******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.IT_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:90273171-90273271 1.0000 100 chr17:84100635-84100735 1.0000 100 chr6:111172944-111173044 1.0000 100 chr14:100970908-10097100 1.0000 100 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chr6:85236968-85237068 1.0000 100 chr12:98705958-98706058 1.0000 100 chr5:55457560-55457660 1.0000 100 chr5:58175484-58175584 1.0000 100 chr13:99849579-99849679 1.0000 100 chr9:46082418-46082518 1.0000 100 chr10:13596021-13596121 1.0000 100 chr4:148356531-148356631 1.0000 100 chr18:11966960-11967060 1.0000 100 chr4:87775705-87775805 1.0000 100 chr17:94226093-94226193 1.0000 100 chr12:40511713-40511813 1.0000 100 chr4:90729153-90729253 1.0000 100 chr1:142441542-142441642 1.0000 100 chr18:14463272-14463372 1.0000 100 chr5:71842203-71842303 1.0000 100 chr1:106569650-106569750 1.0000 100 chr1:139225083-139225183 1.0000 100 chr13:42996202-42996302 1.0000 100 chr16:34209065-34209165 1.0000 100 chr15:72390383-72390483 1.0000 100 chr1:105947027-105947127 1.0000 100 chr19:19644407-19644507 1.0000 100 chr11:12496689-12496789 1.0000 100 chr4:70032432-70032532 1.0000 100 chr16:79718154-79718254 1.0000 100 chr7:80776081-80776181 1.0000 100 chr5:49370661-49370761 1.0000 100 chr18:47857559-47857659 1.0000 100 chr12:82731506-82731606 1.0000 100 chr5:36719076-36719176 1.0000 100 chr18:43633406-43633506 1.0000 100 chr18:79207560-79207660 1.0000 100 chr5:103497372-103497472 1.0000 100 chr4:87273402-87273502 1.0000 100 chr11:118793498-11879359 1.0000 100 chr1:130775890-130775990 1.0000 100 chr18:53328158-53328258 1.0000 100 chr15:64246374-64246474 1.0000 100 chr4:50507443-50507543 1.0000 100 chr7:132005957-132006057 1.0000 100 chr4:139258522-139258622 1.0000 100 chr9:50067708-50067808 1.0000 100 chr11:94881155-94881255 1.0000 100 chrX:140871130-140871230 1.0000 100 chr12:11762992-11763092 1.0000 100 chr2:6464039-6464139 1.0000 100 chr8:97958130-97958230 1.0000 100 chr4:125856158-125856258 1.0000 100 chr1:22748555-22748655 1.0000 100 chr17:51645793-51645893 1.0000 100 chr9:100917054-100917154 1.0000 100 chr12:119792557-11979265 1.0000 100 chr13:35226095-35226195 1.0000 100 chr18:75579555-75579655 1.0000 100 chr18:24731016-24731116 1.0000 100 chr4:66894484-66894584 1.0000 100 chr15:45020937-45021037 1.0000 100 chr1:81098890-81098990 1.0000 100 chr19:53065943-53066043 1.0000 100 chr15:19273483-19273583 1.0000 100 chr13:5398967-5399067 1.0000 100 chr13:40651096-40651196 1.0000 100 chr10:98101282-98101382 1.0000 100 chr15:24407607-24407707 1.0000 100 chr1:106069517-106069617 1.0000 100 chr13:41677214-41677314 1.0000 100 chr5:132663783-132663883 1.0000 100 chr2:117308929-117309029 1.0000 100 chr12:32138320-32138420 1.0000 100 chr6:5442658-5442758 1.0000 100 chr11:54727620-54727720 1.0000 100 chr5:52213073-52213173 1.0000 100 chr5:41076356-41076456 1.0000 100 chr18:85155056-85155156 1.0000 100 chr17:63211072-63211172 1.0000 100 chr6:96044339-96044439 1.0000 100 chr15:32129032-32129132 1.0000 100 chr6:101226506-101226606 1.0000 100 chr16:49164301-49164401 1.0000 100 chr11:87955078-87955178 1.0000 100 chr11:13512860-13512960 1.0000 100 chr11:52648201-52648301 1.0000 100 chr3:79927068-79927168 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.IT_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.IT_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.IT_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.IT_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.269 C 0.231 G 0.231 T 0.269 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L5.IT_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.284 C 0.216 G 0.216 T 0.284 ******************************************************************************** ******************************************************************************** MOTIF GGSWGGSDGKRGGVRGVKGDG MEME-1 width = 21 sites = 118 llr = 1120 E-value = 4.2e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSWGGSDGKRGGVRGVKGDG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:142:24:23113422123: pos.-specific C 1231:14111::231132211 probability G 665188429467733645639 matrix T :1:4:1131312::2113:31 bits 2.2 2.0 1.8 1.5 * * Relative 1.3 ** * * Entropy 1.1 ** * * * (13.7 bits) 0.9 * ** * * * 0.7 *** ** * *** * * * 0.4 *** *** * **** **** * 0.2 ******* *********** * 0.0 --------------------- Multilevel GGGAGGGAGGGGGCAGGGGAG consensus ACCT CT TA AG CTCT sequence G GT A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSWGGSDGKRGGVRGVKGDG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr1:121096597-121096697 + 4 1.89e-10 CTA ggggggctggggggggggggg tgtggaggga chr10:63710153-63710253 - 44 1.31e-09 ACAGATCTGT GGCTGGCTGTGGGCGGGCGTG GAAGCATGAC chr6:31179802-31179902 - 23 1.23e-08 CTCAGCACTC AGGAGGCAGGGGCAGGGGCAG GCAGATGTCT chr4:111364719-111364819 - 43 1.23e-08 TCAGAGGCAG GGGTGGGTGGGTGGGGCGAGG GACAAGGCTG chr19:53065943-53066043 + 73 1.48e-08 CATTTACAGG GGGTGGCGTGGGGGTGGGGGG AATGGAG chr13:59252576-59252676 - 20 5.03e-08 GAGGAGACCA GGCAGGCAGTGGAGAGAGGAG ACCAGGCAGG chr2:173427930-173428030 + 47 5.03e-08 agaatgtaag agctggaaggtgggaggggtg ccgtgagcac chr14:64591606-64591706 - 53 5.03e-08 TGCTTCCTGG GGGTGGGTTGTGGGGGGGGGG AGGAGGCCAG chr6:50054571-50054671 + 42 5.03e-08 GCCTTGGCTG GTGAGGCTGGAGGAGGCGGCG GCAGGTGCTC chr3:50987797-50987897 - 28 6.98e-08 TTGAGAAGGC AGCTGGCAGGGTGATGCGGGG AATCTGCAAG chr9:63124000-63124100 + 7 1.79e-07 GAGCAG GGCTGGCGGTGTGCAGAGCAG CTGGAGGCTC chr11:52648201-52648301 + 5 2.41e-07 AGGC AGCAGGGAGTGAGAGGCTGAG CCGAAGCTGA chr4:125856158-125856258 + 42 2.41e-07 caaaggtgtg ggcagggtgtgcggagctgtg tcaacagtga chr7:80066941-80067041 - 15 2.41e-07 CAACTTAAAA AGGAGGCTGGAGACAGAGGAG GTGGTCCTGA chr4:76038425-76038525 - 8 3.23e-07 GAGGGAAGGA GGGAGGAAGAGAGGGAGGGAG GGAGGGA chr1:28214225-28214325 - 43 4.29e-07 GAAGGCTGGA GGCTGGCTGGGGCAAAAGCAG GGTAAGGATG chr5:25830857-25830957 - 37 4.29e-07 GAGAGGGAGA GGGAGGGAGGGAGAGAGAGAG AGAGAGAGTG chr13:4776813-4776913 + 19 4.94e-07 TACAGAAAAT GGACAGAAGGGGGCAGCGGTG TCTGCTCAAC chr13:93440150-93440250 - 61 4.94e-07 TTGTGTGTGT GGGGGGGGGTTGGATGAGGGG TAGGTGTGTG chr2:149877813-149877913 - 74 4.94e-07 TGGGGG AGGTGGGAGTGGGAGCTGGTG AAATCTTGTC chr2:59533454-59533554 - 23 5.67e-07 GCCAGGACAA GCCAGGCAGGGGGTGGGGATG CTCAGCCTCA chr10:68635464-68635564 + 26 7.45e-07 TTCCAGAGAC AGAAggaaggggggagggggt agtttctctt chr2:168128391-168128491 - 3 7.45e-07 ATGGCTGCCC AGGAAGCAGTGGAGGGGCGGG GA chr13:76878950-76879050 - 30 7.45e-07 TATACACAGT GCCAGGAAGTAGGATGCTGTG CTAACGAGCC chr17:66189959-66190059 - 43 9.74e-07 AGGATTCACA GGGAGTGGGTGTGCAGCTCGG CTTCCCCATG chr7:57471250-57471350 - 24 9.74e-07 TAGGAAGTAT GGCAGTGTGTAGGCAGGCATG CTGGTGGAGG chr4:111001583-111001683 - 78 1.11e-06 GG GTCAGGAGGCAGGGAGGTGTG AGGGGGAAGT chr2:5165493-5165593 + 32 1.27e-06 ATCTGGGACA AGGAGGGTGGGGGCAAAGCAC TATATTTGAC chr6:96044339-96044439 - 26 1.86e-06 AAAGAGGCAG AGGAGGAAGAGGGGGTGGAGG AGAATTACGG chr17:47140924-47141024 + 79 1.86e-06 CCTGGAGGGG AGGAGGGTGGATGCACGCGCG C chr15:31305133-31305233 + 24 1.86e-06 TCTCCCTCCC AGGAGGCAGAGGCAGAGTCAG GCTGTGCTGC chr17:84100635-84100735 - 68 2.38e-06 TTCTTCCAGA GCCTGCGTGGGGGAAACTGTG GCGAGAGCCA chr2:156673219-156673319 + 14 2.69e-06 AGCAAGAACT GGCAGGTTGGGGCGTCGGGCG CCATCCgctc chr1:25118914-25119014 + 61 2.69e-06 TCTGAGAAAG AGGTGTGTGGGTGGGAAGGAG GAAGGGGGAG chr19:60310515-60310615 - 70 2.69e-06 TCCTCCCTCT GTCCAGCAGAGGGCAGGCGAG GTAACAAAAT chr15:52161469-52161569 - 28 3.04e-06 TTCAGAGTGG GCGTGGGAGTTGGCAGGCCAC GTTAAGCATC chr9:122605254-122605354 - 4 3.43e-06 AGTCTGCTGA GGGAGGCAGAGGGACCCAGGG CTG chr17:8592595-8592695 - 23 3.86e-06 CAGCAGACGC GGGAAGATGAGGGGATGGCGG AGCAGGGAGG chr3:149233542-149233642 - 36 3.86e-06 TACTACAGCA GTTAGGAAGTGGGGAGCTGAG AGTCTTCAGA chr8:32290084-32290184 + 72 4.34e-06 CACACAGCTG AGGAGGATGAGGCCCGCTGAG TTGGATCA chr1:168288298-168288398 - 56 4.34e-06 GGGCAGCTCT GCCTGTCTGCGGGCTGCTGCG ACCCACTCGT chr13:103806056-10380615 + 40 4.88e-06 TGGGAGTCCT GGCAGCCAGTAGGCAAGCCTG ACTGTTGGCA chr2:28412907-28413007 + 7 4.88e-06 GAAAGG ACGAGGCAGATGGCTCGTGGG AAGGCTGGTG chr11:54727620-54727720 - 40 5.48e-06 CTCTTGAGAT GTGAGGGAGGGTGGAGCCCAC GGCACCCAGG chr5:36719076-36719176 - 37 5.48e-06 GTGAGGAAAT GGGAGGCTGGGCCGAGTGAGG ACCCATGGAG chr8:91643657-91643757 + 19 5.48e-06 ACAGTGGCAT GCATAGGAGTAGCAGGCGGTG TCTAATCAGA chr18:43633406-43633506 + 69 6.14e-06 CAATATCAGT AAGTGGAGGGAGGAGGAGGAG GCTACATTTA chr14:28267317-28267417 + 57 6.14e-06 GATGCTCTGT GGCAGTGGGTTGGCAAGGATG CCCCAGAACT chr3:37548044-37548144 + 34 6.14e-06 AGACTCTCTG GGGTGGGGTGGGGGAGAGCTT GGTGAGGGGG chr2:9646449-9646549 - 62 6.14e-06 CTCCTCATAT AGAATGCAGTGGGCAGAGGAG CACTGCGCTC chr3:151913852-151913952 + 56 6.88e-06 AGGAAGTTCC GGTGAGGAGTAGGGGGCGGGG TGCAGGGTGG chr8:102694601-102694701 - 5 6.88e-06 ATGCATCTGG AGCAGGGGGGTGGATGGTGGT GGTA chr13:56790644-56790744 + 36 6.88e-06 GTGTCTAGGT GTGGGGGTGGTGGCTAGTGTG CACAAGCAGC chr3:134202673-134202773 - 2 6.88e-06 ACTGCACACC ATCGGGTTGCGGGGAGGGGGG G chr12:98705958-98706058 - 29 7.70e-06 AATAGAAAAA GGGTGCAGTGAGGGAGGTGTG GACAGATTGT chr4:148356531-148356631 - 77 8.60e-06 GCC CGGAAGCTGCAGGGTGCTGGG CTCTGGCCTT chr8:115302422-115302522 - 34 8.60e-06 GCAGGGCTGG AGAAGGCAGAAGGGGCAGCAG CTGCTTCTAA chr15:82948393-82948493 - 58 8.60e-06 CCACAGCCAT GCCAAGCTGGAGCCAGATCTG CGGAAAGCCA chr10:46738184-46738284 - 5 8.60e-06 AGAGATCTGG AGGAAGTTGTGGGAGGGCAAG AACA chr1:90273171-90273271 - 59 8.60e-06 GCTGACATGT GGGTGGAGGAAAGAGAGCGAG AGATCCGTTT chr1:152522167-152522267 - 20 9.61e-06 GGGTGTGGGT GTGTGGGTGTTTGCAGACGCG TGCCAAGCTC chr5:74313504-74313604 - 17 9.61e-06 ATAGCAGCAA GCCAGGCAGCCAGCTGGGGTG AGGGCAGAGG chr11:86963775-86963875 + 3 1.07e-05 CG GGGTAGGAGGAAGGAACCCTG CCAGTCTAGC chr15:62779370-62779470 - 27 1.07e-05 TGTGCTCAGG AGGTGTAGGCAGGCAGAGCAG AAGCTCACTG chr4:100707350-100707450 - 28 1.07e-05 CTGTGTCATG GGGAAGATGGAGAGGGCTAGG GAGAGGGAGG chr16:75091936-75092036 - 5 1.07e-05 AAAGGGAGCT GTGTGGTAGGTGGCTGAGAGG AAGA chr1:105947027-105947127 + 37 1.19e-05 AGATGTAGAA ATCAGGGGGAAGGAAGATCTG GCGCAAGCAG chr15:64021193-64021293 + 54 1.19e-05 gagatggttt ggatgtagggggcatgctgtg tgataattac chr17:59286739-59286839 + 58 1.33e-05 TTCAGAAGCA ACACAGCTGGAGCCGGGGGAG GAGGTGGAGA chr13:103211977-10321207 - 38 1.33e-05 CCTGCAGATT CGAAGGATGTAGGGGGTGGGG TGCTGGTCGT chr4:40110685-40110785 + 33 1.48e-05 GGTCTCAAGC AGGTGGGAGGAAGAGGCAACG TGTTAAAGAG chr18:11954340-11954440 + 36 1.48e-05 AGAGACAGAT GGATGGCTGAAGCCATGTGAG TTCACAGCAG chr8:31779616-31779716 - 4 1.64e-05 ACATTACTAT GGCTAGCATGGGGGTGGACAG CTG chr7:80776081-80776181 - 60 1.82e-05 GTGTGCATGT GGGTGTCTGGGTGCGTATGCG CCATCTGCTC chr10:3810438-3810538 - 75 2.02e-05 AGCAG GGGTGGAAGACAGAAGGGCCG AGGGATGTGT chr13:5398967-5399067 - 75 2.24e-05 TGATA AGATGGTGGGGGGGGGGCGAT AAGAATCTCT chr18:68562828-68562928 + 19 2.48e-05 AAGGTGGCAG GCGCAGTAGGATGAGGGTGGG GAGAGCCGGA chr6:56651941-56652041 + 68 2.48e-05 AGCTCCTGCT GGCTGTGCTTGGCCGGCGGCG GTTCCCAGGC chr17:89081372-89081472 + 40 2.74e-05 TTAGAATCCA GGGTGGCTGTGCCAAACTATG CCTGGCATGA chr13:40651096-40651196 + 40 3.03e-05 GACTGGGCAT GCGCGGCCCCGGGCAGAGAAG ACGCTTGCAG chr9:43982434-43982534 - 78 3.03e-05 CA GGGTGTGGGTGAGCTAGCCCG GAGAGCATGA chr1:159386445-159386545 + 23 3.03e-05 GTAGCGGAGA GTGTGGGAGAATCCCGGGCTG CAGCCATCTG chr4:66894484-66894584 + 66 3.34e-05 ACACCCTGGG AGGAGGGCTGGTGAAGGTGTC AACTTCCAGT chr3:105488387-105488487 - 75 3.68e-05 CTCTG GGGAGCGACAAGCAAGAGGAG AGTGCCAGGG chr18:85155056-85155156 - 31 4.92e-05 AAGCTGGGAA GCCCGTGAGGGGGATGATTGG CTGGACTTTG chr2:117308929-117309029 - 24 4.92e-05 TCTGAAAATA GACTGGGGGTGGGTGGTGGGG AATACACAAG chr3:105517114-105517214 + 48 4.92e-05 AGAACCTCAT GGGCGGAGGCAGGAGCTGAGG GATTTTGCTA chr10:5449946-5450046 - 38 4.92e-05 GCTGATGGCA GGGAGGCATGGGAGTAGGTGG CTAGAGTAGG chr5:128925116-128925216 - 16 5.40e-05 GCCTCTGTGT AGATGGCAGCGTGGAGAGGCT AAAGAACAGC chr1:40945607-40945707 + 33 5.93e-05 ACGGAATCTG GGATGGGTGTTAAGTGCTGAG TGCTCACTGA chr13:12083699-12083799 - 38 5.93e-05 CCAGATAAGC AGATGCGTGTGGGCCGAGGGC TTGTTAGTCT chr4:10923090-10923190 + 56 5.93e-05 TGCAGAATGA GTAAGGCCGGAGCCAGGGAAC TCTGCCAACT chr7:68829775-68829875 - 37 6.51e-05 GCAAAGAAGC CCGAGGCGGTTGCCTGCTAGG TGCCTGTCCA chr2:29526272-29526372 + 13 7.13e-05 gatggcagct cgctggctgcgaccaagtcgg ggcatgtgca chr17:65374475-65374575 - 68 7.82e-05 TGCTGTCAGA GGATGGGGGCGGCCACCGTCG TGACAGCAGC chrX:165666816-165666916 + 14 7.82e-05 ccagagagat gccagcgagagagaatggcgg aaacccgtcc chr14:19946168-19946268 - 21 8.55e-05 GCACAGAGTA GACTGGAGGTGTCGAGAGCTG GTGGGAGGCA chr6:5442658-5442758 - 27 9.35e-05 GTCCGCCAAA GCCAGCGAGTAGGCGACAATG ACTCAGCGAC chr11:94881155-94881255 - 64 9.35e-05 CCAGCTCCAG ACGTGGCAGGGTGAGAGCATT GAGTGGTTTC chr17:67584463-67584563 + 19 9.35e-05 CCTTCTCTCC GTCCAGATGGAGGGAAGAGAG CCTACTGACC chr9:115570893-115570993 - 68 9.35e-05 GAAGCCAGAA GCCTGGGACGGTGAATCTGCG TATGTTAAAG chr13:113699877-11369997 - 43 1.12e-04 TGGACACATT GCGCATGCGTAGGCACGCGTG CCTTCTGTAA chr16:34209065-34209165 - 26 1.33e-04 CTGAGCTCCT GTCTGTCTGAAGGACCGTGAG AGGCAGGGAG chr2:76469654-76469754 - 7 1.33e-04 GCTCCTCTGG AGCGGGGATTGAACGGAGGTG CCGTGT chr5:129137358-129137458 - 42 1.33e-04 TAGAATGTAT GTGCGTGAGCGGGCTGTGGAC CAGACTGTGG chr5:132663783-132663883 + 41 1.45e-04 TGGTTTGATG GCACGGGGGCGTGACAGGCTG CAAGGGTGTT chr7:39544120-39544220 - 80 1.57e-04 . GCGGAGCCGAGGAGAGCTAGG CAGATTCCGG chr14:9491659-9491759 - 78 1.71e-04 GT GGGAATGTGTGGGAACACAGC GAGTCCTTCT chr1:55838111-55838211 + 39 1.86e-04 CAGGAGTCTC ACGAGGCAGTGCGAGAATGCC TGCCTCTACA chr5:4979525-4979625 - 19 2.19e-04 GCAGATGGAC ATGATGCGGTGTCCGGGGATG GTATGGCGAG chr6:145359831-145359931 - 35 2.58e-04 ATAGCTTAAG ACGTGGGCGTTTCAACGTCAG CTTTCCTTAG chr14:117918685-11791878 - 24 2.79e-04 CATTTAACTA ACGGATGCGGAGAGAGCGGTG CTTTGAGTAC chr11:75313680-75313780 - 22 3.27e-04 CCGTCACTTA GGTTGCGGGCGTGAGGAAGAG TGCTGAATCA chr5:111761960-111762060 + 33 4.12e-04 CCCCATCCGT ATGCGGGCGGCGCCTCCCGGG ACTGCAGTCT chr11:118793498-11879359 + 4 4.44e-04 GCG GCGTGGGCGGTAGGTACCAGC CTCCTGGCAA chr15:32129032-32129132 - 33 4.79e-04 TCCCCTCCCT TCGAGGCTCGGAGATGATGTG GAAAAGGATG chr15:78026450-78026550 - 77 6.42e-04 TGT CCGTGGCTCGAGAATGCTATG TGACACTATT chr2:30707890-30707990 - 68 7.95e-04 CCCGGGCTCG CGCCGGATCGGGGCGCGCCTC GCAGCGGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSWGGSDGKRGGVRGVKGDG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:121096597-121096697 1.9e-10 3_[+1]_76 chr10:63710153-63710253 1.3e-09 43_[-1]_36 chr6:31179802-31179902 1.2e-08 22_[-1]_57 chr4:111364719-111364819 1.2e-08 42_[-1]_37 chr19:53065943-53066043 1.5e-08 72_[+1]_7 chr13:59252576-59252676 5e-08 19_[-1]_60 chr2:173427930-173428030 5e-08 46_[+1]_33 chr14:64591606-64591706 5e-08 52_[-1]_27 chr6:50054571-50054671 5e-08 41_[+1]_38 chr3:50987797-50987897 7e-08 27_[-1]_52 chr9:63124000-63124100 1.8e-07 6_[+1]_73 chr11:52648201-52648301 2.4e-07 4_[+1]_75 chr4:125856158-125856258 2.4e-07 41_[+1]_38 chr7:80066941-80067041 2.4e-07 14_[-1]_65 chr4:76038425-76038525 3.2e-07 7_[-1]_72 chr1:28214225-28214325 4.3e-07 42_[-1]_37 chr5:25830857-25830957 4.3e-07 36_[-1]_43 chr13:4776813-4776913 4.9e-07 18_[+1]_61 chr13:93440150-93440250 4.9e-07 60_[-1]_19 chr2:149877813-149877913 4.9e-07 73_[-1]_6 chr2:59533454-59533554 5.7e-07 22_[-1]_57 chr10:68635464-68635564 7.5e-07 25_[+1]_54 chr2:168128391-168128491 7.5e-07 2_[-1]_77 chr13:76878950-76879050 7.5e-07 29_[-1]_50 chr17:66189959-66190059 9.7e-07 42_[-1]_37 chr7:57471250-57471350 9.7e-07 23_[-1]_56 chr4:111001583-111001683 1.1e-06 77_[-1]_2 chr2:5165493-5165593 1.3e-06 31_[+1]_48 chr6:96044339-96044439 1.9e-06 25_[-1]_54 chr17:47140924-47141024 1.9e-06 78_[+1]_1 chr15:31305133-31305233 1.9e-06 23_[+1]_56 chr17:84100635-84100735 2.4e-06 67_[-1]_12 chr2:156673219-156673319 2.7e-06 13_[+1]_66 chr1:25118914-25119014 2.7e-06 60_[+1]_19 chr19:60310515-60310615 2.7e-06 69_[-1]_10 chr15:52161469-52161569 3e-06 27_[-1]_52 chr9:122605254-122605354 3.4e-06 3_[-1]_76 chr17:8592595-8592695 3.9e-06 22_[-1]_57 chr3:149233542-149233642 3.9e-06 35_[-1]_44 chr8:32290084-32290184 4.3e-06 71_[+1]_8 chr1:168288298-168288398 4.3e-06 55_[-1]_24 chr13:103806056-10380615 4.9e-06 39_[+1]_40 chr2:28412907-28413007 4.9e-06 6_[+1]_73 chr11:54727620-54727720 5.5e-06 39_[-1]_40 chr5:36719076-36719176 5.5e-06 36_[-1]_43 chr8:91643657-91643757 5.5e-06 18_[+1]_61 chr18:43633406-43633506 6.1e-06 68_[+1]_11 chr14:28267317-28267417 6.1e-06 56_[+1]_23 chr3:37548044-37548144 6.1e-06 33_[+1]_46 chr2:9646449-9646549 6.1e-06 61_[-1]_18 chr3:151913852-151913952 6.9e-06 55_[+1]_24 chr8:102694601-102694701 6.9e-06 4_[-1]_75 chr13:56790644-56790744 6.9e-06 35_[+1]_44 chr3:134202673-134202773 6.9e-06 1_[-1]_78 chr12:98705958-98706058 7.7e-06 28_[-1]_51 chr4:148356531-148356631 8.6e-06 76_[-1]_3 chr8:115302422-115302522 8.6e-06 33_[-1]_46 chr15:82948393-82948493 8.6e-06 57_[-1]_22 chr10:46738184-46738284 8.6e-06 4_[-1]_75 chr1:90273171-90273271 8.6e-06 58_[-1]_21 chr1:152522167-152522267 9.6e-06 19_[-1]_60 chr5:74313504-74313604 9.6e-06 16_[-1]_63 chr11:86963775-86963875 1.1e-05 2_[+1]_77 chr15:62779370-62779470 1.1e-05 26_[-1]_53 chr4:100707350-100707450 1.1e-05 27_[-1]_52 chr16:75091936-75092036 1.1e-05 4_[-1]_75 chr1:105947027-105947127 1.2e-05 36_[+1]_43 chr15:64021193-64021293 1.2e-05 53_[+1]_26 chr17:59286739-59286839 1.3e-05 57_[+1]_22 chr13:103211977-10321207 1.3e-05 