122632-12112273 + 6 1.51e-06 CTTGT GAGGTGGGTGG GCCCTCCTCT chr12:16181291-16181391 + 20 2.42e-06 atgcagccag tgtgtgggtgt tgaagatcca chr18:65532335-65532435 - 86 2.42e-06 GCTG GTGGTGGGTGG TTTTCACAGG chr15:36417391-36417491 + 79 2.42e-06 AAAAGATCAT GTGGTGGGTGG CATAGCTAAC chr17:48789760-48789860 + 37 2.42e-06 CGCCGTGACT GTGGTGGGTGG GGTGGGAAGA chr1:22211162-22211262 + 16 2.42e-06 CTGTCTCCTT TGTGTGGGTGT TCAGTTTGAG chr19:41697347-41697447 - 88 2.94e-06 AG GGGGTGGGTGA GGAACTGAGC chr18:25053242-25053342 - 52 2.94e-06 ATCTAAAGTG GGGGTGGGAGG GTTCTCGTCA chr18:75231742-75231842 - 41 2.94e-06 ACAGGGGGTG GGGGTGGGAGG GTGAGGATCA chr17:44384469-44384569 - 32 4.09e-06 CACTTGGTGC TTGGTGGGTGG TACTGTTTTA chr10:28191401-28191501 + 21 5.11e-06 GGGAAGCGCC TGTGTGGGTGA TTCCTGTGAT chr7:40812926-40813026 - 3 5.11e-06 ATGGGTTTGG TGTGTGGGAGG TG chr9:23252172-23252272 + 6 5.11e-06 TGCAG TGGGTGGGAGG CACAGGCAGC chr18:79143186-79143286 - 26 6.72e-06 ACGGAAGAGC GTCGTGGGTGG ACCTCATGTT chr8:27679115-27679215 - 78 8.00e-06 AGATGCTAGG GTGGTGGGTGT GGATTAATTT chr4:142624875-142624975 - 40 8.00e-06 GGAGGGAAGT GGCGTGGGTGA GCGAACGCAA chr6:62053209-62053309 - 42 8.00e-06 GAACAGTTCT ATTGTGGGTGG GATTGCAAAT chr1:26909888-26909988 - 79 9.11e-06 CATGAAGTTG AGTGTGGGTGA GAGGAGAGGA chr12:107096984-10709708 + 65 9.11e-06 GAAATGTACC AGTGTGGGAGG AGGATGGCAG chr11:20357053-20357153 + 50 9.11e-06 gccatcccag agtgtgggagg tggagacgga chr9:23977501-23977601 - 78 1.00e-05 CAGTATAGCA GAAGTGGGTGG CCTCGAACGT chr16:24216775-24216875 - 45 1.00e-05 GAGGTGAGAC TCTGTGGGTGG CTTTCTTTGC chr10:119706203-11970630 - 79 1.00e-05 GTAAACTTGG TATGTGGGTGT TTATCCTGCT chr10:4849827-4849927 + 45 1.08e-05 TTTTTCTACA GATGTGGGAGG TAGAAAACTG chr3:89572422-89572522 - 46 1.21e-05 GGTACAGGCA TTTGTGGGTGT CTTCATGGCA chr19:38292954-38293054 - 82 1.34e-05 GGGAGTCT GGAGTGGGTGA GAGGAAGCTC chrX:99172214-99172314 - 69 1.34e-05 GTGACAGCAG GGAGTGGGAGG CAGAGCCGGC chr11:36653893-36653993 + 88 1.66e-05 CCGCTCATGG AATGTGGGTGT AA chr1:132765705-132765805 + 27 1.66e-05 TGCAGATGGG TAGGTGGGTGA GTGGCTAAGG chr7:63697959-63698059 + 6 1.66e-05 GCCTG GCTGTGGGTGT GACTTCCAGG chr6:135838304-135838404 - 9 1.66e-05 GATTCATGAC GCTGTGGGTGT GAGCCATG chr18:62761425-62761525 - 27 1.66e-05 AGACTGCCAT AATGTGGGTGT GCATGCTGGT chr1:133842270-133842370 + 9 1.74e-05 CCGGTTGC GGGGTGGGTTG GTGTAACAAA chr6:31640620-31640720 + 58 1.99e-05 TCTGATGTTC CAGGTGGGTGG TACTGAATCC chr9:27999408-27999508 + 13 1.99e-05 CGTAGCCAAG AGAGTGGGTGT CTCATGTAAG chr8:87685145-87685245 + 43 2.12e-05 ctaaggatcc tgtgtgggaga agctgactgc chr15:91369692-91369792 - 88 2.28e-05 AC CGAGTGGGTGG CTCTGGTTCC chr9:60429879-60429979 - 25 2.59e-05 CACTCCTTCT GGTGTGTGTGG AAGCAGGAAA chr12:116551567-11655166 + 37 2.59e-05 AAGGAGGAAG CGtgtgggtga catgtgggta chr9:91652375-91652475 - 10 2.89e-05 GTTCTTTCCC TGTGTGGGTCG ATGGGTTTA chr2:172103819-172103919 + 41 3.06e-05 gaatcttcac aacgtgggtgt ctttctctgc chr13:54855842-54855942 + 75 3.29e-05 GCCTGGGAGA TGTGTGTGTGG GAACAGGGAG chr2:52602221-52602321 - 53 3.52e-05 CTAAGACCTG TTAGTGGGTGT TGCTATTTCA chr1:185898396-185898496 - 43 5.38e-05 CCAGTGGGTT TCCGTGGGAGG CTTAATCCAT chr2:137616613-137616713 - 27 5.86e-05 TCTCCAGATG GACGTGGGAGA GGAGAGATGT chr18:78819561-78819661 + 19 5.86e-05 CCAAGCAGAA GGCGTGGGTTT GCTCCAGTGC chr18:53316820-53316920 + 46 7.21e-05 CAGCTCCTGG TGCGTGGGTTT AGAAATGCTG chr15:38365273-38365373 - 58 8.68e-05 AGCTAACCAG ATGGTGGGTCG CTGGTGAAGG chr6:83408554-83408654 + 14 9.68e-05 CAAGAAAGCC AGCGTGCGTGG GAGAGATAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGKGTGGGTGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:80038826-80038926 5.3e-07 49_[-2]_40 chr10:91612073-91612173 5.3e-07 16_[-2]_73 chr7:49936772-49936872 5.3e-07 40_[-2]_49 chr11:30150339-30150439 1.2e-06 4_[+2]_85 chr13:118313622-11831372 1.2e-06 49_[+2]_40 chr1:43511266-43511366 1.5e-06 42_[-2]_47 chr8:124252638-124252738 1.5e-06 39_[+2]_50 chr14:121122632-12112273 1.5e-06 5_[+2]_84 chr12:16181291-16181391 2.4e-06 19_[+2]_70 chr18:65532335-65532435 2.4e-06 85_[-2]_4 chr15:36417391-36417491 2.4e-06 78_[+2]_11 chr17:48789760-48789860 2.4e-06 36_[+2]_53 chr1:22211162-22211262 2.4e-06 15_[+2]_74 chr19:41697347-41697447 2.9e-06 87_[-2]_2 chr18:25053242-25053342 2.9e-06 51_[-2]_38 chr18:75231742-75231842 2.9e-06 40_[-2]_49 chr17:44384469-44384569 4.1e-06 31_[-2]_58 chr10:28191401-28191501 5.1e-06 20_[+2]_69 chr7:40812926-40813026 5.1e-06 2_[-2]_87 chr9:23252172-23252272 5.1e-06 5_[+2]_84 chr18:79143186-79143286 6.7e-06 25_[-2]_64 chr8:27679115-27679215 8e-06 77_[-2]_12 chr4:142624875-142624975 8e-06 39_[-2]_50 chr6:62053209-62053309 8e-06 41_[-2]_48 chr1:26909888-26909988 9.1e-06 78_[-2]_11 chr12:107096984-10709708 9.1e-06 64_[+2]_25 chr11:20357053-20357153 9.1e-06 49_[+2]_40 chr9:23977501-23977601 1e-05 77_[-2]_12 chr16:24216775-24216875 1e-05 44_[-2]_45 chr10:119706203-11970630 1e-05 78_[-2]_11 chr10:4849827-4849927 1.1e-05 44_[+2]_45 chr3:89572422-89572522 1.2e-05 45_[-2]_44 chr19:38292954-38293054 1.3e-05 81_[-2]_8 chrX:99172214-99172314 1.3e-05 68_[-2]_21 chr11:36653893-36653993 1.7e-05 87_[+2]_2 chr1:132765705-132765805 1.7e-05 26_[+2]_63 chr7:63697959-63698059 1.7e-05 5_[+2]_84 chr6:135838304-135838404 1.7e-05 8_[-2]_81 chr18:62761425-62761525 1.7e-05 26_[-2]_63 chr1:133842270-133842370 1.7e-05 8_[+2]_81 chr6:31640620-31640720 2e-05 57_[+2]_32 chr9:27999408-27999508 2e-05 12_[+2]_77 chr8:87685145-87685245 2.1e-05 42_[+2]_47 chr15:91369692-91369792 2.3e-05 87_[-2]_2 