******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.PT_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:94183806-94183906 1.0000 100 chr17:67175733-67175833 1.0000 100 chr6:98769892-98769992 1.0000 100 chr14:87554871-87554971 1.0000 100 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chr12:100274560-10027466 1.0000 100 chr5:38372251-38372351 1.0000 100 chr5:41942084-41942184 1.0000 100 chr13:101024949-10102504 1.0000 100 chr9:31559477-31559577 1.0000 100 chr10:14196767-14196867 1.0000 100 chr4:101692853-101692953 1.0000 100 chr17:88103216-88103316 1.0000 100 chr4:66531808-66531908 1.0000 100 chr17:80809223-80809323 1.0000 100 chr12:40509737-40509837 1.0000 100 chr4:68014237-68014337 1.0000 100 chr1:149469654-149469754 1.0000 100 chr17:90147491-90147591 1.0000 100 chr5:51794918-51795018 1.0000 100 chr1:120425518-120425618 1.0000 100 chr1:146792759-146792859 1.0000 100 chr13:43208983-43209083 1.0000 100 chr16:11778085-11778185 1.0000 100 chr15:66174658-66174758 1.0000 100 chr1:117521077-117521177 1.0000 100 chr18:84497866-84497966 1.0000 100 chr11:6999285-6999385 1.0000 100 chr4:46771150-46771250 1.0000 100 chr16:62729716-62729816 1.0000 100 chr7:68858376-68858476 1.0000 100 chr5:26680992-26681092 1.0000 100 chr18:41241176-41241276 1.0000 100 chr12:88841513-88841613 1.0000 100 chr5:13924844-13924944 1.0000 100 chr18:38059250-38059350 1.0000 100 chr18:70028755-70028855 1.0000 100 chr5:77530358-77530458 1.0000 100 chr4:66183791-66183891 1.0000 100 chr11:113110893-11311099 1.0000 100 chr1:141968150-141968250 1.0000 100 chr18:45646011-45646111 1.0000 100 chr15:55694257-55694357 1.0000 100 chr4:25221821-25221921 1.0000 100 chr7:117887291-117887391 1.0000 100 chr4:98628127-98628227 1.0000 100 chr9:36941983-36942083 1.0000 100 chr11:90455533-90455633 1.0000 100 chrX:131918561-131918661 1.0000 100 chr12:8452946-8453046 1.0000 100 chr19:47484924-47485024 1.0000 100 chr8:88064708-88064808 1.0000 100 chr4:91021042-91021142 1.0000 100 chr1:32988125-32988225 1.0000 100 chr17:8763033-8763133 1.0000 100 chr9:86010192-86010292 1.0000 100 chr13:4656525-4656625 1.0000 100 chr13:36153125-36153225 1.0000 100 chr18:66780288-66780388 1.0000 100 chr18:13264786-13264886 1.0000 100 chr4:38031255-38031355 1.0000 100 chr15:36425890-36425990 1.0000 100 chr1:97622469-97622569 1.0000 100 chr19:31114592-31114692 1.0000 100 chr15:10381830-10381930 1.0000 100 chr13:6120817-6120917 1.0000 100 chr13:42603404-42603504 1.0000 100 chr10:97313545-97313645 1.0000 100 chr15:13059452-13059552 1.0000 100 chr1:28897504-28897604 1.0000 100 chr13:42760856-42760956 1.0000 100 chr5:101365305-101365405 1.0000 100 chr2:104305631-104305731 1.0000 100 chr12:31773546-31773646 1.0000 100 chr5:124162536-124162636 1.0000 100 chr11:47481386-47481486 1.0000 100 chr5:29004661-29004761 1.0000 100 chr5:18086986-18087086 1.0000 100 chr18:75562729-75562829 1.0000 100 chr17:47152312-47152412 1.0000 100 chr6:77578794-77578894 1.0000 100 chr15:26160372-26160472 1.0000 100 chr6:85218756-85218856 1.0000 100 chr16:29331268-29331368 1.0000 100 chr11:81065392-81065492 1.0000 100 chr11:10562749-10562849 1.0000 100 chr11:46190071-46190171 1.0000 100 chr3:65585426-65585526 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.PT_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.PT_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.PT_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.PT_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.277 C 0.223 G 0.223 T 0.277 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.PT_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.286 C 0.214 G 0.214 T 0.286 ******************************************************************************** ******************************************************************************** MOTIF CCCTSCCWSCSHYCCCCDCHS MEME-1 width = 21 sites = 78 llr = 795 E-value = 1.9e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTSCCWSCSHYCCCCDCHS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::11:13:2222112:3:2: pos.-specific C 57926792655445667:725 probability G 211232:14:31121:13313 matrix T 12:5:1:4:2:3312124:42 bits 2.2 2.0 1.8 * * 1.6 * * Relative 1.3 * * * * Entropy 1.1 * *** * * (14.7 bits) 0.9 ** *** * * * 0.7 ** *** * * ** * * 0.4 *** *** *** ****** * 0.2 ******* *********** * 0.0 --------------------- Multilevel CCCTCCCTCCCCCCCCCTCTC consensus GT GG AGAGTTGTA GGCG sequence T A A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTSCCWSCSHYCCCCDCHS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr13:10019047-10019147 - 1 9.21e-12 TTGCTCTCTT CCCTCCCTCCCCCCTCCTCTC chr18:70028755-70028855 + 74 4.19e-11 ctccctccct ccctccctccctcctcctctc cctttg chr15:95022589-95022689 - 79 2.08e-09 C TCCCCCCTCCCCTCCCCTCTC TCCTCCTCCC chr2:135029150-135029250 + 31 8.44e-09 ctctctctct ctctccctgcctccctctctc tccctcccct chr10:45446068-45446168 - 54 1.47e-08 CTTCTCTCCA CCCTCCACCCCACCCCCACAC TTAACAACGC chr16:44633030-44633130 - 1 2.99e-08 AAAGCACCCT ACCCCCCCCCACCCCCCACCC chr17:66478233-66478333 - 75 3.55e-08 TGAGG GCCTGCCAGCGACACCCGCTC TCTGGGTAGA chr13:37680913-37681013 - 31 5.86e-08 TCTACCTCCA CCCTGCCTCACCCCACCTCTT CACTCCTCCT chr15:68739788-68739888 + 58 6.89e-08 GTTGCCACAA CCCTCCCCGTCACCACCACAC ATACATGCAT chr3:104431103-104431203 + 79 9.48e-08 TCTCCTTCCT ACCTCCCACAGACGCCCACCC A chr5:18086986-18087086 - 47 1.75e-07 GTGTAGCATA CCCACCCACCCTCACACACAC GCACACACAC chr4:85054907-85055007 + 71 2.36e-07 caaaatcctg atccccctgcctcctcctccc aagtgttca chr18:41241176-41241276 - 27 3.14e-07 CTCAGCTCCA GCCGCCCACAGCTCTCCTCAG AGAAAAACCC chr13:95086034-95086134 - 32 4.17e-07 CCAGCCTCTC CCCGGCCCCACACCCACACTT TCTGCTGCTT chr16:94931943-94932043 - 13 4.79e-07 GCGAGCCTGC TCCACCCTCCCACCTCCTGCC AAGCTCGGAA chr3:127107323-127107423 + 35 6.28e-07 AAAGCTGTGC CCCTGGCAGACACCCCGAGTC CATCTGCAAT chr4:28298889-28298989 - 65 9.33e-07 GAAACGATTT CCCTCCCACTACCATCTGCTG TGGAACACAC chr10:119065363-11906546 + 65 1.06e-06 ACCTCGTATG CTCTCCCTCCCGTCCTCGGGG GAGGCGGAGA chr6:31160197-31160297 - 65 1.21e-06 GCACCGACCA ACCGCCCGCCCGCCCACAGTG GAGAGCTCCC chr11:51085164-51085264 - 34 1.21e-06 TTGCACTGCA GTCTCCCAGCCTTGGCCACAG GAAAGACTGT chrX:12494361-12494461 - 31 1.37e-06 GAAGCATTGC ACCTCCCACTGTACCCCTGAG CTGCTGGACT chr9:49989793-49989893 - 69 1.37e-06 CCATGCCCAC CGCTGGCCCACTTCTCCGCTG TCTCATGCAC chrX:98506360-98506460 - 4 1.55e-06 TTGTTTAACC CCCCACCCCCCGTCCCTTCTC GCT chr3:88200923-88201023 - 42 2.51e-06 GAGCCTGGCT CTCTCGCTCGCTCGCTCGCTC TACCCCAGAC chr6:112879939-112880039 + 68 2.51e-06 CCCAGCACAG CCCCCGCAGCCCCTCCAGCTG TGCCCAGAGC chr18:45993437-45993537 + 72 2.51e-06 ctgcttgagc tcctgccaccagactcctctg ccatgttg chr1:151998724-151998824 - 49 2.82e-06 TGGCTTCAAA GCCTGGCTGAGCTCCTCACAC ACAGATACAT chr6:89552490-89552590 + 29 3.17e-06 TAGCTGAGTT CCCTCCATGTCTTCTCCGGGC CTTGAAAAAA chr5:92456291-92456391 + 62 3.17e-06 TAAATAGAAA TTCTCCCAGCCTCAGCCGCAG ATGGTACTCT chr16:89757375-89757475 + 20 3.98e-06 TTTTCAACTG CCCTGCCAGACAGACACGGTC ATTTCCATAT chr4:103536312-103536412 - 40 4.45e-06 CTACCTGCAT GGCAGGCAGCCACCCCCAGTG GGATTGGCAT chr9:76881820-76881920 - 76 4.45e-06 GCTT CCCCCCACCCCAAGCTCGCTG CTTTGTTTAG chr2:58419519-58419619 - 38 4.45e-06 TGCAAATTAG CCCTCCCACCACTGAATTCAG TACTGAGTTT chr8:16613879-16613979 + 6 4.97e-06 actct ctctctctctctctccctgtc tctctttctc chr14:118180169-11818026 - 80 4.97e-06 . CCCGCCCAGCGCGCGCTTCCT GGTGGCAGGG chr14:61648585-61648685 - 63 5.55e-06 CAGCTGTGGA GCCGGCCCGCGTTCCCGGCAT GCCCCGGGGC chr18:64856165-64856265 - 59 6.18e-06 CCGACACCAG CCCTCGCTCCCCACGGTTCAC AGCCTAACTA chr5:126733474-126733574 + 56 6.18e-06 TCACAAGCTG GTCTGCCAGCGCCACCTAGTG GGAATATCGG chr8:125133575-125133675 - 39 6.18e-06 CTCCAACACT CCCACCCAGAACTTCCGGCTC GCCTGCAGGC chr5:125245579-125245679 + 56 6.88e-06 AGCTCAGCAG CTCTGCCTCTGCCTTACGCCG TGGGGAGGCT chr5:42171853-42171953 - 36 6.88e-06 CAGGAACTAA GCCACGCGCCACCCACCACAG AACATATACA chr17:72781760-72781860 - 5 6.88e-06 GTAGATTATT ACCTCCCTGCCAACCATGGTT CTCT chr1:119016771-119016871 + 44 1.04e-05 ctgcttcaca ccgcctctgccatgccttctc ctgcacaaca chr3:149385852-149385952 - 27 1.04e-05 TCTATTAATA TCCTCCCTGTAAACCCTGGCC TGCCAAGAGT chr13:44282862-44282962 + 2 1.04e-05 T GCCCCGCTGCAAAGCCCGGGG TTTGTGAGAT chr14:21099315-21099415 + 30 1.04e-05 GGCGGTGTTT TCGTCCCTGTGCTGTCCACCC ACTCCCTCAG chr16:92591226-92591326 + 80 1.15e-05 CAAGCCAAGA GCCTCCCACACTTGATTTCTC chr17:44634459-44634559 + 53 1.15e-05 AGTGATCACA TGGTCCCCCAACTCCCCGCTG GCAATTTCTC chr14:119680065-11968016 - 39 1.15e-05 TGAGAAAAAT CTCTGCATCCCCTACCCACGT GTTGTTAGGA chr18:86238419-86238519 - 48 1.27e-05 CCAGCACCGT GTCTGCCTGCATGCCACTGTG CTTCCTACCA chr6:31159243-31159343 - 26 1.27e-05 ATGGCAGTCC ACGTGGCAGCCTCCCCGGCTT TATGTCCCTG chr16:29839085-29839185 + 14 1.41e-05 AGCTTATCTA AGCGCCCCGCCCCCACTTGCC AGTTGCGGTA chr14:39034375-39034475 - 69 1.41e-05 CTGTGTTGAA GCCTGGAAGCCTACGCCTCAC ACTTCTGTAG chr5:25829801-25829901 + 56 1.41e-05 GTCCTCAGAA CCCTGCCAGTCTAGATCTCAG GGTCCTTAAA chr13:107207838-10720793 - 74 1.55e-05 AAGTGT GCGCGTCTCCACCCCACACTC TGCTGTTGCC chr13:110139203-11013930 - 5 1.70e-05 CTCCTTTCTG CTCGCTCTCAGCCACCCACCT TTCT chr13:102395039-10239513 + 34 2.06e-05 caaacaccag ctgcctcaccaacgcccaccc agcacggatg chr17:9032282-9032382 + 47 2.26e-05 TACTGCCAAA GCCACCCACAGCCCGTGTCCC ATTCTGATTT chr1:6382567-6382667 + 75 2.48e-05 TCTATGCTGT cgccgccgcccgggcccgggg TTCCT chr10:21853490-21853590 + 78 2.48e-05 TGTTGGCAGC CCGCCCCGCTCCAGCTCACAG TT chr15:66174658-66174758 - 40 2.71e-05 ATTTTGGACA CCCTCCCTCCCCGATGTGCCT CTCCCCTCTC chr16:95814359-95814459 - 46 3.24e-05 TTTCCCTGCA CTCTGCCCCACCTTTACTCCT AGGCAGTCAG chr5:101365305-101365405 - 47 3.54e-05 GGAGCCAGCT TTCCCGCACTGCCTCCCAGTG TTGGCGGCGA chr14:120831688-12083178 - 80 3.54e-05 . ATCGCCCTCTCGTGGACGCTG TGTGCATAAC chr4:128085121-128085221 - 30 3.86e-05 TCCTGGAGGA GGCCGGCTGTGCTCTACTCCC CGCTGGCCAT chr18:82508180-82508280 - 69 4.20e-05 GCAGAGAGGC CCCGGGAGCAGTCGCACACCC CTTACAGCTG chr17:26046559-26046659 + 55 4.57e-05 AACCAACCTA CCcagcatgtgtcctcggcac tctctgcagc chrX:11887581-11887681 - 50 4.57e-05 GGTGCCGACG CCCTGGCCGAGATGTACTGGC GATGATAATG chr14:61498132-61498232 - 46 5.39e-05 CTCTAGGGGG CGCGCTAGCCCCAGCCCGCGC CTGCACTGTT chr5:42918568-42918668 + 57 7.43e-05 GAGGCAGAGT GTCTACCTCGAATCCACACTC AGGAACAGAT chr7:49408052-49408152 - 25 7.43e-05 GCTTCTTCAG CCCTACCTGAGTTTAACTCCC GAAGGTCCAT chr14:115017595-11501769 + 26 8.66e-05 GTGCAGCCAG CCCTGCCACCGTTACTAAGAG TCACCAGCAG chr6:37419546-37419646 - 75 9.34e-05 GAGTA CCCGAGCAGCAGCGCCGAGCG CATGCGTGGT chr11:113438826-11343892 - 23 1.17e-04 TGGTTTTGCA GGCGCCCTCACACATGTGCCC ATAATCCACA chr2:57181875-57181975 - 13 1.25e-04 ACACATGCGA AGCGCGCGCTCTACCACTGAG CTACATCCCC chr12:77604037-77604137 - 80 1.25e-04 . ACCACCCGGTGCTCACGTCTT AGGAAGTCTC chr19:5802405-5802505 - 68 1.55e-04 GCAATAAATA CCGGCGCTCCGGGCTCTGCGT CAGGCATTCA chr15:32778945-32779045 - 48 6.35e-04 GCATTCTAGC TGCGCCCCGGAAACGCGGCGC CTTCTCACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTSCCWSCSHYCCCCDCHS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:10019047-10019147 9.2e-12 [-1]_79 chr18:70028755-70028855 4.2e-11 73_[+1]_6 chr15:95022589-95022689 2.1e-09 78_[-1]_1 chr2:135029150-135029250 8.4e-09 30_[+1]_49 chr10:45446068-45446168 1.5e-08 53_[-1]_26 chr16:44633030-44633130 3e-08 [-1]_79 chr17:66478233-66478333 3.6e-08 74_[-1]_5 chr13:37680913-37681013 5.9e-08 30_[-1]_49 chr15:68739788-68739888 6.9e-08 57_[+1]_22 chr3:104431103-104431203 9.5e-08 78_[+1]_1 chr5:18086986-18087086 1.8e-07 46_[-1]_33 chr4:85054907-85055007 2.4e-07 70_[+1]_9 chr18:41241176-41241276 3.1e-07 26_[-1]_53 chr13:95086034-95086134 4.2e-07 31_[-1]_48 chr16:94931943-94932043 4.8e-07 12_[-1]_67 chr3:127107323-127107423 6.3e-07 34_[+1]_45 chr4:28298889-28298989 9.3e-07 64_[-1]_15 chr10:119065363-11906546 1.1e-06 64_[+1]_15 chr6:31160197-31160297 1.2e-06 64_[-1]_15 chr11:51085164-51085264 1.2e-06 33_[-1]_46 chrX:12494361-12494461 1.4e-06 30_[-1]_49 chr9:49989793-49989893 1.4e-06 68_[-1]_11 chrX:98506360-98506460 1.5e-06 3_[-1]_76 chr3:88200923-88201023 2.5e-06 41_[-1]_38 chr6:112879939-112880039 2.5e-06 67_[+1]_12 chr18:45993437-45993537 2.5e-06 71_[+1]_8 chr1:151998724-151998824 2.8e-06 48_[-1]_31 chr6:89552490-89552590 3.2e-06 28_[+1]_51 chr5:92456291-92456391 3.2e-06 61_[+1]_18 chr16:89757375-89757475 4e-06 19_[+1]_60 chr4:103536312-103536412 4.5e-06 39_[-1]_40 chr9:76881820-76881920 4.5e-06 75_[-1]_4 chr2:58419519-58419619 4.5e-06 37_[-1]_42 chr8:16613879-16613979 5e-06 5_[+1]_74 chr14:118180169-11818026 5e-06 79_[-1] chr14:61648585-61648685 5.5e-06 62_[-1]_17 chr18:64856165-64856265 6.2e-06 58_[-1]_21 chr5:126733474-126733574 6.2e-06 55_[+1]_24 chr8:125133575-125133675 6.2e-06 38_[-1]_41 chr5:125245579-125245679 6.9e-06 55_[+1]_24 chr5:42171853-42171953 6.9e-06 35_[-1]_44 chr17:72781760-72781860 6.9e-06 4_[-1]_75 chr1:119016771-119016871 1e-05 43_[+1]_36 chr3:149385852-149385952 1e-05 26_[-1]_53 chr13:44282862-44282962 1e-05 1_[+1]_78 chr14:21099315-21099415 1e-05 29_[+1]_50 chr16:92591226-92591326 1.2e-05 79_[+1] chr17:44634459-44634559 1.2e-05 52_[+1]_27 chr14:119680065-11968016 1.2e-05 38_[-1]_41 chr18:86238419-86238519 1.3e-05 47_[-1]_32 chr6:31159243-31159343 1.3e-05 25_[-1]_54 chr16:29839085-29839185 1.4e-05 13_[+1]_66 chr14:39034375-39034475 1.4e-05 68_[-1]_11 chr5:25829801-25829901 1.4e-05 55_[+1]_24 chr13:107207838-10720793 1.5e-05 73_[-1]_6 chr13:110139203-11013930 1.7e-05 4_[-1]_75 chr13:102395039-10239513 2.1e-05 33_[+1]_46 chr17:9032282-9032382 2.3e-05 46_[+1]_33 chr1:6382567-6382667 2.5e-05 74_[+1]_5 chr10:21853490-21853590 2.5e-05 77_[+1]_2 chr15:66174658-66174758 2.7e-05 39_[-1]_40 chr16:95814359-95814459 3.2e-05 45_[-1]_34 chr5:101365305-101365405 3.5e-05 46_[-1]_33 chr14:120831688-12083178 3.5e-05 79_[-1] chr4:128085121-128085221 3.9e-05 29_[-1]_50 