37_[-1]_42 chr4:40110685-40110785 1.5e-05 32_[+1]_47 chr18:11954340-11954440 1.5e-05 35_[+1]_44 chr8:31779616-31779716 1.6e-05 3_[-1]_76 chr7:80776081-80776181 1.8e-05 59_[-1]_20 chr10:3810438-3810538 2e-05 74_[-1]_5 chr13:5398967-5399067 2.2e-05 74_[-1]_5 chr18:68562828-68562928 2.5e-05 18_[+1]_61 chr6:56651941-56652041 2.5e-05 67_[+1]_12 chr17:89081372-89081472 2.7e-05 39_[+1]_40 chr13:40651096-40651196 3e-05 39_[+1]_40 chr9:43982434-43982534 3e-05 77_[-1]_2 chr1:159386445-159386545 3e-05 22_[+1]_57 chr4:66894484-66894584 3.3e-05 65_[+1]_14 chr3:105488387-105488487 3.7e-05 74_[-1]_5 chr18:85155056-85155156 4.9e-05 30_[-1]_49 chr2:117308929-117309029 4.9e-05 23_[-1]_56 chr3:105517114-105517214 4.9e-05 47_[+1]_32 chr10:5449946-5450046 4.9e-05 37_[-1]_42 chr5:128925116-128925216 5.4e-05 15_[-1]_64 chr1:40945607-40945707 5.9e-05 32_[+1]_47 chr13:12083699-12083799 5.9e-05 37_[-1]_42 chr4:10923090-10923190 5.9e-05 55_[+1]_24 chr7:68829775-68829875 6.5e-05 36_[-1]_43 chr2:29526272-29526372 7.1e-05 12_[+1]_67 chr17:65374475-65374575 7.8e-05 67_[-1]_12 chrX:165666816-165666916 7.8e-05 13_[+1]_66 chr14:19946168-19946268 8.6e-05 20_[-1]_59 chr6:5442658-5442758 9.4e-05 26_[-1]_53 chr11:94881155-94881255 9.4e-05 63_[-1]_16 chr17:67584463-67584563 9.4e-05 18_[+1]_61 chr9:115570893-115570993 9.4e-05 67_[-1]_12 chr13:113699877-11369997 0.00011 42_[-1]_37 chr16:34209065-34209165 0.00013 25_[-1]_54 chr2:76469654-76469754 0.00013 6_[-1]_73 chr5:129137358-129137458 0.00013 41_[-1]_38 chr5:132663783-132663883 0.00014 40_[+1]_39 chr7:39544120-39544220 0.00016 79_[-1] chr14:9491659-9491759 0.00017 77_[-1]_2 chr1:55838111-55838211 0.00019 38_[+1]_41 chr5:4979525-4979625 0.00022 18_[-1]_61 chr6:145359831-145359931 0.00026 34_[-1]_45 chr14:117918685-11791878 0.00028 23_[-1]_56 chr11:75313680-75313780 0.00033 21_[-1]_58 chr5:111761960-111762060 0.00041 32_[+1]_47 chr11:118793498-11879359 0.00044 3_[+1]_76 chr15:32129032-32129132 0.00048 32_[-1]_47 chr15:78026450-78026550 0.00064 76_[-1]_3 chr2:30707890-30707990 0.00079 67_[-1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSWGGSDGKRGGVRGVKGDG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSWGGSDGKRGGVRGVKGDG width=21 seqs=118 chr1:121096597-121096697 ( 4) GGGGGGCTGGGGGGGGGGGGG 1 chr10:63710153-63710253 ( 44) GGCTGGCTGTGGGCGGGCGTG 1 chr6:31179802-31179902 ( 23) AGGAGGCAGGGGCAGGGGCAG 1 chr4:111364719-111364819 ( 43) GGGTGGGTGGGTGGGGCGAGG 1 chr19:53065943-53066043 ( 73) GGGTGGCGTGGGGGTGGGGGG 1 chr13:59252576-59252676 ( 20) GGCAGGCAGTGGAGAGAGGAG 1 chr2:173427930-173428030 ( 47) AGCTGGAAGGTGGGAGGGGTG 1 chr14:64591606-64591706 ( 53) GGGTGGGTTGTGGGGGGGGGG 1 chr6:50054571-50054671 ( 42) GTGAGGCTGGAGGAGGCGGCG 1 chr3:50987797-50987897 ( 28) AGCTGGCAGGGTGATGCGGGG 1 chr9:63124000-63124100 ( 7) GGCTGGCGGTGTGCAGAGCAG 1 chr11:52648201-52648301 ( 5) AGCAGGGAGTGAGAGGCTGAG 1 chr4:125856158-125856258 ( 42) GGCAGGGTGTGCGGAGCTGTG 1 chr7:80066941-80067041 ( 15) AGGAGGCTGGAGACAGAGGAG 1 chr4:76038425-76038525 ( 8) GGGAGGAAGAGAGGGAGGGAG 1 chr1:28214225-28214325 ( 43) GGCTGGCTGGGGCAAAAGCAG 1 chr5:25830857-25830957 ( 37) GGGAGGGAGGGAGAGAGAGAG 1 chr13:4776813-4776913 ( 19) GGACAGAAGGGGGCAGCGGTG 1 chr13:93440150-93440250 ( 61) GGGGGGGGGTTGGATGAGGGG 1 chr2:149877813-149877913 ( 74) AGGTGGGAGTGGGAGCTGGTG 1 chr2:59533454-59533554 ( 23) GCCAGGCAGGGGGTGGGGATG 1 chr10:68635464-68635564 ( 26) AGAAGGAAGGGGGGAGGGGGT 1 chr2:168128391-168128491 ( 3) AGGAAGCAGTGGAGGGGCGGG 1 chr13:76878950-76879050 ( 30) GCCAGGAAGTAGGATGCTGTG 1 chr17:66189959-66190059 ( 43) GGGAGTGGGTGTGCAGCTCGG 1 chr7:57471250-57471350 ( 24) GGCAGTGTGTAGGCAGGCATG 1 chr4:111001583-111001683 ( 78) GTCAGGAGGCAGGGAGGTGTG 1 chr2:5165493-5165593 ( 32) AGGAGGGTGGGGGCAAAGCAC 1 chr6:96044339-96044439 ( 26) AGGAGGAAGAGGGGGTGGAGG 1 chr17:47140924-47141024 ( 79) AGGAGGGTGGATGCACGCGCG 1 chr15:31305133-31305233 ( 24) AGGAGGCAGAGGCAGAGTCAG 1 chr17:84100635-84100735 ( 68) GCCTGCGTGGGGGAAACTGTG 1 chr2:156673219-156673319 ( 14) GGCAGGTTGGGGCGTCGGGCG 1 chr1:25118914-25119014 ( 61) AGGTGTGTGGGTGGGAAGGAG 1 chr19:60310515-60310615 ( 70) GTCCAGCAGAGGGCAGGCGAG 1 chr15:52161469-52161569 ( 28) GCGTGGGAGTTGGCAGGCCAC 1 chr9:122605254-122605354 ( 4) GGGAGGCAGAGGGACCCAGGG 1 chr17:8592595-8592695 ( 23) GGGAAGATGAGGGGATGGCGG 1 chr3:149233542-149233642 ( 36) GTTAGGAAGTGGGGAGCTGAG 1 chr8:32290084-32290184 ( 72) AGGAGGATGAGGCCCGCTGAG 1 chr1:168288298-168288398 ( 56) GCCTGTCTGCGGGCTGCTGCG 1 chr13:103806056-10380615 ( 40) GGCAGCCAGTAGGCAAGCCTG 1 chr2:28412907-28413007 ( 7) ACGAGGCAGATGGCTCGTGGG 1 chr11:54727620-54727720 ( 40) GTGAGGGAGGGTGGAGCCCAC 1 chr5:36719076-36719176 ( 37) GGGAGGCTGGGCCGAGTGAGG 1 chr8:91643657-91643757 ( 19) GCATAGGAGTAGCAGGCGGTG 1 chr18:43633406-43633506 ( 69) AAGTGGAGGGAGGAGGAGGAG 1 chr14:28267317-28267417 ( 57) GGCAGTGGGTTGGCAAGGATG 1 chr3:37548044-37548144 ( 34) GGGTGGGGTGGGGGAGAGCTT 1 chr2:9646449-9646549 ( 62) AGAATGCAGTGGGCAGAGGAG 1 chr3:151913852-151913952 ( 56) GGTGAGGAGTAGGGGGCGGGG 1 chr8:102694601-102694701 ( 5) AGCAGGGGGGTGGATGGTGGT 1 chr13:56790644-56790744 ( 36) GTGGGGGTGGTGGCTAGTGTG 1 chr3:134202673-134202773 ( 2) ATCGGGTTGCGGGGAGGGGGG 1 chr12:98705958-98706058 ( 29) GGGTGCAGTGAGGGAGGTGTG 1 chr4:148356531-148356631 ( 77) CGGAAGCTGCAGGGTGCTGGG 1 chr8:115302422-115302522 ( 34) AGAAGGCAGAAGGGGCAGCAG 1 chr15:82948393-82948493 ( 58) GCCAAGCTGGAGCCAGATCTG 1 chr10:46738184-46738284 ( 5) AGGAAGTTGTGGGAGGGCAAG 1 chr1:90273171-90273271 ( 59) GGGTGGAGGAAAGAGAGCGAG 1 chr1:152522167-152522267 ( 20) GTGTGGGTGTTTGCAGACGCG 1 chr5:74313504-74313604 ( 17) GCCAGGCAGCCAGCTGGGGTG 1 chr11:86963775-86963875 ( 3) GGGTAGGAGGAAGGAACCCTG 1 chr15:62779370-62779470 ( 27) AGGTGTAGGCAGGCAGAGCAG 1 chr4:100707350-100707450 ( 28) GGGAAGATGGAGAGGGCTAGG 1 chr16:75091936-75092036 ( 5) GTGTGGTAGGTGGCTGAGAGG 1 chr1:105947027-105947127 ( 37) ATCAGGGGGAAGGAAGATCTG 1 chr15:64021193-64021293 ( 54) GGATGTAGGGGGCATGCTGTG 1 chr17:59286739-59286839 ( 58) ACACAGCTGGAGCCGGGGGAG 1 chr13:103211977-10321207 ( 38) CGAAGGATGTAGGGGGTGGGG 1 chr4:40110685-40110785 ( 33) AGGTGGGAGGAAGAGGCAACG 1 chr18:11954340-11954440 ( 36) GGATGGCTGAAGCCATGTGAG 1 chr8:31779616-31779716 ( 4) GGCTAGCATGGGGGTGGACAG 1 chr7:80776081-80776181 ( 60) GGGTGTCTGGGTGCGTATGCG 1 chr10:3810438-3810538 ( 75) GGGTGGAAGACAGAAGGGCCG 1 chr13:5398967-5399067 ( 75) AGATGGTGGGGGGGGGGCGAT 1 chr18:68562828-68562928 ( 19) GCGCAGTAGGATGAGGGTGGG 1 chr6:56651941-56652041 ( 68) GGCTGTGCTTGGCCGGCGGCG 1 chr17:89081372-89081472 ( 40) GGGTGGCTGTGCCAAACTATG 1 chr13:40651096-40651196 ( 40) GCGCGGCCCCGGGCAGAGAAG 1 chr9:43982434-43982534 ( 78) GGGTGTGGGTGAGCTAGCCCG 1 chr1:159386445-159386545 ( 23) GTGTGGGAGAATCCCGGGCTG 1 chr4:66894484-66894584 ( 66) AGGAGGGCTGGTGAAGGTGTC 1 chr3:105488387-105488487 ( 75) GGGAGCGACAAGCAAGAGGAG 1 chr18:85155056-85155156 ( 31) GCCCGTGAGGGGGATGATTGG 1 chr2:117308929-117309029 ( 24) GACTGGGGGTGGGTGGTGGGG 1 chr3:105517114-105517214 ( 48) GGGCGGAGGCAGGAGCTGAGG 1 chr10:5449946-5450046 ( 38) GGGAGGCATGGGAGTAGGTGG 1 chr5:128925116-128925216 ( 16) AGATGGCAGCGTGGAGAGGCT 1 chr1:40945607-40945707 ( 33) GGATGGGTGTTAAGTGCTGAG 1 chr13:12083699-12083799 ( 38) AGATGCGTGTGGGCCGAGGGC 1 chr4:10923090-10923190 ( 56) GTAAGGCCGGAGCCAGGGAAC 1 chr7:68829775-68829875 ( 37) CCGAGGCGGTTGCCTGCTAGG 1 chr2:29526272-29526372 ( 13) CGCTGGCTGCGACCAAGTCGG 1 chr17:65374475-65374575 ( 68) GGATGGGGGCGGCCACCGTCG 1 chrX:165666816-165666916 ( 14) GCCAGCGAGAGAGAATGGCGG 1 chr14:19946168-19946268 ( 21) GACTGGAGGTGTCGAGAGCTG 1 chr6:5442658-5442758 ( 27) GCCAGCGAGTAGGCGACAATG 1 chr11:94881155-94881255 ( 64) ACGTGGCAGGGTGAGAGCATT 1 chr17:67584463-67584563 ( 19) GTCCAGATGGAGGGAAGAGAG 1 chr9:115570893-115570993 ( 68) GCCTGGGACGGTGAATCTGCG 1 chr13:113699877-11369997 ( 43) GCGCATGCGTAGGCACGCGTG 1 chr16:34209065-34209165 ( 26) GTCTGTCTGAAGGACCGTGAG 1 chr2:76469654-76469754 ( 7) AGCGGGGATTGAACGGAGGTG 1 chr5:129137358-129137458 ( 42) GTGCGTGAGCGGGCTGTGGAC 1 chr5:132663783-132663883 ( 41) GCACGGGGGCGTGACAGGCTG 1 chr7:39544120-39544220 ( 80) GCGGAGCCGAGGAGAGCTAGG 1 chr14:9491659-9491759 ( 78) GGGAATGTGTGGGAACACAGC 1 chr1:55838111-55838211 ( 39) ACGAGGCAGTGCGAGAATGCC 1 chr5:4979525-4979625 ( 19) ATGATGCGGTGTCCGGGGATG 1 chr6:145359831-145359931 ( 35) ACGTGGGCGTTTCAACGTCAG 1 chr14:117918685-11791878 ( 24) ACGGATGCGGAGAGAGCGGTG 1 chr11:75313680-75313780 ( 22) GGTTGCGGGCGTGAGGAAGAG 1 chr5:111761960-111762060 ( 33) ATGCGGGCGGCGCCTCCCGGG 1 chr11:118793498-11879359 ( 4) GCGTGGGCGGTAGGTACCAGC 1 chr15:32129032-32129132 ( 33) TCGAGGCTCGGAGATGATGTG 1 chr15:78026450-78026550 ( 77) CCGTGGCTCGAGAATGCTATG 1 chr2:30707890-30707990 ( 68) CGCCGGATCGGGGCGCGCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSWGGSDGKRGGVRGVKGDG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.92868 E= 4.2e-035 10 -209 156 -506 -348 8 148 -98 -107 50 130 -348 58 -97 -167 49 -82 -1353 193 -406 -1353 -167 188 -107 -61 72 91 -248 43 -135 -9 22 -1353 -209 201 -190 -90 -87 97 10 2 -309 139 -126 -116 -267 163 -74 -174 -15 174 -1353 18 68 54 -406 58 -209 57 -48 -61 -87 157 -248 -26 37 100 -248 -226 -35 113 6 -61 3 139 -348 6 -87 41 6 -1353 -121 199 -248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSWGGSDGKRGGVRGVKGDG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 118 E= 4.2e-035 0.305085 0.050847 0.635593 0.008475 0.025424 0.228814 0.601695 0.144068 0.135593 0.305085 0.533898 0.025424 0.423729 0.110169 0.067797 0.398305 0.161017 0.000000 0.822034 0.016949 0.000000 0.067797 0.796610 0.135593 0.186441 0.355932 0.406780 0.050847 0.381356 0.084746 0.203390 0.330508 0.000000 0.050847 0.872881 0.076271 0.152542 0.118644 0.423729 0.305085 0.288136 0.025424 0.567797 0.118644 0.127119 0.033898 0.669492 0.169492 0.084746 0.194915 0.720339 0.000000 0.322034 0.347458 0.313559 0.016949 0.423729 0.050847 0.322034 0.203390 0.186441 0.118644 0.644068 0.050847 0.237288 0.279661 0.432203 0.050847 0.059322 0.169492 0.474576 0.296610 0.186441 0.220339 0.567797 0.025424 0.296610 0.118644 0.288136 0.296610 0.000000 0.093220 0.855932 0.050847 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSWGGSDGKRGGVRGVKGDG MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GC][GC][AT]GG[GC][ATG]G[GT][GA]GG[CAG][AGT]G[GCA][GT][GC][ATG]G -------------------------------------------------------------------------------- Time 497.93 secs. ******************************************************************************** ******************************************************************************** MOTIF CCATCTGYYNB MEME-2 width = 11 sites = 166 llr = 1385 E-value = 3.7e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCATCTGYYNB MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:9:2:::121 pos.-specific C 7a1:8::5333 probability G 2::2::a2133 matrix T :::8:a:3523 bits 2.2 * * 2.0 * * 1.8 * ** 1.5 * *** Relative 1.3 * *** Entropy 1.1 ****** (12.0 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ********* 0.0 ----------- Multilevel CCATCTGCTCC consensus TCGT sequence AG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTGYYNB MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr13:103806056-10380615 - 22 2.85e-07 GCCAGGACTC CCATCTGCTCC CCATCCTCAG chr1:28214225-28214325 + 19 2.85e-07 cTGAGGCTAT CCATCTGCTGC CTCCATCCTT chr9:14242227-14242327 + 62 2.85e-07 AATGGGCTCA CCATCTGCTCC GAGAGCTTTC chr8:33220418-33220518 - 10 7.88e-07 TTCAAGACTA CCATCTGCTGG TTGAAATTG chr5:71842203-71842303 - 80 1.35e-06 ACACTCATGG CCATCTGCTCT TACTTCTGCT chr6:40070925-40071025 - 46 1.35e-06 CTCTGAGGGA CCATCTGCTCT GAAAAACAGA chr1:20039368-20039468 - 78 1.35e-06 TGCAGCAATC CCATCTGCTCT GTGAGTGACA chr4:12001730-12001830 - 29 2.37e-06 CCAGTCTTAG CCATCTGCCAC ATGGCAGTGG chr10:95033461-95033561 + 5 2.37e-06 TAAG CCATCTGCCCT TCTCAGAGAA chr15:17880125-17880225 - 79 2.37e-06 ATATCAAATA CCATCTGCCAC TCTTTCTGTG chr8:87116281-87116381 - 25 2.95e-06 AAAAATGGCT CCATCTGCTTG CTGCTGGGTC chr8:91643657-91643757 - 72 3.71e-06 CAGACTTTGC CCATCTGTTCC GTGAGGCTGT chr5:59715402-59715502 + 36 4.04e-06 cctgtgtaac ccatctgcctg gctatgtttc chr18:47857559-47857659 - 8 5.18e-06 GGTGCTCTTG CCATCTGTTGG AAATGCA chr1:18377366-18377466 - 18 5.18e-06 TTTGAGTTCT CCATCTGCCTT TTGTCAGTTT chr1:49899447-49899547 + 69 5.18e-06 atccaaaaca ccatctggtcc ttctacaaaa chr7:80776081-80776181 - 49 6.29e-06 TGCGTATGCG CCATCTGCTCA GTGGAGAGAC chr15:55200121-55200221 - 57 6.29e-06 TCTTTTATAG CCATCTGTTAC ATAACATCTG chr5:4979525-4979625 + 42 6.29e-06 CGCATCATGT CCATCTGCTCA GTCCCCTCCC chr8:79140931-79141031 - 43 6.29e-06 GCTGCAGATA CCATCTGCTGA TGCCTAGTTA chr9:29652203-29652303 - 34 6.29e-06 TGCTTTGTGG CCATCTGTTGT GACTCTGGAT chr12:82807166-82807266 - 7 6.29e-06 CTCTGTTTAA CCATCTGTTGT TAACTT chr19:20180756-20180856 - 21 6.29e-06 AACCCTCACT CCATCTGCTCA TCTTTAAACA chr1:106569650-106569750 - 60 7.54e-06 CAACTGCATT CCATCTGTCGG ACACCTAAAA chr3:61969773-61969873 - 54 7.54e-06 ACTGAGGATG CCATCTGTTTC CTGCCAGGAG chr8:38737080-38737180 - 65 7.54e-06 GAGATAGATT CCATCTGTTTC ATGAAGGCAA chr6:55950641-55950741 + 74 7.54e-06 TGTAATGCTG CCATCTGGTGG TTACTTTGAC chr11:110430965-11043106 + 66 7.54e-06 TGTTGCTCTG CCAGCTGCTCC TCCTTGGCTG chr16:95334163-95334263 - 52 9.77e-06 CATTTTTGGT CCATCTGGTCT ACCTAGACCA chr17:43979880-43979980 - 21 9.77e-06 GAAGATGCAG CCATCTGTCAC TGCATACAGA chr19:36774064-36774164 + 17 9.77e-06 TGCCAAGGCA CCATCTGGTCT GGCCATGAGT chr4:52336286-52336386 - 30 9.77e-06 TAGTCTCTCA CCATCTGTCCT CTCAGTGCTT chr17:8592595-8592695 + 54 1.16e-05 GCGTCTGCTG CCATCTGGCGG GAGAGGAAGA chr4:68690675-68690775 - 53 1.16e-05 TTGGAGATCT CCATCTGGTTC CTCGCCTTGG chr15:42429690-42429790 - 67 1.16e-05 CTCAGCAAAC CCAGCTGCTGG CAGACAGTCT chr2:117308929-117309029 - 69 1.47e-05 GGAGTACACA CCATCTGTCAG CACTCTGACC chr10:74855239-74855339 + 71 1.47e-05 CATTTAGCAA CCATCTGTTTT ATGTGATTTA chr17:67584463-67584563 + 48 1.47e-05 AGCCTACTGA CCAGCTGCTCT CACACCAAGA chr9:23442146-23442246 + 19 1.47e-05 ACAGGCAGCA CCATCTGCACG AGCTTTCCAG chr4:98600411-98600511 + 78 1.47e-05 tgactgctga gcatctgctcg cactggccat chr17:51645793-51645893 - 30 1.74e-05 ACTGTACTCA CCATCTGGTTG TGGGAGGTGT chr1:159386445-159386545 + 47 1.74e-05 CGGGCTGCAG CCATCTGGCTC CTGCTTCTCC chr12:70705215-70705315 + 79 1.74e-05 CACTTGCATA CCATCTGTCAT CCTGGCTTTT chr4:10923090-10923190 - 38 1.74e-05 TACTCATTCT GCATCTGCTGT AGTGGTCACG chr17:53336336-53336436 + 59 2.04e-05 TGAGACATTT CCATCTGTCTT CTCATCTGAG chr14:48246071-48246171 - 58 2.04e-05 AAGCCTGAAC ACATCTGCCCC TGGTATTTAT chr14:64591606-64591706 - 13 2.04e-05 TCCTTTCCCT CCCTCTGCTGC TGGGTCCTGC chr13:44086652-44086752 + 63 2.04e-05 CTCAGCAGTC CCATCTGGCAG TCAGATTCTA chr7:132005957-132006057 - 26 2.40e-05 ACCCCAGATC CCATATGCTGC TCTGTGTGCC chr7:122477771-122477871 - 62 2.40e-05 CTGCGCAACA GCATCTGCCCT CCAGGAAAAC chr16:76928901-76929001 - 67 2.40e-05 TGATTCTCAG ACATCTGCTGT CACAAAATAT chr4:16378332-16378432 - 3 2.40e-05 AACCTGTAAT GCATCTGCTAG AT chr2:75223665-75223765 + 24 2.40e-05 tcagagtctt gcatctgctag gcacacacta chr2:38893814-38893914 - 82 2.40e-05 CCATCAAG CCATCTGTTGA GGTTGATATG chr12:24872677-24872777 - 9 2.40e-05 TCCTCTGACT CCATATGCTGC AGCCTAGA chr15:32129032-32129132 + 73 2.68e-05 agtgaccaag acatctgcttc tgactgattg chr15:24407607-24407707 + 66 2.68e-05 CCTTCTGCTG CCCTCTGCTGG CAAGAACACT chr6:85236968-85237068 - 65 2.68e-05 GTCTGTCTAC ACATCTGCTTC CCCTGCCTGG chr17:47140924-47141024 - 47 2.68e-05 AACTTACTCC CCATCTGCATG CACCGCCTCT chrX:20819672-20819772 - 37 2.68e-05 ACCAACAACT CCCTCTGCTGG CTCTTAAAAA chr1:55838111-55838211 + 73 2.68e-05 CTCTACACTG CCCTCTGCTGG CATTTCTCTC chr5:74313504-74313604 - 52 2.68e-05 CCACCCAATG CCATCTGCATG GTACATAGCA chr2:29526272-29526372 - 71 2.68e-05 TCTGAAGGTG CCAGCTGCCAG CTGGCAGTCA chr11:20878557-20878657 - 35 2.68e-05 GGCTCTACCA GCATCTGCTAT ACACATGCTT chr5:129137358-129137458 + 76 3.12e-05 CATTCTACAG ACATCTGCTAG AACCTGCTTT chr19:53065943-53066043 + 6 3.49e-05 TTGAC ACATCTGCTAT TTTAAACCTC chr15:10134847-10134947 + 25 3.49e-05 TGTCTCATTC CCAGCTGGTCC AGAAAACCCG chr3:105517114-105517214 + 26 3.49e-05 AATGAGTTTT CCAGCTGCCTT GAGAACCTCA chr11:118793498-11879359 + 40 4.06e-05 GGCAATCCGA ACATCTGTTCC CGTTAGAAAA chr9:70232416-70232516 - 35 4.06e-05 AGGTGTAACT GCATCTGGTCC TTAGCAAGAG chr2:156673219-156673319 + 45 4.06e-05 CCATCCgctc ccatatgcttc ctgctattta chr3:153327798-153327898 + 20 4.06e-05 TGAGCCTTGC CCATCTGGACC TCACAAAGGC chr15:100910311-10091041 - 60 4.06e-05 TAATTCTCTC CCCTCTGCCAC CAAGCTGTGT chr3:133445527-133445627 + 39 4.06e-05 TAGACCAGTG CCATCTGTAGG TCTCCTCTCT chr6:37752953-37753053 - 34 4.06e-05 TTATCTTCAA CCATCTGTGCC ATGCCCTGAG chr1:90327193-90327293 - 34 4.58e-05 CCTGCAGTCT CCAGCTGGCCC CTTCGCTTTA chr13:93388421-93388521 - 69 4.58e-05 TCCTTCCTAC ACATCTGCCAT CTGGGCCTGC chr12:5173754-5173854 - 44 4.58e-05 TCCTGTGGCT CCCTCTGCCTC TGCCTTTTCT chr4:139258522-139258622 - 35 5.29e-05 CCCACACCTC CCAGCTGTCAC TCTGCTTCCA chr1:105947027-105947127 - 72 5.29e-05 GTTAACTCAG GCAGCTGCTGC AGTTCTGCTT chr2:72662339-72662439 + 79 5.29e-05 ATGAGGGATA CCATCTGGAGG AGAGAGATTT chr3:50306162-50306262 - 70 5.29e-05 TAAGGTGCTT CCATCTGGGGC TAGAACAGAA chr4:40110685-40110785 - 67 5.29e-05 GCCTGTTTTT ACATCTGGTGC TGGCTCTTTA chr3:117796951-117797051 - 57 5.29e-05 TAGAGTTCGC ACATCTGCCTT TGAATTTACT chr8:124349604-124349704 + 64 5.29e-05 TTCTATAATT CCAGCTGCCCA CACTCCCCAG chr5:118079260-118079360 - 68 5.29e-05 AGTGGAGGTG GCAGCTGCTGC TGGTGTGTGA chr1:188667550-188667650 + 57 5.29e-05 TGCGAAGACA CCATCTGTGGG ACTGAACAGA chr17:5262749-5262849 - 73 6.05e-05 TTCCTTACAT CCCTCTGCCTG GGAGTCACAT chr3:105488387-105488487 + 54 6.05e-05 GGTGTTTTGG GCATCTGTCCT CCCTGGCACT chr15:72503564-72503664 + 32 6.05e-05 TACAGTTGCT GCATCTGGTCT GTGAGGGAAG chr15:78026450-78026550 + 49 6.05e-05 ggggaagtag acatctgttct tcccaggaat chr2:149768460-149768560 + 77 6.05e-05 TGCTCAGAAA GCATCTGCACC CCAGACAGCA chr9:95452898-95452998 + 64 6.05e-05 ACTCTACTAA CCCTCTGCCAT GCAGCAGGAG chr13:44681075-44681175 - 45 6.82e-05 CAGTTACCAG ACATCTGTTTC CAATTCAGGG chr17:65374475-65374575 + 23 6.82e-05 tcctgtgagt gcatctgtctc tccctccatg chr16:40290037-40290137 - 16 6.82e-05 TTTAGAGAAA GCAGCTGCTGG TTGGCATGGG chr4:70032432-70032532 - 60 7.82e-05 TTATACATTT CCATCTGTGAG TATTTTTCTG chr16:50009538-50009638 - 45 7.82e-05 CAGGAAGCAG CCATCTGTGAG AGCTGGGATT chr1:131482164-131482264 + 35 7.82e-05 GAGGATGCTA CCAGCTGTCAT GAGTTTCCCT chr2:18952349-18952449 - 3 7.82e-05 TGAAGACAAG CCAGCTGCCAA CT chr3:124728248-124728348 - 15 7.82e-05 ACAGATTGTC GCATCTGCTTA TGAACATGTC chr10:94777470-94777570 - 63 7.82e-05 ACACGACAAG CCATCTGCATA CTTTTGTGCT chr13:36492349-36492449 + 29 7.82e-05 GGAGGCTGCA GCAGCTGCTAC TGTAGAGGGG chr3:137401448-137401548 + 74 7.82e-05 TCACATTTAG CCATATGCCTT AGCATTCATT chr10:9113641-9113741 - 69 7.82e-05 TATGGACATC CCATATGTCCC CGGTTCTCAC chr8:72918420-72918520 + 58 7.82e-05 tggctcacaa acatctgtcac tccagttcca chr15:94160711-94160811 - 43 7.82e-05 TAATTTCTTA ACATCTGTTAG AGGCTATAAA chr15:64021193-64021293 - 31 7.82e-05 ACCATCTCTT CCATATGGTGC TTAGCTTAAG chr13:76878950-76879050 - 60 7.82e-05 GGAGGAAACT CCCTCTGTTCT ATACACAGTG chr19:20133265-20133365 - 56 8.74e-05 TCTTCTCACT CCAGCTGCCTA AAATCCTTTT chr16:35272340-35272440 + 77 8.74e-05 TTTTCTCACT CCCTCTGGTGG ATATATTTTT chr10:114041938-11404203 - 4 8.74e-05 TTACATGAGT CCATATGTTGT TTT chr4:40352347-40352447 + 55 8.74e-05 tcaggcttgg gcatctggtat ctttacttct chr2:78387960-78388060 + 39 8.74e-05 AAAAGTCAGC CCATCTGTGAT GTTTCCTGCC chr10:6152927-6153027 + 24 9.73e-05 ATCATGTCTA CCCTCTGGTCT ATGGATTTCT chr13:60305548-60305648 + 49 9.73e-05 TCTGGGAAGC CCATCtgtgtt ggtttgaatg chr13:5398967-5399067 - 8 1.08e-04 CCTAAGGAAG ACATCTGTCAT GTGTCAG chr18:59210615-59210715 + 17 1.08e-04 AACTTACATA CCATATGGTGT AGGCTATGCC chr3:13866273-13866373 - 19 1.18e-04 GCAGAGATTC CCCTCTGGCCT TCTGGCACTC chr2:63052864-63052964 - 9 1.18e-04 GTGTCTGTGT CCAGCTGTCGA CTCATGAG chr5:50202619-50202719 - 31 1.18e-04 TATTCACAGT GCAGCTGCCAG GGGCTCCCTT chrX:89342886-89342986 + 81 1.18e-04 ACTTCATGTA CCATATGTTAT CCTAGAAAA chr7:75254887-75254987 + 62 1.18e-04 GTTCTTTCTA CCAGCTGTCCA CACCAATGCA chr6:6515930-6516030 - 22 1.30e-04 CAAGTGCACT CCATCTGTGGA TACTTCCTGA chr3:127446088-127446188 - 60 1.30e-04 TCAGAACACA CCCTCTGCAGT GGAGTCCTTA chr2:173427930-173428030 + 80 1.30e-04 gtgagcactg ccatctggaca cagtgtgaat chr13:56790644-56790744 - 59 1.30e-04 AATGAGCCAC ACAGCTGCTTG TGCACACTAG chr17:84100635-84100735 + 53 1.30e-04 GAGACCCACA CCCTCTGGCTC TCGCCACAGT chr12:32138320-32138420 - 50 1.41e-04 AAGCTGTACC CCAGCTGTGGC CTGCCCATGC chr15:51815013-51815113 - 12 1.41e-04 TTTTATGAAG CCATCTGTAAA ATGTTATTCT chr2:117888311-117888411 - 16 1.41e-04 GGGCCCAGAA GCATCTGCGTG GTCTTGGTTC chr16:49164301-49164401 + 69 1.55e-04 CTCCTCTTGT CCAGCTGTAAC TTCAGCCTCA chr3:17853079-17853179 - 54 1.55e-04 AACATGAGAC CCAGATGCTAG CCAATTTAGT chr6:84383062-84383162 + 46 1.55e-04 ggagcttgag acatctggtca cattgtaccc chr5:71127674-71127774 + 28 1.55e-04 CAAACAGGCT GCAGCTGCTGA GTGACTCAGC chr12:94932441-94932541 - 74 1.55e-04 TTTTAACAGG CCATATGCATC GTTGGTCTGT chrX:54257537-54257637 - 66 1.67e-04 ATAACACGGT CCATATGTTCA TCCCCTTTAC chr4:69753025-69753125 + 34 1.67e-04 TAAGAAATAA ACAGCTGTTGG AGGCTCTCTG chr1:81098890-81098990 - 50 1.82e-04 TGTACTCCTG ACAGCTGCTCA TTGGGAAGAG chr2:149493536-149493636 - 34 1.82e-04 AGCCTGCTAG GCCTCTGTTCC AAACTGTGGG chr16:6907183-6907283 - 82 1.82e-04 TTCTAGAC ACAGCTGCTCA AGCCAAGGAC chr1:22748555-22748655 - 4 1.98e-04 GTTGACAAAA CCATATGCATT TGA chr13:6129525-6129625 + 22 1.98e-04 tgacgccatt gcatatgccag caagattttg chr15:4086885-4086985 + 7 1.98e-04 AGATGT CCATATGCATT TTTGTTCGTG chr2:59424657-59424757 + 9 1.98e-04 AAACCCCT GCATCTGGAGT GAGCCTTGAG chr11:24749927-24750027 + 5 1.98e-04 CTTG CCATATGTCCA CAACCAAAAA chr12:63382341-63382441 - 35 2.14e-04 GGCAATGATG ACATATGCTTG TAATCTCAGC chr13:108899836-10889993 + 24 2.14e-04 AATATTCTTG ACAGCTGTTAG CTTTGCTGTA chr18:39687547-39687647 - 78 2.32e-04 TCTCAGCTGA CCCTCTGTACT CTATCCATAG chr8:115302422-115302522 + 78 2.51e-04 TATTTCCCTG CCGTCTGCAGC CATGGCTTAC chr13:42615808-42615908 + 47 2.51e-04 GCTCGGCACA GCATCTGTGTG CATGCTAAAT chr16:73223697-73223797 + 35 2.51e-04 TCTTTGGATT CCATATGGTAA GAAAACAGCG chr2:5165493-5165593 + 20 2.71e-04 TTAAGGATGG ACATCTGGGAC AAGGAGGGTG chr4:50507443-50507543 + 24 2.92e-04 aaagctgtga acatctgtgat tctattttgt chr2:28412907-28413007 - 55 2.92e-04 GGAGAAGTCT GCGTCTGCCGC CCACATGGGG chr8:102694601-102694701 + 32 2.92e-04 TGCTCCAGAT GCATATGCCGA TGCCTCAGCA chr3:154294046-154294146 - 20 2.92e-04 CCGATCTAGC ACATATGTTAC ACTGAAGACT chr18:43538933-43539033 - 9 3.14e-04 AACTCTAGGT CCCGCTGCACT GAAGGAAC chr15:10922987-10923087 - 67 3.35e-04 ATACAGAATT CCATATGCATA AGAAAATGGG chr12:80014276-80014376 + 22 3.35e-04 CCCAGCAAGC ACCGCTGCCGC ACCGGCAGCT chr13:91719426-91719526 + 12 3.78e-04 aagcatctaa acatatggcgt gtgggccctc chr6:99353528-99353628 - 4 3.99e-04 AATAGCTGTC ACATATGTCTG TAC chr12:17051053-17051153 - 72 4.19e-04 ATTCTCAGCC CCGTATGCTAC TGGAGATCTT chr14:66238894-66238994 - 48 4.62e-04 CTCCAGCAGC ACGTCTGCCTG CTTTTACAGT chr12:41394189-41394289 + 31 5.11e-04 AGCTCTGAAT GCATATGTAGT GATTTCCCTT chr1:40945607-40945707 - 16 7.62e-04 ATCCCAGATT CCGTATGGCAT GTCTGAATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTGYYNB MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:103806056-10380615 2.9e-07 21_[-2]_68 chr1:28214225-28214325 2.9e-07 18_[+2]_71 chr9:14242227-14242327 2.9e-07 61_[+2]_28 chr8:33220418-33220518 7.9e-07 9_[-2]_80 chr5:71842203-71842303 1.4e-06 79_[-2]_10 chr6:40070925-40071025 1.4e-06 45_[-2]_44 chr1:20039368-20039468 1.4e-06 77_[-2]_12 chr4:12001730-12001830 2.4e-06 28_[-2]_61 chr10:95033461-95033561 2.4e-06 4_[+2]_85 chr15:17880125-17880225 2.4e-06 78_[-2]_11 chr8:87116281-87116381 2.9e-06 24_[-2]_65 chr8:91643657-91643757 3.7e-06 71_[-2]_18 chr5:59715402-59715502 4e-06 35_[+2]_54 chr18:47857559-47857659 5.2e-06 7_[-2]_82 chr1:18377366-18377466 5.2e-06 17_[-2]_72 chr1:49899447-49899547 5.2e-06 68_[+2]_21 chr7:80776081-80776181 6.3e-06 48_[-2]_41 chr15:55200121-55200221 6.3e-06 56_[-2]_33 chr5:4979525-4979625 6.3e-06 41_[+2]_48 chr8:79140931-79141031 6.3e-06 42_[-2]_47 chr9:29652203-29652303 6.3e-06 33_[-2]_56 chr12:82807166-82807266 6.3e-06 6_[-2]_83 chr19:20180756-20180856 6.3e-06 20_[-2]_69 chr1:106569650-106569750 7.5e-06 59_[-2]_30 chr3:61969773-61969873 7.5e-06 53_[-2]_36 chr8:38737080-38737180 7.5e-06 64_[-2]_25 chr6:55950641-55950741 7.5e-06 73_[+2]_16 chr11:110430965-11043106 7.5e-06 65_[+2]_24 chr16:95334163-95334263 9.8e-06 51_[-2]_38 chr17:43979880-43979980 9.8e-06 20_[-2]_69 chr19:36774064-36774164 9.8e-06 16_[+2]_73 chr4:52336286-52336386 9.8e-06 29_[-2]_60 chr17:8592595-8592695 1.2e-05 53_[+2]_36 chr4:68690675-68690775 1.2e-05 52_[-2]_37 chr15:42429690-42429790 1.2e-05 66_[-2]_23 chr2:117308929-117309029 1.5e-05 68_[-2]_21 chr10:74855239-74855339 1.5e-05 70_[+2]_19 chr17:67584463-67584563 1.5e-05 47_[+2]_42 chr9:23442146-23442246 1.5e-05 18_[+2]_71 chr4:98600411-98600511 1.5e-05 77_[+2]_12 chr17:51645793-51645893 1.7e-05 29_[-2]_60 chr1:159386445-159386545 1.7e-05 46_[+2]_43 chr12:70705215-70705315 1.7e-05 78_[+2]_11 chr4:10923090-10923190 1.7e-05 37_[-2]_52 chr17:53336336-53336436 2e-05 58_[+2]_31 chr14:48246071-48246171 2e-05 57_[-2]_32 chr14:64591606-64591706 2e-05 12_[-2]_77 chr13:44086652-44086752 2e-05 62_[+2]_27 chr7:132005957-132006057 2.4e-05 25_[-2]_64 chr7:122477771-122477871 2.4e-05 61_[-2]_28 chr16:76928901-76929001 2.4e-05 66_[-2]_23 chr4:16378332-16378432 2.4e-05 2_[-2]_87 chr2:75223665-75223765 2.4e-05 23_[+2]_66 chr2:38893814-38893914 2.4e-05 81_[-2]_8 chr12:24872677-24872777 2.4e-05 8_[-2]_81 chr15:32129032-32129132 2.7e-05 72_[+2]_17 chr15:24407607-24407707 2.7e-05 65_[+2]_24 chr6:85236968-85237068 2.7e-05 64_[-2]_25 chr17:47140924-47141024 2.7e-05 46_[-2]_43 chrX:20819672-20819772 2.7e-05 36_[-2]_53 chr1:55838111-55838211 2.7e-05 72_[+2]_17 chr5:74313504-74313604 2.7e-05 51_[-2]_38 chr2:29526272-29526372 2.7e-05 70_[-2]_19 chr11:20878557-20878657 2.7e-05 34_[-2]_55 chr5:129137358-129137458 3.1e-05 75_[+2]_14 chr19:53065943-53066043 3.5e-05 5_[+2]_84 chr15:10134847-10134947 3.5e-05 24_[+2]_65 chr3:105517114-105517214 3.5e-05 25_[+2]_64 chr11:118793498-11879359 4.1e-05 39_[+2]_50 chr9:70232416-70232516 4.1e-05 34_[-2]_55 chr2:156673219-156673319 4.1e-05 44_[+2]_45 chr3:153327798-153327898 4.1e-05 19_[+2]_70 chr15:100910311-10091041 4.1e-05 59_[-2]_30 chr3:133445527-133445627 4.1e-05 38_[+2]_51 chr6:37752953-37753053 4.1e-05 33_[-2]_56 chr1:90327193-90327293 4.6e-05 33_[-2]_56 chr13:93388421-93388521 4.6e-05 68_[-2]_21 chr12:5173754-5173854 4.6e-05 43_[-2]_46 chr4:139258522-139258622 5.3e-05 34_[-2]_55 chr1:105947027-105947127 5.3e-05 71_[-2]_18 chr2:72662339-72662439 5.3e-05 78_[+2]_11 chr3:50306162-50306262 5.3e-05 69_[-2]_20 chr4:40110685-40110785 5.3e-05 66_[-2]_23 chr3:117796951-117797051 5.3e-05 56_[-2]_33 chr8:124349604-124349704 5.3e-05 63_[+2]_26 chr5:118079260-118079360 5.3e-05 67_[-2]_22 chr1:188667550-188667650 5.3e-05 56_[+2]_33 chr17:5262749-5262849 6e-05 72_[-2]_17 chr3:105488387-105488487 6e-05 53_[+2]_36 chr15:72503564-72503664 6e-05 31_[+2]_58 chr15:78026450-78026550 6e-05 48_[+2]_41 chr2:149768460-149768560 6e-05 76_[+2]_13 chr9:95452898-95452998 6e-05 63_[+2]_26 chr13:44681075-44681175 6.8e-05 44_[-2]_45 chr17:65374475-65374575 6.8e-05 22_[+2]_67 chr16:40290037-40290137 6.8e-05 15_[-2]_74 chr4:70032432-70032532 7.8e-05 59_[-2]_30 chr16:50009538-50009638 7.8e-05 44_[-2]_45 chr1:131482164-131482264 7.8e-05 34_[+2]_55 chr2:18952349-18952449 7.8e-05 2_[-2]_87 chr3:124728248-124728348 7.8e-05 14_[-2]_75 chr10:94777470-94777570 7.8e-05 62_[-2]_27 chr13:36492349-36492449 7.8e-05 28_[+2]_61 chr3:137401448-137401548 7.8e-05 73_[+2]_16 chr10:9113641-9113741 7.8e-05 68_[-2]_21 chr8:72918420-72918520 7.8e-05 57_[+2]_32 chr15:94160711-94160811 7.8e-05 42_[-2]_47 chr15:64021193-64021293 7.8e-05 30_[-2]_59 chr13:76878950-76879050 7.8e-05 59_[-2]_30 chr19:20133265-20133365 8.7e-05 55_[-2]_34 chr16:35272340-35272440 8.7e-05 76_[+2]_13 chr10:114041938-11404203 8.7e-05 3_[-2]_86 chr4:40352347-40352447 8.7e-05 54_[+2]_35 chr2:78387960-78388060 8.7e-05 38_[+2]_51 chr10:6152927-6153027 9.7e-05 23_[+2]_66 chr13:60305548-60305648 9.7e-05 48_[+2]_41 chr13:5398967-5399067 0.00011 7_[-2]_82 chr18:59210615-59210715 0.00011 16_[+2]_73 chr3:13866273-13866373 0.00012 18_[-2]_71 chr2:63052864-63052964 0.00012 8_[-2]_81 chr5:50202619-50202719 0.00012 30_[-2]_59 chrX:89342886-89342986 0.00012 80_[+2]_9 chr7:75254887-75254987 0.00012 61_[+2]_28 chr6:6515930-6516030 0.00013 21_[-2]_68 chr3:127446088-127446188 0.00013 59_[-2]_30 chr2:173427930-173428030 0.00013 79_[+2]_10 chr13:56790644-56790744 0.00013 58_[-2]_31 chr17:84100635-84100735 0.00013 52_[+2]_37 chr12:32138320-32138420 0.00014 49_[-2]_40 chr15:51815013-51815113 0.00014 11_[-2]_78 chr2:117888311-117888411 0.00014 15_[-2]_74 chr16:49164301-49164401 0.00015 68_[+2]_21 chr3:17853079-17853179 0.00015 53_[-2]_36 chr6:84383062-84383162 0.00015 45_[+2]_44 chr5:71127674-71127774 0.00015 27_[+2]_62 chr12:94932441-94932541 0.00015 73_[-2]_16 chrX:54257537-54257637 0.00017 65_[-2]_24 chr4:69753025-69753125 0.00017 33_[+2]_56 chr1:81098890-81098990 0.00018 49_[-2]_40 chr2:149493536-149493636 0.00018 33_[-2]_56 chr16:6907183-6907283 0.00018 81_[-2]_8 chr1:22748555-22748655 0.0002 3_[-2]_86 chr13:6129525-6129625 0.0002 21_[+2]_68 chr15:4086885-4086985 0.0002 6_[+2]_83 chr2:59424657-59424757 0.0002 8_[+2]_81 chr11:24749927-24750027 0.0002 4_[+2]_85 chr12:63382341-63382441 0.00021 34_[-2]_55 chr13:108899836-10889993 0.00021 23_[+2]_66 chr18:39687547-39687647 0.00023 77_[-2]_12 chr8:115302422-115302522 0.00025 77_[+2]_12 chr13:42615808-42615908 0.00025 46_[+2]_43 chr16:73223697-73223797 0.00025 34_[+2]_55 chr2:5165493-5165593 0.00027 19_[+2]_70 chr4:50507443-50507543 0.00029 23_[+2]_66 chr2:28412907-28413007 0.00029 54_[-2]_35 chr8:102694601-102694701 0.00029 31_[+2]_58 chr3:154294046-154294146 0.00029 19_[-2]_70 chr18:43538933-43539033 0.00031 8_[-2]_81 chr15:10922987-10923087 0.00034 66_[-2]_23 chr12:80014276-80014376 0.00034 21_[+2]_68 chr13:91719426-91719526 0.00038 11_[+2]_78 chr6:99353528-99353628 0.0004 3_[-2]_86 chr12:17051053-17051153 0.00042 71_[-2]_18 chr14:66238894-66238994 0.00046 47_[-2]_42 chr12:41394189-41394289 0.00051 30_[+2]_59 chr1:40945607-40945707 0.00076 15_[-2]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTGYYNB MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCATCTGYYNB width=11 seqs=166 chr13:103806056-10380615 ( 22) CCATCTGCTCC 1 chr1:28214225-28214325 ( 19) CCATCTGCTGC 1 chr9:14242227-14242327 ( 62) CCATCTGCTCC 1 chr8:33220418-33220518 ( 10) CCATCTGCTGG 1 chr5:71842203-71842303 ( 80) CCATCTGCTCT 1 chr6:40070925-40071025 ( 46) CCATCTGCTCT 1 chr1:20039368-20039468 ( 78) CCATCTGCTCT 1 chr4:12001730-12001830 ( 29) CCATCTGCCAC 1 chr10:95033461-95033561 ( 5) CCATCTGCCCT 1 chr15:17880125-17880225 ( 79) CCATCTGCCAC 1 chr8:87116281-87116381 ( 25) CCATCTGCTTG 1 chr8:91643657-91643757 ( 72) CCATCTGTTCC 1 chr5:59715402-59715502 ( 36) CCATCTGCCTG 1 chr18:47857559-47857659 ( 8) CCATCTGTTGG 1 chr1:18377366-18377466 ( 18) CCATCTGCCTT 1 chr1:49899447-49899547 ( 69) CCATCTGGTCC 1 chr7:80776081-80776181 ( 49) CCATCTGCTCA 1 chr15:55200121-55200221 ( 57) CCATCTGTTAC 1 chr5:4979525-4979625 ( 42) CCATCTGCTCA 1 chr8:79140931-79141031 ( 43) CCATCTGCTGA 1 chr9:29652203-29652303 ( 34) CCATCTGTTGT 1 chr12:82807166-82807266 ( 7) CCATCTGTTGT 1 chr19:20180756-20180856 ( 21) CCATCTGCTCA 1 chr1:106569650-106569750 ( 60) CCATCTGTCGG 1 chr3:61969773-61969873 ( 54) CCATCTGTTTC 1 chr8:38737080-38737180 ( 65) CCATCTGTTTC 1 chr6:55950641-55950741 ( 74) CCATCTGGTGG 1 chr11:110430965-11043106 ( 66) CCAGCTGCTCC 1 chr16:95334163-95334263 ( 52) CCATCTGGTCT 1 chr17:43979880-43979980 ( 21) CCATCTGTCAC 1 chr19:36774064-36774164 ( 17) CCATCTGGTCT 1 chr4:52336286-52336386 ( 30) CCATCTGTCCT 1 chr17:8592595-8592695 ( 54) CCATCTGGCGG 1 chr4:68690675-68690775 ( 53) CCATCTGGTTC 1 chr15:42429690-42429790 ( 67) CCAGCTGCTGG 1 chr2:117308929-117309029 ( 69) CCATCTGTCAG 1 chr10:74855239-74855339 ( 71) CCATCTGTTTT 1 chr17:67584463-67584563 ( 48) CCAGCTGCTCT 1 chr9:23442146-23442246 ( 19) CCATCTGCACG 1 chr4:98600411-98600511 ( 78) GCATCTGCTCG 1 chr17:51645793-51645893 ( 30) CCATCTGGTTG 1 chr1:159386445-159386545 ( 47) CCATCTGGCTC 1 chr12:70705215-70705315 ( 79) CCATCTGTCAT 1 chr4:10923090-10923190 ( 38) GCATCTGCTGT 1 chr17:53336336-53336436 ( 59) CCATCTGTCTT 1 chr14:48246071-48246171 ( 58) ACATCTGCCCC 1 chr14:64591606-64591706 ( 13) CCCTCTGCTGC 1 chr13:44086652-44086752 ( 63) CCATCTGGCAG 1 chr7:132005957-132006057 ( 26) CCATATGCTGC 1 chr7:122477771-122477871 ( 62) GCATCTGCCCT 1 chr16:76928901-76929001 ( 67) ACATCTGCTGT 1 chr4:16378332-16378432 ( 3) GCATCTGCTAG 1 chr2:75223665-75223765 ( 24) GCATCTGCTAG 1 chr2:38893814-38893914 ( 82) CCATCTGTTGA 1 chr12:24872677-24872777 ( 9) CCATATGCTGC 1 chr15:32129032-32129132 ( 73) ACATCTGCTTC 1 chr15:24407607-24407707 ( 66) CCCTCTGCTGG 1 chr6:85236968-85237068 ( 65) ACATCTGCTTC 1 chr17:47140924-47141024 ( 47) CCATCTGCATG 1 chrX:20819672-20819772 ( 37) CCCTCTGCTGG 1 chr1:55838111-55838211 ( 73) CCCTCTGCTGG 1 chr5:74313504-74313604 ( 52) CCATCTGCATG 1 chr2:29526272-29526372 ( 71) CCAGCTGCCAG 1 chr11:20878557-20878657 ( 35) GCATCTGCTAT 1 chr5:129137358-129137458 ( 76) ACATCTGCTAG 1 chr19:53065943-53066043 ( 6) ACATCTGCTAT 1 chr15:10134847-10134947 ( 25) CCAGCTGGTCC 1 chr3:105517114-105517214 ( 26) CCAGCTGCCTT 1 chr11:118793498-11879359 ( 40) ACATCTGTTCC 1 chr9:70232416-70232516 ( 35) GCATCTGGTCC 1 chr2:156673219-156673319 ( 45) CCATATGCTTC 1 chr3:153327798-153327898 ( 20) CCATCTGGACC 1 chr15:100910311-10091041 ( 60) CCCTCTGCCAC 1 chr3:133445527-133445627 ( 39) CCATCTGTAGG 1 chr6:37752953-37753053 ( 34) CCATCTGTGCC 1 chr1:90327193-90327293 ( 34) CCAGCTGGCCC 1 chr13:93388421-93388521 ( 69) ACATCTGCCAT 1 chr12:5173754-5173854 ( 44) CCCTCTGCCTC 1 chr4:139258522-139258622 ( 35) CCAGCTGTCAC 1 chr1:105947027-105947127 ( 72) GCAGCTGCTGC 1 chr2:72662339-72662439 ( 79) CCATCTGGAGG 1 chr3:50306162-50306262 ( 70) CCATCTGGGGC 1 chr4:40110685-40110785 ( 67) ACATCTGGTGC 1 chr3:117796951-117797051 ( 57) ACATCTGCCTT 1 chr8:124349604-124349704 ( 64) CCAGCTGCCCA 1 chr5:118079260-118079360 ( 68) GCAGCTGCTGC 1 chr1:188667550-188667650 ( 57) CCATCTGTGGG 1 chr17:5262749-5262849 ( 73) CCCTCTGCCTG 1 chr3:105488387-105488487 ( 54) GCATCTGTCCT 1 chr15:72503564-72503664 ( 32) GCATCTGGTCT 1 chr15:78026450-78026550 ( 49) ACATCTGTTCT 1 chr2:149768460-149768560 ( 77) GCATCTGCACC 1 chr9:95452898-95452998 ( 64) CCCTCTGCCAT 1 chr13:44681075-44681175 ( 45) ACATCTGTTTC 1 chr17:65374475-65374575 ( 23) GCATCTGTCTC 1 chr16:40290037-40290137 ( 