chr9:60429879-60429979 2.6e-05 24_[-2]_65 chr12:116551567-11655166 2.6e-05 36_[+2]_53 chr9:91652375-91652475 2.9e-05 9_[-2]_80 chr2:172103819-172103919 3.1e-05 40_[+2]_49 chr13:54855842-54855942 3.3e-05 74_[+2]_15 chr2:52602221-52602321 3.5e-05 52_[-2]_37 chr1:185898396-185898496 5.4e-05 42_[-2]_47 chr2:137616613-137616713 5.9e-05 26_[-2]_63 chr18:78819561-78819661 5.9e-05 18_[+2]_71 chr18:53316820-53316920 7.2e-05 45_[+2]_44 chr15:38365273-38365373 8.7e-05 57_[-2]_32 chr6:83408554-83408654 9.7e-05 13_[+2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGKGTGGGTGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGKGTGGGTGG width=11 seqs=56 chr5:80038826-80038926 ( 50) TGGGTGGGTGG 1 chr10:91612073-91612173 ( 17) TGGGTGGGTGG 1 chr7:49936772-49936872 ( 41) TGTGTGGGTGG 1 chr11:30150339-30150439 ( 5) GGGGTGGGTGT 1 chr13:118313622-11831372 ( 50) AGTGTGGGTGG 1 chr1:43511266-43511366 ( 43) GAGGTGGGTGG 1 chr8:124252638-124252738 ( 40) GATGTGGGTGG 1 chr14:121122632-12112273 ( 6) GAGGTGGGTGG 1 chr12:16181291-16181391 ( 20) TGTGTGGGTGT 1 chr18:65532335-65532435 ( 86) GTGGTGGGTGG 1 chr15:36417391-36417491 ( 79) GTGGTGGGTGG 1 chr17:48789760-48789860 ( 37) GTGGTGGGTGG 1 chr1:22211162-22211262 ( 16) TGTGTGGGTGT 1 chr19:41697347-41697447 ( 88) GGGGTGGGTGA 1 chr18:25053242-25053342 ( 52) GGGGTGGGAGG 1 chr18:75231742-75231842 ( 41) GGGGTGGGAGG 1 chr17:44384469-44384569 ( 32) TTGGTGGGTGG 1 chr10:28191401-28191501 ( 21) TGTGTGGGTGA 1 chr7:40812926-40813026 ( 3) TGTGTGGGAGG 1 chr9:23252172-23252272 ( 6) TGGGTGGGAGG 1 chr18:79143186-79143286 ( 26) GTCGTGGGTGG 1 chr8:27679115-27679215 ( 78) GTGGTGGGTGT 1 chr4:142624875-142624975 ( 40) GGCGTGGGTGA 1 chr6:62053209-62053309 ( 42) ATTGTGGGTGG 1 chr1:26909888-26909988 ( 79) AGTGTGGGTGA 1 chr12:107096984-10709708 ( 65) AGTGTGGGAGG 1 chr11:20357053-20357153 ( 50) AGTGTGGGAGG 1 chr9:23977501-23977601 ( 78) GAAGTGGGTGG 1 chr16:24216775-24216875 ( 45) TCTGTGGGTGG 1 chr10:119706203-11970630 ( 79) TATGTGGGTGT 1 chr10:4849827-4849927 ( 45) GATGTGGGAGG 1 chr3:89572422-89572522 ( 46) TTTGTGGGTGT 1 chr19:38292954-38293054 ( 82) GGAGTGGGTGA 1 chrX:99172214-99172314 ( 69) GGAGTGGGAGG 1 chr11:36653893-36653993 ( 88) AATGTGGGTGT 1 chr1:132765705-132765805 ( 27) TAGGTGGGTGA 1 chr7:63697959-63698059 ( 6) GCTGTGGGTGT 1 chr6:135838304-135838404 ( 9) GCTGTGGGTGT 1 chr18:62761425-62761525 ( 27) AATGTGGGTGT 1 chr1:133842270-133842370 ( 9) GGGGTGGGTTG 1 chr6:31640620-31640720 ( 58) CAGGTGGGTGG 1 chr9:27999408-27999508 ( 13) AGAGTGGGTGT 1 chr8:87685145-87685245 ( 43) TGTGTGGGAGA 1 chr15:91369692-91369792 ( 88) CGAGTGGGTGG 1 chr9:60429879-60429979 ( 25) GGTGTGTGTGG 1 chr12:116551567-11655166 ( 37) CGTGTGGGTGA 1 chr9:91652375-91652475 ( 10) TGTGTGGGTCG 1 chr2:172103819-172103919 ( 41) AACGTGGGTGT 1 chr13:54855842-54855942 ( 75) TGTGTGTGTGG 1 chr2:52602221-52602321 ( 53) TTAGTGGGTGT 1 chr1:185898396-185898496 ( 43) TCCGTGGGAGG 1 chr2:137616613-137616713 ( 27) GACGTGGGAGA 1 chr18:78819561-78819661 ( 19) GGCGTGGGTTT 1 chr18:53316820-53316920 ( 46) TGCGTGGGTTT 1 chr15:38365273-38365373 ( 58) ATGGTGGGTCG 1 chr6:83408554-83408654 ( 14) AGCGTGCGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGKGTGGGTGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.5827 E= 2.2e-010 -50 -206 88 29 -37 -164 126 -63 -137 -64 53 63 -1245 -1245 217 -1245 -1245 -1245 -1245 185 -1245 -1245 217 -1245 -1245 -364 209 -295 -1245 -1245 217 -1245 -50 -1245 -1245 154 -1245 -264 203 -237 -79 -1245 136 -5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGKGTGGGTGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 56 E= 2.2e-010 0.196429 0.053571 0.410714 0.339286 0.214286 0.071429 0.535714 0.178571 0.107143 0.142857 0.321429 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.017857 0.946429 0.035714 0.000000 0.000000 1.000000 0.000000 0.196429 0.000000 0.000000 0.803571 0.000000 0.035714 0.910714 0.053571 0.160714 0.000000 0.571429 0.267857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGKGTGGGTGG MEME-2 regular expression -------------------------------------------------------------------------------- [GT][GA][TG]GTGGGTG[GT] -------------------------------------------------------------------------------- Time 648.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GMGSWGMGGAGGCTGGSGS MEME-3 width = 19 sites = 7 llr = 136 E-value = 5.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMGSWGMGGAGGCTGGSGS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :6::4:4::7:1:1::1:: pos.-specific C :4:41:4:::::9:::6:3 probability G a:a6:a1a91a91:aa396 matrix T ::::4:::11:::9:::11 bits 2.2 * * * * * ** 1.9 * * * * * ** 1.7 * * * * * ** 1.5 * * * ** *** ** * Relative 1.3 * * * ** ****** * Entropy 1.1 **** * ** ****** * (28.0 bits) 0.9 **** * ** ****** * 0.6 **** ************** 0.4 ******************* 0.2 ******************* 0.0 ------------------- Multilevel GAGGAGAGGAGGCTGGCGG consensus C CT C G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGSWGMGGAGGCTGGSGS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chr16:75232068-75232168 + 10 1.99e-11 tacataaat gaggtgcggaggctggggg tttacaactt chr3:35341017-35341117 + 29 2.31e-11 GGGCTGGAGA GCGGAGCGGAGGCTGGGGG ATCTGCAGGG chr1:132928422-132928522 - 17 3.95e-10 CACGCAGCCG GAGGTGGGGTGGCTGGCGG GTTAGAAGGC chr2:173342730-173342830 - 42 7.73e-10 AGCAAACGCA GCGCAGAGTAGGCTGGCGC CTCCATTTCC chr14:21553953-21554053 + 77 2.01e-09 GCGATGGGGA GCGGTGAGGAGACTGGCTG ATGTA chr1:18058184-18058284 - 72 3.35e-09 CCGAGGCCGG GAGCCGCGGGGGCTGGAGC CGAGGGCACG chr2:66383663-66383763 - 20 5.54e-09 TGAGTAATGC GAGCAGAGGAGGGAGGCGT GGCCCTTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGSWGMGGAGGCTGGSGS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:75232068-75232168 2e-11 9_[+3]_72 chr3:35341017-35341117 2.3e-11 28_[+3]_53 chr1:132928422-132928522 3.9e-10 16_[-3]_65 chr2:173342730-173342830 7.7e-10 41_[-3]_40 chr14:21553953-21554053 2e-09 76_[+3]_5 chr1:18058184-18058284 3.3e-09 71_[-3]_10 chr2:66383663-66383763 5.5e-09 19_[-3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGSWGMGGAGGCTGGSGS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMGSWGMGGAGGCTGGSGS width=19 seqs=7 chr16:75232068-75232168 ( 10) GAGGTGCGGAGGCTGGGGG 1 chr3:35341017-35341117 ( 29) GCGGAGCGGAGGCTGGGGG 1 chr1:132928422-132928522 ( 17) GAGGTGGGGTGGCTGGCGG 1 chr2:173342730-173342830 ( 42) GCGCAGAGTAGGCTGGCGC 1 chr14:21553953-21554053 ( 77) GCGGTGAGGAGACTGGCTG 1 chr1:18058184-18058284 ( 72) GAGCCGCGGGGGCTGGAGC 1 chr2:66383663-66383763 ( 20) GAGCAGAGGAGGGAGGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGSWGMGGAGGCTGGSGS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 49200 bayes= 13.3846 E= 5.7e+001 -945 -945 216 -945 104 94 -945 -945 -945 -945 216 -945 -945 94 136 -945 63 -64 -945 63 -945 -945 216 -945 63 94 -64 -945 -945 -945 216 -945 -945 -945 194 -95 136 -945 -64 -95 -945 -945 216 -945 -95 -945 194 -945 -945 194 -64 -945 -95 -945 -945 163 -945 -945 216 -945 -945 -945 216 -945 -95 136 36 -945 -945 -945 194 -95 -945 36 136 -95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGSWGMGGAGGCTGGSGS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 7 E= 5.7e+001 0.000000 0.000000 1.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.428571 0.142857 0.000000 0.428571 0.000000 0.000000 1.000000 0.000000 0.428571 0.428571 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.714286 0.000000 0.142857 0.142857 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.857143 0.142857 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.571429 0.285714 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.285714 0.571429 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGSWGMGGAGGCTGGSGS MEME-3 regular expression -------------------------------------------------------------------------------- G[AC]G[GC][AT]G[AC]GGAGGCTGG[CG]G[GC] -------------------------------------------------------------------------------- Time 954.64 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTGCWG MEME-4 width = 8 sites = 34 llr = 334 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTGCWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::5: pos.-specific C ::a::a1: probability G aa:3a:1a matrix T :::7::3: bits 2.2 *** * * 1.9 *** ** * 1.7 *** ** * 1.5 *** ** * Relative 1.3 *** ** * Entropy 1.1 ****** * (14.2 bits) 0.9 ****** * 0.6 ****** * 0.4 ****** * 0.2 ******** 0.0 -------- Multilevel GGCTGCAG consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr14:106506795-10650689 + 39 9.44e-06 AGTCAGCATG GGCTGCAG AAATTCACGA chr16:34334468-34334568 + 22 9.44e-06 GTTTATTTCA GGCTGCAG GCTCCTGAAC chr2:77863224-77863324 + 53 9.44e-06 CAAGGAAAAA GGCTGCAG CAGTGGGGAA chr8:12073559-12073659 - 91 9.44e-06 AG GGCTGCAG AAGACCATGG chr14:14985190-14985290 + 35 9.44e-06 TTTCACAGAC GGCTGCAG TAAAGCTGGG chr6:31640620-31640720 + 89 9.44e-06 AACAGGAGCT GGCTGCAG AGTA chr10:99577224-99577324 + 36 9.44e-06 CTAGTGGACT GGCTGCAG AATTGAACTG chr3:89688611-89688711 - 25 9.44e-06 ATTGAGTCAG GGCTGCAG CCTGGCAAGG chr9:28937881-28937981 - 88 9.44e-06 GCTGG GGCTGCAG GCAGTGTATT chr2:66383663-66383763 + 2 9.44e-06 G GGCTGCAG AGAAAGGGCC chr13:57796370-57796470 - 78 1.89e-05 GGCAGCGGCA GGCTGCTG ATTCGGCCGC chr17:65015650-65015750 + 82 1.89e-05 TCACAGTGTG GGCTGCTG TGACGCTTAG chr1:50323982-50324082 - 33 1.89e-05 TGAGAACCTA GGCTGCTG GCTCCAAGTA chr15:25372997-25373097 - 52 1.89e-05 TCTCAGAACC GGCTGCTG CATATTCTCA chr16:49965570-49965670 + 16 1.89e-05 TTGCTGCTCT GGCTGCTG CTGGCACTGT chr6:37242348-37242448 + 26 1.89e-05 TGGCATGCTT GGCTGCTG CGTGGTTGCA chr4:120188480-120188580 - 70 1.89e-05 CCGATGCCAG GGCTGCTG GAGAGGGCCA chr6:78078872-78078972 - 34 1.89e-05 CTCACACAGA GGCTGCTG CCAGCATGTG chr16:97438236-97438336 - 58 1.89e-05 AGGTTTCTCT GGCTGCTG GGGAGTCTTC chr19:25713344-25713444 + 18 2.65e-05 CTGGGAGTGT GGCGGCAG CCTCTCCTCA chr12:107972510-10797261 + 45 2.65e-05 CATCCTCTCG GGCGGCAG CATCTAGCAA chr8:117209089-117209189 - 49 2.65e-05 CGGCTTTACA GGCGGCAG GGGTGAGTCA chr9:72205919-72206019 + 22 2.65e-05 CTGTCTGCAC GGCGGCAG AGGCAGCACT chr3:154806572-154806672 - 88 2.65e-05 CCAAA GGCGGCAG CTGCTGCAAG chr16:7212672-7212772 - 38 2.65e-05 CGCCTGAGTG GGCGGCAG GCTTGCAAAG chr6:39527842-39527942 - 6 2.65e-05 CTGATCCCCA GGCGGCAG CCAGA chr6:12077343-12077443 - 35 3.41e-05 AAGGGAAGGA GGCTGCGG CACAGCATTT chr2:102273246-102273346 - 89 3.41e-05 TGGA GGCTGCGG TGAGGAGCCA chr12:72976668-72976768 - 12 3.41e-05 CTGCTGTAAG GGCTGCGG TCACCCGAAG chr7:125933398-125933498 - 18 3.41e-05 TACCAAGAGA GGCTGCGG GTTCTCCACA chr8:47872303-47872403 - 52 4.17e-05 GTGTACACCC GGCGGCTG TGGCTGAGAT chr16:41903652-41903752 + 60 4.93e-05 TATATACCTC GGCTGCCG TATGAGGGCT chr15:93896404-93896504 + 80 4.93e-05 ACTATTTCAA GGCTGCCG ATCTAAGCTC chr16:18166516-18166616 - 65 9.44e-05 AGCTTTGTGA GGCGGTAG ATGATCAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:106506795-10650689 9.4e-06 38_[+4]_54 chr16:34334468-34334568 9.4e-06 21_[+4]_71 