chr18:82508180-82508280 4.2e-05 68_[-1]_11 chr17:26046559-26046659 4.6e-05 54_[+1]_25 chrX:11887581-11887681 4.6e-05 49_[-1]_30 chr14:61498132-61498232 5.4e-05 45_[-1]_34 chr5:42918568-42918668 7.4e-05 56_[+1]_23 chr7:49408052-49408152 7.4e-05 24_[-1]_55 chr14:115017595-11501769 8.7e-05 25_[+1]_54 chr6:37419546-37419646 9.3e-05 74_[-1]_5 chr11:113438826-11343892 0.00012 22_[-1]_57 chr2:57181875-57181975 0.00013 12_[-1]_67 chr12:77604037-77604137 0.00013 79_[-1] chr19:5802405-5802505 0.00015 67_[-1]_12 chr15:32778945-32779045 0.00064 47_[-1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTSCCWSCSHYCCCCDCHS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTSCCWSCSHYCCCCDCHS width=21 seqs=78 chr13:10019047-10019147 ( 1) CCCTCCCTCCCCCCTCCTCTC 1 chr18:70028755-70028855 ( 74) CCCTCCCTCCCTCCTCCTCTC 1 chr15:95022589-95022689 ( 79) TCCCCCCTCCCCTCCCCTCTC 1 chr2:135029150-135029250 ( 31) CTCTCCCTGCCTCCCTCTCTC 1 chr10:45446068-45446168 ( 54) CCCTCCACCCCACCCCCACAC 1 chr16:44633030-44633130 ( 1) ACCCCCCCCCACCCCCCACCC 1 chr17:66478233-66478333 ( 75) GCCTGCCAGCGACACCCGCTC 1 chr13:37680913-37681013 ( 31) CCCTGCCTCACCCCACCTCTT 1 chr15:68739788-68739888 ( 58) CCCTCCCCGTCACCACCACAC 1 chr3:104431103-104431203 ( 79) ACCTCCCACAGACGCCCACCC 1 chr5:18086986-18087086 ( 47) CCCACCCACCCTCACACACAC 1 chr4:85054907-85055007 ( 71) ATCCCCCTGCCTCCTCCTCCC 1 chr18:41241176-41241276 ( 27) GCCGCCCACAGCTCTCCTCAG 1 chr13:95086034-95086134 ( 32) CCCGGCCCCACACCCACACTT 1 chr16:94931943-94932043 ( 13) TCCACCCTCCCACCTCCTGCC 1 chr3:127107323-127107423 ( 35) CCCTGGCAGACACCCCGAGTC 1 chr4:28298889-28298989 ( 65) CCCTCCCACTACCATCTGCTG 1 chr10:119065363-11906546 ( 65) CTCTCCCTCCCGTCCTCGGGG 1 chr6:31160197-31160297 ( 65) ACCGCCCGCCCGCCCACAGTG 1 chr11:51085164-51085264 ( 34) GTCTCCCAGCCTTGGCCACAG 1 chrX:12494361-12494461 ( 31) ACCTCCCACTGTACCCCTGAG 1 chr9:49989793-49989893 ( 69) CGCTGGCCCACTTCTCCGCTG 1 chrX:98506360-98506460 ( 4) CCCCACCCCCCGTCCCTTCTC 1 chr3:88200923-88201023 ( 42) CTCTCGCTCGCTCGCTCGCTC 1 chr6:112879939-112880039 ( 68) CCCCCGCAGCCCCTCCAGCTG 1 chr18:45993437-45993537 ( 72) TCCTGCCACCAGACTCCTCTG 1 chr1:151998724-151998824 ( 49) GCCTGGCTGAGCTCCTCACAC 1 chr6:89552490-89552590 ( 29) CCCTCCATGTCTTCTCCGGGC 1 chr5:92456291-92456391 ( 62) TTCTCCCAGCCTCAGCCGCAG 1 chr16:89757375-89757475 ( 20) CCCTGCCAGACAGACACGGTC 1 chr4:103536312-103536412 ( 40) GGCAGGCAGCCACCCCCAGTG 1 chr9:76881820-76881920 ( 76) CCCCCCACCCCAAGCTCGCTG 1 chr2:58419519-58419619 ( 38) CCCTCCCACCACTGAATTCAG 1 chr8:16613879-16613979 ( 6) CTCTCTCTCTCTCTCCCTGTC 1 chr14:118180169-11818026 ( 80) CCCGCCCAGCGCGCGCTTCCT 1 chr14:61648585-61648685 ( 63) GCCGGCCCGCGTTCCCGGCAT 1 chr18:64856165-64856265 ( 59) CCCTCGCTCCCCACGGTTCAC 1 chr5:126733474-126733574 ( 56) GTCTGCCAGCGCCACCTAGTG 1 chr8:125133575-125133675 ( 39) CCCACCCAGAACTTCCGGCTC 1 chr5:125245579-125245679 ( 56) CTCTGCCTCTGCCTTACGCCG 1 chr5:42171853-42171953 ( 36) GCCACGCGCCACCCACCACAG 1 chr17:72781760-72781860 ( 5) ACCTCCCTGCCAACCATGGTT 1 chr1:119016771-119016871 ( 44) CCGCCTCTGCCATGCCTTCTC 1 chr3:149385852-149385952 ( 27) TCCTCCCTGTAAACCCTGGCC 1 chr13:44282862-44282962 ( 2) GCCCCGCTGCAAAGCCCGGGG 1 chr14:21099315-21099415 ( 30) TCGTCCCTGTGCTGTCCACCC 1 chr16:92591226-92591326 ( 80) GCCTCCCACACTTGATTTCTC 1 chr17:44634459-44634559 ( 53) TGGTCCCCCAACTCCCCGCTG 1 chr14:119680065-11968016 ( 39) CTCTGCATCCCCTACCCACGT 1 chr18:86238419-86238519 ( 48) GTCTGCCTGCATGCCACTGTG 1 chr6:31159243-31159343 ( 26) ACGTGGCAGCCTCCCCGGCTT 1 chr16:29839085-29839185 ( 14) AGCGCCCCGCCCCCACTTGCC 1 chr14:39034375-39034475 ( 69) GCCTGGAAGCCTACGCCTCAC 1 chr5:25829801-25829901 ( 56) CCCTGCCAGTCTAGATCTCAG 1 chr13:107207838-10720793 ( 74) GCGCGTCTCCACCCCACACTC 1 chr13:110139203-11013930 ( 5) CTCGCTCTCAGCCACCCACCT 1 chr13:102395039-10239513 ( 34) CTGCCTCACCAACGCCCACCC 1 chr17:9032282-9032382 ( 47) GCCACCCACAGCCCGTGTCCC 1 chr1:6382567-6382667 ( 75) CGCCGCCGCCCGGGCCCGGGG 1 chr10:21853490-21853590 ( 78) CCGCCCCGCTCCAGCTCACAG 1 chr15:66174658-66174758 ( 40) CCCTCCCTCCCCGATGTGCCT 1 chr16:95814359-95814459 ( 46) CTCTGCCCCACCTTTACTCCT 1 chr5:101365305-101365405 ( 47) TTCCCGCACTGCCTCCCAGTG 1 chr14:120831688-12083178 ( 80) ATCGCCCTCTCGTGGACGCTG 1 chr4:128085121-128085221 ( 30) GGCCGGCTGTGCTCTACTCCC 1 chr18:82508180-82508280 ( 69) CCCGGGAGCAGTCGCACACCC 1 chr17:26046559-26046659 ( 55) CCCAGCATGTGTCCTCGGCAC 1 chrX:11887581-11887681 ( 50) CCCTGGCCGAGATGTACTGGC 1 chr14:61498132-61498232 ( 46) CGCGCTAGCCCCAGCCCGCGC 1 chr5:42918568-42918668 ( 57) GTCTACCTCGAATCCACACTC 1 chr7:49408052-49408152 ( 25) CCCTACCTGAGTTTAACTCCC 1 chr14:115017595-11501769 ( 26) CCCTGCCACCGTTACTAAGAG 1 chr6:37419546-37419646 ( 75) CCCGAGCAGCAGCGCCGAGCG 1 chr11:113438826-11343892 ( 23) GGCGCCCTCACACATGTGCCC 1 chr2:57181875-57181975 ( 13) AGCGCGCGCTCTACCACTGAG 1 chr12:77604037-77604137 ( 80) ACCACCCGGTGCTCACGTCTT 1 chr19:5802405-5802505 ( 68) CCGGCGCTCCGGGCTCTGCGT 1 chr15:32778945-32779045 ( 48) TGCGCCCCGGAAACGCGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTSCCWSCSHYCCCCDCHS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.7221 E= 1.9e-017 -102 129 2 -131 -1293 161 -74 -39 -1293 207 -106 -1293 -148 -26 -16 88 -248 155 58 -1293 -1293 169 11 -189 -148 207 -1293 -1293 22 -36 -106 48 -1293 143 98 -1293 -31 129 -248 -48 -57 133 33 -1293 -23 79 -106 -2 -78 107 -148 11 -102 133 11 -167 -131 136 -106 -31 -39 152 -248 -116 -348 166 -89 -67 11 -1293 64 33 -1293 177 33 -1293 -31 18 -89 52 -1293 122 69 -89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTSCCWSCSHYCCCCDCHS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 78 E= 1.9e-017 0.141026 0.525641 0.217949 0.115385 0.000000 0.653846 0.128205 0.217949 0.000000 0.897436 0.102564 0.000000 0.102564 0.179487 0.192308 0.525641 0.051282 0.628205 0.320513 0.000000 0.000000 0.692308 0.230769 0.076923 0.102564 0.897436 0.000000 0.000000 0.333333 0.166667 0.102564 0.397436 0.000000 0.576923 0.423077 0.000000 0.230769 0.525641 0.038462 0.205128 0.192308 0.538462 0.269231 0.000000 0.243590 0.371795 0.102564 0.282051 0.166667 0.448718 0.076923 0.307692 0.141026 0.538462 0.230769 0.089744 0.115385 0.551282 0.102564 0.230769 0.217949 0.615385 0.038462 0.128205 0.025641 0.679487 0.115385 0.179487 0.307692 0.000000 0.333333 0.358974 0.000000 0.730769 0.269231 0.000000 0.230769 0.243590 0.115385 0.410256 0.000000 0.500000 0.346154 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTSCCWSCSHYCCCCDCHS MEME-1 regular expression -------------------------------------------------------------------------------- [CG][CT]CT[CG][CG]C[TA][CG][CAT][CG][CTA][CT][CG][CT][CA]C[TGA][CG][TCA][CG] -------------------------------------------------------------------------------- Time 506.01 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACYAGRKGGCRCY MEME-2 width = 15 sites = 31 llr = 383 E-value = 4.7e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACYAGRKGGCRCY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:8:1a:6::1342: pos.-specific C 79175:::::17:65 probability G 2::3::944a8:52: matrix T :11:4:1:6:1:1:5 bits 2.2 * 2.0 * 1.8 * ** * 1.6 * ** * Relative 1.3 * * ** * Entropy 1.1 * * *** *** * (17.8 bits) 0.9 **** ******* * 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CCACCAGATGGCGCT consensus GT GG AA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYAGRKGGCRCY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr9:28261333-28261433 + 38 5.04e-10 CAAATCATAA CCACCAGATGGCGCC AAATCTCCAG chr10:119065925-11906602 + 48 8.57e-09 AAGCCACGTC CCACTAGAGGGCGCT GTCCTGGTCC chr3:87562280-87562380 - 81 2.36e-08 TCTAG CCACTAGAGGGCACT CTTGCAACGT chrX:94689636-94689736 + 20 2.36e-08 AGTAGAGTGA CCACCAGATGGCAGC AGCACCCAAT chr11:5290625-5290725 + 50 1.02e-07 CTTTACTGGA CCACTAGAGGGCAGT GTCACCCCGT chr12:40824137-40824237 - 75 1.16e-07 CAGCAGTGAA GCACTAGATGGCACT GTTATCAGGC chr5:124162536-124162636 + 5 1.28e-07 GCAT GCACTAGGGGGCACT ACCTGCTCCT chr9:50452323-50452423 + 57 1.28e-07 CGAGAGTCTG ACACTAGAGGGCGCC ACCAGCTGCT chr3:115660963-115661063 + 45 1.28e-07 GGCCTGAGGG CCACTAGGTGGCAAT AGCGACCTAA chrX:70574196-70574296 - 32 1.58e-07 CTAAAAGTAT CCACCAGGGGACGCC AACGCGCAGG chr17:67175733-67175833 - 45 3.04e-07 CTCAAATTCC CCAGCAGGTGGAGAC TTGTAATCCT chr12:12176184-12176284 + 48 3.85e-07 CTCCATTTGG CCACCAGGGGGCATC ACTTACCAAG chr13:50211793-50211893 + 51 4.29e-07 CCACCTAGCA GCAGCAGGTGGCGAT ATGAGACAGA chr1:180434068-180434168 + 74 4.29e-07 CTCCCTGCTT CCACTAGAGGGAAAC CTTGCTCTGC chr4:105049968-105050068 + 79 5.73e-07 GGCCTCACTG CTACCAGGTGGAGCC TCCTGTT chr1:10596318-10596418 - 83 7.82e-07 AGG GCCCCAGATGGAGCT GTTTCTCAGC chr9:23249976-23250076 - 50 8.59e-07 CTGACACTTG CCGCCAGATGGCAGC ACGGAGCTCC chr7:144081259-144081359 + 71 1.02e-06 TCAGACCTAG CCAGCAGAGGGTGCT GGAGTCTCTG chr19:16063853-16063953 + 24 1.12e-06 CCTATGATGA ACTCCAGAGGGCGCT CGAAGACTTT chr3:117751562-117751662 - 74 1.34e-06 TTAACTCCAG CCACTAGGAGGAGCT GGGAGCTCCT chr17:14370417-14370517 + 79 1.59e-06 ACCCAGCACT CCTCCAGATGGCTCT GAAATGG chr4:90170848-90170948 - 12 1.87e-06 CTACTTACTG CCACCATGTGGAAGT CTTTAAGCTT chr13:92960039-92960139 - 61 3.05e-06 CTTTAGGCAA GCACAAGGTGGAGGC GTGGAACTTT chr6:31159243-31159343 - 70 3.05e-06 TGTTCAGTCC CTCCCAGGTGGAGCC AGCACGGCAG chr12:117403472-11740357 + 29 3.29e-06 GCAGTTGTGA ACAGCAGATGTCGCT ATTGCCTGCT chr11:113438826-11343892 + 51 3.56e-06 gcctgcaaaa ccagaagagggagac aagtgccctg chr17:72781760-72781860 - 51 3.85e-06 ATCTCTGTGG CCACGAGGTGTCACC CTCAGCCTTA chr14:61498132-61498232 + 68 4.80e-06 GCTAGCGCGC CCCCTAGAGGCCGGT CACGGGAACC chr18:66082113-66082213 + 82 5.17e-06 CCACCTTCCT CCAGCATGTGCCACC TTCC chr2:44357966-44358066 + 23 6.86e-06 TTCTAAGCTT GCAGTAGATGGCTAT GCCTGCAGTG chr4:103475432-103475532 - 52 2.22e-05 GCCAAGAGCT ACAGCATATGACACC GTGGTTCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYAGRKGGCRCY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:28261333-28261433 5e-10 37_[+2]_48 chr10:119065925-11906602 8.6e-09 47_[+2]_38 chr3:87562280-87562380 2.4e-08 80_[-2]_5 chrX:94689636-94689736 2.4e-08 19_[+2]_66 chr11:5290625-5290725 1e-07 49_[+2]_36 chr12:40824137-40824237 1.2e-07 74_[-2]_11 chr5:124162536-124162636 1.3e-07 4_[+2]_81 chr9:50452323-50452423 1.3e-07 56_[+2]_29 chr3:115660963-115661063 1.3e-07 44_[+2]_41 chrX:70574196-70574296 1.6e-07 31_[-2]_54 chr17:67175733-67175833 3e-07 44_[-2]_41 chr12:12176184-12176284 3.8e-07 47_[+2]_38 chr13:50211793-50211893 4.3e-07 50_[+2]_35 chr1:180434068-180434168 4.3e-07 73_[+2]_12 chr4:105049968-105050068 5.7e-07 78_[+2]_7 chr1:10596318-10596418 7.8e-07 82_[-2]_3 chr9:23249976-23250076 8.6e-07 49_[-2]_36 chr7:144081259-144081359 1e-06 70_[+2]_15 chr19:16063853-16063953 1.1e-06 23_[+2]_62 chr3:117751562-117751662 1.3e-06 73_[-2]_12 chr17:14370417-14370517 1.6e-06 78_[+2]_7 chr4:90170848-90170948 1.9e-06 11_[-2]_74 chr13:92960039-92960139 3.1e-06 60_[-2]_25 chr6:31159243-31159343 3.1e-06 69_[-2]_16 chr12:117403472-11740357 3.3e-06 28_[+2]_57 chr11:113438826-11343892 3.6e-06 50_[+2]_35 chr17:72781760-72781860 3.8e-06 50_[-2]_35 chr14:61498132-61498232 4.8e-06 67_[+2]_18 chr18:66082113-66082213 5.2e-06 81_[+2]_4 chr2:44357966-44358066 6.9e-06 22_[+2]_63 chr4:103475432-103475532 2.2e-05 51_[-2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYAGRKGGCRCY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACYAGRKGGCRCY width=15 seqs=31 chr9:28261333-28261433 ( 38) CCACCAGATGGCGCC 1 chr10:119065925-11906602 ( 48) CCACTAGAGGGCGCT 1 chr3:87562280-87562380 ( 81) CCACTAGAGGGCACT 1 chrX:94689636-94689736 ( 20) CCACCAGATGGCAGC 1 chr11:5290625-5290725 ( 50) CCACTAGAGGGCAGT 1 chr12:40824137-40824237 ( 75) GCACTAGATGGCACT 1 chr5:124162536-124162636 ( 5) GCACTAGGGGGCACT 1 chr9:50452323-50452423 ( 57) ACACTAGAGGGCGCC 1 chr3:115660963-115661063 ( 45) CCACTAGGTGGCAAT 1 chrX:70574196-70574296 ( 32) CCACCAGGGGACGCC 1 chr17:67175733-67175833 ( 45) CCAGCAGGTGGAGAC 1 chr12:12176184-12176284 ( 48) CCACCAGGGGGCATC 1 chr13:50211793-50211893 ( 51) GCAGCAGGTGGCGAT 1 chr1:180434068-180434168 ( 74) CCACTAGAGGGAAAC 1 chr4:105049968-105050068 ( 79) CTACCAGGTGGAGCC 1 chr1:10596318-10596418 ( 83) GCCCCAGATGGAGCT 1 chr9:23249976-23250076 ( 50) CCGCCAGATGGCAGC 1 chr7:144081259-144081359 ( 71) CCAGCAGAGGGTGCT 1 chr19:16063853-16063953 ( 24) ACTCCAGAGGGCGCT 1 chr3:117751562-117751662 ( 74) CCACTAGGAGGAGCT 1 chr17:14370417-14370517 ( 79) CCTCCAGATGGCTCT 1 chr4:90170848-90170948 ( 12) CCACCATGTGGAAGT 1 chr13:92960039-92960139 ( 61) GCACAAGGTGGAGGC 1 chr6:31159243-31159343 ( 70) CTCCCAGGTGGAGCC 1 chr12:117403472-11740357 ( 29) ACAGCAGATGTCGCT 1 chr11:113438826-11343892 ( 51) CCAGAAGAGGGAGAC 1 chr17:72781760-72781860 ( 51) CCACGAGGTGTCACC 1 chr14:61498132-61498232 ( 68) CCCCTAGAGGCCGGT 1 chr18:66082113-66082213 ( 82) CCAGCATGTGCCACC 1 chr2:44357966-44358066 ( 23) GCAGTAGATGGCTAT 1 chr4:103475432-103475532 ( 52) ACAGCATATGACACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYAGRKGGCRCY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.4066 E= 4.7e-011 -115 166 -15 -1160 -1160 213 -1160 -214 150 -115 -273 -214 -1160 179 27 -1160 -214 135 -273 31 181 -1160 -1160 -1160 -1160 -1160 207 -156 102 -1160 97 -1160 -314 -1160 85 102 -1160 -1160 222 -1160 -214 -173 191 -214 2 166 -1160 -314 55 -1160 127 -214 -56 144 -15 -314 -1160 117 -1160 85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYAGRKGGCRCY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 31 E= 4.7e-011 0.129032 0.677419 0.193548 0.000000 0.000000 0.935484 0.000000 0.064516 0.806452 0.096774 0.032258 0.064516 0.000000 0.741935 0.258065 0.000000 0.064516 0.548387 0.032258 0.354839 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.903226 0.096774 0.580645 0.000000 0.419355 0.000000 0.032258 0.000000 0.387097 0.580645 0.000000 0.000000 1.000000 0.000000 0.064516 0.064516 0.806452 0.064516 0.290323 0.677419 0.000000 0.032258 0.419355 0.000000 0.516129 0.064516 0.193548 0.580645 0.193548 0.032258 0.000000 0.483871 0.000000 0.516129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYAGRKGGCRCY MEME-2 regular expression -------------------------------------------------------------------------------- CCA[CG][CT]AG[AG][TG]GG[CA][GA]C[TC] -------------------------------------------------------------------------------- Time 953.30 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCCTGGCWGM MEME-3 width = 11 sites = 52 llr = 528 E-value = 4.