16) GCAGCTGCTGG 1 chr4:70032432-70032532 ( 60) CCATCTGTGAG 1 chr16:50009538-50009638 ( 45) CCATCTGTGAG 1 chr1:131482164-131482264 ( 35) CCAGCTGTCAT 1 chr2:18952349-18952449 ( 3) CCAGCTGCCAA 1 chr3:124728248-124728348 ( 15) GCATCTGCTTA 1 chr10:94777470-94777570 ( 63) CCATCTGCATA 1 chr13:36492349-36492449 ( 29) GCAGCTGCTAC 1 chr3:137401448-137401548 ( 74) CCATATGCCTT 1 chr10:9113641-9113741 ( 69) CCATATGTCCC 1 chr8:72918420-72918520 ( 58) ACATCTGTCAC 1 chr15:94160711-94160811 ( 43) ACATCTGTTAG 1 chr15:64021193-64021293 ( 31) CCATATGGTGC 1 chr13:76878950-76879050 ( 60) CCCTCTGTTCT 1 chr19:20133265-20133365 ( 56) CCAGCTGCCTA 1 chr16:35272340-35272440 ( 77) CCCTCTGGTGG 1 chr10:114041938-11404203 ( 4) CCATATGTTGT 1 chr4:40352347-40352447 ( 55) GCATCTGGTAT 1 chr2:78387960-78388060 ( 39) CCATCTGTGAT 1 chr10:6152927-6153027 ( 24) CCCTCTGGTCT 1 chr13:60305548-60305648 ( 49) CCATCTGTGTT 1 chr13:5398967-5399067 ( 8) ACATCTGTCAT 1 chr18:59210615-59210715 ( 17) CCATATGGTGT 1 chr3:13866273-13866373 ( 19) CCCTCTGGCCT 1 chr2:63052864-63052964 ( 9) CCAGCTGTCGA 1 chr5:50202619-50202719 ( 31) GCAGCTGCCAG 1 chrX:89342886-89342986 ( 81) CCATATGTTAT 1 chr7:75254887-75254987 ( 62) CCAGCTGTCCA 1 chr6:6515930-6516030 ( 22) CCATCTGTGGA 1 chr3:127446088-127446188 ( 60) CCCTCTGCAGT 1 chr2:173427930-173428030 ( 80) CCATCTGGACA 1 chr13:56790644-56790744 ( 59) ACAGCTGCTTG 1 chr17:84100635-84100735 ( 53) CCCTCTGGCTC 1 chr12:32138320-32138420 ( 50) CCAGCTGTGGC 1 chr15:51815013-51815113 ( 12) CCATCTGTAAA 1 chr2:117888311-117888411 ( 16) GCATCTGCGTG 1 chr16:49164301-49164401 ( 69) CCAGCTGTAAC 1 chr3:17853079-17853179 ( 54) CCAGATGCTAG 1 chr6:84383062-84383162 ( 46) ACATCTGGTCA 1 chr5:71127674-71127774 ( 28) GCAGCTGCTGA 1 chr12:94932441-94932541 ( 74) CCATATGCATC 1 chrX:54257537-54257637 ( 66) CCATATGTTCA 1 chr4:69753025-69753125 ( 34) ACAGCTGTTGG 1 chr1:81098890-81098990 ( 50) ACAGCTGCTCA 1 chr2:149493536-149493636 ( 34) GCCTCTGTTCC 1 chr16:6907183-6907283 ( 82) ACAGCTGCTCA 1 chr1:22748555-22748655 ( 4) CCATATGCATT 1 chr13:6129525-6129625 ( 22) GCATATGCCAG 1 chr15:4086885-4086985 ( 7) CCATATGCATT 1 chr2:59424657-59424757 ( 9) GCATCTGGAGT 1 chr11:24749927-24750027 ( 5) CCATATGTCCA 1 chr12:63382341-63382441 ( 35) ACATATGCTTG 1 chr13:108899836-10889993 ( 24) ACAGCTGTTAG 1 chr18:39687547-39687647 ( 78) CCCTCTGTACT 1 chr8:115302422-115302522 ( 78) CCGTCTGCAGC 1 chr13:42615808-42615908 ( 47) GCATCTGTGTG 1 chr16:73223697-73223797 ( 35) CCATATGGTAA 1 chr2:5165493-5165593 ( 20) ACATCTGGGAC 1 chr4:50507443-50507543 ( 24) ACATCTGTGAT 1 chr2:28412907-28413007 ( 55) GCGTCTGCCGC 1 chr8:102694601-102694701 ( 32) GCATATGCCGA 1 chr3:154294046-154294146 ( 20) ACATATGTTAC 1 chr18:43538933-43539033 ( 9) CCCGCTGCACT 1 chr15:10922987-10923087 ( 67) CCATATGCATA 1 chr12:80014276-80014376 ( 22) ACCGCTGCCGC 1 chr13:91719426-91719526 ( 12) ACATATGGCGT 1 chr6:99353528-99353628 ( 4) ACATATGTCTG 1 chr12:17051053-17051153 ( 72) CCGTATGCTAC 1 chr14:66238894-66238994 ( 48) ACGTCTGCCTG 1 chr12:41394189-41394289 ( 31) GCATATGTAGT 1 chr1:40945607-40945707 ( 16) CCGTATGGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTGYYNB MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 9.84136 E= 3.7e-041 -70 162 -41 -1402 -1402 221 -1402 -1402 160 -100 -284 -1402 -1402 -1402 -26 153 -86 196 -1402 -1402 -1402 -1402 -1402 182 -1402 -1402 221 -1402 -1402 119 -21 17 -117 48 -146 80 -24 33 29 -35 -97 53 23 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTGYYNB MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 166 E= 3.7e-041 0.174699 0.662651 0.162651 0.000000 0.000000 1.000000 0.000000 0.000000 0.861446 0.108434 0.030120 0.000000 0.000000 0.000000 0.180723 0.819277 0.156627 0.843373 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.493976 0.186747 0.319277 0.126506 0.301205 0.078313 0.493976 0.240964 0.271084 0.265060 0.222892 0.144578 0.313253 0.253012 0.289157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATCTGYYNB MEME-2 regular expression -------------------------------------------------------------------------------- CCATCTG[CT][TC][CGAT][CTG] -------------------------------------------------------------------------------- Time 931.27 secs. ******************************************************************************** ******************************************************************************** MOTIF VAKWGRRARAGWGRRARRAAARGAGARAAA MEME-3 width = 30 sites = 23 llr = 392 E-value = 3.8e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif VAKWGRRARAGWGRRARRAAARGAGARAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 38:526474735163837676639273959 pos.-specific C 3:1:::1:11::2:1:::211:::1:1:2: probability G 4:6:8352517274526322347:635121 matrix T :134:::1:1:3:::::::::::11:::1: bits 2.2 2.0 1.8 1.5 * Relative 1.3 * * * Entropy 1.1 * * * * * * * * * * (24.6 bits) 0.9 * ** * * *** * *** * * * 0.7 ******** * ******** *** * * * 0.4 **************************** * 0.2 ****************************** 0.0 ------------------------------ Multilevel GAGAGAGAGAGAGAGAGAAAAAGAGAGAAA consensus C TT GAGA AT GAGAGCGGGA AGA G sequence A G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAKWGRRARAGWGRRARRAAARGAGARAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr13:29179768-29179868 - 49 8.05e-15 TCTTCAGAGA GAGAGAGAGAGAGAGAGACAGAGAGAGAGA GAATGAGAAT chr18:14463272-14463372 - 62 1.47e-12 AGCTGTCTT GAGTAGGAGAGAGAGAGAGAGAGAGAGAGA AAGCAGTCTG chr5:25830857-25830957 - 66 1.47e-12 GGAGG GAGAGGGAGAGAGGGAGAGAGGGTGAGAGA GAGGGAGAGG chr18:59210615-59210715 + 52 1.75e-12 AGTAAGCATT CAGTGAAAGGGGGAAAGACAAGGAGAGAAA GCATCTGGGG chr16:35272340-35272440 - 5 5.63e-11 CCAACTAGGG AAGAGAGGAGGAGAGAGGAGAAGAGACAAA CCGC chr4:76038425-76038525 - 31 1.39e-10 TGTGTGAGAG AAGAGAGAGGAAGGGAGACAGGGAGGGAAG GAGGGAGGAA chr2:102579271-102579371 + 12 1.24e-09 CAATTTTAGA AATAGAAAGTGGGGGAAAAAAAGAAAAACA AGAAGACCAA chr16:41276437-41276537 - 14 2.80e-09 AATATAACAA GTTTGAGAAAGACAAAAGAAAAGAGAGTAA GGCTCAATTT chr2:6464039-6464139 + 70 3.75e-09 GGCATGAGGC CAGAGAGTGaaaaaaaaaaaaaaaaaaaaa a chr3:116222391-116222491 - 1 4.13e-09 AGGCCATTGT GATTGGAACAATGACAGGAGCAGAGAGAGA chr10:123418232-12341833 - 15 2.04e-08 AAATCACCTC AAGTGGGTGAGGCGAGAAAAAAAAGAAATA AAAAAGATGT chr5:118079260-118079360 + 24 2.40e-08 GGCGGGCCTT CAGTGGCAGAGGGAGGGAGAAGCACAAAAG AGGCTCACAC chr6:96044339-96044439 - 55 2.82e-08 AAAGAGAGGA GGCAGCGGAAGTGGAGGAAAAGGAGGAAAA AGAGGCAGAG chr4:90729153-90729253 - 18 3.30e-08 AGTAGCATCT GAGTGAGGAAATGGAGGAACCAGAAACACA GCTCCGTCCT chr2:99170472-99170572 - 41 3.30e-08 CAAGTTCTAT CTCAGAAAGAGTAGGAGAAAAGAATATAAA TTCCACAGCG chr9:51717404-51717504 + 32 3.30e-08 ACCTGGAAAA CATGGAAAAAAGGACAGAGAGAAATGGAAA GCTCAGGCAG chr1:152466319-152466419 - 70 3.86e-08 T GAGAGAAAAAGAGTCATGAGCAGAAAGACA TGTCTGACAC chr7:133066844-133066944 + 15 4.50e-08 TATGTGAAAA CTTaaaaaaaaaaagaaaaaagaaaaaaaa TTCCGCCCCC chr1:25118914-25119014 - 2 6.53e-08 CTGACTTACT CATAGGAAGAGATAAAGGAGGGAAGAAGTA T chr1:38438414-38438514 + 17 1.15e-07 TGTGGGCCTG GAGAGGGGCTGAGGGAAGAAAGGACGGGCG TGAGTGTGTG chr1:49899447-49899547 + 3 1.50e-07 ct aattaacaaaatcagaaacgaaaagggaga tataacaacc chr6:66500146-66500246 + 43 1.60e-07 CCATCTAAGT CACTAAGAACGTCAGAGGCATGGTGGGAAA ATATTGTCAG chr12:119792557-11979265 - 26 2.66e-07 ATTTTGCTAG AAGTGGAGACGAGGAGAGGCAAGTTAAAAA TAGAATCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAKWGRRARAGWGRRARRAAARGAGARAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:29179768-29179868 8.1e-15 48_[-3]_22 chr18:14463272-14463372 1.5e-12 61_[-3]_9 chr5:25830857-25830957 1.5e-12 65_[-3]_5 chr18:59210615-59210715 1.7e-12 51_[+3]_19 chr16:35272340-35272440 5.6e-11 4_[-3]_66 chr4:76038425-76038525 1.4e-10 30_[-3]_40 chr2:102579271-102579371 1.2e-09 11_[+3]_59 chr16:41276437-41276537 2.8e-09 13_[-3]_57 chr2:6464039-6464139 3.8e-09 69_[+3]_1 chr3:116222391-116222491 4.1e-09 [-3]_70 chr10:123418232-12341833 2e-08 14_[-3]_56 chr5:118079260-118079360 2.4e-08 23_[+3]_47 chr6:96044339-96044439 2.8e-08 54_[-3]_16 chr4:90729153-90729253 3.3e-08 17_[-3]_53 chr2:99170472-99170572 3.3e-08 40_[-3]_30 chr9:51717404-51717504 3.3e-08 31_[+3]_39 chr1:152466319-152466419 3.9e-08 69_[-3]_1 chr7:133066844-133066944 4.5e-08 14_[+3]_56 chr1:25118914-25119014 6.5e-08 1_[-3]_69 chr1:38438414-38438514 1.1e-07 16_[+3]_54 chr1:49899447-49899547 1.5e-07 2_[+3]_68 chr6:66500146-66500246 1.6e-07 42_[+3]_28 chr12:119792557-11979265 2.7e-07 25_[-3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAKWGRRARAGWGRRARRAAARGAGARAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VAKWGRRARAGWGRRARRAAARGAGARAAA width=30 seqs=23 chr13:29179768-29179868 ( 49) GAGAGAGAGAGAGAGAGACAGAGAGAGAGA 1 chr18:14463272-14463372 ( 62) GAGTAGGAGAGAGAGAGAGAGAGAGAGAGA 1 chr5:25830857-25830957 ( 66) GAGAGGGAGAGAGGGAGAGAGGGTGAGAGA 1 chr18:59210615-59210715 ( 52) CAGTGAAAGGGGGAAAGACAAGGAGAGAAA 1 chr16:35272340-35272440 ( 5) AAGAGAGGAGGAGAGAGGAGAAGAGACAAA 1 chr4:76038425-76038525 ( 31) AAGAGAGAGGAAGGGAGACAGGGAGGGAAG 1 chr2:102579271-102579371 ( 12) AATAGAAAGTGGGGGAAAAAAAGAAAAACA 1 chr16:41276437-41276537 ( 14) GTTTGAGAAAGACAAAAGAAAAGAGAGTAA 1 chr2:6464039-6464139 ( 70) CAGAGAGTGAAAAAAAAAAAAAAAAAAAAA 1 chr3:116222391-116222491 ( 1) GATTGGAACAATGACAGGAGCAGAGAGAGA 1 chr10:123418232-12341833 ( 15) AAGTGGGTGAGGCGAGAAAAAAAAGAAATA 1 chr5:118079260-118079360 ( 24) CAGTGGCAGAGGGAGGGAGAAGCACAAAAG 1 chr6:96044339-96044439 ( 55) GGCAGCGGAAGTGGAGGAAAAGGAGGAAAA 1 chr4:90729153-90729253 ( 18) GAGTGAGGAAATGGAGGAACCAGAAACACA 1 chr2:99170472-99170572 ( 41) CTCAGAAAGAGTAGGAGAAAAGAATATAAA 1 chr9:51717404-51717504 ( 32) CATGGAAAAAAGGACAGAGAGAAATGGAAA 1 chr1:152466319-152466419 ( 70) GAGAGAAAAAGAGTCATGAGCAGAAAGACA 1 chr7:133066844-133066944 ( 15) CTTAAAAAAAAAAAGAAAAAAGAAAAAAAA 1 chr1:25118914-25119014 ( 2) CATAGGAAGAGATAAAGGAGGGAAGAAGTA 1 chr1:38438414-38438514 ( 17) GAGAGGGGCTGAGGGAAGAAAGGACGGGCG 1 chr1:49899447-49899547 ( 3) AATTAACAAAATCAGAAACGAAAAGGGAGA 1 chr6:66500146-66500246 ( 43) CACTAAGAACGTCAGAGGCATGGTGGGAAA 1 chr12:119792557-11979265 ( 26) AAGTGGAGACGAGGAGAGGCAAGTTAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAKWGRRARAGWGRRARRAAARGAGARAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 11.9188 E= 3.8e-016 -12 69 86 -1117 154 -1117 -231 -112 -1117 -73 139 10 88 -1117 -231 62 -71 -1117 193 -1117 110 -231 69 -1117 46 -131 127 -1117 129 -1117 1 -171 62 -131 115 -1117 129 -131 -73 -171 10 -1117 169 -1117 88 -1117 1 -12 -112 -31 159 -270 99 -1117 86 -270 29 -73 127 -1117 146 -1117 1 -1117 29 -1117 149 -270 120 -1117 69 -1117 99 1 1 -1117 129 -131 1 -1117 99 -73 27 -270 99 -1117 101 -1117 10 -231 159 -1117 161 -1117 -1117 -112 -38 -131 139 -112 138 -1117 27 -1117 29 -131 127 -270 161 -1117 -131 -270 88 -31 1 -171 161 -1117 -73 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAKWGRRARAGWGRRARRAAARGAGARAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 23 E= 3.8e-016 0.260870 0.347826 0.391304 0.000000 0.826087 0.000000 0.043478 0.130435 0.000000 0.130435 0.565217 0.304348 0.521739 0.000000 0.043478 0.434783 0.173913 0.000000 0.826087 0.000000 0.608696 0.043478 0.347826 0.000000 0.391304 0.086957 0.521739 0.000000 0.695652 0.000000 0.217391 0.086957 0.434783 0.086957 0.478261 0.000000 0.695652 0.086957 0.130435 0.086957 0.304348 0.000000 0.695652 0.000000 0.521739 0.000000 0.217391 0.260870 0.130435 0.173913 0.652174 0.043478 0.565217 0.000000 0.391304 0.043478 0.347826 0.130435 0.521739 0.000000 0.782609 0.000000 0.217391 0.000000 0.347826 0.000000 0.608696 0.043478 0.652174 0.000000 0.347826 0.000000 0.565217 0.217391 0.217391 0.000000 0.695652 0.086957 0.217391 0.000000 0.565217 0.130435 0.260870 0.043478 0.565217 0.000000 0.434783 0.000000 0.304348 0.043478 0.652174 0.000000 0.869565 0.000000 0.000000 0.130435 0.217391 0.086957 0.565217 0.130435 0.739130 0.000000 0.260870 0.000000 0.347826 0.086957 0.521739 0.043478 0.869565 0.000000 0.086957 0.043478 0.521739 0.173913 0.217391 0.086957 0.869565 0.000000 0.130435 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAKWGRRARAGWGRRARRAAARGAGARAAA MEME-3 regular expression -------------------------------------------------------------------------------- [GCA]A[GT][AT]G[AG][GA][AG][GA]A[GA][ATG]G[AG][GA][AG][GA][AG][ACG][AG][AG][AG][GA]A[GA][AG][GA]A[AG]A -------------------------------------------------------------------------------- Time 1335.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CMCCACCCACA MEME-4 width = 11 sites = 36 llr = 375 E-value = 7.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMCCACCCACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :4218:2:8:7 pos.-specific C 7589:98a2a: probability G 1:::::::::2 matrix T 21::2:::::1 bits 2.2 * * 2.0 * * 1.8 * * * 1.5 * * * * Relative 1.3 * *** * Entropy 1.1 ******** (15.0 bits) 0.9 * ******** 0.7 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CCCCACCCACA consensus AA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCCACCCACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr3:105488387-105488487 + 28 1.09e-07 ATGTATTCAT CCCCACCCACA TGCCTGGTGT chr10:56892403-56892503 + 64 2.51e-07 CCACCCAAAA CACCACCCACA CGGCAACTCT chr1:152522167-152522267 + 43 6.68e-07 acccacacac ccacacccaca gacacacagc chr4:98600411-98600511 + 38 6.68e-07 cagctggtca ccacacccaca gtcaggaagc chr2:28412907-28413007 + 39 1.03e-06 AGGCTGGTGG CACCACCCCCA TGTGGGCGGC chr2:97586263-97586363 + 52 1.03e-06 CAGAATTAAA CACCACCCCCA GGAGAAATCT chr15:32129032-32129132 + 14 1.17e-06 ctgcctccag ctccacccaca tccttttcca chr18:75500835-75500935 - 5 1.17e-06 GAGCTAGAAT CTCCACCCACA CCCA chr13:93440150-93440250 + 30 1.42e-06 atccaacccc ccccacacaca agcactccca chr8:72918420-72918520 + 34 1.72e-06 ggttaaatcc caacacccaca tggtggctca chr19:14353131-14353231 - 6 1.72e-06 AGTGACTTAG CAACACCCACA CAGTC chr19:19644407-19644507 - 48 2.11e-06 TCACATATTT CACCTCCCACA TTTTCTTTTA chr19:36701346-36701446 - 32 2.11e-06 TGTTTCAGTT TACCACCCACA GCCTTAACCA chrX:108787872-108787972 + 72 2.25e-06 TGACCAACAA CCCAACCCACA TGCATTTTGC chr3:136993359-136993459 + 10 2.58e-06 TACTGGGCT CACCACACACA CTCTGTCTCA chr3:133445527-133445627 - 61 3.11e-06 TTGATACATT TCCCACCCACG CAGAGAGGAG chr13:36492349-36492449 - 45 4.84e-06 GTGACAATAA CCCCACCCCCT CTACAGTAGC chr11:52648201-52648301 - 73 6.09e-06 CAAAGACCAC TCCCTCCCACA CGCCAGTCAC chr2:136107452-136107552 + 71 6.09e-06 AGGAATGACT TCCCTCCCACA GACTCTAAAG chr1:39832640-39832740 - 43 7.00e-06 AGAGCCTTAC CCCAACCCCCA GGTTTCTCCG chr4:76881563-76881663 + 62 7.00e-06 cagtgcagga ttccacccaca gttggtagat chr18:76479891-76479991 - 20 7.00e-06 CAGCCATAGG CCACACACACA GGATCCACTC chr5:4979525-4979625 + 55 8.08e-06 TCTGCTCAGT CCCCTCCCACT TCTACGAAAG chr16:22462722-22462822 - 24 8.08e-06 GAAAAATTCG TCCCACACACA AAGAGTTGAC chr4:127552424-127552524 + 28 1.12e-05 CATTTTTTCA CACAACCCCCA GGGATTTATC chr15:67152646-67152746 + 10 1.26e-05 GCTTTGCTA CTCAACCCACA GAAGAGTCTG chr4:87273402-87273502 - 1 1.48e-05 GTGTGCTGAA CACCACACACT chr1:38438414-38438514 - 49 1.48e-05 TGTCATCTGT CACCACACACT CACGCCCGTC chr8:32290084-32290184 + 57 1.60e-05 AGGGCAACCT GACCACACACA GCTGAGGAGG chr18:68009562-68009662 - 71 1.91e-05 CATAGACAGA CCAAACCCACG AAACCAAGTT chr4:153208179-153208279 - 39 2.16e-05 CATGACAACC GAACACCCACG AGTCATTTAA chr1:151087807-151087907 + 65 2.29e-05 GGCTGCAGAG CCCCATCCACG CACTGAGTCA chr6:55950641-55950741 - 55 3.13e-05 GGCAGCATTA CACCAACCACG GAGGAGCCAG chr9:69239120-69239220 + 45 4.26e-05 AAAAGAAAGC GCCCTCCCCCG TAAGCTTGCT chr18:68562828-68562928 - 57 5.53e-05 ATTTCTCAGA TAACTCCCACG GAGTCCTTCC chr2:30707890-30707990 + 53 1.13e-04 GAggggcggc gcgcacccccg ctgcgaggcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCCACCCACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:105488387-105488487 1.1e-07 27_[+4]_62 chr10:56892403-56892503 2.5e-07 63_[+4]_26 chr1:152522167-152522267 6.7e-07 42_[+4]_47 chr4:98600411-98600511 6.7e-07 37_[+4]_52 chr2:28412907-28413007 1e-06 38_[+4]_51 chr2:97586263-97586363 1e-06 51_[+4]_38 chr15:32129032-32129132 1.2e-06 13_[+4]_76 chr18:75500835-75500935 1.2e-06 4_[-4]_85 chr13:93440150-93440250 1.4e-06 29_[+4]_60 chr8:72918420-72918520 1.7e-06 33_[+4]_56 chr19:14353131-14353231 1.7e-06 5_[-4]_84 chr19:19644407-19644507 2.1e-06 47_[-4]_42 chr19:36701346-36701446 2.1e-06 31_[-4]_58 chrX:108787872-108787972 2.3e-06 71_[+4]_18 chr3:136993359-136993459 2.6e-06 9_[+4]_80 chr3:133445527-133445627 3.1e-06 60_[-4]_29 chr13:36492349-36492449 4.8e-06 44_[-4]_45 chr11:52648201-52648301 6.1e-06 72_[-4]_17 chr2:136107452-136107552 6.1e-06 70_[+4]_19 chr1:39832640-39832740 7e-06 42_[-4]_47 chr4:76881563-76881663 7e-06 61_[+4]_28 chr18:76479891-76479991 7e-06 19_[-4]_70 chr5:4979525-4979625 8.1e-06 54_[+4]_35 chr16:22462722-22462822 8.1e-06 23_[-4]_66 chr4:127552424-127552524 1.1e-05 27_[+4]_62 chr15:67152646-67152746 1.3e-05 9_[+4]_80 chr4:87273402-87273502 1.5e-05 [-4]_89 chr1:38438414-38438514 1.5e-05 48_[-4]_41 chr8:32290084-32290184 1.6e-05 56_[+4]_33 chr18:68009562-68009662 1.9e-05 70_[-4]_19 chr4:153208179-153208279 2.2e-05 38_[-4]_51 chr1:151087807-151087907 2.3e-05 64_[+4]_25 chr6:55950641-55950741 3.1e-05 54_[-4]_35 chr9:69239120-69239220 4.3e-05 44_[+4]_45 chr18:68562828-68562928 5.5e-05 56_[-4]_33 chr2:30707890-30707990 0.00011 52_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCCACCCACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMCCACCCACA width=11 seqs=36 chr3:105488387-105488487 ( 28) CCCCACCCACA 1 chr10:56892403-56892503 ( 64) CACCACCCACA 1 chr1:152522167-152522267 ( 43) CCACACCCACA 1 chr4:98600411-98600511 ( 38) CCACACCCACA 1 chr2:28412907-28413007 ( 39) CACCACCCCCA 1 chr2:97586263-97586363 ( 52) CACCACCCCCA 1 chr15:32129032-32129132 ( 14) CTCCACCCACA 1 chr18:75500835-75500935 ( 5) CTCCACCCACA 1 chr13:93440150-93440250 ( 30) CCCCACACACA 1 chr8:72918420-72918520 ( 34) CAACACCCACA 1 chr19:14353131-14353231 ( 6) CAACACCCACA 1 chr19:19644407-19644507 ( 48) CACCTCCCACA 1 chr19:36701346-36701446 ( 32) TACCACCCACA 1 chrX:108787872-108787972 ( 72) CCCAACCCACA 1 chr3:136993359-136993459 ( 10) CACCACACACA 1 chr3:133445527-133445627 ( 61) TCCCACCCACG 1 chr13:36492349-36492449 ( 45) CCCCACCCCCT 1 chr11:52648201-52648301 ( 73) TCCCTCCCACA 1 chr2:136107452-136107552 ( 71) TCCCTCCCACA 1 chr1:39832640-39832740 ( 43) CCCAACCCCCA 1 chr4:76881563-76881663 ( 62) TTCCACCCACA 1 chr18:76479891-76479991 ( 20) CCACACACACA 1 chr5:4979525-4979625 ( 55) CCCCTCCCACT 1 chr16:22462722-22462822 ( 24) TCCCACACACA 1 chr4:127552424-127552524 ( 28) CACAACCCCCA 1 chr15:67152646-67152746 ( 10) CTCAACCCACA 1 chr4:87273402-87273502 ( 1) CACCACACACT 1 chr1:38438414-38438514 ( 49) CACCACACACT 1 chr8:32290084-32290184 ( 57) GACCACACACA 1 chr18:68009562-68009662 ( 71) CCAAACCCACG 1 chr4:153208179-153208279 ( 39) GAACACCCACG 1 chr1:151087807-151087907 ( 65) CCCCATCCACG 1 chr6:55950641-55950741 ( 55) CACCAACCACG 1 chr9:69239120-69239220 ( 45) GCCCTCCCCCG 1 chr18:68562828-68562928 ( 57) TAACTCCCACG 1 chr2:30707890-30707990 ( 53) GCGCACCCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCCACCCACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.3982 E= 7.3e+001 -1181 168 -96 -55 55 113 -1181 -135 -35 179 -296 -1181 -103 199 -1181 -1181 155 -1181 -1181 -77 -335 213 -1181 -335 -55 190 -1181 -1181 -1181 221 -1181 -1181 150 -15 -1181 -1181 -1181 221 -1181 -1181 123 -1181 4 -135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCCACCCACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 36 E= 7.3e+001 0.000000 0.694444 0.111111 0.194444 0.416667 0.472222 0.000000 0.111111 0.222222 0.750000 0.027778 0.000000 0.138889 0.861111 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.027778 0.944444 0.000000 0.027778 0.194444 0.805556 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.805556 0.194444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.222222 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMCCACCCACA MEME-4 regular expression -------------------------------------------------------------------------------- C[CA][CA]CACCCAC[AG] -------------------------------------------------------------------------------- Time 1739.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGSARCAGCA MEME-5 width = 11 sites = 27 llr = 298 E-value = 3.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGSARCAGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1:2851a:1a pos.-specific C 1::4119::8: probability G :9a4:3::a:: matrix T 9::::::::1: bits 2.2 * 2.0 * * 1.8 ** *** * 1.5 *** *** * Relative 1.3 *** *** * Entropy 1.1 *** * ***** (15.9 bits) 0.9 *** * ***** 0.7 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel TGGCAACAGCA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSARCAGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr14:117918685-11791878 - 53 1.88e-07 ACGGTACCCA TGGCAACAGCA TTTAACTAAC chr2:37908686-37908786 + 75 1.88e-07 AGAATTGCCA TGGCAACAGCA GCCACACATA chr10:57183515-57183615 + 43 1.88e-07 TTGTTTCAGA TGGCAACAGCA CCCCCTGGTG chr13:103806056-10380615 + 66 5.18e-07 GCCTGACTGT TGGCAGCAGCA GCTACCTAGT chr17:65374475-65374575 - 42 5.18e-07 GCAGCAGCAG TGGCAGCAGCA TGGAGGGAGA chr4:152568947-152569047 + 5 6.61e-07 AAGC TGGGAGCAGCA GCTTCCTCTT chr12:40511713-40511813 - 23 1.19e-06 AGATGGTATC TGGAAACAGCA CAAAGCCTGC chr10:13596021-13596121 - 82 1.19e-06 GGCTTCCA TGGAAACAGCA GGAATGCAGG chr13:107449383-10744948 + 5 1.19e-06 GGAA TGGGACCAGCA GTTCAAGAGC chr6:148553567-148553667 + 8 1.77e-06 ctaaaaa tggccgcagca atatttctgg chr10:68635464-68635564 - 10 2.07e-06 CTTCTGTCTC TGGAACCAGCA TAAACGAGA chr2:108813030-108813130 + 7 3.50e-06 CTCTGA TAGCAACAGCA GACAGAATGA chr19:23056817-23056917 + 75 3.75e-06 CAGCGCAGCC CGGCAGCAGCA GGCACCACCG chr13:99849579-99849679 - 52 5.35e-06 CACGCGCTTA TAGCAGCAGCA ACAGCAAACC chr1:39832640-39832740 - 78 5.35e-06 TTATTCTCCA TGGCAACAGAA GAACAGATGA chr9:104784938-104785038 - 7 5.35e-06 AGCAGAGAGG TGGGAAAAGCA GCATCC chr4:52336286-52336386 + 3 6.41e-06 AC TGGGAACAGAA CCTGCAAAGC chr8:28336943-28337043 + 49 7.60e-06 ctatggggtg tgggaacagga tggccattta chr10:6152927-6153027 - 63 8.81e-06 ATCACCAAAA TGGAAACAGTA GTGGGAAGGA chr16:95334163-95334263 + 75 1.10e-05 CAAAAATGGG TGGAAGCAGTA GAGCTGGAGA chr1:38438414-38438514 + 80 1.10e-05 GAGTGCTGTT TGGGACAAGCA GTTGGAGAAA chr10:54329576-54329676 - 70 1.10e-05 AAACTGAGAC TGGGTGCAGCA TTGTGGTGGT chr13:108563118-10856321 - 59 1.10e-05 TATTCAGGAG TGGGACAAGCA GAACATAAGG chr2:102785971-102786071 + 42 1.16e-05 GCTTGGAGAG TGGCCACAGTA ACCCAGTTTC chr17:9776235-9776335 - 9 1.16e-05 GGCATTGCCA TGGCAACAACA CTGATGGG chr13:10725746-10725846 + 2 1.56e-05 T TAGGCACAGCA GTCAAAACCC chr13:40651096-40651196 - 81 1.58e-05 AACAAGTGG CGGGCGCAGCA GAGGACAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSARCAGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:117918685-11791878 1.9e-07 52_[-5]_37 chr2:37908686-37908786 1.9e-07 74_[+5]_15 chr10:57183515-57183615 1.9e-07 42_[+5]_47 chr13:103806056-10380615 5.2e-07 65_[+5]_24 chr17:65374475-65374575 5.2e-07 41_[-5]_48 chr4:152568947-152569047 6.6e-07 4_[+5]_85 chr12:40511713-40511813 1.2e-06 22_[-5]_67 chr10:13596021-13596121 1.2e-06 81_[-5]_8 chr13:107449383-10744948 1.2e-06 4_[+5]_85 chr6:148553567-148553667 1.8e-06 7_[+5]_82 chr10:68635464-68635564 2.1e-06 9_[-5]_80 chr2:108813030-108813130 3.5e-06 6_[+5]_83 chr19:23056817-23056917 3.7e-06 74_[+5]_15 chr13:99849579-99849679 5.3e-06 51_[-5]_38 chr1:39832640-39832740 5.3e-06 77_[-5]_12 chr9:104784938-104785038 5.3e-06 6_[-5]_83 chr4:52336286-52336386 6.4e-06 2_[+5]_87 chr8:28336943-28337043 7.6e-06 48_[+5]_41 chr10:6152927-6153027 8.8e-06 62_[-5]_27 chr16:95334163-95334263 1.1e-05 74_[+5]_15 chr1:38438414-38438514 1.1e-05 79_[+5]_10 chr10:54329576-54329676 1.1e-05 69_[-5]_20 chr13:108563118-10856321 1.1e-05 58_[-5]_31 chr2:102785971-102786071 1.2e-05 41_[+5]_48 chr17:9776235-9776335 1.2e-05 8_[-5]_81 chr13:10725746-10725846 1.6e-05 1_[+5]_88 chr13:40651096-40651196 1.6e-05 80_[-5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSARCAGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGSARCAGCA width=11 seqs=27 chr14:117918685-11791878 ( 53) TGGCAACAGCA 1 chr2:37908686-37908786 ( 75) TGGCAACAGCA 1 chr10:57183515-57183615 ( 43) TGGCAACAGCA 1 chr13:103806056-10380615 ( 66) TGGCAGCAGCA 1 chr17:65374475-65374575 ( 42) TGGCAGCAGCA 1 chr4:152568947-152569047 ( 5) TGGGAGCAGCA 1 chr12:40511713-40511813 ( 23) TGGAAACAGCA 1 chr10:13596021-13596121 ( 82) TGGAAACAGCA 1 chr13:107449383-10744948 ( 5) TGGGACCAGCA 1 chr6:148553567-148553667 ( 8) TGGCCGCAGCA 1 chr10:68635464-68635564 ( 10) TGGAACCAGCA 1 chr2:108813030-108813130 ( 7) TAGCAACAGCA 1 chr19:23056817-23056917 ( 75) CGGCAGCAGCA 1 chr13:99849579-99849679 ( 52) TAGCAGCAGCA 1 chr1:39832640-39832740 ( 78) TGGCAACAGAA 1 chr9:104784938-104785038 ( 7) TGGGAAAAGCA 1 chr4:52336286-52336386 ( 3) TGGGAACAGAA 1 chr8:28336943-28337043 ( 49) TGGGAACAGGA 1 chr10:6152927-6153027 ( 63) TGGAAACAGTA 1 chr16:95334163-95334263 ( 75) TGGAAGCAGTA 1 chr1:38438414-38438514 ( 80) TGGGACAAGCA 1 chr10:54329576-54329676 ( 70) TGGGTGCAGCA 1 chr13:108563118-10856321 ( 59) TGGGACAAGCA 1 chr2:102785971-102786071 ( 42) TGGCCACAGTA 1 chr17:9776235-9776335 ( 9) TGGCAACAACA 1 chr13:10725746-10725846 ( 2) TAGGCACAGCA 1 chr13:40651096-40651196 ( 81) CGGGCGCAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSARCAGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.5343 E= 3.1e+001 -1140 -154 -1140 171 -135 -1140 204 -1140 -1140 -1140 221 -1140 -62 104 78 -1140 152 -55 -1140 -293 87 -55 62 -1140 -135 204 -1140 -1140 182 -1140 -1140 -1140 -293 -1140 215 -1140 -194 185 -254 -135 182 -1140 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSARCAGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 27 E= 3.1e+001 0.000000 0.074074 0.000000 0.925926 0.111111 0.000000 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.185185 0.444444 0.370370 0.000000 0.814815 0.148148 0.000000 0.037037 0.518519 0.148148 0.333333 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.037037 0.000000 0.962963 0.000000 0.074074 0.777778 0.037037 0.111111 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGSARCAGCA MEME-5 regular expression -------------------------------------------------------------------------------- TGG[CG]A[AG]CAGCA -------------------------------------------------------------------------------- Time 2139.19 secs. ******************************************************************************** ******************************************************************************** MOTIF RCCACTAGAKGGCR MEME-6 width = 14 sites = 20 llr = 254 E-value = 8.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCCACTAGAKGGCR MEME-6 Description -------------------------------------------------------------------------------- Simplified A 41:8129:7:::27 pos.-specific C 18a:8:1::1::8: probability G 51:12::a34a8:4 matrix T 12:2:91::6:21: bits 2.2 * * * 2.0 * * * 1.8 * * * 1.5 * * * Relative 1.3 * * ** *** Entropy 1.1 * ***** **** (18.3 bits) 0.9 ************* 0.7 ************* 0.4 ************** 0.2 ************** 0.0 -------------- Multilevel GCCACTAGATGGCA consensus A GG T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACTAGAKGGCR MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr16:49164301-49164401 + 33 1.68e-08 ACCGCTCACT ACCACTAGATGGCA GCACACCTCA chr5:49370661-49370761 + 4 5.03e-08 GTG GCCACAAGAGGGCA TAATCCTCAA chr12:65931788-65931888 + 23 5.03e-08 TGCTAGACTT GCCACTAGATGTCA CACAGCTCTT chr8:32290084-32290184 + 39 6.18e-08 ATGGTGTGTA GTCACTAGAGGGCA ACCTGACCAC chr13:107238944-10723904 + 33 6.76e-08 TGCTTTCATA GCCACTAGAGGGAA GCCTCTGAAA chr16:70654374-70654474 - 79 1.36e-07 TCCCCTAG ACCTCTAGATGGCA AACTTTAGCA chr9:100917054-100917154 - 53 2.86e-07 TGTAGAAACC ATCACTAGGGGGCA CTGGAGCAAA chr1:41152463-41152563 + 69 4.18e-07 GTTCTCAGGC ACCACTAGGTGGAG ATGTAGGTTT chrX:94185089-94185189 + 20 4.18e-07 atgcctgaag gccagaagagggca ccagatctca chr1:137225449-137225549 - 39 4.62e-07 CTGGCTTTTA TCCACTAGATGTCA GTCACGCAGT chr8:55406877-55406977 + 41 4.62e-07 GATTTTCACT TCCACTAGATGTCA GTGTCTGATA chr18:52935129-52935229 - 29 5.21e-07 GGCAGCCTCA GGCACTAGGGGGCG TTGAGCTTCA chr15:31315605-31315705 + 15 8.27e-07 TCCAAATCGG GCCAGTAGAGGGAG CTGTTGGCTT chr1:150540204-150540304 + 32 1.10e-06 TGTGTTAATC ACCAGTAGATGTCG CCATGAGAAC chrX:164183790-164183890 + 10 1.47e-06 CCCTGACAC CTCACTAGGTGGCA CTATTGAGCT chr3:13866273-13866373 - 52 1.74e-06 TCTCAGTTTC ACCACACGATGGCA CCAAAGTGCT chr2:59424657-59424757 - 82 2.11e-06 CAGAG GCCTCTAGATGGTG CACAGACCGT chr16:73258816-73258916 - 40 2.87e-06 GTAGAAACTC GCCACTTGGCGGCA TCATCATGAA chr6:85236968-85237068 + 15 3.33e-06 GGGAGTTGCC ACCTATAGAGGGCG CTGCTCGCCT chr7:68829775-68829875 - 75 5.43e-06 GGGAACGTCT GACGCTAGGTGGCG CTGCTCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACTAGAKGGCR MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:49164301-49164401 1.7e-08 32_[+6]_54 chr5:49370661-49370761 5e-08 3_[+6]_83 chr12:65931788-65931888 5e-08 22_[+6]_64 chr8:32290084-32290184 6.2e-08 38_[+6]_48 chr13:107238944-10723904 6.8e-08 32_[+6]_54 chr16:70654374-70654474 1.4e-07 78_[-6]_8 chr9:100917054-100917154 2.9e-07 52_[-6]_34 chr1:41152463-41152563 4.2e-07 68_[+6]_18 chrX:94185089-94185189 4.2e-07 19_[+6]_67 chr1:137225449-137225549 4.6e-07 38_[-6]_48 chr8:55406877-55406977 4.6e-07 40_[+6]_46 chr18:52935129-52935229 5.2e-07 28_[-6]_58 chr15:31315605-31315705 8.3e-07 14_[+6]_72 chr1:150540204-150540304 1.1e-06 31_[+6]_55 chrX:164183790-164183890 1.5e-06 9_[+6]_77 chr3:13866273-13866373 1.7e-06 51_[-6]_35 chr2:59424657-59424757 2.1e-06 81_[-6]_5 chr16:73258816-73258916 2.9e-06 39_[-6]_47 chr6:85236968-85237068 3.3e-06 14_[+6]_72 chr7:68829775-68829875 5.4e-06 74_[-6]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACTAGAKGGCR MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCCACTAGAKGGCR width=14 seqs=20 chr16:49164301-49164401 ( 33) ACCACTAGATGGCA 1 chr5:49370661-49370761 ( 4) GCCACAAGAGGGCA 1 chr12:65931788-65931888 ( 23) GCCACTAGATGTCA 1 chr8:32290084-32290184 ( 39) GTCACTAGAGGGCA 1 chr13:107238944-10723904 ( 33) GCCACTAGAGGGAA 1 chr16:70654374-70654474 ( 79) ACCTCTAGATGGCA 1 chr9:100917054-100917154 ( 53) ATCACTAGGGGGCA 1 chr1:41152463-41152563 ( 69) ACCACTAGGTGGAG 1 chrX:94185089-94185189 ( 20) GCCAGAAGAGGGCA 1 chr1:137225449-137225549 ( 39) TCCACTAGATGTCA 1 chr8:55406877-55406977 ( 41) TCCACTAGATGTCA 1 chr18:52935129-52935229 ( 29) GGCACTAGGGGGCG 1 chr15:31315605-31315705 ( 15) GCCAGTAGAGGGAG 1 chr1:150540204-150540304 ( 32) ACCAGTAGATGTCG 1 chrX:164183790-164183890 ( 10) CTCACTAGGTGGCA 1 chr3:13866273-13866373 ( 52) ACCACACGATGGCA 1 chr2:59424657-59424757 ( 82) GCCTCTAGATGGTG 1 chr16:73258816-73258916 ( 40) GCCACTTGGCGGCA 1 chr6:85236968-85237068 ( 15) ACCTATAGAGGGCG 1 chr7:68829775-68829875 ( 75) GACGCTAGGTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACTAGAKGGCR MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 11.6009 E= 8.3e+000 30 -211 121 -150 -250 179 -211 -92 -1097 221 -1097 -1097 149 -1097 -211 -92 -250 189 -53 -1097 -92 -1097 -1097 158 166 -211 -1097 -250 -1097 -1097 221 -1097 130 -1097 47 -1097 -1097 -211 89 95 -1097 -1097 221 -1097 -1097 -1097 189 -50 -92 189 -1097 -250 120 -1097 69 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACTAGAKGGCR MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 20 E= 8.3e+000 0.350000 0.050000 0.500000 0.100000 0.050000 0.750000 0.050000 0.150000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.050000 0.150000 0.050000 0.800000 0.150000 0.000000 0.150000 0.000000 0.000000 0.850000 0.900000 0.050000 0.000000 0.050000 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.000000 0.050000 0.400000 0.550000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.150000 0.800000 0.000000 0.050000 0.650000 0.000000 0.350000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACTAGAKGGCR MEME-6 regular expression -------------------------------------------------------------------------------- [GA]CCACTAG[AG][TG]G[GT]C[AG] -------------------------------------------------------------------------------- Time 2538.93 secs. ******************************************************************************** ******************************************************************************** MOTIF GVAGMCWGGAGMWGG MEME-7 width = 15 sites = 31 llr = 354 E-value = 2.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVAGMCWGGAGMWGG MEME-7 Description -------------------------------------------------------------------------------- Simplified A 12913:4:192341: pos.