chr2:77863224-77863324 9.4e-06 52_[+4]_40 chr8:12073559-12073659 9.4e-06 90_[-4]_2 chr14:14985190-14985290 9.4e-06 34_[+4]_58 chr6:31640620-31640720 9.4e-06 88_[+4]_4 chr10:99577224-99577324 9.4e-06 35_[+4]_57 chr3:89688611-89688711 9.4e-06 24_[-4]_68 chr9:28937881-28937981 9.4e-06 87_[-4]_5 chr2:66383663-66383763 9.4e-06 1_[+4]_91 chr13:57796370-57796470 1.9e-05 77_[-4]_15 chr17:65015650-65015750 1.9e-05 81_[+4]_11 chr1:50323982-50324082 1.9e-05 32_[-4]_60 chr15:25372997-25373097 1.9e-05 51_[-4]_41 chr16:49965570-49965670 1.9e-05 15_[+4]_77 chr6:37242348-37242448 1.9e-05 25_[+4]_67 chr4:120188480-120188580 1.9e-05 69_[-4]_23 chr6:78078872-78078972 1.9e-05 33_[-4]_59 chr16:97438236-97438336 1.9e-05 57_[-4]_35 chr19:25713344-25713444 2.6e-05 17_[+4]_75 chr12:107972510-10797261 2.6e-05 44_[+4]_48 chr8:117209089-117209189 2.6e-05 48_[-4]_44 chr9:72205919-72206019 2.6e-05 21_[+4]_71 chr3:154806572-154806672 2.6e-05 87_[-4]_5 chr16:7212672-7212772 2.6e-05 37_[-4]_55 chr6:39527842-39527942 2.6e-05 5_[-4]_87 chr6:12077343-12077443 3.4e-05 34_[-4]_58 chr2:102273246-102273346 3.4e-05 88_[-4]_4 chr12:72976668-72976768 3.4e-05 11_[-4]_81 chr7:125933398-125933498 3.4e-05 17_[-4]_75 chr8:47872303-47872403 4.2e-05 51_[-4]_41 chr16:41903652-41903752 4.9e-05 59_[+4]_33 chr15:93896404-93896504 4.9e-05 79_[+4]_13 chr16:18166516-18166616 9.4e-05 64_[-4]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTGCWG width=8 seqs=34 chr14:106506795-10650689 ( 39) GGCTGCAG 1 chr16:34334468-34334568 ( 22) GGCTGCAG 1 chr2:77863224-77863324 ( 53) GGCTGCAG 1 chr8:12073559-12073659 ( 91) GGCTGCAG 1 chr14:14985190-14985290 ( 35) GGCTGCAG 1 chr6:31640620-31640720 ( 89) GGCTGCAG 1 chr10:99577224-99577324 ( 36) GGCTGCAG 1 chr3:89688611-89688711 ( 25) GGCTGCAG 1 chr9:28937881-28937981 ( 88) GGCTGCAG 1 chr2:66383663-66383763 ( 2) GGCTGCAG 1 chr13:57796370-57796470 ( 78) GGCTGCTG 1 chr17:65015650-65015750 ( 82) GGCTGCTG 1 chr1:50323982-50324082 ( 33) GGCTGCTG 1 chr15:25372997-25373097 ( 52) GGCTGCTG 1 chr16:49965570-49965670 ( 16) GGCTGCTG 1 chr6:37242348-37242448 ( 26) GGCTGCTG 1 chr4:120188480-120188580 ( 70) GGCTGCTG 1 chr6:78078872-78078972 ( 34) GGCTGCTG 1 chr16:97438236-97438336 ( 58) GGCTGCTG 1 chr19:25713344-25713444 ( 18) GGCGGCAG 1 chr12:107972510-10797261 ( 45) GGCGGCAG 1 chr8:117209089-117209189 ( 49) GGCGGCAG 1 chr9:72205919-72206019 ( 22) GGCGGCAG 1 chr3:154806572-154806672 ( 88) GGCGGCAG 1 chr16:7212672-7212772 ( 38) GGCGGCAG 1 chr6:39527842-39527942 ( 6) GGCGGCAG 1 chr6:12077343-12077443 ( 35) GGCTGCGG 1 chr2:102273246-102273346 ( 89) GGCTGCGG 1 chr12:72976668-72976768 ( 12) GGCTGCGG 1 chr7:125933398-125933498 ( 18) GGCTGCGG 1 chr8:47872303-47872403 ( 52) GGCGGCTG 1 chr16:41903652-41903752 ( 60) GGCTGCCG 1 chr15:93896404-93896504 ( 80) GGCTGCCG 1 chr16:18166516-18166616 ( 65) GGCGGTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 12.6974 E= 2.1e+004 -1173 -1173 217 -1173 -1173 -1173 217 -1173 -1173 217 -1173 -1173 -1173 -1173 25 141 -1173 -1173 217 -1173 -1173 212 -1173 -323 93 -192 -92 9 -1173 -1173 217 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 2.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.264706 0.735294 0.000000 0.000000 1.000000 0.000000 0.000000 0.970588 0.000000 0.029412 0.529412 0.058824 0.117647 0.294118 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGCWG MEME-4 regular expression -------------------------------------------------------------------------------- GGC[TG]GC[AT]G -------------------------------------------------------------------------------- Time 1260.53 secs. ******************************************************************************** ******************************************************************************** MOTIF AATATAACGCTCCTAAAAAAGGGGACGGGT MEME-5 width = 30 sites = 2 llr = 83 E-value = 6.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATATAACGCTCCTAAAAAAGGGGACGGGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa:a:aa:::::::aaaaaa::::a::::: pos.-specific C :::::::a:a:aa::::::::::::a:::: probability G ::::::::a:::::::::::aaaa::aaa: matrix T ::a:a:::::a::a:::::::::::::::a bits 2.2 *** ** **** **** 1.9 ****************************** 1.7 ****************************** 1.5 ****************************** Relative 1.3 ****************************** Entropy 1.1 ****************************** (59.6 bits) 0.9 ****************************** 0.6 ****************************** 0.4 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel AATATAACGCTCCTAAAAAAGGGGACGGGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATAACGCTCCTAAAAAAGGGGACGGGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:95354339-95354439 + 15 1.12e-18 tcctaggcga aatataacgctcctaaaaaaggggacgggt ttccgccatt chr1:8410610-8410710 + 61 1.12e-18 tcctaggcga aatataacgctcctaaaaaaggggacgggt ttccgccatt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATAACGCTCCTAAAAAAGGGGACGGGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:95354339-95354439 1.1e-18 14_[+5]_56 chr1:8410610-8410710 1.1e-18 60_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATAACGCTCCTAAAAAAGGGGACGGGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATATAACGCTCCTAAAAAAGGGGACGGGT width=30 seqs=2 chrX:95354339-95354439 ( 15) AATATAACGCTCCTAAAAAAGGGGACGGGT 1 chr1:8410610-8410710 ( 61) AATATAACGCTCCTAAAAAAGGGGACGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATAACGCTCCTAAAAAAGGGGACGGGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 