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCCTGGCWGM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:::2::26:6 pos.-specific C ::77:::6:24 probability G 193::9a2:8: matrix T :1:381::3:: bits 2.2 * 2.0 * 1.8 * ** 1.6 * ** Relative 1.3 ** ** * Entropy 1.1 ******* ** (14.6 bits) 0.9 ******** ** 0.7 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel AGCCTGGCAGA consensus GT ATCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCTGGCWGM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr2:5249993-5250093 + 21 1.38e-07 GAAACTGCCA AGCCTGGCAGA TGCTAAGGTT chr2:168403011-168403111 - 56 2.40e-07 AAGCCGCAAG AGCCTGGCAGC TCCCACTGCT chr12:88841513-88841613 + 3 4.81e-07 AA AGCCTGGCTGC TTTTGTCTCT chr19:19029403-19029503 + 15 8.59e-07 CTGGACACCA AGCCTGGCACA TAGAAGAACA chr18:84497866-84497966 + 23 1.10e-06 TGCTGATAGG AGCCTGGCACC GATGACAAGT chr13:54855848-54855948 + 58 1.10e-06 AGCCGTGCTA AGCCTGGGAGA TGTGTGTGTG chr7:144314368-144314468 - 85 1.10e-06 ATTCT AGCCTGGGAGA AAAGAAGCCA chr5:38372251-38372351 + 56 1.84e-06 TTCAGAAGTG AGCTTGGCAGA AAATCTTAAA chr1:98910494-98910594 + 64 1.84e-06 attttatatc agcttggcaga gatctagagt chr3:149085798-149085898 - 55 1.84e-06 AGCAAACACA AGCCAGGCAGA GCCTTGGAGC chr10:53421642-53421742 + 60 1.84e-06 atcccgcgta agccaggcaga ttatgtttcc chr14:95981720-95981820 - 53 1.84e-06 ATTACAGCTG AGCCTGGAAGC TGATTCAGCA chr4:101692853-101692953 + 13 2.22e-06 TGGCTGTCCC AGCTTGGCAGC CACGCATCAG chr2:21054392-21054492 - 88 2.22e-06 GG AGGCTGGCTGA GTCATGGCTC chr16:11778085-11778185 - 79 2.43e-06 CAGAATCATG AGGCTGGCTGC CAAAAGTGTT chr10:119065925-11906602 - 16 2.64e-06 TAGATTAATA GGCCTGGCAGC AAGCTCGCTT chr15:67031893-67031993 - 70 2.64e-06 CCCGAGCTAG AGCCTGGCTCA TAACTGATGC chr6:85218756-85218856 - 23 3.17e-06 GGCCCAGAGC AGCCTGGGTGC CATGAAGGAG chr13:37680913-37681013 + 10 4.25e-06 ATAGCAACC AGGCTGGGAGA AGGAGGAGTG chr18:38059250-38059350 + 87 4.64e-06 CACCCCCACC AGGCTGGGAGC CTC chr12:40824137-40824237 - 58 4.64e-06 CACTGTTATC AGGCTGGAAGA GACTCCTGGG chr4:46771150-46771250 - 8 6.40e-06 CACTCGGGGA AGCCAGGCACA GATGGTA chr2:46418221-46418321 - 8 6.40e-06 TTCATCTAAA AGCTTGGCACA CAGTCCC chr1:180434068-180434168 + 42 6.40e-06 CCTCATCCCA GGGCTGGCAGA TGGTATCCTG chr16:54797183-54797283 + 34 8.19e-06 tatgagcact aggctggctcc acttcttagc chr2:61272617-61272717 + 26 8.19e-06 CATGTTAATA AGCCAGGAAGA AATTCTCCCC chr4:48771802-48771902 - 60 1.01e-05 AACAGATCAA AGGCTGGATGC TGTTTGCGTA chr16:95814359-95814459 - 21 1.13e-05 AGTCAGCCAT AGCCTTGCAGA TTCATTACCT chr17:27762854-27762954 + 60 1.13e-05 TCTGAACCAG GGCTTGGCAGA AATACTAAGA chr11:13555660-13555760 - 5 1.13e-05 CGTACCTCCT ATCCTGGCAGA TTCC chr3:88200923-88201023 + 63 1.24e-05 cgagcgagag agcCAGGCTCA TCCGGCTCCC chr3:36406276-36406376 - 80 1.24e-05 TTGGGGCTTT AGCTTGGCTCA GTTACTATCT chr4:42696908-42697008 - 2 1.24e-05 CTCCGTGGTA AGCTTGGCTCA A chr1:63406330-63406430 + 65 1.44e-05 GTGGATTCTC AGGCTGGAACA AATGTTGAGG chr9:40246591-40246691 + 61 1.44e-05 AAGAATGCAA AGCCAGGGTGC AACGTGGAAG chr15:73887325-73887425 - 5 1.55e-05 AATCACACTT AGCTTGGATGC GGCG chr3:82275401-82275501 + 20 1.55e-05 CTTAATTTGT AGCCAGGATGC AGAAGCACAG chr8:28148604-28148704 - 14 1.81e-05 TAACAAGGCC AGCCTTGCTGA CAGCAGGGAG chr2:3958293-3958393 + 76 1.96e-05 GAGATTTTGG AGGCAGGAAGC CTGGTTGTAG chr8:125133575-125133675 - 6 1.96e-05 TGTTCAACAA GGCTTGGCTGC TCTGT chr2:114918865-114918965 - 43 1.96e-05 CTGCATTTAA AGGCAGGAAGC AGAGTCTGAA chr11:32112986-32113086 - 9 2.11e-05 GGAGGCAGCC TGCCTGGCAGA AGCCCTTT chr1:41390055-41390155 + 82 2.29e-05 TAGCAGCAGC AGGCTTGCAGA CACACAGC chr9:23249976-23250076 + 7 2.43e-05 GGCAGG AGGCAGGCTCA AGGCTGCAAC chr19:47484924-47485024 + 87 3.39e-05 CCTTTTAAGA GGCTTGGAAGC TTG chr1:24891438-24891538 - 52 3.65e-05 ACTACAAGTG GGGTTGGCTGA ATATGTTCTA chr14:118090164-11809026 - 4 3.65e-05 TGGTTCCTAC AGCCTGGGCGC TCA chr1:10596318-10596418 + 4 3.65e-05 CAG ATCTTGGCAGC AATCGGCAGC chr16:94931943-94932043 + 36 4.11e-05 AGGGTGGAGC AGGCTCGCAGA GCCAGGTGGC chr1:120425518-120425618 - 73 4.35e-05 TACTAACAGG AGCGTGGGAGA CTCAAAGGCA chr14:96430643-96430743 + 63 4.35e-05 TCACAGCACC GGCTTGGGTGA AATGTGGCTC chr11:10562749-10562849 + 38 6.36e-05 ATGACTTCCT ATCCTGGAACA TGTACAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCTGGCWGM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:5249993-5250093 1.4e-07 20_[+3]_69 chr2:168403011-168403111 2.4e-07 55_[-3]_34 chr12:88841513-88841613 4.8e-07 2_[+3]_87 chr19:19029403-19029503 8.6e-07 14_[+3]_75 chr18:84497866-84497966 1.1e-06 22_[+3]_67 chr13:54855848-54855948 1.1e-06 57_[+3]_32 chr7:144314368-144314468 1.1e-06 84_[-3]_5 chr5:38372251-38372351 1.8e-06 55_[+3]_34 chr1:98910494-98910594 1.8e-06 63_[+3]_26 chr3:149085798-149085898 1.8e-06 54_[-3]_35 chr10:53421642-53421742 1.8e-06 59_[+3]_30 chr14:95981720-95981820 1.8e-06 52_[-3]_37 chr4:101692853-101692953 2.2e-06 12_[+3]_77 chr2:21054392-21054492 2.2e-06 87_[-3]_2 chr16:11778085-11778185 2.4e-06 78_[-3]_11 chr10:119065925-11906602 2.6e-06 15_[-3]_74 chr15:67031893-67031993 2.6e-06 69_[-3]_20 chr6:85218756-85218856 3.2e-06 22_[-3]_67 chr13:37680913-37681013 4.2e-06 9_[+3]_80 chr18:38059250-38059350 4.6e-06 86_[+3]_3 chr12:40824137-40824237 4.6e-06 57_[-3]_32 chr4:46771150-46771250 6.4e-06 7_[-3]_82 chr2:46418221-46418321 6.4e-06 7_[-3]_82 chr1:180434068-180434168 6.4e-06 41_[+3]_48 chr16:54797183-54797283 8.2e-06 33_[+3]_56 chr2:61272617-61272717 8.2e-06 25_[+3]_64 chr4:48771802-48771902 1e-05 59_[-3]_30 chr16:95814359-95814459 1.1e-05 20_[-3]_69 chr17:27762854-27762954 1.1e-05 59_[+3]_30 chr11:13555660-13555760 1.1e-05 4_[-3]_85 chr3:88200923-88201023 1.2e-05 62_[+3]_27 chr3:36406276-36406376 1.2e-05 79_[-3]_10 chr4:42696908-42697008 1.2e-05 1_[-3]_88 chr1:63406330-63406430 1.4e-05 64_[+3]_25 chr9:40246591-40246691 1.4e-05 60_[+3]_29 chr15:73887325-73887425 1.6e-05 4_[-3]_85 chr3:82275401-82275501 1.6e-05 19_[+3]_70 chr8:28148604-28148704 1.8e-05 13_[-3]_76 chr2:3958293-3958393 2e-05 75_[+3]_14 chr8:125133575-125133675 2e-05 5_[-3]_84 chr2:114918865-114918965 2e-05 42_[-3]_47 chr11:32112986-32113086 2.1e-05 8_[-3]_81 chr1:41390055-41390155 2.3e-05 81_[+3]_8 chr9:23249976-23250076 2.4e-05 6_[+3]_83 chr19:47484924-47485024 3.4e-05 86_[+3]_3 chr1:24891438-24891538 3.6e-05 51_[-3]_38 chr14:118090164-11809026 3.6e-05 3_[-3]_86 chr1:10596318-10596418 3.6e-05 3_[+3]_86 chr16:94931943-94932043 4.1e-05 35_[+3]_54 chr1:120425518-120425618 4.3e-05 72_[-3]_17 chr14:96430643-96430743 4.3e-05 62_[+3]_27 chr11:10562749-10562849 6.4e-05 37_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCTGGCWGM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCCTGGCWGM width=11 seqs=52 chr2:5249993-5250093 ( 21) AGCCTGGCAGA 1 chr2:168403011-168403111 ( 56) AGCCTGGCAGC 1 chr12:88841513-88841613 ( 3) AGCCTGGCTGC 1 chr19:19029403-19029503 ( 15) AGCCTGGCACA 1 chr18:84497866-84497966 ( 23) AGCCTGGCACC 1 chr13:54855848-54855948 ( 58) AGCCTGGGAGA 1 chr7:144314368-144314468 ( 85) AGCCTGGGAGA 1 chr5:38372251-38372351 ( 56) AGCTTGGCAGA 1 chr1:98910494-98910594 ( 64) AGCTTGGCAGA 1 chr3:149085798-149085898 ( 55) AGCCAGGCAGA 1 chr10:53421642-53421742 ( 60) AGCCAGGCAGA 1 chr14:95981720-95981820 ( 53) AGCCTGGAAGC 1 chr4:101692853-101692953 ( 13) AGCTTGGCAGC 1 chr2:21054392-21054492 ( 88) AGGCTGGCTGA 1 chr16:11778085-11778185 ( 79) AGGCTGGCTGC 1 chr10:119065925-11906602 ( 16) GGCCTGGCAGC 1 chr15:67031893-67031993 ( 70) AGCCTGGCTCA 1 chr6:85218756-85218856 ( 23) AGCCTGGGTGC 1 chr13:37680913-37681013 ( 10) AGGCTGGGAGA 1 chr18:38059250-38059350 ( 87) AGGCTGGGAGC 1 chr12:40824137-40824237 ( 58) AGGCTGGAAGA 1 chr4:46771150-46771250 ( 8) AGCCAGGCACA 1 chr2:46418221-46418321 ( 8) AGCTTGGCACA 1 chr1:180434068-180434168 ( 42) GGGCTGGCAGA 1 chr16:54797183-54797283 ( 34) AGGCTGGCTCC 1 chr2:61272617-61272717 ( 26) AGCCAGGAAGA 1 chr4:48771802-48771902 ( 60) AGGCTGGATGC 1 chr16:95814359-95814459 ( 21) AGCCTTGCAGA 1 chr17:27762854-27762954 ( 60) GGCTTGGCAGA 1 chr11:13555660-13555760 ( 5) ATCCTGGCAGA 1 chr3:88200923-88201023 ( 63) AGCCAGGCTCA 1 chr3:36406276-36406376 ( 80) AGCTTGGCTCA 1 chr4:42696908-42697008 ( 2) AGCTTGGCTCA 1 chr1:63406330-63406430 ( 65) AGGCTGGAACA 1 chr9:40246591-40246691 ( 61) AGCCAGGGTGC 1 chr15:73887325-73887425 ( 5) AGCTTGGATGC 1 chr3:82275401-82275501 ( 20) AGCCAGGATGC 1 chr8:28148604-28148704 ( 14) AGCCTTGCTGA 1 chr2:3958293-3958393 ( 76) AGGCAGGAAGC 1 chr8:125133575-125133675 ( 6) GGCTTGGCTGC 1 chr2:114918865-114918965 ( 43) AGGCAGGAAGC 1 chr11:32112986-32113086 ( 9) TGCCTGGCAGA 1 chr1:41390055-41390155 ( 82) AGGCTTGCAGA 1 chr9:23249976-23250076 ( 7) AGGCAGGCTCA 1 chr19:47484924-47485024 ( 87) GGCTTGGAAGC 1 chr1:24891438-24891538 ( 52) GGGTTGGCTGA 1 chr14:118090164-11809026 ( 4) AGCCTGGGCGC 1 chr1:10596318-10596418 ( 4) ATCTTGGCAGC 1 chr16:94931943-94932043 ( 36) AGGCTCGCAGA 1 chr1:120425518-120425618 ( 73) AGCGTGGGAGA 1 chr14:96430643-96430743 ( 63) GGCTTGGGTGA 1 chr11:10562749-10562849 ( 38) ATCCTGGAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCTGGCWGM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.184 E= 4.4e-010 157 -1234 -67 -389 -1234 -1234 214 -231 -1234 173 43 -1234 -1234 177 -348 -19 -57 -1234 -1234 150 -1234 -348 211 -231 -1234 -1234 222 -1234 -43 152 -31 -1234 115 -348 -1234 28 -1234 11 184 -1234 111 84 -1234 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCTGGCWGM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 52 E= 4.4e-010 0.846154 0.000000 0.134615 0.019231 0.000000 0.000000 0.942308 0.057692 0.000000 0.711538 0.288462 0.000000 0.000000 0.730769 0.019231 0.250000 0.192308 0.000000 0.000000 0.807692 0.000000 0.019231 0.923077 0.057692 0.000000 0.000000 1.000000 0.000000 0.211538 0.615385 0.173077 0.000000 0.634615 0.019231 0.000000 0.346154 0.000000 0.230769 0.769231 0.000000 0.615385 0.384615 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCCTGGCWGM MEME-3 regular expression -------------------------------------------------------------------------------- AG[CG][CT]TGG[CA][AT][GC][AC] -------------------------------------------------------------------------------- Time 1388.87 secs. ******************************************************************************** ******************************************************************************** MOTIF KGCAGGARTAGAAACMCWGACTAAGACAGT MEME-4 width = 30 sites = 5 llr = 153 E-value = 2.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGCAGGARTAGAAACMCWGACTAAGACAGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:8::a6:826a8:424:8::8a26:8:: pos.-specific C ::a::2:::2:::2a68:2:a2:::2a::: probability G 48::a8:4::82::::::82::2:82::a: matrix T 6::2::::a::2:::::6:::8:::::2:a bits 2.2 * * * * * * 2.0 * * * * * * 1.8 * * * * * * * * * ** 1.6 * *** * * * * * * * ** Relative 1.3 ** *** * * * * * * * ** * ** Entropy 1.1 *********** ***** ******* **** (44.1 bits) 0.9 *********** ************* **** 0.7 *********** ****************** 0.4 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel TGCAGGAATAGAAACCCTGACTAAGACAGT consensus GA T C G CAG C AAACG CG AC T sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGARTAGAAACMCWGACTAAGACAGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr3:80521268-80521368 - 71 1.13e-18 . TGCAGGAATAGAAACCCTGACTAAGACAGT ATGTATGTAT chr16:49243525-49243625 - 28 7.79e-18 ATGATGTTTG TGCAGGAATAGAAACACTGACTAAGACAGT TGCCATCCCA chr13:5390150-5390250 + 14 1.32e-17 atgatgtttg tgcaggaatagaaaccctgactaaggcaGT CGTGTTTTGG chr19:57273985-57274085 + 34 4.50e-13 CTGAAAACAA GGCAGCAGTAATACCAAAGGCCAAGACAGT AATTACTTCT chr8:57017841-57017941 - 53 9.92e-13 TTACCCCGGG GACTGGAGTCGGAACCCACACTGAACCTGT TCATTACACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGARTAGAAACMCWGACTAAGACAGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:80521268-80521368 1.1e-18 70_[-4] chr16:49243525-49243625 7.8e-18 27_[-4]_43 chr13:5390150-5390250 1.3e-17 13_[+4]_57 chr19:57273985-57274085 4.5e-13 33_[+4]_37 chr8:57017841-57017941 9.9e-13 52_[-4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGARTAGAAACMCWGACTAAGACAGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGCAGGARTAGAAACMCWGACTAAGACAGT width=30 seqs=5 chr3:80521268-80521368 ( 71) TGCAGGAATAGAAACCCTGACTAAGACAGT 1 chr16:49243525-49243625 ( 28) TGCAGGAATAGAAACACTGACTAAGACAGT 1 chr13:5390150-5390250 ( 14) TGCAGGAATAGAAACCCTGACTAAGGCAGT 1 chr19:57273985-57274085 ( 34) GGCAGCAGTAATACCAAAGGCCAAGACAGT 1 chr8:57017841-57017941 ( 53) GACTGGAGTCGGAACCCACACTGAACCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGARTAGAAACMCWGACTAAGACAGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 13.308 E= 2.7e-001 -897 -897 90 107 -51 -897 190 -897 -897 222 -897 -897 148 -897 -897 -51 -897 -897 222 -897 -897 -10 190 -897 181 -897 -897 -897 107 -897 90 -897 -897 -897 -897 181 148 -10 -897 -897 -51 -897 190 -897 107 -897 -10 -51 181 -897 -897 -897 148 -10 -897 -897 -897 222 -897 -897 49 148 -897 -897 -51 190 -897 -897 49 -897 -897 107 -897 -10 190 -897 148 -897 -10 -897 -897 222 -897 -897 -897 -10 -897 148 148 -897 -10 -897 181 -897 -897 -897 -51 -897 190 -897 107 -10 -10 -897 -897 222 -897 -897 148 -897 -897 -51 -897 -897 222 -897 -897 -897 -897 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGARTAGAAACMCWGACTAAGACAGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 5 E= 2.7e-001 0.000000 0.000000 0.400000 0.600000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.200000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.600000 0.000000 0.200000 0.200000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.200000 0.800000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.600000 0.200000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCAGGARTAGAAACMCWGACTAAGACAGT MEME-4 regular expression -------------------------------------------------------------------------------- [TG][GA]C[AT]G[GC]A[AG]T[AC][GA][AGT]A[AC]C[CA][CA][TA][GC][AG]C[TC][AG]A[GA][ACG]C[AT]GT -------------------------------------------------------------------------------- Time 1817.37 secs. ******************************************************************************** ******************************************************************************** MOTIF ASRCASASAGABASAGAGRSWGABABMDAK MEME-5 width = 30 sites = 19 llr = 315 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ASRCASASAGABASAGAGRSWGABABMDAK MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:4282a2927:a:628:415:8:7:535: pos.