-specific C :3::591:1::511: probability G 95:8:1:a7:82187 matrix T ::1:2:5:21::4:2 bits 2.2 * 2.0 * 1.8 * * * 1.5 * * * * Relative 1.3 * * * * ** Entropy 1.1 * ** * * ** ** (16.5 bits) 0.9 * ** * * ** ** 0.7 **** * ***** ** 0.4 ************ ** 0.2 *************** 0.0 --------------- Multilevel GGAGCCTGGAGCTGG consensus C A A AA T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGMCWGGAGMWGG MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr2:108813030-108813130 + 51 2.89e-09 AGCTTGCAGT GCAGCCAGGAGCAGG GAGCCTGTGA chr4:87273402-87273502 - 21 3.90e-08 CTGCATGTGT GAAGCCTGGAGGAGG TGTGCTGAAC chr9:23442146-23442246 - 67 3.90e-08 CTAAATTCCT GGAGCCTGCAGCAGG CCAAGCTGGA chr17:70595169-70595269 + 75 1.19e-07 GTTATGAAGT GAAGACAGGAGAAGG ACTGTGAGGA chr2:168128391-168128491 + 76 1.99e-07 ATCCCACCAA GGAGCCTGGAGCCAG CCACAAGGTG chr2:93110873-93110973 - 8 2.28e-07 TGTGTGAAGA GGAACCAGGAGGTGG GATTTTA chr1:43414848-43414948 + 38 4.64e-07 TGTTATTTAG GGAAACAGGAGATGG AACTGCCTAT chr4:148356531-148356631 + 28 5.17e-07 CTAGAGAGAA GCAGACTGCAGAAGG AGGTTGCCCA chr2:30707890-30707990 + 3 5.75e-07 CA GGAGTCTGGAACCGG CCTGACAAGC chr18:11966960-11967060 - 46 6.42e-07 TCCAGAGAGA GCTGCCAGGAGGTGG GGCCAGATCT chr1:18551219-18551319 + 8 8.81e-07 ctcccaa ggatacaggagctgg tgccaactgg chr12:63382341-63382441 - 5 9.71e-07 TCAGCACCTT GGAGGCTGTAGCAGG AAAA chr11:75313680-75313780 + 61 1.08e-06 GGCTTACTTC ACAGTCAGGAGCTGG TGCCAAAAAT chr18:82765206-82765306 + 43 1.20e-06 CTAGAAACCC GGAGTCTGGTGAAGG CATCACGTGA chr4:52336286-52336386 - 67 1.46e-06 TCCAGCACGT GGAGCCTGGAGCTTT CATCCTTGGT chr5:62041438-62041538 - 32 1.61e-06 TGGGAACTAA GAACACTGGAGCAGG TGGTGAGGAA chr16:44533374-44533474 - 66 1.61e-06 TGCCAGTACT GCAGCCTGGAGCGAT GCCAAGGGCA chr16:64265266-64265366 + 64 2.14e-06 CTTAGCGTAG GAAGCCAGGAAAAGT CATTCTTGTG chr14:107136716-10713681 + 16 2.14e-06 agaagagctt gctgacaggagctgt ctcctgaaag chr5:132663783-132663883 + 8 2.83e-06 TCAACTT GCAGCCAGCAGGAAG TGGTTGGGTG chr7:114833343-114833443 + 19 3.38e-06 ACAGCACAAG GAAGACTGTAGGTGT TTAACTGACA chr6:98981201-98981301 - 54 4.04e-06 AATGACTCAG GGAGCCAGAAGCCAG CCTCAGCTGT chr15:72503564-72503664 + 55 4.79e-06 GAGGGAAGTT GGAATCAGTAGGTGG ATATCAGCCA chr13:10725746-10725846 + 54 5.21e-06 AGAGCCTGGA GGAGCCAGAAGAACG CCTTATGTTT chr6:10167359-10167459 - 23 5.67e-06 TGGTTCCTTA GAAAACTGGAAATGG TTCTACCTGA chrX:54257537-54257637 + 49 6.72e-06 AAACTGGCTG GCAGACTGTAAAGGG GATGAACATA chr19:23056817-23056917 - 13 7.27e-06 TTTACACAAC GCAGCCCGGCACAGG CTGAGTACAG chr9:82096373-82096473 - 34 1.08e-05 AAGTATGTGG GAAGTGTGGAGATGT GTGCTTGTAA chr10:12019188-12019288 - 6 1.46e-05 AATCATCCAA GGAGACTGGTACTCG CTCTG chr6:56651941-56652041 - 32 2.75e-05 CCAAAGTTGG AGAGCGCGGAGCTGT CCCCCGTGCG chr1:159386445-159386545 + 6 4.91e-05 GTGCT GCAGTCCGTAGCGGA GAGTGTGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGMCWGGAGMWGG MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:108813030-108813130 2.9e-09 50_[+7]_35 chr4:87273402-87273502 3.9e-08 20_[-7]_65 chr9:23442146-23442246 3.9e-08 66_[-7]_19 chr17:70595169-70595269 1.2e-07 74_[+7]_11 chr2:168128391-168128491 2e-07 75_[+7]_10 chr2:93110873-93110973 2.3e-07 7_[-7]_78 chr1:43414848-43414948 4.6e-07 37_[+7]_48 chr4:148356531-148356631 5.2e-07 27_[+7]_58 chr2:30707890-30707990 5.7e-07 2_[+7]_83 chr18:11966960-11967060 6.4e-07 45_[-7]_40 chr1:18551219-18551319 8.8e-07 7_[+7]_78 chr12:63382341-63382441 9.7e-07 4_[-7]_81 chr11:75313680-75313780 1.1e-06 60_[+7]_25 chr18:82765206-82765306 1.2e-06 42_[+7]_43 chr4:52336286-52336386 1.5e-06 66_[-7]_19 chr5:62041438-62041538 1.6e-06 31_[-7]_54 chr16:44533374-44533474 1.6e-06 65_[-7]_20 chr16:64265266-64265366 2.1e-06 63_[+7]_22 chr14:107136716-10713681 2.1e-06 15_[+7]_70 chr5:132663783-132663883 2.8e-06 7_[+7]_78 chr7:114833343-114833443 3.4e-06 18_[+7]_67 chr6:98981201-98981301 4e-06 53_[-7]_32 chr15:72503564-72503664 4.8e-06 54_[+7]_31 chr13:10725746-10725846 5.2e-06 53_[+7]_32 chr6:10167359-10167459 5.7e-06 22_[-7]_63 chrX:54257537-54257637 6.7e-06 48_[+7]_37 chr19:23056817-23056917 7.3e-06 12_[-7]_73 chr9:82096373-82096473 1.1e-05 33_[-7]_52 chr10:12019188-12019288 1.5e-05 5_[-7]_80 chr6:56651941-56652041 2.7e-05 31_[-7]_54 chr1:159386445-159386545 4.9e-05 5_[+7]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGMCWGGAGMWGG MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVAGMCWGGAGMWGG width=15 seqs=31 chr2:108813030-108813130 ( 51) GCAGCCAGGAGCAGG 1 chr4:87273402-87273502 ( 21) GAAGCCTGGAGGAGG 1 chr9:23442146-23442246 ( 67) GGAGCCTGCAGCAGG 1 chr17:70595169-70595269 ( 75) GAAGACAGGAGAAGG 1 chr2:168128391-168128491 ( 76) GGAGCCTGGAGCCAG 1 chr2:93110873-93110973 ( 8) GGAACCAGGAGGTGG 1 chr1:43414848-43414948 ( 38) GGAAACAGGAGATGG 1 chr4:148356531-148356631 ( 28) GCAGACTGCAGAAGG 1 chr2:30707890-30707990 ( 3) GGAGTCTGGAACCGG 1 chr18:11966960-11967060 ( 46) GCTGCCAGGAGGTGG 1 chr1:18551219-18551319 ( 8) GGATACAGGAGCTGG 1 chr12:63382341-63382441 ( 5) GGAGGCTGTAGCAGG 1 chr11:75313680-75313780 ( 61) ACAGTCAGGAGCTGG 1 chr18:82765206-82765306 ( 43) GGAGTCTGGTGAAGG 1 chr4:52336286-52336386 ( 67) GGAGCCTGGAGCTTT 1 chr5:62041438-62041538 ( 32) GAACACTGGAGCAGG 1 chr16:44533374-44533474 ( 66) GCAGCCTGGAGCGAT 1 chr16:64265266-64265366 ( 64) GAAGCCAGGAAAAGT 1 chr14:107136716-10713681 ( 16) GCTGACAGGAGCTGT 1 chr5:132663783-132663883 ( 8) GCAGCCAGCAGGAAG 1 chr7:114833343-114833443 ( 19) GAAGACTGTAGGTGT 1 chr6:98981201-98981301 ( 54) GGAGCCAGAAGCCAG 1 chr15:72503564-72503664 ( 55) GGAATCAGTAGGTGG 1 chr13:10725746-10725846 ( 54) GGAGCCAGAAGAACG 1 chr6:10167359-10167459 ( 23) GAAAACTGGAAATGG 1 chrX:54257537-54257637 ( 49) GCAGACTGTAAAGGG 1 chr19:23056817-23056917 ( 13) GCAGCCCGGCACAGG 1 chr9:82096373-82096473 ( 34) GAAGTGTGGAGATGT 1 chr10:12019188-12019288 ( 6) GGAGACTGGTACTCG 1 chr6:56651941-56652041 ( 32) AGAGCGCGGAGCTGT 1 chr1:159386445-159386545 ( 6) GCAGTCCGTAGCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGMCWGGAGMWGG MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.4066 E= 2.0e+000 -214 -1160 211 -1160 -33 58 106 -1160 172 -1160 -1160 -214 -114 -274 190 -313 18 106 -274 -55 -1160 211 -174 -1160 56 -116 -1160 77 -1160 -1160 221 -1160 -214 -116 165 -81 167 -274 -1160 -214 -55 -1160 190 -1160 3 126 -16 -1160 45 -116 -116 56 -114 -174 184 -313 -313 -1160 178 -33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGMCWGGAGMWGG MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 31 E= 2.0e+000 0.064516 0.000000 0.935484 0.000000 0.225806 0.322581 0.451613 0.000000 0.935484 0.000000 0.000000 0.064516 0.129032 0.032258 0.806452 0.032258 0.322581 0.451613 0.032258 0.193548 0.000000 0.935484 0.064516 0.000000 0.419355 0.096774 0.000000 0.483871 0.000000 0.000000 1.000000 0.000000 0.064516 0.096774 0.677419 0.161290 0.903226 0.032258 0.000000 0.064516 0.193548 0.000000 0.806452 0.000000 0.290323 0.516129 0.193548 0.000000 0.387097 0.096774 0.096774 0.419355 0.129032 0.064516 0.774194 0.032258 0.032258 0.000000 0.741935 0.225806 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGMCWGGAGMWGG MEME-7 regular expression -------------------------------------------------------------------------------- G[GCA]AG[CA]C[TA]GGAG[CA][TA]G[GT] -------------------------------------------------------------------------------- Time 2934.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGWG MEME-8 width = 6 sites = 123 llr = 978 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGWG MEME-8 Description -------------------------------------------------------------------------------- Simplified A ::::5: pos.-specific C :a:::: probability G a::a:a matrix T ::a:5: bits 2.2 ** * * 2.0 ** * * 1.8 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 **** * (11.5 bits) 0.9 ****** 0.7 ****** 0.4 ****** 0.2 ****** 0.0 ------ Multilevel GCTGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGWG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------ chr11:87955078-87955178 + 26 1.76e-04 aaccacactg gctgtg gggccagtgg chr6:101226506-101226606 - 55 1.76e-04 ATCCTCTCCC GCTGTG CCACGGGAAG chr5:41076356-41076456 - 26 1.76e-04 CCTGGAGTGA GCTGTG AAAGTAGCTT chr1:106069517-106069617 - 5 1.76e-04 AAGATTGTGT GCTGTG GAAC chr13:5398967-5399067 - 58 1.76e-04 AGAATCTCTT GCTGTG CAGAACTGGG chr1:22748555-22748655 - 60 1.76e-04 CCACCTTTTA GCTGTG TTTTAAGTGC chrX:140871130-140871230 + 48 1.76e-04 TGTAGTCTCA GCTGTG CTCTCAGCTT chr11:94881155-94881255 - 31 1.76e-04 CCTCCCAAGT GCTGTG CTGGCGGCTC chr4:50507443-50507543 + 17 1.76e-04 tggagctaaa gctgtg aacatctgtg chr5:36719076-36719176 - 65 1.76e-04 GGGTCAGTGT GCTGTG AGGAAATGGG chr5:49370661-49370761 - 80 1.76e-04 AATGAAACAG GCTGTG CTGAAATATT chr5:71842203-71842303 - 28 1.76e-04 GGCAGACATT GCTGTG AAGGACTTCA chr17:94226093-94226193 - 74 1.76e-04 AAAAGAGGGT GCTGTG TAACCATGAC chr2:99170472-99170572 + 32 1.76e-04 TTTTGCTGAC GCTGTG GAATTTATAT chr1:83582969-83583069 + 79 1.76e-04 TCTACAGAGA GCTGTG TCTGTGCTAT chr3:102691722-102691822 - 52 1.76e-04 TCCTCAACCA GCTGTG AGAGAGGCTG chr10:96697660-96697760 - 61 1.76e-04 TCCACAGCCT GCTGTG TGTAGTTAGT chr18:82765206-82765306 + 6 1.76e-04 GTGGC GCTGTG GGCAATTTTT chr1:55454016-55454116 + 57 1.76e-04 GTCACTCAGG GCTGTG TGTCTCAGTT chr2:59533454-59533554 - 74 1.76e-04 CAATCCCTAG GCTGTG TCTCATGAGT chrX:132915560-132915660 - 12 1.76e-04 GGCAGACAAA GCTGTG AAATAGTAAG chr6:148553567-148553667 + 60 1.76e-04 tatgTGTGAG GCTGTG TGCCCAAATG chr9:70232416-70232516 - 20 1.76e-04 CTTAGCAAGA GCTGTG TGTGCAATGA chr10:95033461-95033561 - 67 1.76e-04 CCAGTGCAGT GCTGTG TACCCTCTGA chr2:18952349-18952449 - 41 1.76e-04 AACATCACAG GCTGTG TGGCTGCATA chr10:126814905-12681500 + 67 1.76e-04 GTGCTTAGAC GCTGTG GTTTTAAGAC chr16:70654374-70654474 - 24 1.76e-04 TCTTACTGAT GCTGTG TAATCCACCT chr6:98981201-98981301 - 28 1.76e-04 GCTCCCCGTG GCTGTG CTGCTTTCCT chr15:82948393-82948493 + 82 1.76e-04 GCTTGGCATG GCTGTG GTGTGGCTCA chr1:152522167-152522267 - 58 1.76e-04 TCTGTGTATG GCTGTG TGTCTGTGGG chr5:14326091-14326191 + 66 1.76e-04 TTGAAAGTCT GCTGTG CATTTTATTT chr14:75492491-75492591 - 82 1.76e-04 GAGCGCTCTG GCTGTG GTGGCAGCAA chr2:6523288-6523388 - 25 1.76e-04 GGTTTGCAGT GCTGTG TGGGAATGCC chr10:94230586-94230686 - 73 1.76e-04 ACTCAAGTTG GCTGTG ATTCTCAAGG chr3:50306162-50306262 + 28 1.76e-04 ACGATCTTTT GCTGTG GAGTCTACTG chr12:65931788-65931888 - 37 1.76e-04 CAGAATAAGA GCTGTG TGACATCTAG chr3:105517114-105517214 + 81 1.76e-04 TTTTGCTAGT GCTGTG CATACATCTC chr7:114833343-114833443 - 8 1.76e-04 TCTTCCTTGT GCTGTG CCAGTGC chr8:87116281-87116381 + 69 1.76e-04 TGAAAGAGGC GCTGTG CAATTGTGCA chr9:69239120-69239220 + 63 1.76e-04 CCGTAAGCTT GCTGTG TTCATAGAGC chr9:71073839-71073939 - 37 1.76e-04 GTGACAGAGT GCTGTG GTCTGTGACA chr3:117796951-117797051 + 23 1.76e-04 AATTATACAA GCTGTG ATCATTTCCC chr8:124349604-124349704 + 46 1.76e-04 CTCACGTGGG GCTGTG TCTTCTATAA chr18:41678433-41678533 + 31 1.76e-04 ATCCAACAGA GCTGTG CTTAGCAACC chr17:70595169-70595269 - 51 1.76e-04 ACTGTGTATT GCTGTG AGCAGTAATC chr5:118079260-118079360 - 3 1.76e-04 CCGCCTGCCT GCTGTG CA chr8:79140931-79141031 - 65 1.76e-04 GACAGCGGCA GCTGTG AGCTGCAGAT chr18:11954340-11954440 - 59 1.76e-04 CTGTGGCACT GCTGTG AACTCACATG chr10:17403197-17403297 - 82 1.76e-04 ACAGAGCATT GCTGTG ATGGACTGCA chr15:31305133-31305233 + 45 1.76e-04 GCAGAGTCAG GCTGTG CTGCCGCATG chr3:36754537-36754637 - 26 1.76e-04 GGACACTGTT GCTGTG GTAACAGTAG chr9:29652203-29652303 + 72 1.76e-04 TACTCCTGAT GCTGTG ACTAGATTAA chr12:77466100-77466200 + 45 1.76e-04 TAAATTCATG GCTGTG GGTGGCAGAG chr18:75257653-75257753 + 29 1.76e-04 GTGCTGTGTG GCTGTG GCaagtgtgc chr6:145359831-145359931 + 68 1.76e-04 TAAGCTATCT GCTGTG AACCTCTGCA chr9:94060043-94060143 + 40 1.76e-04 CATCCCTGCT GCTGTG TGGGATTTTA chr14:107136716-10713681 - 64 1.76e-04 TCGATGGCTG GCTGTG TATTTGTCAG chr13:60035584-60035684 + 60 1.76e-04 AAAAACCATG GCTGTG TCAGTATTTA chr14:49722714-49722814 + 81 1.76e-04 ACGATGGAGA GCTGTG AGCAGAGATT chr18:75500835-75500935 - 57 1.76e-04 CAAGCCCAAG GCTGTG TATCCCCAGC chr14:7931627-7931727 - 26 1.76e-04 TCTCAGACAG GCTGTG AGCCTGCTCA chr2:108813030-108813130 - 38 1.76e-04 TGCACTGCAA GCTGTG GTTGCTCTAA chr12:50066702-50066802 + 74 1.76e-04 CATAAGGAAA GCTGTG TTTGGTGGGG chr6:111172944-111173044 - 30 1.76e-04 TGGGTCCAGA GCTGTG TATGAGCATA chr6:5442658-5442758 + 12 3.51e-04 AGAGTGAGAC GCTGAG TCGCTGAGTC chr12:32138320-32138420 + 5 3.51e-04 TGTT GCTGAG CAGGGCTCTG chr15:19273483-19273583 - 27 3.51e-04 TACGAGATTA GCTGAG ACAAATGACA chr18:24731016-24731116 + 62 3.51e-04 TCCGTGTTGG GCTGAG TTGGAGCAGA chr7:132005957-132006057 - 68 3.51e-04 GTTTGTCTGA GCTGAG CTTCATTTAG chr16:34209065-34209165 - 52 3.51e-04 ACTTAGTAGT GCTGAG CTCCTGTCTG chr10:13596021-13596121 - 28 3.51e-04 GAGCATCCTA GCTGAG CTGGCCTAAC chr6:47320043-47320143 - 37 3.51e-04 AAGCTTCTGT GCTGAG CTCAGGAGTT chr2:5165493-5165593 + 73 3.51e-04 ATATGCATGG GCTGAG CTGCCATGGA chr3:17853079-17853179 - 76 3.51e-04 ATCTCTGGAA GCTGAG AAACATGAGA chr9:43982434-43982534 - 52 3.51e-04 GAGTGGGAGA GCTGAG TCTGCTTCCT chr16:64265266-64265366 + 41 3.51e-04 aaagccatgt gctgag cgccagCCTT chr16:76928901-76929001 - 2 3.51e-04 TCAACCCTGA GCTGAG C chr17:47140924-47141024 + 33 3.51e-04 CTATGCGATG GCTGAG AGGCGGTGCA chr15:41311901-41312001 + 10 3.51e-04 GGAGGCTCG GCTGAG TCACAGGAAG chr11:23976456-23976556 - 37 3.51e-04 GGAACAATTT GCTGAG TGGCCCGGCA chr10:46738184-46738284 - 50 3.51e-04 AGAATTTAAA GCTGAG TTGAGTAGGC chr7:68829775-68829875 + 66 3.51e-04 GGGCTTCTTT GCTGAG CAGCGCCACC chr6:95979857-95979957 + 61 3.51e-04 ACCAACTGGG GCTGAG GCCAAAATTC chr5:9068831-9068931 + 55 3.51e-04 CCTGGTAGTT GCTGAG CTTGTGAGTC chr2:168128391-168128491 + 51 3.51e-04 TACTCCTTCC GCTGAG ATGGTTTCTA chr12:63382341-63382441 + 25 3.51e-04 cctccaaggt gctgag attacaagca chr10:5449946-5450046 - 20 3.51e-04 AGAGTAGGAA GCTGAG AGCTCGCACC chr8:102694601-102694701 - 46 3.51e-04 CTGGAAGGAT GCTGAG GCATCGGCAT chr19:23056817-23056917 - 57 3.51e-04 CTGCGCTGCG GCTGAG ATCATTCTGT chr14:121155179-12115527 + 18 3.51e-04 CAACAACAGA GCTGAG TTCTAGGCTA chr9:122605254-122605354 - 33 3.51e-04 GGGGACGGTG GCTGAG TCTGCTGAGG chr1:150540204-150540304 - 76 3.51e-04 GCGGGCTTCA GCTGAG CAGGCCAGAG chr2:142554780-142554880 + 39 3.51e-04 TTCTGTGAGG GCTGAG CTCCAACTTG chr17:62824013-62824113 + 78 3.51e-04 TGTTACTCCC GCTGAG CCTAGCGTGC chr7:57634948-57635048 + 64 3.51e-04 CCAGATGTCT GCTGAG TCTTTGTCCT chr6:31179802-31179902 + 48 3.51e-04 cctcctgagt gctgag attaaaggcg chr5:39328298-39328398 - 6 3.51e-04 GAGAGTTACA GCTGAG CCTAC chr12:80014276-80014376 - 54 3.51e-04 AGCCGGTTTT GCTGAG CTCATCAGAA chr19:33271735-33271835 + 81 3.51e-04 TGCAGTAGTG GCTGAG AAGCAAGGAA chr5:71127674-71127774 - 43 3.51e-04 AACTTGCCAG GCTGAG TCACTCAGCA chr13:91091566-91091666 - 62 3.51e-04 CTTCTGGATG GCTGAG ATAATTCAGG chr4:111364719-111364819 - 31 3.51e-04 GAGGGACAAG GCTGAG ACAATCACGC chr15:100910311-10091041 + 7 3.51e-04 CCCAGC GCTGAG TCACTGAGCC chr18:68009562-68009662 - 44 3.51e-04 CCAAACTGCT GCTGAG CATCCCATAA chr2:117888311-117888411 - 38 3.51e-04 GTGTGCCAAA GCTGAG TGGGCCCAGA chr4:98600411-98600511 + 21 3.51e-04 tgcagcaggc gctgag gcagctggtc chr9:17909354-17909454 + 9 3.51e-04 CTGTCTGG GCTGAG ATGTTAAAGA chr3:101638122-101638222 - 4 3.51e-04 AGCTATAATT GCTGAG GCT chr12:17051053-17051153 - 51 3.51e-04 ATCTTGATTA GCTGAG CTGTCCCCTC chr3:19410888-19410988 - 77 3.51e-04 AATTACATAA GCTGAG TAAGAATCAG chr13:93388421-93388521 + 31 3.51e-04 TAGGGAAATG GCTGAG TAGCAGAGTA chr19:14353131-14353231 + 79 3.51e-04 GAAAATCGCA GCTGAG GAGCTGCTGA chr13:44086652-44086752 - 53 3.51e-04 AGATGGGACT GCTGAG GGAGCTGGAA chr14:66238894-66238994 + 74 3.51e-04 tggagaagga gctgag aattctacat chr16:94924930-94925030 + 4 3.51e-04 ACA GCTGAG TCATGTGGGC chr14:111821985-11182208 + 51 3.51e-04 CCCTTTCAGA GCTGAG CTGAAGTGTT chr9:14242227-14242327 - 6 3.51e-04 ATCTGAAAGA GCTGAG AGCCT chr10:118703383-11870348 - 38 3.51e-04 TTCAAGAGCT GCTGAG AATGAGAACA chr2:108812324-108812424 - 79 3.51e-04 GTGTTGCTTG GCTGAG TAGGAGGTGC chr15:42429690-42429790 + 82 3.51e-04 AGCTGGGTTT GCTGAG TGCCAGTGGA chr5:49458204-49458304 + 75 3.51e-04 GTAGAAAAGA GCTGAG AGCTTTTGAA chr14:100970908-10097100 + 65 3.51e-04 CTGTCTCAAG GCTGAG TCCCAGCCAA chr17:84100635-84100735 + 40 3.51e-04 ACGAAGTCTG GCTGAG ACCCACACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGWG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:87955078-87955178 0.00018 25_[+8]_69 chr6:101226506-101226606 0.00018 54_[-8]_40 chr5:41076356-41076456 0.00018 25_[-8]_69 chr1:106069517-106069617 0.00018 4_[-8]_90 chr13:5398967-5399067 0.00018 57_[-8]_37 chr1:22748555-22748655 0.00018 59_[-8]_35 chrX:140871130-140871230 0.00018 47_[+8]_47 chr11:94881155-94881255 0.00018 30_[-8]_64 chr4:50507443-50507543 0.00018 16_[+8]_78 chr5:36719076-36719176 0.00018 64_[-8]_30 chr5:49370661-49370761 0.00018 79_[-8]_15 chr5:71842203-71842303 0.00018 27_[-8]_67 chr17:94226093-94226193 0.00018 73_[-8]_21 chr2:99170472-99170572 0.00018 31_[+8]_63 chr1:83582969-83583069 0.00018 78_[+8]_16 chr3:102691722-102691822 0.00018 51_[-8]_43 chr10:96697660-96697760 0.00018 60_[-8]_34 chr18:82765206-82765306 0.00018 5_[+8]_89 chr1:55454016-55454116 0.00018 56_[+8]_38 chr2:59533454-59533554 0.00018 73_[-8]_21 chrX:132915560-132915660 0.00018 11_[-8]_83 chr6:148553567-148553667 0.00018 59_[+8]_35 chr9:70232416-70232516 0.00018 19_[-8]_75 chr10:95033461-95033561 0.00018 66_[-8]_28 chr2:18952349-18952449 0.00018 40_[-8]_54 chr10:126814905-12681500 0.00018 66_[+8]_28 chr16:70654374-70654474 0.00018 23_[-8]_71 chr6:98981201-98981301 0.00018 27_[-8]_67 chr15:82948393-82948493 0.00018 81_[+8]_13 chr1:152522167-152522267 0.00018 57_[-8]_37 chr5:14326091-14326191 0.00018 65_[+8]_29 chr14:75492491-75492591 0.00018 81_[-8]_13 chr2:6523288-6523388 0.00018 24_[-8]_70 chr10:94230586-94230686 0.00018 72_[-8]_22 chr3:50306162-50306262 0.00018 27_[+8]_67 chr12:65931788-65931888 0.00018 36_[-8]_58 chr3:105517114-105517214 0.00018 80_[+8]_14 chr7:114833343-114833443 0.00018 7_[-8]_87 chr8:87116281-87116381 0.00018 68_[+8]_26 chr9:69239120-69239220 0.00018 62_[+8]_32 chr9:71073839-71073939 0.00018 36_[-8]_58 chr3:117796951-117797051 0.00018 22_[+8]_72 chr8:124349604-124349704 0.00018 45_[+8]_49 chr18:41678433-41678533 0.00018 30_[+8]_64 chr17:70595169-70595269 0.00018 50_[-8]_44 chr5:118079260-118079360 0.00018 2_[-8]_92 chr8:79140931-79141031 0.00018 64_[-8]_30 chr18:11954340-11954440 0.00018 58_[-8]_36 chr10:17403197-17403297 0.00018 81_[-8]_13 chr15:31305133-31305233 0.00018 44_[+8]_50 chr3:36754537-36754637 0.00018 25_[-8]_69 chr9:29652203-29652303 0.00018 71_[+8]_23 chr12:77466100-77466200 0.00018 44_[+8]_50 chr18:75257653-75257753 0.00018 28_[+8]_66 chr6:145359831-145359931 0.00018 67_[+8]_27 chr9:94060043-94060143 0.00018 39_[+8]_55 chr14:107136716-10713681 0.00018 63_[-8]_31 chr13:60035584-60035684 0.00018 59_[+8]_35 chr14:49722714-49722814 0.00018 80_[+8]_14 chr18:75500835-75500935 0.00018 56_[-8]_38 chr14:7931627-7931727 0.00018 25_[-8]_69 chr2:108813030-108813130 0.00018 37_[-8]_57 chr12:50066702-50066802 0.00018 73_[+8]_21 chr6:111172944-111173044 0.00018 29_[-8]_65 chr6:5442658-5442758 0.00035 11_[+8]_83 chr12:32138320-32138420 0.00035 4_[+8]_90 chr15:19273483-19273583 0.00035 26_[-8]_68 chr18:24731016-24731116 0.00035 61_[+8]_33 chr7:132005957-132006057 0.00035 67_[-8]_27 chr16:34209065-34209165 0.00035 51_[-8]_43 chr10:13596021-13596121 0.00035 27_[-8]_67 chr6:47320043-47320143 0.00035 36_[-8]_58 chr2:5165493-5165593 0.00035 72_[+8]_22 chr3:17853079-17853179 0.00035 75_[-8]_19 