14.3785 E= 6.8e+005 185 -765 -765 -765 185 -765 -765 -765 -765 -765 -765 185 185 -765 -765 -765 -765 -765 -765 185 185 -765 -765 -765 185 -765 -765 -765 -765 216 -765 -765 -765 -765 216 -765 -765 216 -765 -765 -765 -765 -765 185 -765 216 -765 -765 -765 216 -765 -765 -765 -765 -765 185 185 -765 -765 -765 185 -765 -765 -765 185 -765 -765 -765 185 -765 -765 -765 185 -765 -765 -765 185 -765 -765 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 185 -765 -765 -765 -765 216 -765 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 -765 185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATAACGCTCCTAAAAAAGGGGACGGGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 2 E= 6.8e+005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATAACGCTCCTAAAAAAGGGGACGGGT MEME-5 regular expression -------------------------------------------------------------------------------- AATATAACGCTCCTAAAAAAGGGGACGGGT -------------------------------------------------------------------------------- Time 1562.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCAGCGTG MEME-6 width = 11 sites = 2 llr = 32 E-value = 8.4e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAGCGTG MEME-6 Description -------------------------------------------------------------------------------- Simplified A :::::a::::: pos.-specific C :a:aa::a::: probability G a:a:::a:a:a matrix T :::::::::a: bits 2.2 ***** *** * 1.9 *********** 1.7 *********** 1.5 *********** Relative 1.3 *********** Entropy 1.1 *********** (23.2 bits) 0.9 *********** 0.6 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GCGCCAGCGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAGCGTG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr11:90355569-90355669 + 49 1.05e-07 ACAGCACTGA GCGCCAGCGTG AGTTGCGCTT chr14:48207121-48207221 + 69 1.05e-07 GGCAGCGCCA GCGCCAGCGTG ACTGCAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAGCGTG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:90355569-90355669 1e-07 48_[+6]_41 chr14:48207121-48207221 1e-07 68_[+6]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAGCGTG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAGCGTG width=11 seqs=2 chr11:90355569-90355669 ( 49) GCGCCAGCGTG 1 chr14:48207121-48207221 ( 69) GCGCCAGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAGCGTG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 14.7206 E= 8.4e+006 -765 -765 216 -765 -765 216 -765 -765 -765 -765 216 -765 -765 216 -765 -765 -765 216 -765 -765 185 -765 -765 -765 -765 -765 216 -765 -765 216 -765 -765 -765 -765 216 -765 -765 -765 -765 185 -765 -765 216 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAGCGTG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 2 E= 8.4e+006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAGCGTG MEME-6 regular expression -------------------------------------------------------------------------------- GCGCCAGCGTG -------------------------------------------------------------------------------- Time 1865.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGGG MEME-7 width = 7 sites = 2 llr = 21 E-value = 2.3e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGGG MEME-7 Description -------------------------------------------------------------------------------- Simplified A ::::::: pos.-specific C :a::::: probability G a:aaaaa matrix T ::::::: bits 2.2 ******* 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (15.2 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******* 0.0 ------- Multilevel GCGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGG MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------- chr3:57136748-57136848 - 12 2.74e-05 GCGGCTGACA GCGGGGG AGGAGCCGGG chr12:106310982-10631108 + 22 2.74e-05 GAGCTTGGGC GCGGGGG CGCAAGCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGG MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:57136748-57136848 2.7e-05 11_[-7]_82 chr12:106310982-10631108 2.7e-05 21_[+7]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGG MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGGG width=7 seqs=2 chr3:57136748-57136848 ( 12) GCGGGGG 1 chr12:106310982-10631108 ( 22) GCGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGG MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 7 n= 56400 bayes= 11.0823 E= 2.3e+007 -765 -765 216 -765 -765 216 -765 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 -765 -765 216 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGG MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 7 nsites= 2 E= 2.3e+007 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGG MEME-7 regular expression -------------------------------------------------------------------------------- GCGGGGG -------------------------------------------------------------------------------- Time 2170.69 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAKGCWGGSAYGGRGAGKAGMGMAGGC MEME-8 width = 28 sites = 2 llr = 69 E-value = 2.6e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAKGCWGGSAYGGRGAGKAGMGMAGGC MEME-8 Description -------------------------------------------------------------------------------- Simplified A a:a:::5:::a:::5:a::a:5:5a::: pos.