-specific C :327:4:3:2:4:4:1:2:321:5:33112 probability G :53124:51513:6152656:8:3:41323 matrix T :22::1:::223::32121:3223342325 bits 2.2 2.0 1.8 * * * 1.6 * * * * Relative 1.3 * * * * ** * Entropy 1.1 * * * * ** ** (23.9 bits) 0.9 * ** * * ** ** * ** * 0.7 ** ** *** * *** **** **** 0.4 ** ****** **************** * 0.2 ** *************************** 0.0 ------------------------------ Multilevel AGACACAGAGACAGAGAGGGAGACAGAAAT consensus CGA G C T G CTT TACT TGTTCGGG sequence A T T CTT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASRCASASAGABASAGAGRSWGABABMDAK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr7:117930874-117930974 - 29 3.36e-14 TGGGGACATA AGTCAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAG chr5:18086986-18087086 - 1 3.59e-13 ACACACACAC ACACACACACACAGAGAGAGAGAGAGAGAG chr2:135029150-135029250 - 1 3.59e-13 GCAGGGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG chr14:38684444-38684544 + 26 4.68e-12 TGGAGAATGA AGTCAGAGAGACAGAGATGGAGACATATGC ACAGAGGGAA chr1:107672567-107672667 + 42 2.97e-11 acacacacac acacacacacacacaGAGGGAGACACTTTT CAtatgatca chr18:70028755-70028855 - 40 2.58e-10 GGAGGGAGGG AGGGAGAGAGAGAGAGAGGGTGAGTTTGCT TACGTGTCAT chr18:45993437-45993537 - 6 1.02e-09 CACAGTCAGA AGGCAGAGAGGGAGGGATGCTGACTGCTAG GCAGC chr15:70979455-70979555 + 70 2.01e-09 TTTCAACCCC AGACAGAGATATAGAAGGAGTGACTTTAAC A chr9:40246591-40246691 + 8 2.48e-08 TGTCGTT ATACACAGAGACAGTTGCGCCGTTACAAAT GATAATCTAT chr14:95981720-95981820 + 14 2.48e-08 GGTACCAAGG ACCAGAAGATACAGAGAGTGAGTCATTGAT GCTGAATCAG chr10:90609231-90609331 - 6 4.74e-08 CCAAGGGTGG AGTCACAGACTCAGTGATGATGACATGGGT GACTA chr18:84497866-84497966 - 45 6.91e-08 TGAAAATTTT AGCAGCACAGAGAGTTACAGCGATAGCATG CACTTGTCAT chr6:66936373-66936473 - 65 9.88e-08 CCACAG ACACACACAGACACTCACACACATTCATGT CACTGTCATG chr11:46190071-46190171 + 34 1.48e-07 catgcttgag aggcaaacatttactgaggaagtcacctcc cACTTCCTGG chr17:51562210-51562310 + 20 1.68e-07 TCCAAAGAAC AGGAAGAAAAATACGAAGGGCGTGTGAAGT CTGTAACACT chr10:7078193-7078293 - 71 2.30e-07 . ACACACAAATTTACACGGGCATACACACAC ACACAGACAA chr4:104663183-104663283 + 3 4.29e-07 GG ATACACAAAAGGAGAATGAGTTATAGCAAT CGCGAGCCAA chr4:50110390-50110490 - 6 6.44e-07 TAAATAATAT ATGCATAGGAATACATATACATACATATAT ACATA chr5:48517887-48517987 - 31 7.43e-07 AGACCTCTTA ACCAGAAAAGATACATAGTCTGATTTCATG GTTTGGTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASRCASASAGABASAGAGRSWGABABMDAK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:117930874-117930974 3.4e-14 28_[-5]_42 chr5:18086986-18087086 3.6e-13 [-5]_70 chr2:135029150-135029250 3.6e-13 [-5]_70 chr14:38684444-38684544 4.7e-12 25_[+5]_45 chr1:107672567-107672667 3e-11 41_[+5]_29 chr18:70028755-70028855 2.6e-10 39_[-5]_31 chr18:45993437-45993537 1e-09 5_[-5]_65 chr15:70979455-70979555 2e-09 69_[+5]_1 chr9:40246591-40246691 2.5e-08 7_[+5]_63 chr14:95981720-95981820 2.5e-08 13_[+5]_57 chr10:90609231-90609331 4.7e-08 5_[-5]_65 chr18:84497866-84497966 6.9e-08 44_[-5]_26 chr6:66936373-66936473 9.9e-08 64_[-5]_6 chr11:46190071-46190171 1.5e-07 33_[+5]_37 chr17:51562210-51562310 1.7e-07 19_[+5]_51 chr10:7078193-7078293 2.3e-07 70_[-5] chr4:104663183-104663283 4.3e-07 2_[+5]_68 chr4:50110390-50110490 6.4e-07 5_[-5]_65 chr5:48517887-48517987 7.4e-07 30_[-5]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASRCASASAGABASAGAGRSWGABABMDAK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ASRCASASAGABASAGAGRSWGABABMDAK width=30 seqs=19 chr7:117930874-117930974 ( 29) AGTCAGAGAGAGAGAGAGAGAGAGAGAGAG 1 chr5:18086986-18087086 ( 1) ACACACACACACAGAGAGAGAGAGAGAGAG 1 chr2:135029150-135029250 ( 1) AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 1 chr14:38684444-38684544 ( 26) AGTCAGAGAGACAGAGATGGAGACATATGC 1 chr1:107672567-107672667 ( 42) ACACACACACACACAGAGGGAGACACTTTT 1 chr18:70028755-70028855 ( 40) AGGGAGAGAGAGAGAGAGGGTGAGTTTGCT 1 chr18:45993437-45993537 ( 6) AGGCAGAGAGGGAGGGATGCTGACTGCTAG 1 chr15:70979455-70979555 ( 70) AGACAGAGATATAGAAGGAGTGACTTTAAC 1 chr9:40246591-40246691 ( 8) ATACACAGAGACAGTTGCGCCGTTACAAAT 1 chr14:95981720-95981820 ( 14) ACCAGAAGATACAGAGAGTGAGTCATTGAT 1 chr10:90609231-90609331 ( 6) AGTCACAGACTCAGTGATGATGACATGGGT 1 chr18:84497866-84497966 ( 45) AGCAGCACAGAGAGTTACAGCGATAGCATG 1 chr6:66936373-66936473 ( 65) ACACACACAGACACTCACACACATTCATGT 1 chr11:46190071-46190171 ( 34) AGGCAAACATTTACTGAGGAAGTCACCTCC 1 chr17:51562210-51562310 ( 20) AGGAAGAAAAATACGAAGGGCGTGTGAAGT 1 chr10:7078193-7078293 ( 71) ACACACAAATTTACACGGGCATACACACAC 1 chr4:104663183-104663283 ( 3) ATACACAAAAGGAGAATGAGTTATAGCAAT 1 chr4:50110390-50110490 ( 6) ATGCATAGGAATACATATACATACATATAT 1 chr5:48517887-48517987 ( 31) ACCAGAAAAGATACATAGTCTGATTTCATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASRCASASAGABASAGAGRSWGABABMDAK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.0277 E= 1.2e-003 181 -1089 -1089 -1089 -1089 56 130 -85 56 -44 30 -85 -44 167 -103 -1089 156 -1089 -44 -1089 -85 97 78 -244 181 -1089 -1089 -1089 -44 30 130 -1089 173 -1089 -202 -1089 -85 -44 114 -44 137 -1089 -103 -85 -1089 78 56 14 181 -1089 -1089 -1089 -1089 78 156 -1089 114 -1089 -103 -12 -85 -103 130 -44 147 -1089 -44 -244 -1089 -44 156 -44 56 -1089 114 -144 -144 56 143 -1089 88 -44 -1089 14 -1089 -202 188 -85 147 -1089 -1089 -44 -1089 114 30 -12 126 -1089 -1089 14 -1089 30 78 37 73 30 -202 -44 14 -202 56 14 88 -103 -3 -85 -1089 -3 56 73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASRCASASAGABASAGAGRSWGABABMDAK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 19 E= 1.2e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.315789 0.526316 0.157895 0.421053 0.157895 0.263158 0.157895 0.210526 0.684211 0.105263 0.000000 0.842105 0.000000 0.157895 0.000000 0.157895 0.421053 0.368421 0.052632 1.000000 0.000000 0.000000 0.000000 0.210526 0.263158 0.526316 0.000000 0.947368 0.000000 0.052632 0.000000 0.157895 0.157895 0.473684 0.210526 0.736842 0.000000 0.105263 0.157895 0.000000 0.368421 0.315789 0.315789 1.000000 0.000000 0.000000 0.000000 0.000000 0.368421 0.631579 0.000000 0.631579 0.000000 0.105263 0.263158 0.157895 0.105263 0.526316 0.210526 0.789474 0.000000 0.157895 0.052632 0.000000 0.157895 0.631579 0.210526 0.421053 0.000000 0.473684 0.105263 0.105263 0.315789 0.578947 0.000000 0.526316 0.157895 0.000000 0.315789 0.000000 0.052632 0.789474 0.157895 0.789474 0.000000 0.000000 0.210526 0.000000 0.473684 0.263158 0.263158 0.684211 0.000000 0.000000 0.315789 0.000000 0.263158 0.368421 0.368421 0.473684 0.263158 0.052632 0.210526 0.315789 0.052632 0.315789 0.315789 0.526316 0.105263 0.210526 0.157895 0.000000 0.210526 0.315789 0.473684 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ASRCASASAGABASAGAGRSWGABABMDAK MEME-5 regular expression -------------------------------------------------------------------------------- A[GC][AG][CA]A[CG]A[GCA]A[GT]A[CGT]A[GC][AT][GT]A[GT][GA][GC][AT]G[AT][CGT][AT][GTC][ACT][AGT][AG][TGC] -------------------------------------------------------------------------------- Time 2248.60 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAGC MEME-6 width = 6 sites = 75 llr = 650 E-value = 1.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAGC MEME-6 Description -------------------------------------------------------------------------------- Simplified A :a:a:: pos.-specific C a:a::a probability G ::::a: matrix T :::::: bits 2.2 * * ** 2.0 * * ** 1.8 ****** 1.6 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.5 bits) 0.9 ****** 0.7 ****** 0.4 ****** 0.2 ****** 0.0 ------ Multilevel CACAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------ chr16:29331268-29331368 - 81 1.72e-04 TGGCAAGCAT CACAGC ACTTGCCTAC chr9:86010192-86010292 + 10 1.72e-04 TGTGAAGGC CACAGC ATCCTGAGCT chr9:36941983-36942083 + 53 1.72e-04 GAGCAGAGAA CACAGC TTTCCTGGCA chr18:45646011-45646111 - 60 1.72e-04 GGTGGATGTT CACAGC CATCCATTGG chr17:80809223-80809323 - 85 1.72e-04 TCATCTGAGA CACAGC GGACACCCAC chr9:31559477-31559577 + 79 1.72e-04 TACAGGCGCA CACAGC TTCATCTCCC chr5:38372251-38372351 + 80 1.72e-04 TCTTAAAGCA CACAGC CATGTGTTCC chr6:66936373-66936473 - 12 1.72e-04 TATACAGTCT CACAGC ACCAATTCTG chr8:23822306-23822406 + 17 1.72e-04 acgagcattg cacagc tagctctata chr6:117718409-117718509 - 17 1.72e-04 ACTGAACAAG CACAGC CGGTACACTG chr2:168403011-168403111 + 43 1.72e-04 ACTCAGAACA CACAGC AGTGGGAGCT chr13:93419780-93419880 - 29 1.72e-04 ATTGCTACCT CACAGC AGGCAGAGCT chr10:54290102-54290202 + 11 1.72e-04 TGACTACACC CACAGC ATATGAACAA chr11:32112986-32113086 + 79 1.72e-04 ACCTCCCCCT CACAGC CTAATGACAT chr6:146270979-146271079 + 73 1.72e-04 AATGGCATTG CACAGC ACGTGACTTG chr17:70598359-70598459 + 61 1.72e-04 TATTTAAGAA CACAGC AATATACATC chr14:106041513-10604161 - 44 1.72e-04 TTATCTACAG CACAGC CATGCTCTTT chr13:80408891-80408991 - 88 1.72e-04 ATCACAA CACAGC TATAAATCCT chr14:25127510-25127610 + 82 1.72e-04 AGCCCACACA CACAGC TTGGAGGATT chr16:54797183-54797283 - 56 1.72e-04 CTGAACTATT CACAGC AGCTAAGAAG chr9:49758497-49758597 - 7 1.72e-04 TTTTACTGCA CACAGC TGCCAG chr12:70713828-70713928 - 68 1.72e-04 GGAACGCTCC CACAGC CGAGGAAGCT chr11:18681559-18681659 - 57 1.72e-04 TCGGTAGTCA CACAGC AGTGATGACT chr10:32602706-32602806 - 28 1.72e-04 CCCTGTGAGT CACAGC AACTGAAGCA chr3:127107323-127107423 - 28 1.72e-04 CTGCCAGGGG CACAGC TTTCAGGAAG chr15:64446361-64446461 + 45 1.72e-04 TGCCCTGACT CACAGC AGCTGAGCCC chr15:38596359-38596459 + 46 1.72e-04 CTTATCACAG CACAGC ATGCCTACGC chr14:72807208-72807308 - 69 1.72e-04 AGGCATGAGT CACAGC GGACAGCTTT chr16:92952248-92952348 + 17 1.72e-04 ATTCTGGAAA CACAGC GAAATAGCCT chr6:139974595-139974695 - 38 1.72e-04 ATATGGTTTC CACAGC AACGAAGATC chr8:44410212-44410312 + 32 1.72e-04 GGTGGTGACT CACAGC GAGGTAAAGG chr18:66082113-66082213 + 37 1.72e-04 CTTGGAAACA CACAGC CAAGTGCTAC chr2:143018833-143018933 + 51 1.72e-04 CAACAGGATT CACAGC ACTGCAAGAC chr11:105795904-10579600 + 63 1.72e-04 GCCAGAGCAG CACAGC CAGAAATAGA chr2:41204322-41204422 + 10 1.72e-04 atcaacaga cacagc agttctcttc chr14:96430643-96430743 + 54 1.72e-04 CAACCATCCT CACAGC ACCGGCTTGG chr8:32792761-32792861 + 38 1.72e-04 GCCAGACATC CACAGC AGGCACCAGA chr2:5249993-5250093 - 76 1.72e-04 AGAGCTAGTT CACAGC CAGCTTGGAG chr6:38785825-38785925 + 49 1.72e-04 AAATGCCTCC CACAGC TCCTTGTACA chr2:7559406-7559506 - 72 1.72e-04 TACAGAGATC CACAGC CAGGCATTAT chr15:64244413-64244513 + 7 1.72e-04 GATCTT CACAGC CACTAATGTT chr11:56889528-56889628 + 31 1.72e-04 GTCCATCCCC CACAGC AAAGTAACAC chr6:37419546-37419646 + 58 1.72e-04 CGCCTACACC CACAGC CACCACGCAT chr1:151098701-151098801 - 14 1.72e-04 AATCAGAGTA CACAGC ACTCCAGAAT chr17:27762854-27762954 - 88 1.72e-04 ACTGGAT CACAGC CGGAGCCTCT chr2:58419519-58419619 - 9 1.72e-04 GGCCCCACAT CACAGC GTGGGGTG chr1:125239526-125239626 + 54 1.72e-04 CCCTCTAGGC CACAGC ATTCTCTCCT chr19:5802405-5802505 - 23 1.72e-04 CGTAGAGCAG CACAGC TGAGCTCGTG chr15:18844335-18844435 + 49 1.72e-04 TATTTAAAAT CACAGC TCAGCCTGCA chr14:115821600-11582170 + 61 1.72e-04 CTAGGACTGT CACAGC GGCCGCACCA chrX:68294614-68294714 - 85 1.72e-04 AGGGGTGTGA CACAGC AATTCCATTT chrX:94689636-94689736 - 57 1.72e-04 CCCAGCAAAG CACAGC CAAGTACAAT chr15:36765273-36765373 - 87 1.72e-04 AGCAAACC CACAGC AAGGCCTTAG chr13:88074127-88074227 - 72 1.72e-04 CTTCAACATT CACAGC CCTAAGTGTG chr3:82275401-82275501 + 36 1.72e-04 GATGCAGAAG CACAGC TTACCCTTGA chr14:61648585-61648685 + 86 1.72e-04 GGGCCGGCTC CACAGC TGTCCCTGC chr18:29573960-29574060 - 2 1.72e-04 GCTGGTACAC CACAGC A chr13:6179055-6179155 - 22 1.72e-04 TCTATGAGAG CACAGC CACACTTGAA chr8:12031785-12031885 + 30 1.72e-04 TAAGGCACCA CACAGC AGAGCTGGAA chr10:112372970-11237307 + 50 1.72e-04 ATCCCCAAGG CACAGC TATCCTTAGA chr4:48771802-48771902 - 8 1.72e-04 GAGCTGGCGA CACAGC CTTCCTG chr1:180434068-180434168 + 14 1.72e-04 GAGCCTCCCT CACAGC ACAGGGAGTG chr3:114544267-114544367 + 20 1.72e-04 CAGACACAAT CACAGC AAAGCAGGCA chrX:11887581-11887681 + 31 1.72e-04 ACAGGCGAAG CACAGC AGTCATTATC chr9:49989793-49989893 - 56 1.72e-04 CTGTCTCATG CACAGC AGGGATTCAG chr13:54855848-54855948 + 45 1.72e-04 GAGAAGGGAA CACAGC CGTGCTAAGC chr12:9952219-9952319 - 45 1.72e-04 TTAAAGGGAA CACAGC TTTAAAGGCA chr5:47820789-47820889 - 61 1.72e-04 CAAGTTGGCC CACAGC TACCTTCCTC chr13:89404462-89404562 - 50 1.72e-04 TCAGTATCTC CACAGC TCCCAGGGAC chr18:77985724-77985824 + 56 1.72e-04 tataagcaag cacagc agtgcactgt chr3:150291177-150291277 + 57 1.72e-04 TGGAATAAGC CACAGC AATGTAAATC chr16:72027629-72027729 - 26 1.72e-04 GCGATGCAGG CACAGC CCTCCAACTT chr10:63886608-63886708 + 1 1.72e-04 . CACAGC GCAAGTGGAG chr8:28148604-28148704 + 58 1.72e-04 GGAAGACAGA CACAGC TTCAAAAGCA chr8:125133575-125133675 + 25 1.72e-04 CCTTGTTGAA CACAGC CTGCAGGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:29331268-29331368 0.00017 80_[-6]_14 chr9:86010192-86010292 0.00017 9_[+6]_85 chr9:36941983-36942083 0.00017 52_[+6]_42 chr18:45646011-45646111 0.00017 59_[-6]_35 chr17:80809223-80809323 0.00017 84_[-6]_10 chr9:31559477-31559577 0.00017 78_[+6]_16 chr5:38372251-38372351 0.00017 79_[+6]_15 chr6:66936373-66936473 0.00017 11_[-6]_83 chr8:23822306-23822406 0.00017 16_[+6]_78 chr6:117718409-117718509 0.00017 16_[-6]_78 chr2:168403011-168403111 0.00017 42_[+6]_52 chr13:93419780-93419880 0.00017 28_[-6]_66 chr10:54290102-54290202 0.00017 10_[+6]_84 chr11:32112986-32113086 0.00017 78_[+6]_16 chr6:146270979-146271079 0.00017 72_[+6]_22 chr17:70598359-70598459 0.00017 60_[+6]_34 chr14:106041513-10604161 0.00017 43_[-6]_51 chr13:80408891-80408991 0.00017 87_[-6]_7 chr14:25127510-25127610 0.00017 81_[+6]_13 chr16:54797183-54797283 0.00017 55_[-6]_39 chr9:49758497-49758597 0.00017 6_[-6]_88 chr12:70713828-70713928 0.00017 67_[-6]_27 chr11:18681559-18681659 0.00017 56_[-6]_38 chr10:32602706-32602806 0.00017 27_[-6]_67 chr3:127107323-127107423 0.00017 27_[-6]_67 chr15:64446361-64446461 0.00017 44_[+6]_50 chr15:38596359-38596459 0.00017 45_[+6]_49 chr14:72807208-72807308 0.00017 68_[-6]_26 chr16:92952248-92952348 0.00017 16_[+6]_78 chr6:139974595-139974695 0.00017 37_[-6]_57 chr8:44410212-44410312 0.00017 31_[+6]_63 chr18:66082113-66082213 0.00017 36_[+6]_58 chr2:143018833-143018933 0.00017 50_[+6]_44 chr11:105795904-10579600 0.00017 62_[+6]_32 chr2:41204322-41204422 0.00017 9_[+6]_85 chr14:96430643-96430743 0.00017 53_[+6]_41 chr8:32792761-32792861 0.00017 37_[+6]_57 chr2:5249993-5250093 0.00017 75_[-6]_19 chr6:38785825-38785925 0.00017 48_[+6]_46 chr2:7559406-7559506 0.00017 71_[-6]_23 chr15:64244413-64244513 0.00017 6_[+6]_88 chr11:56889528-56889628 0.00017 30_[+6]_64 chr6:37419546-37419646 0.00017 57_[+6]_37 chr1:151098701-151098801 0.00017 13_[-6]_81 chr17:27762854-27762954 0.00017 87_[-6]_7 chr2:58419519-58419619 0.00017 8_[-6]_86 chr1:125239526-125239626 0.00017 53_[+6]_41 chr19:5802405-5802505 0.00017 22_[-6]_72 chr15:18844335-18844435 0.00017 48_[+6]_46 chr14:115821600-11582170 0.00017 60_[+6]_34 chrX:68294614-68294714 0.00017 84_[-6]_10 chrX:94689636-94689736 0.00017 56_[-6]_38 chr15:36765273-36765373 0.00017 86_[-6]_8 chr13:88074127-88074227 0.00017 71_[-6]_23 chr3:82275401-82275501 0.00017 35_[+6]_59 chr14:61648585-61648685 0.00017 85_[+6]_9 chr18:29573960-29574060 0.00017 1_[-6]_93 chr13:6179055-6179155 0.00017 21_[-6]_73 chr8:12031785-12031885 0.00017 29_[+6]_65 chr10:112372970-11237307 0.00017 49_[+6]_45 chr4:48771802-48771902 0.00017 7_[-6]_87 chr1:180434068-180434168 0.00017 13_[+6]_81 chr3:114544267-114544367 0.00017 19_[+6]_75 chrX:11887581-11887681 0.00017 30_[+6]_64 chr9:49989793-49989893 0.00017 55_[-6]_39 chr13:54855848-54855948 0.00017 44_[+6]_50 chr12:9952219-9952319 0.00017 44_[-6]_50 chr5:47820789-47820889 0.00017 60_[-6]_34 chr13:89404462-89404562 0.00017 49_[-6]_45 chr18:77985724-77985824 0.00017 55_[+6]_39 chr3:150291177-150291277 0.00017 56_[+6]_38 chr16:72027629-72027729 0.00017 25_[-6]_69 chr10:63886608-63886708 0.00017 [+6]_94 chr8:28148604-28148704 0.00017 57_[+6]_37 chr8:125133575-125133675 0.00017 24_[+6]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAGC width=6 seqs=75 chr16:29331268-29331368 ( 81) CACAGC 1 chr9:86010192-86010292 ( 10) CACAGC 1 chr9:36941983-36942083 ( 53) CACAGC 1 chr18:45646011-45646111 ( 60) CACAGC 1 chr17:80809223-80809323 ( 85) CACAGC 1 chr9:31559477-31559577 ( 79) CACAGC 1 chr5:38372251-38372351 ( 80) CACAGC 1 chr6:66936373-66936473 ( 12) CACAGC 1 chr8:23822306-23822406 ( 17) CACAGC 1 chr6:117718409-117718509 ( 17) CACAGC 1 chr2:168403011-168403111 ( 43) CACAGC 1 chr13:93419780-93419880 ( 29) CACAGC 1 chr10:54290102-54290202 ( 11) CACAGC 1 chr11:32112986-32113086 ( 79) CACAGC 1 chr6:146270979-146271079 ( 73) CACAGC 1 chr17:70598359-70598459 ( 61) CACAGC 1 chr14:106041513-10604161 ( 44) CACAGC 1 chr13:80408891-80408991 ( 88) CACAGC 1 chr14:25127510-25127610 ( 82) CACAGC 1 chr16:54797183-54797283 ( 56) CACAGC 1 chr9:49758497-49758597 ( 7) CACAGC 1 chr12:70713828-70713928 ( 68) CACAGC 1 chr11:18681559-18681659 ( 57) CACAGC 1 chr10:32602706-32602806 ( 28) CACAGC 1 chr3:127107323-127107423 ( 28) CACAGC 1 chr15:64446361-64446461 ( 45) CACAGC 1 chr15:38596359-38596459 ( 46) CACAGC 1 chr14:72807208-72807308 ( 69) CACAGC 1 chr16:92952248-92952348 ( 17) CACAGC 1 chr6:139974595-139974695 ( 38) CACAGC 1 chr8:44410212-44410312 ( 32) CACAGC 1 chr18:66082113-66082213 ( 37) CACAGC 1 chr2:143018833-143018933 ( 51) CACAGC 1 chr11:105795904-10579600 ( 63) CACAGC 1 chr2:41204322-41204422 ( 10) CACAGC 1 chr14:96430643-96430743 ( 54) CACAGC 1 chr8:32792761-32792861 ( 38) CACAGC 1 chr2:5249993-5250093 ( 76) CACAGC 1 chr6:38785825-38785925 ( 49) CACAGC 1 chr2:7559406-7559506 ( 72) CACAGC 1 chr15:64244413-64244513 ( 7) CACAGC 1 chr11:56889528-56889628 ( 31) CACAGC 1 chr6:37419546-37419646 ( 58) CACAGC 1 chr1:151098701-151098801 ( 14) CACAGC 1 chr17:27762854-27762954 ( 88) CACAGC 1 chr2:58419519-58419619 ( 9) CACAGC 1 chr1:125239526-125239626 ( 54) CACAGC 1 chr19:5802405-5802505 ( 23) CACAGC 1 chr15:18844335-18844435 ( 49) CACAGC 1 chr14:115821600-11582170 ( 61) CACAGC 1 chrX:68294614-68294714 ( 85) CACAGC 1 chrX:94689636-94689736 ( 57) CACAGC 1 chr15:36765273-36765373 ( 87) CACAGC 1 chr13:88074127-88074227 ( 72) CACAGC 1 chr3:82275401-82275501 ( 36) CACAGC 1 chr14:61648585-61648685 ( 86) CACAGC 1 chr18:29573960-29574060 ( 2) CACAGC 1 chr13:6179055-6179155 ( 22) CACAGC 1 chr8:12031785-12031885 ( 30) CACAGC 1 chr10:112372970-11237307 ( 50) CACAGC 1 chr4:48771802-48771902 ( 8) CACAGC 1 chr1:180434068-180434168 ( 14) CACAGC 1 chr3:114544267-114544367 ( 20) CACAGC 1 chrX:11887581-11887681 ( 31) CACAGC 1 chr9:49989793-49989893 ( 56) CACAGC 1 chr13:54855848-54855948 ( 45) CACAGC 1 chr12:9952219-9952319 ( 45) CACAGC 1 chr5:47820789-47820889 ( 61) CACAGC 1 chr13:89404462-89404562 ( 50) CACAGC 1 chr18:77985724-77985824 ( 56) CACAGC 1 chr3:150291177-150291277 ( 57) CACAGC 1 chr16:72027629-72027729 ( 26) CACAGC 1 chr10:63886608-63886708 ( 1) CACAGC 1 chr8:28148604-28148704 ( 58) CACAGC 1 chr8:125133575-125133675 ( 25) CACAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 6 n= 57000 bayes= 9.74824 E= 1.5e-001 -1287 222 -1287 -1287 181 -1287 -1287 -1287 -1287 222 -1287 -1287 181 -1287 -1287 -1287 -1287 -1287 222 -1287 -1287 222 -1287 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 6 nsites= 75 E= 1.5e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGC MEME-6 regular expression -------------------------------------------------------------------------------- CACAGC -------------------------------------------------------------------------------- Time 2676.72 secs. ******************************************************************************** ******************************************************************************** MOTIF SAGWGSCAGSA MEME-7 width = 11 sites = 89 llr = 787 E-value = 3.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGWGSCAGSA MEME-7 Description -------------------------------------------------------------------------------- Simplified A :8:621:a128 pos.-specific C 612::38::31 probability G 4:8:762:951 matrix T :1:4::::::: bits 2.2 2.0 1.8 ** 1.6 * ** Relative 1.3 * * *** Entropy 1.1 *** * *** (12.8 bits) 0.9 *** * *** * 0.7 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CAGAGGCAGGA consensus G CTAC C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGWGSCAGSA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr10:4113257-4113357 - 71 2.75e-07 TGGGTGCAGC GAGAGGCAGGA ATGATGTGTG chr4:83841932-83842032 - 17 9.63e-07 CAGCATCACT GAGAGGCAGCA TCACTGAGAA chr4:101692853-101692953 - 64 1.70e-06 ATGAGGAAAA CAGAGCCAGCA AATGCTCTGG chr6:38785825-38785925 + 29 1.70e-06 GTGAGCAGCA CAGTGCCAGGA AATGCCTCCC chr8:25139161-25139261 - 58 2.48e-06 TTTCACCAGG CAGAGGGAGGA CAGGGGTGGA chrX:167149360-167149460 - 88 3.04e-06 TT CAGAGGCAGGC TCTTGCAGTG chr8:82693048-82693148 - 16 3.04e-06 AGAAGTCAGT GAGTGCCAGGA AGGGAAAGAG chr4:28298889-28298989 - 1 3.04e-06 GTCCTTGGAG CAGAGGCAGGC chrX:39250068-39250168 - 39 3.04e-06 GAGGCATTTT CAGTGGCAGAA CAAAAAATTT chr13:95086034-95086134 + 19 4.78e-06 TCATCTCCTC CAGAAGCAGCA GAAAGTGTGG chr2:135029150-135029250 - 67 4.78e-06 CTGAGTGTGT GAGAGGGAGGA GGAGAAGGGG chr18:84289503-84289603 - 8 5.77e-06 GCTTAGGATG CTGAGGCAGGA GGATGAG chr9:87633695-87633795 + 53 6.99e-06 TGAGAAAAAT CAGTGCCAGAA GAAAAAAAAA chr3:149085798-149085898 - 26 6.99e-06 GCTGAATTCA GACAGGCAGCA CCCACACAAG chr11:81065392-81065492 - 14 8.19e-06 TCAATGGGGT CACAGGCAGAA CGCCAAAGCA chr13:10019047-10019147 + 56 8.19e-06 caagaatggt gagaagcagca catgcagatt chr3:108995439-108995539 + 85 8.19e-06 TCCCAAGGAT GAGAGACAGGA GAGAA chr14:96430643-96430743 + 14 8.19e-06 CCTGGTAGAA CACAGGCAGAA TATTCCTAAA chr1:125239526-125239626 - 66 8.19e-06 TAGATTGGTG GAGAGACAGGA GAGAATGCTG chr6:31160197-31160297 - 44 1.01e-05 GAGAGCTCCC GAGAGGCAGGG AAATGGGAAG chr11:35262533-35262633 + 80 1.01e-05 TGTGCACTGG CACTGCCAGGA GCTGAGAGAT chr1:41390055-41390155 + 69 1.01e-05 GTTCACAGAT CAGTAGCAGCA GCAGGCTTGC chr13:102395039-10239513 + 7 1.01e-05 ctttaa cagaagcagaa atgactcaaa chr2:82113112-82113212 + 15 1.01e-05 GAGGCAGCAG CACTGCCAGGA ACTTGATGCC chr19:5802405-5802505 - 5 1.01e-05 AGCTGAGCTC GTGAGGCAGGA GACT chr4:6760377-6760477 + 7 1.01e-05 TGGTTT CCGAGGCAGGA TCTCTATGCT chr6:46696159-46696259 + 33 1.01e-05 ATCTAAAGTG CAGAGACAGCA GTTTTTGGAA chr14:21099315-21099415 + 12 1.16e-05 TTAGCTTTAC GAGTGGCAGGC GGTGTTTTCG chr9:36941983-36942083 - 61 1.57e-05 GAAGTGTACA GACTGCCAGGA AAGCTGTGTT chr2:46400064-46400164 - 82 1.57e-05 TGATTAGA GAGAAGCAGAA AGTGTGGAGG chr11:74554656-74554756 - 43 1.57e-05 ATTATTCCCA GAGTAGCAGCA CCTGGGCTGA chr13:42403206-42403306 - 57 1.57e-05 AAAACAATGT GAGAAGCAGAA CTAGGTCTGG chr16:89757375-89757475 + 63 1.57e-05 TACAGAGAAT GACTGCCAGGA AGAAAGTCTG chr6:107692052-107692152 - 56 1.84e-05 TGTGTATGTG CAGAGCCAAGA TTAGCCTCAA chr2:92790324-92790424 + 28 1.84e-05 AGAAGTGTGG GTGAGGCAGCA AACAGTCACA chr16:12014656-12014756 - 3 2.09e-05 GTGAATGTGT CTGAGGCAGAA GC chr3:78698871-78698971 + 52 2.09e-05 GGCATGTGGC CAGAACCAGAA GGCAGCCGCT chr13:54855848-54855948 - 8 2.09e-05 GGCTCAGCTC CAGAGGCAGAG ACGGCTT chr16:79876746-79876846 - 34 2.28e-05 CATTTCCCTA CACAAGCAGCA TCAATATATA chr15:95022589-95022689 + 34 2.28e-05 GGTGGCAGAG CAGTGCCAGGG AACACATTGA chr18:29206462-29206562 - 30 2.48e-05 CAGGTGAGCC GACAGGCAGGC CTTATGCTGC chr13:6178443-6178543 + 48 2.48e-05 TCAAAATACA CACTGGGAGGA TGGAGCTTGC chr13:103048899-10304899 - 13 2.79e-05 CACACTGATG GAGAGCCAAGA AGCATAAGTA chr18:35346589-35346689 + 6 3.15e-05 CCAGG CAGTGCCAAGA GCACTCTCTG chr2:3958293-3958393 - 50 3.15e-05 ATCTCTGCAG CAGAAGCAGCC ACCTACCCAC chr8:45586924-45587024 + 47 3.15e-05 CTCTGGTCTC CACTGCCAGAA TCTGACTCAT chr13:91937201-91937301 + 71 3.48e-05 agatgtgact cagtggcagag tgcctgccag chr1:127251485-127251585 - 41 3.48e-05 GTAGGAAGAC GTGTGCCAGGA GCCCTACATG chr16:92591226-92591326 + 10 3.48e-05 TGTAGGTCT CAGAACCAGGC CTCTCAAAAC chr3:78166855-78166955 - 82 3.48e-05 ATCATTTC CAGAGGGAGCC TGTTAACAAG chr15:53591449-53591549 - 75 3.48e-05 CAGAAGACAA CACAGGCAAGA TCTGAGAGAG chr15:36765273-36765373 - 19 3.82e-05 GCTCAGAGTT CTGTGCCAGCA GCGTCTCCCT chr3:115660963-115661063 - 25 3.82e-05 GCCCTCAGGC CTGTGCCAGCA CCAAGAAGGA chr1:94183806-94183906 - 73 3.82e-05 TCAATTAAAA CACAGACAGCA AGGAGACCAT chr3:159049665-159049765 + 87 4.21e-05 tatgtatttt cagaaacagca gat chr6:64588730-64588830 - 78 4.21e-05 TCTTAAGAGG CACTGGGAGCA TGACACAGAT chr12:29356974-29357074 - 68 4.21e-05 AGGCTTTCAG CAGAGGGAAGA GGCGCTGCTC chr9:31559477-31559577 - 58 4.73e-05 TGCGCCTGTA CAGAGGAAGGA ATATGCTGGC chr17:50470397-50470497 - 32 4.73e-05 TTTTCAGCTG CTGAGACAGGA AATGACGTGA chr1:140537067-140537167 + 52 4.73e-05 ATGAGTCTAT CAGTGGCAAAA TTTACAAGTC chr17:14370417-14370517 + 10 4.73e-05 ATCATAGAG GAGAAGCAGCC CTGGCAGAAG chr17:27762854-27762954 - 43 4.73e-05 AGCCCTGGTT CAGAAGGAGAA CATGTGATTG chr11:10562749-10562849 + 75 5.18e-05 ACACTCTCTT CAGTGCCAACA CCAAGTTAGG chr5:101365305-101365405 + 88 5.18e-05 AGCTAGCTGG GAGCGGCAGCA GA chr6:23700795-23700895 + 67 5.18e-05 acccagaaag cagtgggaggg cagctaccca chr13:92960039-92960139 + 9 6.16e-05 gtcaccat gacaaccagca gccatgaagc chr14:16741607-16741707 + 56 6.16e-05 ATACAGAGAT CAGTCCCAGGA ACAAGTTCCC chr10:32602706-32602806 - 77 6.16e-05 TGTGTCTTTG CAGAGTCAGGA GAGAGAAATG chr18:49009560-49009660 - 41 6.16e-05 CAAGTGCTCA GACTACCAGGA TCTCTATGCA chr2:116117848-116117948 - 23 6.16e-05 CTCATCAGCA GACAGGGAGAA CAGCCAACTT chr3:29710622-29710722 + 14 6.16e-05 GGTCTTGGAG CCCAGGCAGCA CATGAATTGG chr2:135353884-135353984 + 20 6.84e-05 tcttggtTTG GAGTAGcaggg ctctcagtat chr8:16613879-16613979 - 32 7.57e-05 CAGCTTCCAG CAGAGAGAGAA AGAGAGACAG chr14:72807208-72807308 + 36 7.57e-05 GCATTGCTAA CAGTGGAAGGA AATGTGTTTT chr3:16938327-16938427 - 45 7.57e-05 TAATGCCTCG GTGAACCAGGA GATGTGGCTT chr12:8452946-8453046 + 62 8.19e-05 gggcctagca cagagccaagc atataaatag chr7:68858376-68858476 + 54 8.19e-05 GAAGTAGGCA CAGTGACAGCC ATTGCTGCAG chr7:113915796-113915896 + 87 8.19e-05 GAATTCTACT CAGAGGGAGAG ACT chr8:32792761-32792861 + 50 8.19e-05 CAGCAGGCAC CAGACGGAGGA GCGCCTATTG chr13:113464115-11346421 - 64 8.19e-05 TCTTCCCAGG CAGCGGGAGGA GGGCAAGGGC chr4:66183791-66183891 + 58 9.62e-05 GAGATGAAAT GAGTAACAGCA ACAGCCAGCA chr6:54129557-54129657 + 43 9.62e-05 AGCTAAATTG GAGAGGGAACA GAGCCAGTCT chr14:118180169-11818026 + 9 1.15e-04 GCTCCGGT GAGAACGAGAA AGGAGCCAAG chr12:88841513-88841613 + 74 1.24e-04 TTCTTCTACC CACTAACAGGA AGATCAGGAG chr10:94662717-94662817 + 58 1.24e-04 TACTTCTTCT GCGTGCCAGAA GCAGAGTGAG chr5:42918568-42918668 + 88 1.68e-04 AGGAACAGAT GACGGGCAGGA AG chr4:104663183-104663283 + 34 2.08e-04 TATAGCAATC GCGAGCCAAGA TTTGCCTCTG chr1:120425518-120425618 + 50 2.37e-04 gggctttgca gtgacgcagca gctgcctttg chr4:40884582-40884682 - 81 3.10e-04 TTAGCTCTG GCGTGGGAGGC CTTAACTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGWGSCAGSA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:4113257-4113357 2.8e-07 70_[-7]_19 chr4:83841932-83842032 9.6e-07 16_[-7]_73 chr4:101692853-101692953 1.7e-06 63_[-7]_26 chr6:38785825-38785925 1.7e-06 28_[+7]_61 chr8:25139161-25139261 2.5e-06 57_[-7]_32 chrX:167149360-167149460 3e-06 87_[-7]_2 chr8:82693048-82693148 3e-06 15_[-7]_74 chr4:28298889-28298989 3e-06 [-7]_89 chrX:39250068-39250168 3e-06 38_[-7]_51 chr13:95086034-95086134 4.8e-06 18_[+7]_71 chr2:135029150-135029250 4.8e-06 66_[-7]_23 chr18:84289503-84289603 5.8e-06 7_[-7]_82 chr9:87633695-87633795 7e-06 52_[+7]_37 chr3:149085798-149085898 7e-06 25_[-7]_64 chr11:81065392-81065492 8.2e-06 13_[-7]_76 chr13:10019047-10019147 8.2e-06 55_[+7]_34 chr3:108995439-108995539 8.2e-06 84_[+7]_5 chr14:96430643-96430743 8.2e-06 13_[+7]_76 chr1:125239526-125239626 8.2e-06 65_[-7]_24 chr6:31160197-31160297 1e-05 43_[-7]_46 chr11:35262533-35262633 1e-05 79_[+7]_10 chr1:41390055-41390155 1e-05 68_[+7]_21 chr13:102395039-10239513 1e-05 6_[+7]_83 chr2:82113112-82113212 1e-05 14_[+7]_75 chr19:5802405-5802505 1e-05 4_[-7]_85 chr4:6760377-6760477 1e-05 6_[+7]_83 chr6:46696159-46696259 1e-05 32_[+7]_57 chr14:21099315-21099415 1.2e-05 11_[+7]_78 chr9:36941983-36942083 1.6e-05 60_[-7]_29 chr2:46400064-46400164 1.6e-05 81_[-7]_8 chr11:74554656-74554756 1.6e-05 42_[-7]_47 chr13:42403206-42403306 1.6e-05 56_[-7]_33 chr16:89757375-89757475 1.6e-05 62_[+7]_27 chr6:107692052-107692152 1.8e-05 55_[-7]_34 chr2:92790324-92790424 1.8e-05 27_[+7]_62 chr16:12014656-12014756 2.1e-05 2_[-7]_87 chr3:78698871-78698971 2.1e-05 51_[+7]_38 chr13:54855848-54855948 2.1e-05 7_[-7]_82 chr16:79876746-79876846 2.3e-05 33_[-7]_56 chr15:95022589-95022689 2.3e-05 33_[+7]_56 chr18:29206462-29206562 2.5e-05 29_[-7]_60 chr13:6178443-6178543 2.5e-05 47_[+7]_42 chr13:103048899-10304899 2.8e-05 12_[-7]_77 chr18:35346589-35346689 3.2e-05 5_[+7]_84 chr2:3958293-3958393 3.2e-05 49_[-7]_40 chr8:45586924-45587024 3.2e-05 46_[+7]_43 chr13:91937201-91937301 3.5e-05 70_[+7]_19 chr1:127251485-127251585 3.5e-05 40_[-7]_49 chr16:92591226-92591326 3.5e-05 9_[+7]_80 chr3:78166855-78166955 3.5e-05 81_[-7]_8 chr15:53591449-53591549 3.5e-05 74_[-7]_15 chr15:36765273-36765373 3.8e-05 18_[-7]_71 chr3:115660963-115661063 3.8e-05 24_[-7]_65 chr1:94183806-94183906 3.8e-05 72_[-7]_17 chr3:159049665-159049765 4.2e-05 86_[+7]_3 chr6:64588730-64588830 4.2e-05 77_[-7]_12 chr12:29356974-29357074 4.2e-05 67_[-7]_22 chr9:31559477-31559577 4.7e-05 57_[-7]_32 chr17:50470397-50470497 4.7e-05 31_[-7]_58 chr1:140537067-140537167 4.7e-05 51_[+7]_38 chr17:14370417-14370517 4.7e-05 9_[+7]_80 chr17:27762854-27762954 4.7e-05 42_[-7]_47 chr11:10562749-10562849 5.2e-05 74_[+7]_15 chr5:101365305-101365405 5.2e-05 87_[+7]_2 chr6:23700795-23700895 5.2e-05 66_[+7]_23 chr13:92960039-92960139 6.2e-05 8_[+7]_81 chr14:16741607-16741707 6.2e-05 55_[+7]_34 chr10:32602706-32602806 6.2e-05 76_[-7]_13 chr18:49009560-49009660 6.2e-05 40_[-7]_49 chr2:116117848-116117948 6.2e-05 22_[-7]_67 chr3:29710622-29710722 6.2e-05 13_[+7]_76 chr2:135353884-135353984 6.8e-05 19_[+7]_70 chr8:16613879-16613979 7.6e-05 31_[-7]_58 chr14:72807208-72807308 7.6e-05 35_[+7]_54 chr3:16938327-16938427 7.6e-05 44_[-7]_45 chr12:8452946-8453046 8.2e-05 61_[+7]_28 chr7:68858376-68858476 8.2e-05 53_[+7]_36 chr7:113915796-113915896 8.2e-05 86_[+7]_3 chr8:32792761-32792861 8.2e-05 49_[+7]_40 chr13:113464115-11346421 8.2e-05 63_[-7]_26 chr4:66183791-66183891 9.6e-05 57_[+7]_32 chr6:54129557-54129657 9.6e-05 42_[+7]_47 chr14:118180169-11818026 0.00012 8_[+7]_81 chr12:88841513-88841613 0.00012 73_[+7]_16 chr10:94662717-94662817 0.00012 57_[+7]_32 chr5:42918568-42918668 0.00017 87_[+7]_2 chr4:104663183-104663283 0.00021 33_[+7]_56 chr1:120425518-120425618 0.00024 49_[+7]_40 chr4:40884582-40884682 0.00031 80_[-7]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGWGSCAGSA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGWGSCAGSA width=11 seqs=89 chr10:4113257-4113357 ( 71) GAGAGGCAGGA 1 chr4:83841932-83842032 ( 17) GAGAGGCAGCA 1 chr4:101692853-101692953 ( 64) CAGAGCCAGCA 1 chr6:38785825-38785925 ( 29) CAGTGCCAGGA 1 chr8:25139161-25139261 ( 58) CAGAGGGAGGA 1 chrX:167149360-167149460 ( 88) CAGAGGCAGGC 1 chr8:82693048-82693148 ( 16) GAGTGCCAGGA 1 chr4:28298889-28298989 ( 1) CAGAGGCAGGC 1 chrX:39250068-39250168 ( 39) CAGTGGCAGAA 1 chr13:95086034-95086134 ( 19) CAGAAGCAGCA 1 chr2:135029150-135029250 ( 67) GAGAGGGAGGA 1 chr18:84289503-84289603 ( 8) CTGAGGCAGGA 1 chr9:87633695-87633795 ( 53) CAGTGCCAGAA 1 chr3:149085798-149085898 ( 26) GACAGGCAGCA 1 chr11:81065392-81065492 ( 14) CACAGGCAGAA 1 chr13:10019047-10019147 ( 56) GAGAAGCAGCA 1 chr3:108995439-108995539 ( 85) GAGAGACAGGA 1 chr14:96430643-96430743 ( 14) CACAGGCAGAA 1 chr1:125239526-125239626 ( 66) GAGAGACAGGA 1 chr6:31160197-31160297 ( 44) GAGAGGCAGGG 1 chr11:35262533-35262633 ( 80) CACTGCCAGGA 1 chr1:41390055-41390155 ( 69) CAGTAGCAGCA 1 chr13:102395039-10239513 ( 7) CAGAAGCAGAA 1 chr2:82113112-82113212 ( 15) CACTGCCAGGA 1 chr19:5802405-5802505 ( 5) GTGAGGCAGGA 1 chr4:6760377-6760477 ( 7) CCGAGGCAGGA 1 chr6:46696159-46696259 ( 33) CAGAGACAGCA 1 chr14:21099315-21099415 ( 12) GAGTGGCAGGC 1 chr9:36941983-36942083 ( 61) GACTGCCAGGA 1 chr2:46400064-46400164 ( 82) GAGAAGCAGAA 1 chr11:74554656-74554756 ( 43) GAGTAGCAGCA 1 chr13:42403206-42403306 ( 57) GAGAAGCAGAA 1 chr16:89757375-89757475 ( 63) GACTGCCAGGA 1 chr6:107692052-107692152 ( 56) CAGAGCCAAGA 1 chr2:92790324-92790424 ( 28) GTGAGGCAGCA 1 chr16:12014656-12014756 ( 3) CTGAGGCAGAA 1 chr3:78698871-78698971 ( 52) CAGAACCAGAA 1 chr13:54855848-54855948 ( 8) CAGAGGCAGAG 1 chr16:79876746-79876846 ( 34) CACAAGCAGCA 1 chr15:95022589-95022689 ( 34) CAGTGCCAGGG 1 chr18:29206462-29206562 ( 30) GACAGGCAGGC 1 chr13:6178443-6178543 ( 48) CACTGGGAGGA 1 chr13:103048899-10304899 ( 13) GAGAGCCAAGA 1 chr18:35346589-35346689 ( 6) CAGTGCCAAGA 1 chr2:3958293-3958393 ( 50) CAGAAGCAGCC 1 chr8:45586924-45587024 ( 47) CACTGCCAGAA 1 chr13:91937201-91937301 ( 71) CAGTGGCAGAG 1 chr1:127251485-127251585 ( 41) GTGTGCCAGGA 1 chr16:92591226-92591326 ( 10) CAGAACCAGGC 1 chr3:78166855-78166955 ( 82) CAGAGGGAGCC 1 chr15:53591449-53591549 ( 75) CACAGGCAAGA 1 chr15:36765273-36765373 ( 19) CTGTGCCAGCA 1 chr3:115660963-115661063 ( 25) CTGTGCCAGCA 1 chr1:94183806-94183906 ( 73) CACAGACAGCA 1 chr3:159049665-159049765 ( 87) CAGAAACAGCA 1 chr6:64588730-64588830 ( 78) CACTGGGAGCA 1 chr12:29356974-29357074 ( 68) CAGAGGGAAGA 1 chr9:31559477-31559577 ( 58) CAGAGGAAGGA 1 chr17:50470397-50470497 ( 32) CTGAGACAGGA 1 chr1:140537067-140537167 ( 52) CAGTGGCAAAA 1 chr17:14370417-14370517 ( 10) GAGAAGCAGCC 1 chr17:27762854-27762954 ( 43) CAGAAGGAGAA 1 chr11:10562749-10562849 ( 75) CAGTGCCAACA 1 chr5:101365305-101365405 ( 88) GAGCGGCAGCA 1 chr6:23700795-23700895 ( 67) CAGTGGGAGGG 1 chr13:92960039-92960139 ( 9) GACAACCAGCA 1 chr14:16741607-16741707 ( 56) CAGTCCCAGGA 1 chr10:32602706-32602806 ( 77) CAGAGTCAGGA 1 chr18:49009560-49009660 ( 41) GACTACCAGGA 1 chr2:116117848-116117948 ( 23) GACAGGGAGAA 1 chr3:29710622-29710722 ( 14) CCCAGGCAGCA 1 chr2:135353884-135353984 ( 20) GAGTAGCAGGG 1 chr8:16613879-16613979 ( 32) CAGAGAGAGAA 1 chr14:72807208-72807308 ( 36) CAGTGGAAGGA 1 chr3:16938327-16938427 ( 45) GTGAACCAGGA 1 chr12:8452946-8453046 ( 62) CAGAGCCAAGC 1 chr7:68858376-68858476 ( 54) CAGTGACAGCC 1 chr7:113915796-113915896 ( 87) CAGAGGGAGAG 1 chr8:32792761-32792861 ( 50) CAGACGGAGGA 1 chr13:113464115-11346421 ( 64) CAGCGGGAGGA 1 chr4:66183791-66183891 ( 58) GAGTAACAGCA 1 chr6:54129557-54129657 ( 43) GAGAGGGAACA 1 chr14:118180169-11818026 ( 9) GAGAACGAGAA 1 chr12:88841513-88841613 ( 74) CACTAACAGGA 1 chr10:94662717-94662817 ( 58) GCGTGCCAGAA 1 chr5:42918568-42918668 ( 88) GACGGGCAGGA 1 chr4:104663183-104663283 ( 34) GCGAGCCAAGA 1 chr1:120425518-120425618 ( 50) GTGACGCAGCA 1 chr4:40884582-40884682 ( 81) GCGTGGGAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGWGSCAGSA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 10.2799 E= 3.2e-002 -1312 150 88 -1312 154 -193 -1312 -135 -1312 7 185 -1312 109 -325 -425 33 -28 -267 177 -1312 -135 50 142 -466 -367 190 -25 -1312 181 -1312 -1312 -1312 -135 -1312 205 -1312 -42 45 121 -1312 148 -79 -145 -1312 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGWGSCAGSA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 89 E= 3.2e-002 0.000000 0.606742 0.393258 0.000000 0.831461 0.056180 0.000000 0.112360 0.000000 0.224719 0.775281 0.000000 0.606742 0.022472 0.011236 0.359551 0.235955 0.033708 0.730337 0.000000 0.112360 0.303371 0.573034 0.011236 0.022472 0.797753 0.179775 0.000000 1.000000 0.000000 0.000000 0.000000 0.112360 0.000000 0.887640 0.000000 0.213483 0.292135 0.494382 0.000000 0.797753 0.123596 0.078652 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGWGSCAGSA MEME-7 regular expression -------------------------------------------------------------------------------- [CG]A[GC][AT][GA][GC]CAG[GCA]A -------------------------------------------------------------------------------- Time 3093.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAAGTGCYTCTT MEME-8 width = 13 sites = 14 llr = 185 E-value = 5.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAAGTGCYTCTT MEME-8 Description -------------------------------------------------------------------------------- Simplified A ::883:::::1:1 pos.-specific C aa:2:::94:93: probability G ::1:72a1:1::1 matrix T ::1::8::69:77 bits 2.2 ** * 2.0 ** * 1.8 ** ** * 1.6 ** ** ** Relative 1.3 ** * ** ** Entropy 1.1 ** ********* (19.1 bits) 0.9 ************ 0.7 ************* 0.4 ************* 0.2 ************* 0.0 ------------- Multilevel CCAAGTGCTTCTT consensus CAG C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAGTGCYTCTT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------- chr11:6999285-6999385 - 36 1.50e-08 ATAAACACTC CCAAGTGCTTCTT GATTAGATGA chr7:97246375-97246475 + 30 1.50e-08 acagtggctg ccaAGTGCTTCTT TCCATATAGT chr19:35529125-35529225 + 34 1.50e-08 gtttaactta ccaagtgcttctt atttagggaa chr16:49243525-49243625 - 72 1.50e-08 CCTTTCCTCC CCAAGTGCTTCTT GGTCATGATG chr3:159049665-159049765 + 42 1.58e-07 atgtaccacc ccaaatgcctctt ttgcagagag chr7:49408052-49408152 - 49 2.56e-07 TTTCCACGTT CCACGGGCTTCTT CAGCCCTACC chr13:44282862-44282962 + 47 2.78e-07 TCAGGATCCT CCAAATGCCTCCT ACAGGAAACA chr3:85518195-85518295 - 79 7.02e-07 CACATGGCT CCTAGTGCTTCCT ATGGCCACGC chr4:46771150-46771250 + 22 8.90e-07 CCTGGCTTCC CCGAGTGCCTCTA AGAACGTGGA chr10:14208140-14208240 + 25 8.90e-07 GAAAGGCTTG CCACAGGCTTCTT TCTCACGTGT chr6:25667137-25667237 + 26 1.35e-06 GATGAATCTC CCAAAGGCTTCTA CAATTTTCAG chr2:5429828-5429928 + 48 2.32e-06 CAATCCATCT CCGAGTGCCGCCT GCATGCCGTT chr13:107207838-10720793 - 14 2.55e-06 ACTCCAGCTC CCAAGTGGCTCCG TTTCCCAGAG chr19:47484924-47485024 - 41 3.17e-06 TGGATTAGAG CCACGTGCTTATG ATCCCCAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAGTGCYTCTT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:6999285-6999385 1.5e-08 35_[-8]_52 chr7:97246375-97246475 1.5e-08 29_[+8]_58 chr19:35529125-35529225 1.5e-08 33_[+8]_54 chr16:49243525-49243625 1.5e-08 71_[-8]_16 chr3:159049665-159049765 1.6e-07 41_[+8]_46 chr7:49408052-49408152 2.6e-07 48_[-8]_39 chr13:44282862-44282962 2.8e-07 46_[+8]_41 chr3:85518195-85518295 7e-07 78_[-8]_9 chr4:46771150-46771250 8.9e-07 21_[+8]_66 chr10:14208140-14208240 8.9e-07 24_[+8]_63 chr6:25667137-25667237 1.4e-06 25_[+8]_62 chr2:5429828-5429928 2.3e-06 47_[+8]_40 chr13:107207838-10720793 2.6e-06 13_[-8]_74 chr19:47484924-47485024 3.2e-06 40_[-8]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAGTGCYTCTT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAAGTGCYTCTT width=13 seqs=14 chr11:6999285-6999385 ( 36) CCAAGTGCTTCTT 1 chr7:97246375-97246475 ( 30) CCAAGTGCTTCTT 1 chr19:35529125-35529225 ( 34) CCAAGTGCTTCTT 1 chr16:49243525-49243625 ( 72) CCAAGTGCTTCTT 1 chr3:159049665-159049765 ( 42) CCAAATGCCTCTT 1 chr7:49408052-49408152 ( 49) CCACGGGCTTCTT 1 chr13:44282862-44282962 ( 47) CCAAATGCCTCCT 1 chr3:85518195-85518295 ( 79) CCTAGTGCTTCCT 1 chr4:46771150-46771250 ( 22) CCGAGTGCCTCTA 1 chr10:14208140-14208240 ( 25) CCACAGGCTTCTT 1 chr6:25667137-25667237 ( 26) CCAAAGGCTTCTA 1 chr2:5429828-5429928 ( 48) CCGAGTGCCGCCT 1 chr13:107207838-10720793 ( 14) CCAAGTGGCTCCG 1 chr19:47484924-47485024 ( 41) CCACGTGCTTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAGTGCYTCTT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 52800 bayes= 12.4864 E= 5.0e+002 -1045 222 -1045 -1045 -1045 222 -1045 -1045 146 -1045 -59 -200 146 0 -1045 -1045 0 -1045 174 -1045 -1045 -1045 0 146 -1045 -1045 222 -1045 -1045 211 -158 -1045 -1045 74 -1045 117 -1045 -1045 -158 170 -200 211 -1045 -1045 -1045 41 -1045 132 -100 -1045 -59 132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAGTGCYTCTT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 14 E= 5.0e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.785714 0.000000 0.142857 0.071429 0.785714 0.214286 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 0.214286 0.785714 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.357143 0.000000 0.642857 0.000000 0.000000 0.071429 0.928571 0.071429 0.928571 0.