-specific C :::::a:::5:5:::::::::5:5:::a probability G :a:5a::aa5::aa5a:a5:a:a::aa: matrix T :::5::5::::5::::::5::::::::: bits 2.2 * ** ** ** * * * * *** 1.9 *** ** ** * ** *** ** * **** 1.7 *** ** ** * ** *** ** * **** 1.5 *** ** ** * ** *** ** * **** Relative 1.3 *** ** ** * ** *** ** * **** Entropy 1.1 ****** ********************* (49.5 bits) 0.9 **************************** 0.6 **************************** 0.4 **************************** 0.2 **************************** 0.0 ---------------------------- Multilevel AGAGGCAGGCACGGAGAGGAGAGAAGGC consensus T T G T G T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGCWGGSAYGGRGAGKAGMGMAGGC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chr15:73019879-73019979 - 70 7.22e-16 AAC AGATGCAGGCACGGAGAGTAGCGCAGGC GCACTGCAGA chr16:22490098-22490198 + 68 7.22e-16 TTGCTCAGGA AGAGGCTGGGATGGGGAGGAGAGAAGGC AGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGCWGGSAYGGRGAGKAGMGMAGGC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:73019879-73019979 7.2e-16 69_[-8]_3 chr16:22490098-22490198 7.2e-16 67_[+8]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGCWGGSAYGGRGAGKAGMGMAGGC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAKGCWGGSAYGGRGAGKAGMGMAGGC width=28 seqs=2 chr15:73019879-73019979 ( 70) AGATGCAGGCACGGAGAGTAGCGCAGGC 1 chr16:22490098-22490198 ( 68) AGAGGCTGGGATGGGGAGGAGAGAAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGCWGGSAYGGRGAGKAGMGMAGGC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 13.5705 E= 2.6e+007 185 -765 -765 -765 -765 -765 216 -765 185 -765 -765 -765 -765 -765 116 85 -765 -765 216 -765 -765 216 -765 -765 85 -765 -765 85 -765 -765 216 -765 -765 -765 216 -765 -765 116 116 -765 185 -765 -765 -765 -765 116 -765 85 -765 -765 216 -765 -765 -765 216 -765 85 -765 116 -765 -765 -765 216 -765 185 -765 -765 -765 -765 -765 216 -765 -765 -765 116 85 185 -765 -765 -765 -765 -765 216 -765 85 116 -765 -765 -765 -765 216 -765 85 116 -765 -765 185 -765 -765 -765 -765 -765 216 -765 -765 -765 216 -765 -765 216 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGCWGGSAYGGRGAGKAGMGMAGGC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 2 E= 2.6e+007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAKGCWGGSAYGGRGAGKAGMGMAGGC MEME-8 regular expression -------------------------------------------------------------------------------- AGA[GT]GC[AT]GG[CG]A[CT]GG[AG]GAG[GT]AG[AC]G[AC]AGGC -------------------------------------------------------------------------------- Time 2462.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGCGC MEME-9 width = 8 sites = 2 llr = 24 E-value = 2.4e+007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGCGC MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a:a:a probability G ::a:a:a: matrix T :a:::::: bits 2.2 * ****** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGCGC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chrX:95354339-95354439 + 80 7.60e-06 ctctctggct ctgcgcgc cctgcgctcg chr12:56058394-56058494 + 37 7.60e-06 CAAGTCTCAG CTGCGCGC TAAGCGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGCGC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:95354339-95354439 7.6e-06 79_[+9]_13 chr12:56058394-56058494 7.6e-06 36_[+9]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGCGC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGCGC width=8 seqs=2 chrX:95354339-95354439 ( 80) CTGCGCGC 1 chr12:56058394-56058494 ( 37) CTGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGCGC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 12.0452 E= 2.4e+007 -765 216 -765 -765 -765 -765 -765 185 -765 -765 216 -765 -765 216 -765 -765 -765 -765 216 -765 -765 216 -765 -765 -765 -765 216 -765 -765 216 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGCGC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGCGC MEME-9 regular expression -------------------------------------------------------------------------------- CTGCGCGC -------------------------------------------------------------------------------- Time 2752.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGGTGABGGSSGTG MEME-10 width = 15 sites = 7 llr = 110 E-value = 4.5e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGGTGABGGSSGTG MEME-10 Description -------------------------------------------------------------------------------- Simplified A :7::::7::::::1: pos.-specific C ::::11:3::44::: probability G a1aa:9:49a64a:a matrix T :1::9:331::1:9: bits 2.2 * ** * * * 1.9 * ** * * * 1.7 * ** * * * 1.5 * ** * ** * * Relative 1.3 * **** ** *** Entropy 1.1 * ***** *** *** (22.8 bits) 0.9 * ***** *** *** 0.6 ******* ******* 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GAGGTGAGGGGCGTG consensus TC CG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTGABGGSSGTG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr5:52323416-52323516 + 54 3.39e-09 CAGCCAAGTG GAGGTGATGGGGGTG TCTCAGAAGA chr3:97733337-97733437 - 83 1.36e-08 ACT GAGGTGACGGGTGTG TGCCACCAGG chr3:102337851-102337951 - 61 3.52e-08 CACACTTACG GAGGTGAGTGCCGTG ACAGCTCATG chr13:59059053-59059153 - 45 3.76e-08 AGCAGTGGCA GAGGCGTGGGGCGTG TCCCAGTCCA chr15:38365273-38365373 - 31 4.15e-08 GGTGAAGGAG GTGGTGATGGCGGTG GTAAGCCAGC chr5:62098843-62098943 - 82 6.97e-08 TGGG GGGGTGAGGGGCGAG TAATGGAGAT chr5:33492887-33492987 + 28 8.70e-08 ttactgcgca gaGGTCTCGGCGGTG GCTCAGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTGABGGSSGTG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:52323416-52323516 3.4e-09 53_[+10]_32 chr3:97733337-97733437 1.4e-08 82_[-10]_3 chr3:102337851-102337951 3.5e-08 60_[-10]_25 chr13:59059053-59059153 3.8e-08 44_[-10]_41 chr15:38365273-38365373 4.2e-08 30_[-10]_55 chr5:62098843-62098943 7e-08 81_[-10]_4 chr5:33492887-33492987 8.7e-08 27_[+10]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTGABGGSSGTG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGGTGABGGSSGTG width=15 seqs=7 chr5:52323416-52323516 ( 54) GAGGTGATGGGGGTG 1 chr3:97733337-97733437 ( 83) GAGGTGACGGGTGTG 1 chr3:102337851-102337951 ( 61) GAGGTGAGTGCCGTG 1 chr13:59059053-59059153 ( 45) GAGGCGTGGGGCGTG 1 chr15:38365273-38365373 ( 31) GTGGTGATGGCGGTG 1 chr5:62098843-62098943 ( 82) GGGGTGAGGGGCGAG 1 chr5:33492887-33492987 ( 28) GAGGTCTCGGCGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTGABGGSSGTG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 14.07 E= 4.5e+006 -945 -945 216 -945 136 -945 -64 -95 -945 -945 216 -945 -945 -945 216 -945 -945 -64 -945 163 -945 -64 194 -945 136 -945 -945 4 -945 36 94 4 -945 -945 194 -95 -945 -945 216 -945 -945 94 136 -945 -945 94 94 -95 -945 -945 216 -945 -95 -945 -945 163 -945 -945 216 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTGABGGSSGTG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 7 E= 4.5e+006 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.142857 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.142857 0.857143 0.000000 0.714286 0.000000 0.000000 0.285714 0.000000 0.285714 0.428571 0.285714 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.428571 0.428571 0.142857 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTGABGGSSGTG MEME-10 regular expression -------------------------------------------------------------------------------- GAGGTG[AT][GCT]GG[GC][CG]GTG -------------------------------------------------------------------------------- Time 3039.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:106349894-106349994 6.13e-01 100 chr17:64139201-64139301 4.23e-01 100 chr6:118885534-118885634 1.87e-02 35_[+1(5.41e-05)]_44 chr14:114249955-11425005 9.54e-01 100 chr2:67818005-67818105 6.44e-01 100 chr1:8410610-8410710 1.26e-11 25_[-4(7.32e-05)]_27_[+5(1.12e-18)]_\ 10 chr12:16853449-16853549 1.34e-05 57_[+3(2.18e-06)]_24 chrX:100679293-100679393 8.56e-01 100 chr5:48705824-48705924 9.99e-01 100 chr15:48132019-48132119 7.49e-01 4_[-3(9.84e-05)]_77 chr15:27094967-27095067 8.13e-01 100 chr2:90825465-90825565 8.88e-02 100 chr10:119706203-11970630 4.06e-01 59_[-2(2.28e-05)]_8_[-2(1.00e-05)]_\ 11 chr1:166297854-166297954 2.60e-04 35_[-3(3.53e-06)]_46 chr9:52762755-52762855 4.55e-02 65_[+10(3.48e-05)]_20 chr11:45452882-45452982 9.77e-01 100 chr2:117099313-117099413 5.68e-01 100 chr12:89020705-89020805 1.71e-01 23_[+1(5.52e-06)]_56 chr6:52932726-52932826 1.60e-02 63_[-10(7.28e-05)]_22 chr11:20357053-20357153 3.36e-03 49_[+2(9.11e-06)]_40 chr3:34573239-34573339 1.92e-01 100 chr12:74516487-74516587 1.63e-02 24_[+3(2.56e-05)]_57 chr1:22368267-22368367 4.04e-03 100 chr2:91335023-91335123 2.19e-01 47_[+8(6.30e-05)]_25 chr9:14173811-14173911 9.72e-01 100 chr14:121122632-12112273 4.68e-03 5_[+2(1.51e-06)]_84 chr8:32215048-32215148 6.21e-01 100 chr2:138195874-138195974 9.92e-01 100 chr15:95931276-95931376 8.40e-01 100 chr8:51447620-51447720 5.03e-01 100 chr4:57607488-57607588 1.61e-03 79_[+1(1.74e-07)] chr12:116551567-11655166 3.41e-02 36_[+2(2.59e-05)]_53 chr9:91652375-91652475 5.14e-02 9_[-2(2.89e-05)]_80 chr1:32633341-32633441 8.29e-01 100 chr10:74414055-74414155 9.18e-01 100 chr8:14149488-14149588 2.18e-01 100 chr10:91887645-91887745 7.51e-01 100 chr5:49639631-49639731 9.54e-01 100 chr14:21553953-21554053 7.76e-05 76_[+3(2.01e-09)]_5 chr3:102337851-102337951 2.54e-03 60_[-10(3.52e-08)]_25 chr16:77237811-77237911 9.84e-01 100 chr18:60990322-60990422 5.59e-03 76_[+2(5.21e-05)]_13 chr14:64574376-64574476 2.99e-01 42_[+2(4.62e-05)]_1_[+2(5.86e-05)]_\ 1_[+2(5.86e-05)]_23 chr16:97438236-97438336 6.26e-02 57_[-4(1.89e-05)]_35 chr3:136995893-136995993 6.66e-01 100 chr4:77675667-77675767 8.86e-01 100 chr5:118676477-118676577 2.00e-02 22_[-2(9.68e-05)]_67 chr6:72164819-72164919 7.26e-02 52_[+1(7.43e-07)]_27 chr14:73712380-73712480 1.69e-03 67_[+1(2.14e-06)]_12 chrX:41587676-41587776 3.25e-01 100 chr4:17644949-17645049 5.43e-01 100 chr11:42259617-42259717 7.15e-01 100 chr7:125933398-125933498 4.04e-02 17_[-4(3.41e-05)]_75 chr4:65532380-65532480 1.00e+00 100 chr15:68739197-68739297 9.90e-01 100 chr2:66383663-66383763 2.61e-07 1_[+4(9.44e-06)]_10_[-3(5.54e-09)]_\ 31_[+4(9.44e-06)]_23 chr18:16725019-16725119 5.01e-02 [+3(7.42e-05)]_81 chr13:91362924-91363024 2.96e-01 100 chr9:28937881-28937981 3.60e-03 87_[-4(9.44e-06)]_5 chr13:57841111-57841211 6.29e-01 100 chr2:6748808-6748908 5.27e-01 100 chr3:105004120-105004220 1.25e-05 49_[+1(1.76e-05)]_1_[-6(6.75e-05)]_\ 18 chr2:77682670-77682770 7.32e-01 100 chr18:75231742-75231842 3.20e-05 40_[-2(2.94e-06)]_49 chr12:56058394-56058494 1.13e-07 23_[-3(3.92e-06)]_26_[-1(3.13e-08)]_\ 11 chr10:20290308-20290408 7.18e-06 36_[-1(6.62e-08)]_43 chr13:103306717-10330681 4.45e-01 100 chr4:82090766-82090866 5.00e-02 100 chr5:73233518-73233618 1.92e-02 39_[-3(1.94e-05)]_42 chr3:157017483-157017583 9.94e-01 100 chr2:173342730-173342830 3.03e-06 41_[-3(7.73e-10)]_40 chr15:67357721-67357821 5.73e-01 100 chr18:78819561-78819661 2.15e-02 18_[+2(5.86e-05)]_71 chr2:41535733-41535833 8.84e-01 100 chr3:136022723-136022823 1.61e-01 100 chr9:27999408-27999508 4.06e-03 12_[+2(1.99e-05)]_25_[-1(7.17e-06)]_\ 31 chr12:35123326-35123426 9.88e-01 100 chr2:137616613-137616713 2.22e-01 26_[-2(5.86e-05)]_63 chr10:9245053-9245153 9.86e-01 100 chr2:77756513-77756613 2.23e-01 