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.142857 0.000000 0.142857 0.714286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAGTGCYTCTT MEME-8 regular expression -------------------------------------------------------------------------------- CCA[AC][GA][TG]GC[TC]TC[TC]T -------------------------------------------------------------------------------- Time 3496.57 secs. ******************************************************************************** ******************************************************************************** MOTIF RGAGVWGRSAR MEME-9 width = 11 sites = 78 llr = 704 E-value = 3.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAGVWGRSAR MEME-9 Description -------------------------------------------------------------------------------- Simplified A 5:a:46:3:95 pos.-specific C :3::3::15:: probability G 57:a3:a6414 matrix T :::::4::1:1 bits 2.2 * * 2.0 * * 1.8 * * 1.6 ** * Relative 1.3 ** * * Entropy 1.1 **** * * (13.0 bits) 0.9 **** ***** 0.7 **** ***** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GGAGAAGGCAA consensus AC CT AG G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGVWGRSAR MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr9:28261333-28261433 + 79 1.03e-07 GCTAAGAGAT GGAGCAGGCAG TGCATCTTTT chr11:113110893-11311099 + 86 2.06e-07 TCCAATCCTC GGAGGAGGCAG AAGA chr1:24891438-24891538 - 18 2.06e-07 TAGTGCATCA GGAGGAGGCAG CAATGTCCCA chr16:94931943-94932043 + 65 1.63e-06 GCAGCTTGTG GGAGGAGGGAG GGGCTAGACA chr4:14212644-14212744 - 54 1.63e-06 TTGCCAAGTT GGAGAAGGCAA TTTTTTGAGA chr11:109031479-10903157 + 59 1.63e-06 ttctgctcct ggagctggcaa gctgatttct chr2:82113112-82113212 + 1 2.28e-06 . AGAGGAGGCAG CAGCACTGCC chr1:9627455-9627555 + 68 3.21e-06 AAGGTTGCCT AGAGCTGGCAG ATGGGCAGTG chr6:117718409-117718509 + 40 3.21e-06 AGTGGATCAA GGAGGTGGGAG GGAAGGAACT chr16:29816972-29817072 + 23 3.21e-06 ttttcccttc ggaggagggaa agaactcgat chr10:24618394-24618494 - 46 3.21e-06 AATGGTTACA GGAGATGGCAA ATCTGTCTGG chr2:42696852-42696952 + 19 4.13e-06 TGTCAGAAAT AGAGGAGGCAA GAATATTTAG chr8:28148604-28148704 + 41 6.23e-06 GTTATATACC AGAGCAGGGAA GACAGACACA chr12:88841513-88841613 - 24 7.31e-06 AATGAATGCC AGAGATGGCAA AGAGACAAAA chr12:117403472-11740357 - 45 7.31e-06 ATGAACAATT GCAGCAGGCAA TAGCGACATC chr18:29206462-29206562 - 6 7.31e-06 ATGCTGCTGG AGAGATGGCAA GAAGT chr13:54855848-54855948 + 34 8.77e-06 GAGCCTAAGC AGAGAAGGGAA CACAGCCGTG chr9:41803667-41803767 - 70 1.01e-05 TCAACAGCAA GCAGGAGGGAG ACATAATGCA chr7:117867814-117867914 - 27 1.01e-05 CAAGGTGTCA ACAGCAGGCAG AGATTAGCAC chr9:36941983-36942083 + 42 1.38e-05 TGCAAAGACT GGAGCAGAGAA CACAGCTTTC chr3:79972339-79972439 + 37 1.38e-05 TAACTCTATG GCAGATGGCAA GTTAGAGTTA chr11:32112986-32113086 - 64 1.38e-05 GCTGTGAGGG GGAGGTGACAA AGCCACAATG chr12:60045347-60045447 - 87 1.38e-05 GAA GGAGCTGAGAG TTTCACATCT chr19:58114306-58114406 + 35 1.38e-05 TTCTATAGAA ACAGAAGGCAG TGGGATGAAA chr1:63406330-63406430 + 85 1.60e-05 AAATGTTGAG GCAGAAGGGAA ATCGA chr2:7734638-7734738 - 71 1.60e-05 GCAAAGACTT AGAGCTGACAG CCTCCTTTGC chr10:27384631-27384731 + 17 1.60e-05 TTAAAATCTT GGAGCAGGCGG TGCAGATAGT chr3:36406276-36406376 + 40 1.82e-05 AAGCAGTCAG ACAGATGGCAG GGAAGTTGTT chr2:55480251-55480351 + 64 1.82e-05 tgctcttgct acagatggCAG GCATTTGCTT chr2:5249993-5250093 - 59 1.82e-05 CAGCCAGCTT GGAGCTGAGAA CAGACAGAAG chr8:125133575-125133675 - 75 2.07e-05 CTGCAGTCCC AGAGGAGAGAG ATGAGCTCCA chr15:66174658-66174758 + 22 2.29e-05 CCGGAAGGAT AGAGAAGAGAG AGGGGAGAGG chr13:93419780-93419880 - 14 2.29e-05 CACAGCAGGC AGAGCTGAGAG GGCAATGCTT chr13:117704703-11770480 - 18 2.29e-05 GAATTTCAAA GGAGATGAGAA AGCTTGGGGA chr6:64588730-64588830 - 63 2.29e-05 GGAGCATGAC ACAGATGGCAA AGACACTGAG chr18:64856165-64856265 - 1 2.55e-05 CAAAGCAAGA GCAGCTGACAG chr14:114685096-11468519 + 43 2.55e-05 gctgCCACCC AGAGGAGAGAA ACAGCCCTCT chr8:72873286-72873386 + 82 2.55e-05 AGAGTGAAGA ACAGATGGGAG TTGAGAGC chr9:23579902-23580002 - 88 2.55e-05 CT ACAGAAGGGAA TTTTGGCTTC chr8:104050827-104050927 + 14 2.81e-05 AGAAAGGAAG AGAGAAGAGAA TCCCGAATGC chr2:124431130-124431230 - 39 2.81e-05 CCCCCATTCC AGAGCTGAGAA TGGAGCTGCT chr2:57145977-57146077 - 87 2.81e-05 CCC AGAGAAGAGAA CTGTCATCCT chr1:83636040-83636140 + 33 2.81e-05 GATTTCTGGT GGAGCTGCCAG ACATTTTCAG chr4:66183791-66183891 + 86 3.11e-05 GCAGGTTTGT GGAGGAGGGGA AGGG chr15:92293743-92293843 + 36 3.11e-05 ATCTGCATAA GCAGATGACAG TTCCCCAAAT chr15:53591449-53591549 - 86 3.11e-05 GGTA GCAGAAGACAA CACAGGCAAG chr4:14723009-14723109 + 60 3.44e-05 gcatagtctc acaggagacag ctatatcagg chr9:49591947-49592047 - 54 3.44e-05 CAAGAAATGA ACAGGAGACAG ACCATACAGA chr2:135029150-135029250 - 56 3.44e-05 AGAGGGAGGA GGAGAAGGGGA GGGAGAGAGA chr5:125245579-125245679 - 2 3.79e-05 CCTAATCCCC AGAGGAGCCAG A chrX:12494361-12494461 - 80 3.79e-05 AACAGAACAG GGAGATGGCAT GGGCTTTTCA chr4:48771802-48771902 - 14 3.79e-05 AAGCCTGGAA AGAGCTGGCGA CACAGCCTTC chr4:40884582-40884682 + 39 4.22e-05 AAAAATGATA GCAGCTGAGAA AAAGAAAAAA chr10:98352061-98352161 + 50 4.22e-05 CGTTTGCAAA GGAGCTGGTAA GACTTGGCTC chr13:36153125-36153225 + 76 4.60e-05 AGATGGAGGA AGAGGTGCCAG CTCAAGAAAG chr3:53301801-53301901 + 67 4.60e-05 TATGGGACTC GGAGGTGGTAA CAACGTTGTC chr18:75562729-75562829 - 49 5.07e-05 TTTTCAGGAG AGAGCAGGTAA CAATGTAGCT chr15:30306410-30306510 - 35 5.07e-05 ACATATGCTA ACAGCTGAGAG CGCAGCAATG chr1:94183806-94183906 - 14 5.95e-05 GAGGCAAGTG GCAGAAGGGGG AGAATGGAAA chr2:162401662-162401762 + 80 6.36e-05 CCAAACAGGA GGAGGAGACAT CCtatgaagg chr9:30300627-30300727 - 59 6.86e-05 GAAGTCTGTA AGAGATGGGAT GGGCTCTTTT chr5:128204785-128204885 + 10 7.34e-05 GTAAGGAAG GCAGGAGGTAA GGGAGAGCAT chr1:32219742-32219842 + 18 7.89e-05 TGACCTGAGT GGTGGAGGCAG AAACCTTAGT chr13:95086034-95086134 + 88 8.47e-05 CAAATATCCA ACAGCAGCGAG CT chr15:19236466-19236566 + 33 8.47e-05 AGGAATTGAT GGAGATGATAG GAGTGTGTTG chr10:72613540-72613640 - 7 9.08e-05 AACATGCAGA GCAGATGGTAA AGTATC chr1:53970274-53970374 + 34 9.08e-05 AGACTTTCAG GGTGGAGGCAA GAAGTGCCAA chrX:131918561-131918661 - 45 1.11e-04 TTGAGCTTTC AGAGCTGATAA CATTTCAGCT chr4:66531808-66531908 - 20 1.11e-04 AAATATAACT GAAGCAGGGAG AGAATATGCA chr2:168403011-168403111 - 9 1.11e-04 GCCCAATGTA GGTGGAGGGAA AGCCTGTG chr2:57181875-57181975 - 63 1.11e-04 CCGGCTGCTT GGAGATGCCGG GGATTGAACC chr13:110557906-11055800 + 25 1.18e-04 CACACAAAAG AGAGCAGGCGT AGTTGTTAGT chr17:80809223-80809323 - 41 1.51e-04 TTGTGAAGTC ACAGCAGGGAC GGAAATCGAC chr10:54290102-54290202 + 87 1.60e-04 aggaggatgg agagatgccga aag chr1:102334626-102334726 - 83 1.79e-04 TGGACAC AGAGGAGCGAT GGGGGAAATC chr15:32778945-32779045 + 80 1.87e-04 CTAGAATGCT AGAGCAGGCGC CAGAGAAGAC chr2:135296143-135296243 + 55 1.97e-04 tcaggatgtg ggagatgacgt aaaccacttc chr11:35262533-35262633 + 37 2.48e-04 TGTCAAAGGA GAAGGAGGCGA TTTTGAGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGVWGRSAR MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:28261333-28261433 1e-07 78_[+9]_11 chr11:113110893-11311099 2.1e-07 85_[+9]_4 chr1:24891438-24891538 2.1e-07 17_[-9]_72 chr16:94931943-94932043 1.6e-06 64_[+9]_25 chr4:14212644-14212744 1.6e-06 53_[-9]_36 chr11:109031479-10903157 1.6e-06 58_[+9]_31 chr2:82113112-82113212 2.3e-06 [+9]_89 chr1:9627455-9627555 3.2e-06 67_[+9]_22 chr6:117718409-117718509 3.2e-06 39_[+9]_50 chr16:29816972-29817072 3.2e-06 22_[+9]_67 chr10:24618394-24618494 3.2e-06 45_[-9]_44 chr2:42696852-42696952 4.1e-06 18_[+9]_71 chr8:28148604-28148704 6.2e-06 40_[+9]_49 chr12:88841513-88841613 7.3e-06 23_[-9]_66 chr12:117403472-11740357 7.3e-06 44_[-9]_45 chr18:29206462-29206562 7.3e-06 5_[-9]_84 chr13:54855848-54855948 8.8e-06 33_[+9]_56 chr9:41803667-41803767 1e-05 69_[-9]_20 chr7:117867814-117867914 1e-05 26_[-9]_63 chr9:36941983-36942083 1.4e-05 41_[+9]_48 chr3:79972339-79972439 1.4e-05 36_[+9]_53 chr11:32112986-32113086 1.4e-05 63_[-9]_26 chr12:60045347-60045447 1.4e-05 86_[-9]_3 chr19:58114306-58114406 1.4e-05 34_[+9]_55 chr1:63406330-63406430 1.6e-05 84_[+9]_5 chr2:7734638-7734738 1.6e-05 70_[-9]_19 chr10:27384631-27384731 1.6e-05 16_[+9]_73 chr3:36406276-36406376 1.8e-05 39_[+9]_50 chr2:55480251-55480351 1.8e-05 63_[+9]_26 chr2:5249993-5250093 1.8e-05 58_[-9]_31 chr8:125133575-125133675 2.1e-05 74_[-9]_15 chr15:66174658-66174758 2.3e-05 21_[+9]_68 chr13:93419780-93419880 2.3e-05 13_[-9]_76 chr13:117704703-11770480 2.3e-05 17_[-9]_72 chr6:64588730-64588830 2.3e-05 62_[-9]_27 chr18:64856165-64856265 2.6e-05 [-9]_89 chr14:114685096-11468519 2.6e-05 42_[+9]_47 chr8:72873286-72873386 2.6e-05 81_[+9]_8 chr9:23579902-23580002 2.6e-05 87_[-9]_2 chr8:104050827-104050927 2.8e-05 13_[+9]_76 chr2:124431130-124431230 2.8e-05 38_[-9]_51 chr2:57145977-57146077 2.8e-05 86_[-9]_3 chr1:83636040-83636140 2.8e-05 32_[+9]_57 chr4:66183791-66183891 3.1e-05 85_[+9]_4 chr15:92293743-92293843 3.1e-05 35_[+9]_54 chr15:53591449-53591549 3.1e-05 85_[-9]_4 chr4:14723009-14723109 3.4e-05 59_[+9]_30 chr9:49591947-49592047 3.4e-05 53_[-9]_36 chr2:135029150-135029250 3.4e-05 55_[-9]_34 chr5:125245579-125245679 3.8e-05 1_[-9]_88 chrX:12494361-12494461 3.8e-05 79_[-9]_10 chr4:48771802-48771902 3.8e-05 13_[-9]_76 chr4:40884582-40884682 4.2e-05 38_[+9]_51 chr10:98352061-98352161 4.2e-05 49_[+9]_40 chr13:36153125-36153225 4.6e-05 75_[+9]_14 chr3:53301801-53301901 4.6e-05 66_[+9]_23 chr18:75562729-75562829 5.1e-05 48_[-9]_41 chr15:30306410-30306510 5.1e-05 34_[-9]_55 chr1:94183806-94183906 6e-05 13_[-9]_76 chr2:162401662-162401762 6.4e-05 79_[+9]_10 chr9:30300627-30300727 6.9e-05 58_[-9]_31 chr5:128204785-128204885 7.3e-05 9_[+9]_80 chr1:32219742-32219842 7.9e-05 17_[+9]_72 chr13:95086034-95086134 8.5e-05 87_[+9]_2 chr15:19236466-19236566 8.5e-05 32_[+9]_57 chr10:72613540-72613640 9.1e-05 6_[-9]_83 chr1:53970274-53970374 9.1e-05 33_[+9]_56 chrX:131918561-131918661 0.00011 44_[-9]_45 chr4:66531808-66531908 0.00011 19_[-9]_70 chr2:168403011-168403111 0.00011 8_[-9]_81 chr2:57181875-57181975 0.00011 62_[-9]_27 chr13:110557906-11055800 0.00012 24_[+9]_65 chr17:80809223-80809323 0.00015 40_[-9]_49 chr10:54290102-54290202 0.00016 86_[+9]_3 chr1:102334626-102334726 0.00018 82_[-9]_7 chr15:32778945-32779045 0.00019 79_[+9]_10 chr2:135296143-135296243 0.0002 54_[+9]_35 chr11:35262533-35262633 0.00025 36_[+9]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGVWGRSAR MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAGVWGRSAR width=11 seqs=78 chr9:28261333-28261433 ( 79) GGAGCAGGCAG 1 chr11:113110893-11311099 ( 86) GGAGGAGGCAG 1 chr1:24891438-24891538 ( 18) GGAGGAGGCAG 1 chr16:94931943-94932043 ( 65) GGAGGAGGGAG 1 chr4:14212644-14212744 ( 54) GGAGAAGGCAA 1 chr11:109031479-10903157 ( 59) GGAGCTGGCAA 1 chr2:82113112-82113212 ( 1) AGAGGAGGCAG 1 chr1:9627455-9627555 ( 68) AGAGCTGGCAG 1 chr6:117718409-117718509 ( 40) GGAGGTGGGAG 1 chr16:29816972-29817072 ( 23) GGAGGAGGGAA 1 chr10:24618394-24618494 ( 46) GGAGATGGCAA 1 chr2:42696852-42696952 ( 19) AGAGGAGGCAA 1 chr8:28148604-28148704 ( 41) AGAGCAGGGAA 1 chr12:88841513-88841613 ( 24) AGAGATGGCAA 1 chr12:117403472-11740357 ( 45) GCAGCAGGCAA 1 chr18:29206462-29206562 ( 6) AGAGATGGCAA 1 chr13:54855848-54855948 ( 34) AGAGAAGGGAA 1 chr9:41803667-41803767 ( 70) GCAGGAGGGAG 1 chr7:117867814-117867914 ( 27) ACAGCAGGCAG 1 chr9:36941983-36942083 ( 42) GGAGCAGAGAA 1 chr3:79972339-79972439 ( 37) GCAGATGGCAA 1 chr11:32112986-32113086 ( 64) GGAGGTGACAA 1 chr12:60045347-60045447 ( 87) GGAGCTGAGAG 1 chr19:58114306-58114406 ( 35) ACAGAAGGCAG 1 chr1:63406330-63406430 ( 85) GCAGAAGGGAA 1 chr2:7734638-7734738 ( 71) AGAGCTGACAG 1 chr10:27384631-27384731 ( 17) GGAGCAGGCGG 1 chr3:36406276-36406376 ( 40) ACAGATGGCAG 1 chr2:55480251-55480351 ( 64) ACAGATGGCAG 1 chr2:5249993-5250093 ( 59) GGAGCTGAGAA 1 chr8:125133575-125133675 ( 75) AGAGGAGAGAG 1 chr15:66174658-66174758 ( 22) AGAGAAGAGAG 1 chr13:93419780-93419880 ( 14) AGAGCTGAGAG 1 chr13:117704703-11770480 ( 18) GGAGATGAGAA 1 chr6:64588730-64588830 ( 63) ACAGATGGCAA 1 chr18:64856165-64856265 ( 1) GCAGCTGACAG 1 chr14:114685096-11468519 ( 43) AGAGGAGAGAA 1 chr8:72873286-72873386 ( 82) ACAGATGGGAG 1 chr9:23579902-23580002 ( 88) ACAGAAGGGAA 1 chr8:104050827-104050927 ( 14) AGAGAAGAGAA 1 chr2:124431130-124431230 ( 39) AGAGCTGAGAA 1 chr2:57145977-57146077 ( 87) AGAGAAGAGAA 1 chr1:83636040-83636140 ( 33) GGAGCTGCCAG 1 chr4:66183791-66183891 ( 86) GGAGGAGGGGA 1 chr15:92293743-92293843 ( 36) GCAGATGACAG 1 chr15:53591449-53591549 ( 86) GCAGAAGACAA 1 chr4:14723009-14723109 ( 60) ACAGGAGACAG 1 chr9:49591947-49592047 ( 54) ACAGGAGACAG 1 chr2:135029150-135029250 ( 56) GGAGAAGGGGA 1 chr5:125245579-125245679 ( 2) AGAGGAGCCAG 1 chrX:12494361-12494461 ( 80) GGAGATGGCAT 1 chr4:48771802-48771902 ( 14) AGAGCTGGCGA 1 chr4:40884582-40884682 ( 39) GCAGCTGAGAA 1 chr10:98352061-98352161 ( 50) GGAGCTGGTAA 1 chr13:36153125-36153225 ( 76) AGAGGTGCCAG 1 chr3:53301801-53301901 ( 67) GGAGGTGGTAA 1 chr18:75562729-75562829 ( 49) AGAGCAGGTAA 1 chr15:30306410-30306510 ( 35) ACAGCTGAGAG 1 chr1:94183806-94183906 ( 14) GCAGAAGGGGG 1 chr2:162401662-162401762 ( 80) GGAGGAGACAT 1 chr9:30300627-30300727 ( 59) AGAGATGGGAT 1 chr5:128204785-128204885 ( 10) GCAGGAGGTAA 1 chr1:32219742-32219842 ( 18) GGTGGAGGCAG 1 chr13:95086034-95086134 ( 88) ACAGCAGCGAG 1 chr15:19236466-19236566 ( 33) GGAGATGATAG 1 chr10:72613540-72613640 ( 7) GCAGATGGTAA 1 chr1:53970274-53970374 ( 34) GGTGGAGGCAA 1 chrX:131918561-131918661 ( 45) AGAGCTGATAA 1 chr4:66531808-66531908 ( 20) GAAGCAGGGAG 1 chr2:168403011-168403111 ( 9) GGTGGAGGGAA 1 chr2:57181875-57181975 ( 63) GGAGATGCCGG 1 chr13:110557906-11055800 ( 25) AGAGCAGGCGT 1 chr17:80809223-80809323 ( 41) ACAGCAGGGAC 1 chr10:54290102-54290202 ( 87) AGAGATGCCGA 1 chr1:102334626-102334726 ( 83) AGAGGAGCGAT 1 chr15:32778945-32779045 ( 80) AGAGCAGGCGC 1 chr2:135296143-135296243 ( 55) GGAGATGACGT 1 chr11:35262533-35262633 ( 37) GAAGGAGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGVWGRSAR MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 9.65711 E= 3.0e+000 73 -1293 129 -1293 -348 46 166 -1293 175 -1293 -1293 -289 -1293 -1293 222 -1293 33 64 52 -1293 95 -1293 -1293 65 -1293 -1293 222 -1293 11 -126 149 -1293 -1293 126 89 -167 159 -1293 -60 -1293 73 -306 98 -189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGVWGRSAR MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 78 E= 3.0e+000 0.474359 0.000000 0.525641 0.000000 0.025641 0.294872 0.679487 0.000000 0.961538 0.000000 0.000000 0.038462 0.000000 0.000000 1.000000 0.000000 0.358974 0.333333 0.307692 0.000000 0.551282 0.000000 0.000000 0.448718 0.000000 0.000000 1.000000 0.000000 0.307692 0.089744 0.602564 0.000000 0.000000 0.512821 0.397436 0.089744 0.858974 0.000000 0.141026 0.000000 0.474359 0.025641 0.423077 0.076923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGVWGRSAR MEME-9 regular expression -------------------------------------------------------------------------------- [GA][GC]AG[ACG][AT]G[GA][CG]A[AG] -------------------------------------------------------------------------------- Time 3894.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTSTKSTTCCCAG MEME-10 width = 14 sites = 24 llr = 286 E-value = 3.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTSTKSTTCCCAG MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::11::::1::19: pos.-specific C 1123::41:8a9:: probability G :916355:23:::9 matrix T 9:6:75196::::1 bits 2.2 2.0 * 1.8 * * * 1.6 * ** * Relative 1.3 ** * ***** Entropy 1.1 ** ** * ***** (17.2 bits) 0.9 ** ***** ***** 0.7 ** ***** ***** 0.4 ************** 0.2 ************** 0.0 -------------- Multilevel TGTGTGGTTCCCAG consensus CCGTC GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTSTKSTTCCCAG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr15:73887325-73887425 + 50 2.69e-08 CAGGGTCAGT TGCGTGCTTCCCAG GTGCTCTCCT chr10:4113257-4113357 - 53 4.21e-08 GCAGGAATGA TGTGTGCTTGCCAG AGAAATGGAG chr15:95612584-95612684 - 60 5.89e-08 GTTCCAGAGC TGTCTTCTTCCCAG GAGTCTTTGG chr13:101024949-10102504 - 6 1.30e-07 ACATCAACAC TGAGTGGTTCCCAG ATGAA chr8:68483857-68483957 - 2 3.45e-07 TCATTGCATG TGGCTTCTTCCCAG T chr3:53301801-53301901 - 36 3.45e-07 ATAATCCTCT TGGCTTCTTCCCAG AACTCTGTTT chr3:138026352-138026452 + 32 3.84e-07 ACCAATGATC TGTGTGCTAGCCAG GAGCCAGGAG chr11:51085164-51085264 + 69 4.75e-07 GTGCAAAGCG CGTGGTCTTCCCAG CTTTACCACC chr10:24618394-24618494 - 29 5.98e-07 ATGGCAAATC TGTCTGGTCCCCAG GAGACTGATG chrX:167149360-167149460 + 26 8.03e-07 ACACTAAGCC TGTGTTGTGCCAAG TGTGGTGCTT chr2:135353884-135353984 + 85 8.03e-07 ctaccaccca tgcgtggttcccat ct chr12:40509737-40509837 + 59 8.80e-07 TTTTAAAAGA TGTAGGGTTgccag gcatggtgac chr8:32792761-32792861 - 22 8.80e-07 CTGCTGTGGA TGTCTGGCGCCCAG CAGTGCCAGA chr7:68365720-68365820 + 48 1.54e-06 ctgcagaatt tggcgtctgcccag ctggctttca chr1:168407869-168407969 - 79 1.68e-06 AAGCAATG TGTGGTGCTGCCAG GAGCCCTGGA chr12:64392985-64393085 + 55 2.36e-06 GTCAAAAGAG TGTGGTGTTCTCAG ACTCCTCAGG chr15:38596359-38596459 + 70 3.02e-06 GCTGCAGAAG TGCATGGTTCCAAG AGGCAGAGGA chr17:66478233-66478333 + 60 3.02e-06 ACTGTTTCAT TGCATTCTACCCAG AGAGCGGGTG chr4:103475432-103475532 - 71 3.81e-06 AAAGTCATCC TGAGTGCTGCCAAG AGCTACAGCA chr9:16228442-16228542 - 29 4.11e-06 GAAAAACCAT TCTCTGTTTCCCAG CGTCATTACA chr14:120685249-12068534 - 52 4.76e-06 AGCACAGGGG CGTGGTGTAGCCAG CACTCTGCAA chr4:14723009-14723109 + 30 5.13e-06 agcatccact tctgtgtttgccag gcactggcat chr15:64446361-64446461 + 28 8.33e-06 CTGGCACAGT CGTGGGGTGCCCTG ACTCACAGCA chr12:79744041-79744141 + 9 1.23e-05 TGGACAAG TGCGTTGTTCCCCT CTTACATGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTSTKSTTCCCAG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:73887325-73887425 2.7e-08 49_[+10]_37 chr10:4113257-4113357 4.2e-08 52_[-10]_34 chr15:95612584-95612684 5.9e-08 59_[-10]_27 chr13:101024949-10102504 1.3e-07 5_[-10]_81 chr8:68483857-68483957 3.4e-07 1_[-10]_85 chr3:53301801-53301901 3.4e-07 35_[-10]_51 chr3:138026352-138026452 3.8e-07 31_[+10]_55 chr11:51085164-51085264 4.8e-07 68_[+10]_18 chr10:24618394-24618494 6e-07 28_[-10]_58 chrX:167149360-167149460 8e-07 25_[+10]_61 chr2:135353884-135353984 8e-07 84_[+10]_2 chr12:40509737-40509837 8.8e-07 58_[+10]_28 chr8:32792761-32792861 8.8e-07 21_[-10]_65 chr7:68365720-68365820 1.5e-06 47_[+10]_39 chr1:168407869-168407969 1.7e-06 78_[-10]_8 chr12:64392985-64393085 2.4e-06 54_[+10]_32 chr15:38596359-38596459 3e-06 69_[+10]_17 chr17:66478233-66478333 3e-06 59_[+10]_27 chr4:103475432-103475532 3.8e-06 70_[-10]_16 chr9:16228442-16228542 4.1e-06 28_[-10]_58 chr14:120685249-12068534 4.8e-06 51_[-10]_35 chr4:14723009-14723109 5.1e-06 29_[+10]_57 chr15:64446361-64446461 8.3e-06 27_[+10]_59 chr12:79744041-79744141 1.2e-05 8_[+10]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTSTKSTTCCCAG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTSTKSTTCCCAG width=14 seqs=24 chr15:73887325-73887425 ( 50) TGCGTGCTTCCCAG 1 chr10:4113257-4113357 ( 53) TGTGTGCTTGCCAG 1 chr15:95612584-95612684 ( 60) TGTCTTCTTCCCAG 1 chr13:101024949-10102504 ( 6) TGAGTGGTTCCCAG 1 chr8:68483857-68483957 ( 2) TGGCTTCTTCCCAG 1 chr3:53301801-53301901 ( 36) TGGCTTCTTCCCAG 1 chr3:138026352-138026452 ( 32) TGTGTGCTAGCCAG 1 chr11:51085164-51085264 ( 69) CGTGGTCTTCCCAG 1 chr10:24618394-24618494 ( 29) TGTCTGGTCCCCAG 1 chrX:167149360-167149460 ( 26) TGTGTTGTGCCAAG 1 chr2:135353884-135353984 ( 85) TGCGTGGTTCCCAT 1 chr12:40509737-40509837 ( 59) TGTAGGGTTGCCAG 1 chr8:32792761-32792861 ( 22) TGTCTGGCGCCCAG 1 chr7:68365720-68365820 ( 48) TGGCGTCTGCCCAG 1 chr1:168407869-168407969 ( 79) TGTGGTGCTGCCAG 1 chr12:64392985-64393085 ( 55) TGTGGTGTTCTCAG 1 chr15:38596359-38596459 ( 70) TGCATGGTTCCAAG 1 chr17:66478233-66478333 ( 60) TGCATTCTACCCAG 1 chr4:103475432-103475532 ( 71) TGAGTGCTGCCAAG 1 chr9:16228442-16228542 ( 29) TCTCTGTTTCCCAG 1 chr14:120685249-12068534 ( 52) CGTGGTGTAGCCAG 1 chr4:14723009-14723109 ( 30) TCTGTGTTTGCCAG 1 chr15:64446361-64446461 ( 28) CGTGGGGTGCCCTG 1 chr12:79744041-79744141 ( 9) TGCGTTGTTCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTSTKSTTCCCAG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 11.5338 E= 3.8e+001 -1123 -78 -1123 161 -1123 -136 210 -1123 -178 -4 -78 103 -119 44 144 -1123 -1123 -1123 44 131 -1123 -1123 134 68 -1123 96 122 -178 -1123 -136 -1123 168 -119 -236 -4 113 -1123 181 22 -1123 -1123 216 -1123 -277 -119 203 -1123 -1123 168 -236 -1123 -277 -1123 -1123 210 -178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTSTKSTTCCCAG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 24 E= 3.8e+001 0.000000 0.125000 0.000000 0.875000 0.000000 0.083333 0.916667 0.000000 0.083333 0.208333 0.125000 0.583333 0.125000 0.291667 0.583333 0.000000 0.000000 0.000000 0.291667 0.708333 0.000000 0.000000 0.541667 0.458333 0.000000 0.416667 0.500000 0.083333 0.000000 0.083333 0.000000 0.916667 0.125000 0.041667 0.208333 0.625000 0.000000 0.750000 0.250000 0.000000 0.000000 0.958333 0.000000 0.041667 0.125000 0.875000 0.000000 0.000000 0.916667 0.041667 0.000000 0.041667 0.000000 0.000000 0.916667 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTSTKSTTCCCAG MEME-10 regular expression -------------------------------------------------------------------------------- TG[TC][GC][TG][GT][GC]T[TG][CG]CCAG -------------------------------------------------------------------------------- Time 4278.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:94183806-94183906 7.64e-05 23_[+8(4.36e-05)]_36_[-7(3.82e-05)]_\ 17 chr17:67175733-67175833 2.14e-03 44_[-2(3.04e-07)]_41 chr6:98769892-98769992 2.49e-03 89_[+9(7.31e-06)] chr14:87554871-87554971 2.77e-01 100 chr2:68908064-68908164 3.06e-01 100 chr1:10596318-10596418 1.73e-04 3_[+3(3.65e-05)]_68_[-2(7.82e-07)]_\ 3 chr11:109031479-10903157 7.88e-04 58_[+9(1.63e-06)]_31 chrX:98506360-98506460 2.70e-02 3_[-1(1.55e-06)]_76 chr5:24230191-24230291 4.13e-02 100 chr15:27989162-27989262 1.80e-01 100 chr14:117925289-11792538 2.79e-01 100 chr2:92790324-92790424 9.25e-02 27_[+7(1.84e-05)]_62 chr10:98352061-98352161 1.41e-01 49_[+9(4.22e-05)]_40 chr1:147748856-147748956 4.24e-01 100 chr9:46632496-46632596 2.19e-02 100 chr11:13555660-13555760 1.40e-01 4_[-3(1.13e-05)]_85 chr2:114918865-114918965 1.04e-01 42_[-3(1.96e-05)]_47 chr12:53377842-53377942 9.35e-01 100 chr6:31159243-31159343 1.34e-05 25_[-1(1.27e-05)]_23_[-2(3.05e-06)]_\ 16 chr10:108763668-10876376 3.13e-01 100 chr3:29710622-29710722 1.81e-01 13_[+7(6.16e-05)]_76 chr12:42147868-42147968 2.18e-02 100 chr1:22245448-22245548 5.33e-01 100 chr2:92812909-92813009 6.78e-01 100 chr8:125133575-125133675 1.34e-06 5_[-3(1.96e-05)]_22_[-1(6.18e-06)]_\ 15_[-9(2.07e-05)]_15 chr14:99344097-99344197 2.83e-02 100 chr8:28148604-28148704 1.11e-05 3_[-9(1.60e-05)]_26_[+9(6.23e-06)]_\ 49 chr2:135296143-135296243 9.90e-02 100 chr15:77268300-77268400 5.55e-01 100 chr8:45586924-45587024 1.28e-03 46_[+7(3.15e-05)]_43 chr4:23983515-23983615 1.72e-01 100 chr12:88532550-88532650 9.28e-03 17_[-3(5.58e-05)]_2_[+9(6.86e-05)]_\ 46_[-9(4.22e-05)]_2 chr9:81538305-81538405 1.80e-01 5_[-10(7.39e-05)]_81 chr1:32219742-32219842 1.47e-02 17_[+9(7.89e-05)]_72 chr10:47278801-47278901 1.57e-01 21_[+10(8.67e-05)]_65 chr7:144314368-144314468 9.30e-04 84_[-3(1.10e-06)]_5 chr10:63886608-63886708 4.16e-02 100 chr5:25829801-25829901 8.17e-03 55_[+1(1.41e-05)]_24 chr13:113464115-11346421 8.23e-03 63_[-7(8.19e-05)]_26 chr3:80521268-80521368 8.28e-13 70_[-4(1.13e-18)] chr16:72027629-72027729 8.84e-03 100 chr18:63820095-63820195 2.62e-02 17_[+2(4.31e-05)]_68 chr14:38935213-38935313 5.69e-02 100 chr16:89757375-89757475 4.26e-04 19_[+1(3.98e-06)]_22_[+7(1.57e-05)]_\ 27 chr3:117751562-117751662 1.43e-05 73_[-2(1.34e-06)]_12 chr4:40884582-40884682 9.40e-03 38_[+9(4.22e-05)]_51 chr5:79733824-79733924 5.35e-01 100 chr6:46696159-46696259 3.30e-05 32_[+7(1.01e-05)]_57 chr14:61498132-61498232 9.94e-03 45_[-1(5.39e-05)]_1_[+2(4.80e-06)]_\ 18 chrX:39250068-39250168 8.04e-03 3_[+7(2.09e-05)]_24_[-7(3.04e-06)]_\ 51 chr3:150291177-150291277 2.91e-01 100 chr11:8493996-8494096 1.59e-01 100 chr7:117867814-117867914 2.90e-02 26_[-9(1.01e-05)]_63 chr4:28298889-28298989 1.64e-10 [-7(3.04e-06)]_53_[-1(9.33e-07)]_15 chr15:53591449-53591549 8.88e-06 1_[+4(1.80e-05)]_43_[-7(3.48e-05)]_\ [-9(3.11e-05)]_4 chr2:68537021-68537121 5.73e-01 100 chr18:22083483-22083583 9.96e-01 100 chr13:70294992-70295092 1.24e-01 100 chr9:23579902-23580002 7.89e-02 87_[-9(2.55e-05)]_2 chr13:42403206-42403306 2.09e-03 56_[-7(1.57e-05)]_33 chr2:5429828-5429928 2.09e-03 47_[+8(2.32e-06)]_40 chr3:81730189-81730289 3.02e-03 100 chr2:80731815-80731915 7.39e-01 100 chr18:77985724-77985824 2.46e-01 100 chr12:29356974-29357074 2.23e-03 67_[-7(4.21e-05)]_22 chr10:4684006-4684106 6.36e-02 100 chr13:89404462-89404562 1.83e-02 100 chr4:47576880-47576980 2.92e-01 100 chr5:47820789-47820889 5.57e-02 100 chr3:138026352-138026452 1.09e-03 31_[+10(3.84e-07)]_13_\ [-10(5.52e-06)]_28 chr2:167150843-167150943 5.27e-02 100 chr15:50993215-50993315 6.42e-01 100 chr18:82508180-82508280 5.46e-04 68_[-1(4.20e-05)]_11 chr2:42696852-42696952 2.36e-01 18_[+9(4.13e-06)]_71 chr3:115660963-115661063 1.57e-05 24_[-7(3.82e-05)]_9_[+2(1.28e-07)]_\ 41 chr9:16228442-16228542 4.23e-03 28_[-10(4.11e-06)]_58 chr12:9952219-9952319 4.74e-01 100 chr2:135029150-135029250 8.48e-17 [-5(3.59e-13)]_[+1(8.44e-09)]_4_\ [-9(3.44e-05)]_[+1(1.55e-06)]_13 chr1:184969343-184969443 9.22e-02 100 chr2:80911150-80911250 5.13e-01 100 chr13:54855848-54855948 2.92e-07 7_[-7(2.09e-05)]_15_[+9(8.77e-06)]_\ 13_[+3(1.10e-06)]_32 chr9:49989793-49989893 1.87e-04 49_[-9(9.08e-05)]_8_[-1(1.37e-06)]_\ 11 chr12:90174177-90174277 1.86e-01 100 chr6:23700795-23700895 5.86e-03 56_[-1(3.86e-05)]_23 chr14:95981720-95981820 3.52e-06 13_[+5(2.48e-08)]_9_[-3(1.84e-06)]_\ 37 chr2:116117848-116117948 5.79e-03 22_[-7(6.16e-05)]_5_[-1(7.43e-05)]_\ 41 chr9:32268429-32268529 5.38e-01 100 chr3:78166855-78166955 2.25e-01 81_[-7(3.48e-05)]_8 chr8:57017841-57017941 1.62e-05 52_[-4(9.92e-13)]_18 chr15:32778945-32779045 5.02e-02 25_[+9(6.86e-05)]_64 chr13:6178443-6178543 1.46e-01 47_[+7(2.48e-05)]_42 chr18:46132453-46132553 5.96e-01 100 chr8:82693048-82693148 8.15e-05 15_[-7(3.04e-06)]_74 chr14:77351912-77352012 7.79e-01 100 chr6:78760900-78761000 9.66e-01 100 chr14:38684444-38684544 1.21e-09 25_[+5(4.68e-12)]_[+5(8.29e-05)]_15 chr8:127774537-127774637 3.81e-01 100 chr2:135353884-135353984 4.26e-04 19_[+7(6.84e-05)]_54_\ [+10(8.03e-07)]_2 chrX:70574196-70574296 1.02e-03 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5.42e-01 100 chr13:6120817-6120917 7.93e-01 100 chr13:42603404-42603504 3.71e-01 100 chr10:97313545-97313645 6.19e-01 100 chr15:13059452-13059552 5.47e-01 100 chr1:28897504-28897604 5.96e-01 100 chr13:42760856-42760956 9.98e-01 100 chr5:101365305-101365405 8.64e-04 6_[-1(5.39e-05)]_19_[-1(3.54e-05)]_\ 20_[+7(5.18e-05)]_2 chr2:104305631-104305731 3.36e-02 33_[-9(8.47e-05)]_56 chr12:31773546-31773646 2.55e-01 100 chr5:124162536-124162636 1.97e-04 4_[+2(1.28e-07)]_81 chr11:47481386-47481486 1.86e-02 57_[-2(1.23e-05)]_28 chr5:29004661-29004761 1.05e-01 100 chr5:18086986-18087086 1.36e-09 [-5(3.59e-13)]_16_[-1(1.75e-07)]_33 chr18:75562729-75562829 1.69e-01 48_[-9(5.07e-05)]_41 chr17:47152312-47152412 5.96e-01 100 chr6:77578794-77578894 9.95e-01 100 chr15:26160372-26160472 4.98e-01 100 chr6:85218756-85218856 3.03e-04 22_[-3(3.17e-06)]_27_[+5(7.32e-05)]_\ 10 chr16:29331268-29331368 4.20e-05 28_[-4(8.61e-05)]_1_[+7(9.62e-05)]_\ 30 chr11:81065392-81065492 2.70e-03 13_[-7(8.19e-06)]_76 chr11:10562749-10562849 5.13e-04 37_[+3(6.36e-05)]_26_[+7(5.18e-05)]_\ 15 chr11:46190071-46190171 2.83e-04 33_[+5(1.48e-07)]_37 chr3:65585426-65585526 2.44e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-40.local ********************************************************************************