100 chr13:79044711-79044811 1.00e+00 100 chr9:61791348-61791448 1.58e-01 100 chr12:117291209-11729130 4.45e-01 100 chr6:39527842-39527942 1.17e-01 5_[-4(2.65e-05)]_87 chr14:120130951-12013105 3.04e-02 52_[-8(1.02e-06)]_20 chr2:117717605-117717705 3.28e-01 100 chr9:42678012-42678112 9.99e-01 100 chr3:89688611-89688711 2.77e-07 22_[+4(9.44e-06)]_8_[+1(1.16e-07)]_\ 9_[+6(8.99e-05)]_21 chr8:65644895-65644995 9.48e-01 100 chr15:53785355-53785455 3.44e-03 15_[+1(3.27e-07)]_64 chr13:29568710-29568810 2.41e-02 60_[+8(2.78e-06)]_12 chr18:40353303-40353403 4.95e-01 100 chr8:92984259-92984359 1.71e-01 100 chr14:99901813-99901913 3.32e-02 21_[-3(4.98e-05)]_60 chr6:103825999-103826099 9.97e-01 100 chr14:64289388-64289488 1.27e-01 100 chr9:23252172-23252272 4.46e-03 5_[+2(5.11e-06)]_84 chr2:138085251-138085351 2.09e-04 51_[+10(4.92e-05)]_5_[+3(9.80e-06)]_\ 10 chrX:75978567-75978667 9.32e-01 100 chr15:91369692-91369792 8.19e-03 87_[-2(2.28e-05)]_2 chr12:38931696-38931796 3.21e-01 100 chr2:18766935-18767035 1.07e-01 43_[-8(6.30e-05)]_29 chr9:86371235-86371335 1.00e-01 100 chr3:116327136-116327236 1.25e-03 63_[+1(2.74e-05)]_16 chr2:72365966-72366066 8.77e-02 100 chrX:19715341-19715441 7.27e-01 100 chr15:27729731-27729831 6.91e-01 100 chrX:165894665-165894765 9.97e-01 100 chr3:115016722-115016822 5.35e-01 100 chr6:78078872-78078972 2.54e-02 33_[-4(1.89e-05)]_59 chr3:133993908-133994008 9.52e-02 51_[-8(7.88e-06)]_21 chr10:4849827-4849927 3.19e-02 44_[+2(1.08e-05)]_45 chr12:8411047-8411147 1.24e-02 100 chr12:72976668-72976768 8.00e-02 11_[-4(3.41e-05)]_12_[+1(9.96e-05)]_\ 48 chr10:85458905-85459005 1.57e-03 79_[+1(1.09e-05)] chrX:167749122-167749222 1.34e-01 100 chr7:75664344-75664444 9.83e-01 100 chr3:56698095-56698195 8.34e-02 9_[-8(8.62e-05)]_63 chr1:169842480-169842580 6.19e-01 100 chr7:35823849-35823949 1.65e-02 56_[-1(1.94e-06)]_23 chr13:118313622-11831372 4.68e-02 49_[+2(1.21e-06)]_40 chr4:82401093-82401193 1.48e-02 100 chr15:25913480-25913580 4.30e-03 100 chrX:164308581-164308681 2.56e-01 62_[-8(4.85e-05)]_10 chr11:24699079-24699179 9.30e-01 100 chr13:51957021-51957121 7.95e-01 100 chr8:73213339-73213439 1.23e-02 39_[-4(7.32e-05)]_53 chr4:104455070-104455170 7.13e-01 10_[-8(1.97e-05)]_62 chr8:17447521-17447621 7.00e-01 100 chr16:87793518-87793618 8.11e-01 100 chr13:71105167-71105267 2.89e-04 35_[-1(5.93e-07)]_44 chr16:49635367-49635467 9.26e-01 100 chr2:102273246-102273346 4.04e-03 73_[-3(2.45e-05)]_8 chr2:6471215-6471315 7.04e-02 100 chrX:19919828-19919928 1.62e-01 15_[-2(3.06e-05)]_74 chr4:76786774-76786874 9.61e-01 100 chr5:77803464-77803564 6.91e-03 66_[-1(3.69e-07)]_13 chr1:22211162-22211262 1.49e-02 15_[+2(2.42e-06)]_74 chr13:29283146-29283246 8.31e-02 100 chr18:53316820-53316920 1.07e-02 45_[+2(7.21e-05)]_44 chr18:25590692-25590792 1.18e-01 100 chr10:53519077-53519177 9.99e-01 100 chr18:60888597-60888697 6.86e-03 54_[-3(1.34e-05)]_27 chr7:92316301-92316401 1.13e-02 18_[-3(3.20e-05)]_23_[+8(5.70e-05)]_\ 12 chr16:22490098-22490198 3.76e-10 67_[+8(7.22e-16)]_5 chr4:57673236-57673336 4.76e-05 12_[-1(4.27e-08)]_67 chr12:102252049-10225214 6.80e-01 100 chr16:51916717-51916817 8.09e-01 100 chr17:42427910-42428010 4.13e-01 100 chr14:23694394-23694494 3.04e-01 77_[-10(1.89e-05)]_8 chr4:123621606-123621706 4.10e-02 71_[+8(7.18e-06)]_1 chr13:113440060-11344016 9.99e-01 100 chr4:13399189-13399289 1.81e-02 1_[+6(6.75e-05)]_88 chr3:35341017-35341117 1.01e-07 28_[+3(2.31e-11)]_53 chr14:72338008-72338108 7.13e-01 100 chr10:4670902-4671002 9.84e-01 100 chr12:107096984-10709708 2.15e-02 64_[+2(9.11e-06)]_25 chr15:28460959-28461059 1.49e-01 20_[-8(4.85e-05)]_52 chr9:28607988-28608088 9.69e-01 100 chr2:8370599-8370699 9.50e-01 100 chr13:119062679-11906277 1.00e+00 100 chr3:105275784-105275884 5.25e-01 100 chr10:99577224-99577324 3.82e-05 13_[+1(5.93e-07)]_1_[+4(9.44e-06)]_\ 57 chr11:105828092-10582819 9.99e-01 100 chr3:23063121-23063221 1.02e-02 35_[-1(2.66e-08)]_44 chr19:34662192-34662292 7.41e-01 100 chr2:174156709-174156809 7.17e-01 100 chr14:10047091-10047191 3.52e-01 100 chr15:93896404-93896504 3.55e-01 79_[+4(4.93e-05)]_13 chr6:31317906-31318006 3.34e-02 11_[+8(8.62e-05)]_61 chr15:27949457-27949557 2.90e-01 100 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chr1:18058184-18058284 6.35e-09 25_[-6(8.99e-05)]_35_[-3(3.35e-09)]_\ 10 chr1:26909888-26909988 9.69e-02 78_[-2(9.11e-06)]_11 chr17:10390806-10390906 3.29e-01 100 chr9:96822932-96823032 5.71e-01 38_[+2(5.21e-05)]_51 chr13:20546476-20546576 1.31e-03 24_[-8(2.84e-05)]_48 chr13:51523233-51523333 4.41e-01 100 chr18:62109996-62110096 9.97e-01 100 chr18:5146857-5146957 2.38e-01 43_[-1(4.75e-05)]_36 chr4:75963287-75963387 4.32e-01 100 chr15:53131292-53131392 6.94e-01 100 chr1:102944644-102944744 8.31e-01 100 chr19:25713344-25713444 7.29e-09 18_[-3(2.11e-05)]_[-1(3.17e-06)]_6_\ [-8(2.06e-05)]_8 chr15:30706535-30706635 2.07e-01 100 chr13:23270257-23270357 3.11e-01 29_[+9(2.74e-05)]_63 chr13:54312693-54312793 4.26e-01 100 chr10:111784326-11178442 6.24e-01 100 chr15:31921379-31921479 4.39e-01 100 chr1:132928422-132928522 5.52e-09 16_[-3(3.95e-10)]_65 chr13:54855842-54855942 5.25e-02 74_[+2(3.29e-05)]_15 chr5:140803794-140803894 3.60e-01 100 chr2:102228372-102228472 3.81e-03 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******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-40.local ********************************************************************************