chr9:43982434-43982534 0.00035 51_[-8]_43 chr16:64265266-64265366 0.00035 40_[+8]_54 chr16:76928901-76929001 0.00035 1_[-8]_93 chr17:47140924-47141024 0.00035 32_[+8]_62 chr15:41311901-41312001 0.00035 9_[+8]_85 chr11:23976456-23976556 0.00035 36_[-8]_58 chr10:46738184-46738284 0.00035 49_[-8]_45 chr7:68829775-68829875 0.00035 65_[+8]_29 chr6:95979857-95979957 0.00035 60_[+8]_34 chr5:9068831-9068931 0.00035 54_[+8]_40 chr2:168128391-168128491 0.00035 50_[+8]_44 chr12:63382341-63382441 0.00035 24_[+8]_70 chr10:5449946-5450046 0.00035 19_[-8]_75 chr8:102694601-102694701 0.00035 45_[-8]_49 chr19:23056817-23056917 0.00035 56_[-8]_38 chr14:121155179-12115527 0.00035 17_[+8]_77 chr9:122605254-122605354 0.00035 32_[-8]_62 chr1:150540204-150540304 0.00035 75_[-8]_19 chr2:142554780-142554880 0.00035 38_[+8]_56 chr17:62824013-62824113 0.00035 77_[+8]_17 chr7:57634948-57635048 0.00035 63_[+8]_31 chr6:31179802-31179902 0.00035 47_[+8]_47 chr5:39328298-39328398 0.00035 5_[-8]_89 chr12:80014276-80014376 0.00035 53_[-8]_41 chr19:33271735-33271835 0.00035 80_[+8]_14 chr5:71127674-71127774 0.00035 42_[-8]_52 chr13:91091566-91091666 0.00035 61_[-8]_33 chr4:111364719-111364819 0.00035 30_[-8]_64 chr15:100910311-10091041 0.00035 6_[+8]_88 chr18:68009562-68009662 0.00035 43_[-8]_51 chr2:117888311-117888411 0.00035 37_[-8]_57 chr4:98600411-98600511 0.00035 20_[+8]_74 chr9:17909354-17909454 0.00035 8_[+8]_86 chr3:101638122-101638222 0.00035 3_[-8]_91 chr12:17051053-17051153 0.00035 50_[-8]_44 chr3:19410888-19410988 0.00035 76_[-8]_18 chr13:93388421-93388521 0.00035 30_[+8]_64 chr19:14353131-14353231 0.00035 78_[+8]_16 chr13:44086652-44086752 0.00035 52_[-8]_42 chr14:66238894-66238994 0.00035 73_[+8]_21 chr16:94924930-94925030 0.00035 3_[+8]_91 chr14:111821985-11182208 0.00035 50_[+8]_44 chr9:14242227-14242327 0.00035 5_[-8]_89 chr10:118703383-11870348 0.00035 37_[-8]_57 chr2:108812324-108812424 0.00035 78_[-8]_16 chr15:42429690-42429790 0.00035 81_[+8]_13 chr5:49458204-49458304 0.00035 74_[+8]_20 chr14:100970908-10097100 0.00035 64_[+8]_30 chr17:84100635-84100735 0.00035 39_[+8]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGWG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGWG width=6 seqs=123 chr11:87955078-87955178 ( 26) GCTGTG 1 chr6:101226506-101226606 ( 55) GCTGTG 1 chr5:41076356-41076456 ( 26) GCTGTG 1 chr1:106069517-106069617 ( 5) GCTGTG 1 chr13:5398967-5399067 ( 58) GCTGTG 1 chr1:22748555-22748655 ( 60) GCTGTG 1 chrX:140871130-140871230 ( 48) GCTGTG 1 chr11:94881155-94881255 ( 31) GCTGTG 1 chr4:50507443-50507543 ( 17) GCTGTG 1 chr5:36719076-36719176 ( 65) GCTGTG 1 chr5:49370661-49370761 ( 80) GCTGTG 1 chr5:71842203-71842303 ( 28) GCTGTG 1 chr17:94226093-94226193 ( 74) GCTGTG 1 chr2:99170472-99170572 ( 32) GCTGTG 1 chr1:83582969-83583069 ( 79) GCTGTG 1 chr3:102691722-102691822 ( 52) GCTGTG 1 chr10:96697660-96697760 ( 61) GCTGTG 1 chr18:82765206-82765306 ( 6) GCTGTG 1 chr1:55454016-55454116 ( 57) GCTGTG 1 chr2:59533454-59533554 ( 74) GCTGTG 1 chrX:132915560-132915660 ( 12) GCTGTG 1 chr6:148553567-148553667 ( 60) GCTGTG 1 chr9:70232416-70232516 ( 20) GCTGTG 1 chr10:95033461-95033561 ( 67) GCTGTG 1 chr2:18952349-18952449 ( 41) GCTGTG 1 chr10:126814905-12681500 ( 67) GCTGTG 1 chr16:70654374-70654474 ( 24) GCTGTG 1 chr6:98981201-98981301 ( 28) GCTGTG 1 chr15:82948393-82948493 ( 82) GCTGTG 1 chr1:152522167-152522267 ( 58) GCTGTG 1 chr5:14326091-14326191 ( 66) GCTGTG 1 chr14:75492491-75492591 ( 82) GCTGTG 1 chr2:6523288-6523388 ( 25) GCTGTG 1 chr10:94230586-94230686 ( 73) GCTGTG 1 chr3:50306162-50306262 ( 28) GCTGTG 1 chr12:65931788-65931888 ( 37) GCTGTG 1 chr3:105517114-105517214 ( 81) GCTGTG 1 chr7:114833343-114833443 ( 8) GCTGTG 1 chr8:87116281-87116381 ( 69) GCTGTG 1 chr9:69239120-69239220 ( 63) GCTGTG 1 chr9:71073839-71073939 ( 37) GCTGTG 1 chr3:117796951-117797051 ( 23) GCTGTG 1 chr8:124349604-124349704 ( 46) GCTGTG 1 chr18:41678433-41678533 ( 31) GCTGTG 1 chr17:70595169-70595269 ( 51) GCTGTG 1 chr5:118079260-118079360 ( 3) GCTGTG 1 chr8:79140931-79141031 ( 65) GCTGTG 1 chr18:11954340-11954440 ( 59) GCTGTG 1 chr10:17403197-17403297 ( 82) GCTGTG 1 chr15:31305133-31305233 ( 45) GCTGTG 1 chr3:36754537-36754637 ( 26) GCTGTG 1 chr9:29652203-29652303 ( 72) GCTGTG 1 chr12:77466100-77466200 ( 45) GCTGTG 1 chr18:75257653-75257753 ( 29) GCTGTG 1 chr6:145359831-145359931 ( 68) GCTGTG 1 chr9:94060043-94060143 ( 40) GCTGTG 1 chr14:107136716-10713681 ( 64) GCTGTG 1 chr13:60035584-60035684 ( 60) GCTGTG 1 chr14:49722714-49722814 ( 81) GCTGTG 1 chr18:75500835-75500935 ( 57) GCTGTG 1 chr14:7931627-7931727 ( 26) GCTGTG 1 chr2:108813030-108813130 ( 38) GCTGTG 1 chr12:50066702-50066802 ( 74) GCTGTG 1 chr6:111172944-111173044 ( 30) GCTGTG 1 chr6:5442658-5442758 ( 12) GCTGAG 1 chr12:32138320-32138420 ( 5) GCTGAG 1 chr15:19273483-19273583 ( 27) GCTGAG 1 chr18:24731016-24731116 ( 62) GCTGAG 1 chr7:132005957-132006057 ( 68) GCTGAG 1 chr16:34209065-34209165 ( 52) GCTGAG 1 chr10:13596021-13596121 ( 28) GCTGAG 1 chr6:47320043-47320143 ( 37) GCTGAG 1 chr2:5165493-5165593 ( 73) GCTGAG 1 chr3:17853079-17853179 ( 76) GCTGAG 1 chr9:43982434-43982534 ( 52) GCTGAG 1 chr16:64265266-64265366 ( 41) GCTGAG 1 chr16:76928901-76929001 ( 2) GCTGAG 1 chr17:47140924-47141024 ( 33) GCTGAG 1 chr15:41311901-41312001 ( 10) GCTGAG 1 chr11:23976456-23976556 ( 37) GCTGAG 1 chr10:46738184-46738284 ( 50) GCTGAG 1 chr7:68829775-68829875 ( 66) GCTGAG 1 chr6:95979857-95979957 ( 61) GCTGAG 1 chr5:9068831-9068931 ( 55) GCTGAG 1 chr2:168128391-168128491 ( 51) GCTGAG 1 chr12:63382341-63382441 ( 25) GCTGAG 1 chr10:5449946-5450046 ( 20) GCTGAG 1 chr8:102694601-102694701 ( 46) GCTGAG 1 chr19:23056817-23056917 ( 57) GCTGAG 1 chr14:121155179-12115527 ( 18) GCTGAG 1 chr9:122605254-122605354 ( 33) GCTGAG 1 chr1:150540204-150540304 ( 76) GCTGAG 1 chr2:142554780-142554880 ( 39) GCTGAG 1 chr17:62824013-62824113 ( 78) GCTGAG 1 chr7:57634948-57635048 ( 64) GCTGAG 1 chr6:31179802-31179902 ( 48) GCTGAG 1 chr5:39328298-39328398 ( 6) GCTGAG 1 chr12:80014276-80014376 ( 54) GCTGAG 1 chr19:33271735-33271835 ( 81) GCTGAG 1 chr5:71127674-71127774 ( 43) GCTGAG 1 chr13:91091566-91091666 ( 62) GCTGAG 1 chr4:111364719-111364819 ( 31) GCTGAG 1 chr15:100910311-10091041 ( 7) GCTGAG 1 chr18:68009562-68009662 ( 44) GCTGAG 1 chr2:117888311-117888411 ( 38) GCTGAG 1 chr4:98600411-98600511 ( 21) GCTGAG 1 chr9:17909354-17909454 ( 9) GCTGAG 1 chr3:101638122-101638222 ( 4) GCTGAG 1 chr12:17051053-17051153 ( 51) GCTGAG 1 chr3:19410888-19410988 ( 77) GCTGAG 1 chr13:93388421-93388521 ( 31) GCTGAG 1 chr19:14353131-14353231 ( 79) GCTGAG 1 chr13:44086652-44086752 ( 53) GCTGAG 1 chr14:66238894-66238994 ( 74) GCTGAG 1 chr16:94924930-94925030 ( 4) GCTGAG 1 chr14:111821985-11182208 ( 51) GCTGAG 1 chr9:14242227-14242327 ( 6) GCTGAG 1 chr10:118703383-11870348 ( 38) GCTGAG 1 chr2:108812324-108812424 ( 79) GCTGAG 1 chr15:42429690-42429790 ( 82) GCTGAG 1 chr5:49458204-49458304 ( 75) GCTGAG 1 chr14:100970908-10097100 ( 65) GCTGAG 1 chr17:84100635-84100735 ( 40) GCTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGWG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 6 n= 57000 bayes= 10.1478 E= 1.4e+002 -1359 -1359 221 -1359 -1359 221 -1359 -1359 -1359 -1359 -1359 182 -1359 -1359 221 -1359 76 -1359 -1359 87 -1359 -1359 221 -1359 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGWG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 6 nsites= 123 E= 1.4e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.479675 0.000000 0.000000 0.520325 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGWG MEME-8 regular expression -------------------------------------------------------------------------------- GCTG[TA]G -------------------------------------------------------------------------------- Time 3322.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCYTCC MEME-9 width = 8 sites = 21 llr = 224 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCYTCC MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a4:aa probability G ::a::::: matrix T :a::6a:: bits 2.2 * ** * 2.0 * ** ** 1.8 **** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (15.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCTTCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYTCC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr15:32129032-32129132 + 4 1.90e-05 tca ctgcctcc agctccaccc chr6:96044339-96044439 + 6 1.90e-05 CTTCA CTGCCTCC CTCCGTAATT chr18:24731016-24731116 + 10 1.90e-05 TTTCTCTTA CTGCCTCC ATTTGTAGCT chr4:139258522-139258622 - 26 1.90e-05 AGCTGTCACT CTGCTTCC AAGCTCTACC chr16:50009538-50009638 + 56 1.90e-05 TCACAGATGG CTGCTTCC TGTGCCACCC chr8:10547634-10547734 + 23 1.90e-05 AAGGATGATA CTGCTTCC TATACTGTAA chr9:43982434-43982534 - 43 1.90e-05 AGAGCTGAGT CTGCTTCC TACCAATGGC chr4:152568947-152569047 + 26 1.90e-05 GCTTCCTCTT CTGCTTCC TTGAGCTCCT chr14:19946168-19946268 + 10 1.90e-05 CATtttctc ctgcctcc caccagctct chr3:151913852-151913952 - 4 1.90e-05 AAGTACTTGG CTGCCTCC CAT chr3:50306162-50306262 + 9 1.90e-05 CGATCAAC CTGCTTCC AACGATCTTT chr1:121096597-121096697 - 43 1.90e-05 AACAGTCTGG CTGCCTCC TCCCCTCCTC chr6:84383062-84383162 - 76 1.90e-05 TCACTTCTCT CTGCTTCC TGACTTCCTG chr1:119886361-119886461 + 68 1.90e-05 CAATCGCTGG CTGCTTCC ATTTTTACCC chr5:42918582-42918682 - 32 1.90e-05 GGTAGACACT CTGCCTCC TATCCCTAAA chr14:64591606-64591706 - 77 1.90e-05 GGGCTACAGC CTGCTTCC TGGGGGTGGG chr4:68690675-68690775 + 13 1.90e-05 ttctacttgc ctgcttcc atgggggtta chr4:98600411-98600511 - 53 1.90e-05 TCACCAGTGT CTGCTTCC TGACTGTGGG chr2:149493536-149493636 + 18 1.90e-05 AGCTGGTAAA CTGCCTCC CACAGTTTGG chr2:59424657-59424757 + 51 1.90e-05 AGACGAAGCC CTGCCTCC TCGGGTATTT chr1:105947027-105947127 - 60 3.79e-05 TGCTGCAGTT CTGCTTGC GCCAGATCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYTCC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:32129032-32129132 1.9e-05 3_[+9]_89 chr6:96044339-96044439 1.9e-05 5_[+9]_87 chr18:24731016-24731116 1.9e-05 9_[+9]_83 chr4:139258522-139258622 1.9e-05 25_[-9]_67 chr16:50009538-50009638 1.9e-05 55_[+9]_37 chr8:10547634-10547734 1.9e-05 22_[+9]_70 chr9:43982434-43982534 1.9e-05 42_[-9]_50 chr4:152568947-152569047 1.9e-05 25_[+9]_67 chr14:19946168-19946268 1.9e-05 9_[+9]_83 chr3:151913852-151913952 1.9e-05 3_[-9]_89 chr3:50306162-50306262 1.9e-05 8_[+9]_84 chr1:121096597-121096697 1.9e-05 42_[-9]_50 chr6:84383062-84383162 1.9e-05 75_[-9]_17 chr1:119886361-119886461 1.9e-05 67_[+9]_25 chr5:42918582-42918682 1.9e-05 31_[-9]_61 chr14:64591606-64591706 1.9e-05 76_[-9]_16 chr4:68690675-68690775 1.9e-05 12_[+9]_80 chr4:98600411-98600511 1.9e-05 52_[-9]_40 chr2:149493536-149493636 1.9e-05 17_[+9]_75 chr2:59424657-59424757 1.9e-05 50_[+9]_42 chr1:105947027-105947127 3.8e-05 59_[-9]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYTCC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCYTCC width=8 seqs=21 chr15:32129032-32129132 ( 4) CTGCCTCC 1 chr6:96044339-96044439 ( 6) CTGCCTCC 1 chr18:24731016-24731116 ( 10) CTGCCTCC 1 chr4:139258522-139258622 ( 26) CTGCTTCC 1 chr16:50009538-50009638 ( 56) CTGCTTCC 1 chr8:10547634-10547734 ( 23) CTGCTTCC 1 chr9:43982434-43982534 ( 43) CTGCTTCC 1 chr4:152568947-152569047 ( 26) CTGCTTCC 1 chr14:19946168-19946268 ( 10) CTGCCTCC 1 chr3:151913852-151913952 ( 4) CTGCCTCC 1 chr3:50306162-50306262 ( 9) CTGCTTCC 1 chr1:121096597-121096697 ( 43) CTGCCTCC 1 chr6:84383062-84383162 ( 76) CTGCTTCC 1 chr1:119886361-119886461 ( 68) CTGCTTCC 1 chr5:42918582-42918682 ( 32) CTGCCTCC 1 chr14:64591606-64591706 ( 77) CTGCTTCC 1 chr4:68690675-68690775 ( 13) CTGCTTCC 1 chr4:98600411-98600511 ( 53) CTGCTTCC 1 chr2:149493536-149493636 ( 18) CTGCCTCC 1 chr2:59424657-59424757 ( 51) CTGCCTCC 1 chr1:105947027-105947127 ( 60) CTGCTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYTCC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 12.3617 E= 1.3e+004 -1104 221 -1104 -1104 -1104 -1104 -1104 182 -1104 -1104 221 -1104 -1104 221 -1104 -1104 -1104 99 -1104 101 -1104 -1104 -1104 182 -1104 214 -218 -1104 -1104 221 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYTCC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.3e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.952381 0.047619 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCYTCC MEME-9 regular expression -------------------------------------------------------------------------------- CTGC[TC]TCC -------------------------------------------------------------------------------- Time 3691.55 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAGASASRC MEME-10 width = 11 sites = 28 llr = 298 E-value = 2.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAGASASRC MEME-10 Description -------------------------------------------------------------------------------- Simplified A :a:9:6:a:63 pos.-specific C a:a1::6:4:6 probability G ::::a14:431 matrix T :::::3::21: bits 2.2 * * 2.0 * * * 1.8 *** * * 1.5 ***** * Relative 1.3 ***** ** Entropy 1.1 ***** ** (15.3 bits) 0.9 ***** ** * 0.7 ***** *** * 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CACAGACAGAC consensus TG CGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGASASRC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr9:29652203-29652303 + 7 1.88e-07 GCCAGA CACAGACAGAC GTGCTGATCC chr1:18551219-18551319 - 60 1.88e-07 TCACCCACTT CACAGACAGAC CTAAAAACAA chr14:93274414-93274514 + 78 5.18e-07 AATAAACTCC CACAGACAGGC tgttgtgcca chr2:72662339-72662439 - 41 8.48e-07 AAGCCCTGCC CACAGAGAGAC GTCTACCCGG chr13:12083699-12083799 + 21 8.48e-07 AGAAAGAACT CACAGAGAGAC TAACAAGCCC chr12:5173754-5173854 + 73 1.70e-06 GAAAGGCAGT CACAGTCACAC AAGAGACCTT chr19:26795529-26795629 + 24 2.19e-06 CAGCTCTGCC CACAGACAGAA TTTTCTATTG chr1:152522167-152522267 + 68 2.72e-06 cacagccata cacagacacaa agacacatac chr9:104826430-104826530 - 72 3.38e-06 CAGCTAGGAC CACAGGCACAC TCCACCATGC chr16:40290037-40290137 - 76 3.76e-06 GACTGGAAAC CACAGTGACAC CATTTCCTCC chr6:71777940-71778040 + 23 4.92e-06 ATACACACCC CACAGACACGA GCATACAGCA chr18:31183780-31183880 - 24 4.92e-06 TACAGCCTAT CACAGGCAGGC AGAAATAAGT chr5:55457560-55457660 - 57 6.22e-06 ATTCACAGTG CACAGAGAGTC TATATATGTC chr2:142554780-142554880 + 56 6.22e-06 TCCAACTTGG CACAGACAGAG AGCCATGGTG chr11:23976456-23976556 - 3 6.60e-06 ACCATCATGT CACAGAGACTC GG chr1:55454016-55454116 - 20 7.47e-06 TCTCATTGCC CACAGTCATAC TCCTCCTACC chr13:41677214-41677314 - 67 8.01e-06 TCATCTGTAT CACAGTCACAA CAATGACGTG chr13:36492349-36492449 + 14 8.01e-06 CTGTTTAGAG CACAGGGAGGC TGCAGCAGCT chr4:153208179-153208279 - 78 8.45e-06 TCTGCTGACT CACAGTCAGTC TGATTTTTAC chr3:101638122-101638222 + 21 1.19e-05 ATTATAGCTA CACAGGCACAA TTACAAGTCC chr7:80066941-80067041 - 67 1.49e-05 TATAACTTCT CACAGAGACGG CGCCATGGCT chr5:50202619-50202719 + 6 1.49e-05 TGAAG CACAGAGATAA GGAGAAGGGA chr7:122477771-122477871 - 25 1.59e-05 TCAATCAGCC CACAGTGATGC AGAAGGCAGC chr4:139258522-139258622 - 56 1.94e-05 TTCTTCTTTC CACAGACAGTG CCCACACCTC chr1:20039368-20039468 + 3 1.94e-05 TA CACAGAGATGA GAGGAGGTGT chr5:25830857-25830957 + 17 2.24e-05 cacacacaca cacacacacac actctctctc chr5:129137358-129137458 - 4 2.54e-05 TGAGGCTGCT CACCGTCACGC TTT chr17:59076284-59076384 - 40 2.94e-05 CCTATCGACT CACCGAGATAC TAGCTTCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGASASRC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:29652203-29652303 1.9e-07 6_[+10]_83 chr1:18551219-18551319 1.9e-07 59_[-10]_30 chr14:93274414-93274514 5.2e-07 77_[+10]_12 chr2:72662339-72662439 8.5e-07 40_[-10]_49 chr13:12083699-12083799 8.5e-07 20_[+10]_69 chr12:5173754-5173854 1.7e-06 72_[+10]_17 chr19:26795529-26795629 2.2e-06 23_[+10]_66 chr1:152522167-152522267 2.7e-06 67_[+10]_22 chr9:104826430-104826530 3.4e-06 71_[-10]_18 chr16:40290037-40290137 3.8e-06 75_[-10]_14 chr6:71777940-71778040 4.9e-06 22_[+10]_67 chr18:31183780-31183880 4.9e-06 23_[-10]_66 chr5:55457560-55457660 6.2e-06 56_[-10]_33 chr2:142554780-142554880 6.2e-06 55_[+10]_34 chr11:23976456-23976556 6.6e-06 2_[-10]_87 chr1:55454016-55454116 7.5e-06 19_[-10]_70 chr13:41677214-41677314 8e-06 66_[-10]_23 chr13:36492349-36492449 8e-06 13_[+10]_76 chr4:153208179-153208279 8.5e-06 77_[-10]_12 chr3:101638122-101638222 1.2e-05 20_[+10]_69 chr7:80066941-80067041 1.5e-05 66_[-10]_23 chr5:50202619-50202719 1.5e-05 5_[+10]_84 chr7:122477771-122477871 1.6e-05 24_[-10]_65 chr4:139258522-139258622 1.9e-05 55_[-10]_34 chr1:20039368-20039468 1.9e-05 2_[+10]_87 chr5:25830857-25830957 2.2e-05 16_[+10]_73 chr5:129137358-129137458 2.5e-05 3_[-10]_86 chr17:59076284-59076384 2.9e-05 39_[-10]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGASASRC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAGASASRC width=11 seqs=28 chr9:29652203-29652303 ( 7) CACAGACAGAC 1 chr1:18551219-18551319 ( 60) CACAGACAGAC 1 chr14:93274414-93274514 ( 78) CACAGACAGGC 1 chr2:72662339-72662439 ( 41) CACAGAGAGAC 1 chr13:12083699-12083799 ( 21) CACAGAGAGAC 1 chr12:5173754-5173854 ( 73) CACAGTCACAC 1 chr19:26795529-26795629 ( 24) CACAGACAGAA 1 chr1:152522167-152522267 ( 68) CACAGACACAA 1 chr9:104826430-104826530 ( 72) CACAGGCACAC 1 chr16:40290037-40290137 ( 76) CACAGTGACAC 1 chr6:71777940-71778040 ( 23) CACAGACACGA 1 chr18:31183780-31183880 ( 24) CACAGGCAGGC 1 chr5:55457560-55457660 ( 57) CACAGAGAGTC 1 chr2:142554780-142554880 ( 56) CACAGACAGAG 1 chr11:23976456-23976556 ( 3) CACAGAGACTC 1 chr1:55454016-55454116 ( 20) CACAGTCATAC 1 chr13:41677214-41677314 ( 67) CACAGTCACAA 1 chr13:36492349-36492449 ( 14) CACAGGGAGGC 1 chr4:153208179-153208279 ( 78) CACAGTCAGTC 1 chr3:101638122-101638222 ( 21) CACAGGCACAA 1 chr7:80066941-80067041 ( 67) CACAGAGACGG 1 chr5:50202619-50202719 ( 6) CACAGAGATAA 1 chr7:122477771-122477871 ( 25) CACAGTGATGC 1 chr4:139258522-139258622 ( 56) CACAGACAGTG 1 chr1:20039368-20039468 ( 3) CACAGAGATGA 1 chr5:25830857-25830957 ( 17) CACACACACAC 1 chr5:129137358-129137458 ( 4) CACCGTCACGC 1 chr17:59076284-59076384 ( 40) CACCGAGATAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGASASRC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 12.1354 E= 2.6e+005 -1145 221 -1145 -1145 182 -1145 -1145 -1145 -1145 221 -1145 -1145 171 -160 -1145 -1145 -1145 -260 216 -1145 110 -1145 -60 -18 -1145 149 86 -1145 182 -1145 -1145 -1145 -1145 86 99 -67 101 -1145 40 -99 -18 157 -101 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGASASRC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 28 E= 2.6e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 0.035714 0.964286 0.000000 0.607143 0.000000 0.142857 0.250000 0.000000 0.607143 0.392857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.392857 0.428571 0.178571 0.571429 0.000000 0.285714 0.142857 0.250000 0.642857 0.107143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGASASRC MEME-10 regular expression -------------------------------------------------------------------------------- CACAG[AT][CG]A[GC][AG][CA] -------------------------------------------------------------------------------- Time 4058.70 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:90273171-90273271 5.85e-05 71_[+4(1.17e-06)]_18 chr17:84100635-84100735 1.61e-05 67_[-1(2.38e-06)]_12 chr6:111172944-111173044 4.30e-03 100 chr14:100970908-10097100 4.30e-02 100 chr2:94122102-94122202 1.57e-01 100 chr1:7543441-7543541 1.60e-01 100 chr12:5173754-5173854 2.19e-06 43_[-2(4.58e-05)]_18_\ [+10(1.70e-06)]_17 chrX:120696350-120696450 7.28e-01 100 chr5:49458204-49458304 4.48e-01 100 chr15:42429690-42429790 4.43e-04 66_[-2(1.16e-05)]_23 chr15:12630040-12630140 4.79e-02 100 chr2:108812324-108812424 3.84e-02 100 chr10:107202459-10720255 9.20e-01 100 chr1:151087807-151087907 8.63e-05 22_[-9(3.79e-05)]_34_[+4(2.29e-05)]_\ 13_[-10(4.67e-05)]_1 chr9:63124000-63124100 3.98e-05 6_[+1(1.79e-07)]_73 chr11:24749927-24750027 1.65e-01 100 chr2:136107452-136107552 5.51e-03 70_[+4(6.09e-06)]_19 chr12:59811809-59811909 4.19e-01 100 chr6:50054571-50054671 7.86e-04 41_[+1(5.03e-08)]_38 chr10:118703383-11870348 1.43e-01 100 chr3:50914808-50914908 1.66e-01 100 chr12:50066702-50066802 6.45e-03 75_[-4(6.03e-05)]_14 chr1:20039368-20039468 4.15e-05 2_[+10(1.94e-05)]_64_[-2(1.35e-06)]_\ 12 chr2:108813030-108813130 2.74e-09 6_[+5(3.50e-06)]_33_[+7(2.89e-09)]_\ 35 chr9:14242227-14242327 1.13e-02 61_[+2(2.85e-07)]_28 chr14:111821985-11182208 2.46e-01 100 chr8:35745111-35745211 2.65e-02 100 chr2:149877813-149877913 2.03e-04 73_[-1(4.94e-07)]_6 chr16:6907183-6907283 3.06e-02 100 chr8:55406877-55406977 8.10e-02 40_[+6(4.62e-07)]_46 chr4:52336286-52336386 3.24e-06 2_[+5(6.41e-06)]_16_[-2(9.77e-06)]_\ 26_[-7(1.46e-06)]_19 chr12:91929321-91929421 3.28e-01 100 chr9:95452898-95452998 3.11e-04 63_[+2(6.05e-05)]_26 chr1:27657968-27658068 1.64e-02 100 chr10:57183515-57183615 6.43e-04 42_[+5(1.88e-07)]_47 chr8:17001839-17001939 8.42e-01 100 chr10:70030207-70030307 5.25e-01 100 chr5:50795246-50795346 1.96e-02 40_[-10(8.41e-05)]_34_\ [-2(1.47e-05)]_4 chr14:7931627-7931727 2.32e-02 61_[+10(3.17e-05)]_28 chr3:109178621-109178721 5.13e-01 100 chr16:94924930-94925030 7.11e-02 100 chr18:75500835-75500935 3.32e-03 4_[-4(1.17e-06)]_85 chr14:49722714-49722814 1.95e-02 100 chr17:44650347-44650447 4.46e-01 100 chr3:136993359-136993459 3.68e-03 9_[+4(2.58e-06)]_80 chr4:69753025-69753125 9.97e-02 100 chr5:111761960-111762060 2.89e-01 100 chr6:66500146-66500246 6.55e-04 42_[+3(1.60e-07)]_28 chr14:66238894-66238994 6.98e-03 46_[-9(3.79e-05)]_46 chrX:67074684-67074784 9.21e-01 100 chr4:15111938-15112038 2.31e-01 100 chr11:20878557-20878657 7.65e-03 34_[-2(2.68e-05)]_55 chr7:133066844-133066944 1.69e-03 14_[+3(4.50e-08)]_56 chr4:55928533-55928633 3.69e-01 11_[+5(7.35e-05)]_78 chr15:67152646-67152746 5.62e-03 9_[+4(1.26e-05)]_80 chr2:93110873-93110973 6.83e-05 7_[-7(2.28e-07)]_78 chr18:31183780-31183880 1.62e-03 23_[-10(4.92e-06)]_66 chr13:76878950-76879050 3.38e-05 29_[-1(7.45e-07)]_9_[-2(7.82e-05)]_\ 30 chr9:29856660-29856760 8.39e-03 88_[-2(1.16e-05)]_1 chr13:44086652-44086752 2.72e-03 62_[+2(2.04e-05)]_27 chr2:31727547-31727647 6.70e-02 100 chr3:111868557-111868657 5.15e-03 100 chr2:102598162-102598262 2.51e-01 100 chr19:14353131-14353231 4.23e-04 5_[-4(1.72e-06)]_84 chr12:35407981-35408081 4.57e-01 100 chr10:9229042-9229142 4.01e-01 100 chr13:93388421-93388521 4.93e-04 67_[+3(7.76e-06)]_3 chr4:76038425-76038525 5.07e-09 2_[-3(1.03e-08)]_11_[-3(5.56e-06)]_\ 27 chr5:71039408-71039508 8.95e-01 100 chr3:154294046-154294146 1.45e-01 100 chr3:19410888-19410988 2.06e-01 100 chr15:64021193-64021293 7.62e-04 30_[-2(7.82e-05)]_12_[+1(1.19e-05)]_\ 26 chr19:20180756-20180856 5.04e-02 20_[-2(6.29e-06)]_69 chr2:59424657-59424757 3.26e-04 50_[+9(1.90e-05)]_23_[-6(2.11e-06)]_\ 5 chr3:134202673-134202773 6.10e-05 1_[-1(6.88e-06)]_33_[-1(3.04e-06)]_\ 24 chr9:28607863-28607963 1.71e-01 100 chr12:17051053-17051153 1.77e-01 100 chr2:149493536-149493636 1.10e-02 17_[+9(1.90e-05)]_75 chr1:188667550-188667650 4.51e-02 56_[+2(5.29e-05)]_33 chr2:102610456-102610556 6.48e-02 100 chr13:60035584-60035684 5.86e-03 100 chr9:70816885-70816985 8.37e-03 75_[-4(6.35e-05)]_14 chr12:94932441-94932541 1.97e-01 4_[+10(9.20e-05)]_85 chr6:37752953-37753053 5.61e-02 33_[-2(4.06e-05)]_56 chr14:107136716-10713681 6.53e-03 15_[+7(2.14e-06)]_70 chr2:136666891-136666991 4.70e-01 100 chr9:47354754-47354854 6.49e-01 100 chr3:101638122-101638222 3.25e-01 20_[+10(1.19e-05)]_69 chr8:64671348-64671448 8.64e-03 11_[-1(5.93e-05)]_68 chr15:50727786-50727886 9.58e-01 100 chr13:10725746-10725846 3.25e-06 1_[+5(1.56e-05)]_41_[+7(5.21e-06)]_\ 32 chr18:57789100-57789200 4.35e-01 100 chr8:91643657-91643757 2.02e-05 18_[+1(5.48e-06)]_32_[-2(3.71e-06)]_\ 18 chr14:84185059-84185159 7.61e-01 100 chr6:99353528-99353628 5.08e-01 100 chr14:48295616-48295716 6.10e-01 100 chr9:17909354-17909454 4.62e-02 100 chr2:149768460-149768560 7.82e-02 76_[+2(6.05e-05)]_13 chrX:94185089-94185189 2.81e-03 19_[+6(4.18e-07)]_67 chr15:94160711-94160811 7.32e-01 42_[-2(7.82e-05)]_47 chr12:24872677-24872777 1.99e-03 8_[-2(2.40e-05)]_81 chr2:44631106-44631206 1.60e-02 100 chr9:94060043-94060143 1.85e-01 100 chr3:118167510-118167610 7.22e-02 100 chr2:97586263-97586363 1.55e-02 51_[+4(1.03e-06)]_38 chrX:54257537-54257637 3.48e-03 48_[+7(6.72e-06)]_37 chr15:13655032-13655132 4.66e-01 100 chrX:165666816-165666916 3.24e-02 13_[+1(7.82e-05)]_66 chr3:117494067-117494167 6.37e-02 52_[-6(2.20e-05)]_34 chr6:71777940-71778040 1.03e-01 22_[+10(4.92e-06)]_67 chr3:133445527-133445627 8.22e-06 38_[+2(4.06e-05)]_11_[-4(3.11e-06)]_\ 29 chr1:184768846-184768946 1.10e-01 100 chr11:110430965-11043106 1.23e-02 65_[+2(7.54e-06)]_24 chr12:46360932-46361032 1.84e-02 23_[+6(8.47e-05)]_63 chr10:63710153-63710253 2.21e-06 43_[-1(1.31e-09)]_36 chrX:167172252-167172352 4.90e-02 100 chr7:75254887-75254987 6.45e-02 100 chr3:67976529-67976629 4.09e-01 100 chr1:155712016-155712116 4.92e-03 100 chr6:145359831-145359931 1.55e-01 100 chr13:106805172-10680527 9.29e-01 100 chr4:76926605-76926705 5.93e-01 100 chr15:11861192-11861292 5.76e-01 100 chrX:164183790-164183890 1.59e-01 9_[+6(1.47e-06)]_77 chr10:123418232-12341833 1.96e-03 14_[-3(2.04e-08)]_56 chr13:36893277-36893377 6.64e-02 100 chr8:72918420-72918520 6.11e-05 33_[+4(1.72e-06)]_13_[+2(7.82e-05)]_\ 32 chr4:98600411-98600511 1.64e-08 23_[-2(2.40e-05)]_3_[+4(6.68e-07)]_\ 4_[-9(1.90e-05)]_17_[+2(1.47e-05)]_12 chr8:28336943-28337043 2.76e-02 48_[+5(7.60e-06)]_41 chr17:9776235-9776335 1.17e-03 8_[-5(1.16e-05)]_17_[-3(8.83e-05)]_\ 34 chr13:56790644-56790744 6.00e-06 36_[-4(1.03e-06)]_53 chr16:73223697-73223797 4.97e-01 100 chr2:117888311-117888411 1.52e-02 26_[-5(3.15e-05)]_63 chr2:29526272-29526372 1.34e-04 12_[+1(7.13e-05)]_37_[-2(2.68e-05)]_\ 19 chrX:56756141-56756241 5.16e-01 100 chr4:68690675-68690775 8.91e-05 12_[+9(1.90e-05)]_32_[-2(1.16e-05)]_\ 37 chr5:74313504-74313604 1.62e-04 16_[-1(9.61e-06)]_14_[-2(2.68e-05)]_\ 38 chr1:18551219-18551319 5.54e-06 7_[+7(8.81e-07)]_37_[-10(1.88e-07)]_\ 30 chr13:10470035-10470135 2.21e-01 100 chr18:68009562-68009662 6.35e-03 70_[-4(1.91e-05)]_5_[-10(9.83e-05)]_\ 3 chr18:40413062-40413162 4.83e-01 100 chr10:33349840-33349940 5.62e-01 100 chr18:75257653-75257753 1.40e-03 100 chr7:93435067-93435167 3.81e-01 100 chr16:40290037-40290137 1.25e-04 15_[-2(6.82e-05)]_49_\ [-10(3.76e-06)]_14 chr4:52332777-52332877 2.37e-02 18_[+3(2.54e-05)]_52 chr12:77466100-77466200 1.36e-03 43_[+1(5.40e-05)]_36 chr16:75091936-75092036 1.22e-03 4_[-1(1.07e-05)]_75 chr17:65374475-65374575 2.71e-08 41_[-5(5.18e-07)]_1_[-5(2.52e-05)]_\ 3_[-1(7.82e-05)]_12 chr14:10039419-10039519 2.21e-01 100 chr4:114584571-114584671 5.53e-03 90_[-9(3.79e-05)]_2 chr13:103211977-10321207 5.29e-04 37_[+4(4.84e-06)]_52 chr4:10923090-10923190 8.69e-05 15_[+1(5.93e-05)]_1_[-2(1.74e-05)]_\ 7_[+1(5.93e-05)]_24 chr3:50987797-50987897 1.84e-05 27_[-1(6.98e-08)]_52 chr14:64591606-64591706 6.82e-11 12_[-2(2.04e-05)]_29_[-1(5.03e-08)]_\ 3_[-9(1.90e-05)]_16 chr1:184447030-184447130 4.51e-01 100 chr12:82807166-82807266 3.41e-01 6_[-2(6.29e-06)]_83 chr15:18432645-18432745 5.94e-01 100 chr9:29652203-29652303 4.84e-05 6_[+10(1.88e-07)]_16_[-2(6.29e-06)]_\ 56 chr2:38893814-38893914 2.81e-01 81_[-2(2.40e-05)]_8 chr13:107238944-10723904 2.55e-03 32_[+6(6.76e-08)]_54 chr3:112229450-112229550 9.42e-01 100 chr10:84412835-84412935 9.29e-03 23_[-6(3.07e-05)]_63 chr11:67103959-67104059 3.03e-01 100 chr3:36754537-36754637 3.32e-03 11_[-7(9.32e-05)]_[-7(6.63e-05)]_59 chr19:60310515-60310615 9.28e-05 69_[-1(2.69e-06)]_10 chr3:19423650-19423750 4.88e-02 83_[+2(1.47e-05)]_6 chr13:108899836-10889993 4.92e-01 100 chr15:100910311-10091041 1.61e-04 59_[-2(4.06e-05)]_30 chr6:31162850-31162950 1.66e-01 100 chr15:17880125-17880225 4.96e-04 64_[+5(6.61e-05)]_3_[-2(2.37e-06)]_\ 11 chr6:40070925-40071025 7.60e-05 12_[-2(9.73e-05)]_22_[-2(1.35e-06)]_\ 44 chr17:89081372-89081472 7.78e-03 39_[+1(2.74e-05)]_12_[-5(2.83e-05)]_\ 17 chr4:111364719-111364819 2.25e-06 42_[-1(1.23e-08)]_37 chr13:91091566-91091666 2.66e-01 100 chr5:71127674-71127774 1.12e-01 100 chr15:51815013-51815113 4.93e-02 82_[+4(1.60e-05)]_7 chr5:42918582-42918682 8.82e-05 31_[-9(1.90e-05)]_17_\ [+10(5.73e-05)]_33 chr15:31305133-31305233 1.35e-05 23_[+1(1.86e-06)]_56 chr10:17403197-17403297 1.85e-02 100 chr2:136783681-136783781 3.17e-01 100 chrX:116262632-116262732 6.01e-01 100 chr1:152466319-152466419 2.29e-03 69_[-3(3.86e-08)]_1 chr13:77396299-77396399 3.39e-01 100 chrX:89342886-89342986 4.74e-01 100 chr7:57471250-57471350 4.37e-04 23_[-1(9.74e-07)]_56 chr16:41276437-41276537 3.78e-04 13_[-3(2.80e-09)]_57 chr6:14979249-14979349 4.49e-01 100 chr15:4086885-4086985 3.50e-01 100 chr2:9646449-9646549 1.19e-02 61_[-1(6.14e-06)]_18 chr19:33271735-33271835 5.37e-03 40_[+3(8.10e-05)]_30 chr12:80014276-80014376 1.72e-01 100 chr2:78387960-78388060 1.42e-03 38_[+2(8.74e-05)]_51 chr18:11954340-11954440 5.49e-06 7_[-7(1.36e-05)]_4_[-2(1.16e-05)]_\ 63 chr8:79140931-79141031 3.08e-06 42_[-2(6.29e-06)]_12_[+2(8.74e-05)]_\ 24 chr13:12083699-12083799 1.43e-04 20_[+10(8.48e-07)]_6_[-1(5.93e-05)]_\ 42 chr5:118079260-118079360 1.08e-09 6_[-9(3.79e-05)]_9_[+3(2.40e-08)]_\ 24_[-7(5.22e-05)]_8 chr15:31090791-31090891 3.78e-01 100 chr13:42615808-42615908 6.62e-06 18_[-1(8.55e-05)]_7_[-10(5.12e-05)]_\ 43 chr14:97165828-97165928 4.05e-01 100 chr5:129137358-129137458 2.07e-04 3_[-10(2.54e-05)]_61_[+2(3.12e-05)]_\ 14 chr4:31176282-31176382 6.74e-02 14_[-9(3.79e-05)]_60_[+7(9.84e-05)]_\ 3 chr2:173427930-173428030 3.24e-07 46_[+1(5.03e-08)]_33 chr5:25830857-25830957 2.63e-12 6_[+10(2.24e-05)]_1_[+10(2.24e-05)]_\ 10_[-3(1.90e-13)]_[-3(3.09e-09)]_1 chr11:7234883-7234983 6.77e-03 29_[+7(4.91e-05)]_56 chr17:70595169-70595269 1.73e-05 74_[+7(1.19e-07)]_11 chr1:77447590-77447690 4.91e-01 100 chr14:48246071-48246171 3.00e-04 7_[+3(1.90e-05)]_20_[-2(2.04e-05)]_\ 32 chr10:98343811-98343911 9.98e-01 100 chr5:39328298-39328398 1.71e-01 100 chr9:40617206-40617306 2.69e-03 17_[-6(5.20e-05)]_69 chr2:75223665-75223765 2.30e-01 23_[+2(2.40e-05)]_66 chr9:23442146-23442246 6.03e-06 18_[+2(1.47e-05)]_37_[-7(3.90e-08)]_\ 19 chr18:41678433-41678533 1.68e-01 100 chr6:36776874-36776974 1.00e-01 100 chr2:75248202-75248302 4.79e-01 100 chr2:65337560-65337660 3.72e-02 100 chr8:124349604-124349704 1.11e-03 63_[+2(5.29e-05)]_26 chr17:15862270-15862370 2.55e-02 82_[-2(7.82e-05)]_7 chr6:31179802-31179902 1.44e-08 22_[-1(1.23e-08)]_57 chr3:117796951-117797051 2.17e-01 56_[-2(5.29e-05)]_33 chr15:30718647-30718747 8.27e-02 100 chr9:71073839-71073939 6.25e-04 75_[-6(4.50e-05)]_[-10(5.39e-05)] chr8:37260883-37260983 8.07e-01 100 chr13:107449383-10744948 9.34e-02 4_[+5(1.19e-06)]_85 chr3:149203402-149203502 6.00e-01 100 chr1:49899447-49899547 4.38e-04 2_[+3(1.50e-07)]_36_[+2(5.18e-06)]_\ 21 chr19:26795529-26795629 5.46e-03 23_[+10(2.19e-06)]_66 chr1:119886361-119886461 4.19e-03 67_[+9(1.90e-05)]_25 chr2:76469654-76469754 1.48e-01 100 chr10:9113641-9113741 3.01e-04 48_[+3(2.02e-05)]_22 chr7:117237190-117237290 5.28e-03 33_[+3(8.10e-05)]_19_[+2(3.49e-05)]_\ 7 chr10:25743266-25743366 4.37e-01 1_[-7(4.34e-05)]_84 chr7:57634948-57635048 5.21e-02 100 chr17:62824013-62824113 6.51e-02 17_[-9(3.79e-05)]_75 chr17:59286739-59286839 9.24e-06 11_[-5(8.74e-05)]_35_[+1(1.33e-05)]_\ 22 chr2:142554780-142554880 5.43e-04 55_[+10(6.22e-06)]_34 chr1:150540204-150540304 6.14e-04 31_[+6(1.10e-06)]_55 chr3:37548044-37548144 1.10e-03 33_[+1(6.14e-06)]_4_[-4(8.52e-05)]_\ 31 chr4:16378332-16378432 6.18e-03 2_[-2(2.40e-05)]_73_[+10(2.72e-06)]_\ 3 chr15:78026450-78026550 1.13e-02 48_[+2(6.05e-05)]_41 chr16:25165199-25165299 3.17e-01 89_[-5(4.15e-05)] chr13:97493627-97493727 6.37e-01 100 chr1:28214225-28214325 6.03e-11 18_[+2(2.85e-07)]_13_[-1(4.29e-07)]_\ 16_[+7(7.02e-05)]_6 chr6:55950641-55950741 3.42e-05 54_[-4(3.13e-05)]_8_[+2(7.54e-06)]_\ 16 chr1:43414848-43414948 3.43e-03 37_[+7(4.64e-07)]_48 chr9:122605254-122605354 3.85e-07 3_[-1(3.43e-06)]_76 chr11:75313680-75313780 1.04e-04 60_[+7(1.08e-06)]_25 chr6:84383062-84383162 1.77e-05 75_[-9(1.90e-05)]_17 chr13:113473566-11347366 7.40e-01 100 chr14:121155179-12115527 8.38e-01 100 chr15:72503564-72503664 1.72e-05 31_[+2(6.05e-05)]_12_[+7(4.79e-06)]_\ 31 chr17:81537236-81537336 7.93e-01 100 chr2:21615469-21615569 4.17e-01 100 chr19:23056817-23056917 4.88e-06 12_[-7(7.27e-06)]_47_[+5(3.75e-06)]_\ 15 chr12:5537758-5537858 4.69e-01 100 chr9:104784938-104785038 4.49e-04 6_[-5(5.35e-06)]_83 chr8:102694601-102694701 1.16e-05 4_[-1(6.88e-06)]_75 chr15:10922987-10923087 2.13e-01 100 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2_[+3(8.96e-06)]_19_[-6(1.74e-06)]_\ 35 chr14:93274414-93274514 7.07e-03 77_[+10(5.18e-07)]_12 chr10:56892403-56892503 9.20e-05 63_[+4(2.51e-07)]_26 chr18:74156689-74156789 3.51e-01 100 chr9:115570893-115570993 4.58e-03 83_[-7(2.75e-05)]_2 chr17:67584463-67584563 2.64e-03 17_[-2(5.29e-05)]_19_[+2(1.47e-05)]_\ 42 chr10:96697660-96697760 1.62e-03 100 chr19:36701346-36701446 4.39e-03 31_[-4(2.11e-06)]_58 chr8:10547634-10547734 4.34e-02 22_[+9(1.90e-05)]_70 chr3:102691722-102691822 1.76e-04 100 chr10:6152927-6153027 4.54e-04 23_[+2(9.73e-05)]_28_[-5(8.81e-06)]_\ 27 chr13:93440150-93440250 3.33e-05 29_[+4(1.42e-06)]_5_[+4(8.08e-06)]_\ 4_[-1(4.94e-07)]_19 chr7:118067257-118067357 5.17e-01 100 chr6:11540650-11540750 3.76e-02 100 chr3:10949476-10949576 9.99e-01 100 chr10:74855239-74855339 4.48e-02 70_[+2(1.47e-05)]_19 chr3:17853079-17853179 1.44e-03 14_[+3(6.80e-05)]_56 chr6:137997215-137997315 3.45e-01 100 chr7:122477771-122477871 4.21e-04 24_[-10(1.59e-05)]_26_\ [-2(2.40e-05)]_28 chr8:77401876-77401976 5.69e-01 100 chr8:32290084-32290184 3.38e-07 38_[+6(6.18e-08)]_4_[+4(1.60e-05)]_\ 4_[+1(4.34e-06)]_8 chr13:91719426-91719526 3.24e-01 100 chr3:29706698-29706798 9.06e-01 100 chr13:10187814-10187914 1.71e-01 100 chr16:50009538-50009638 1.71e-04 44_[-2(7.82e-05)]_[+9(1.90e-05)]_37 chr1:83582969-83583069 4.31e-03 47_[+10(7.51e-05)]_21_\ [-10(6.60e-06)]_10 chr13:4776813-4776913 4.28e-06 18_[+1(4.94e-07)]_17_[-7(9.32e-05)]_\ 29 chr6:6515930-6516030 4.26e-02 100 chr5:44876302-44876402 4.12e-01 61_[+4(5.16e-05)]_28 chr2:99170472-99170572 1.97e-04 40_[-3(3.30e-08)]_30 chr2:5165493-5165593 6.81e-05 31_[+1(1.27e-06)]_48 chr15:33916023-33916123 5.01e-01 100 chr13:92636892-92636992 1.07e-01 100 chr6:47320043-47320143 3.67e-01 100 chr17:66189959-66190059 1.11e-05 42_[-1(9.74e-07)]_37 chr6:85236968-85237068 1.70e-08 14_[+6(3.33e-06)]_11_[-5(2.83e-05)]_\ 13_[-9(1.90e-05)]_29 chr12:98705958-98706058 6.81e-04 10_[+4(9.51e-05)]_7_[-1(7.70e-06)]_\ 51 chr5:55457560-55457660 2.49e-01 56_[-10(6.22e-06)]_33 chr5:58175484-58175584 6.31e-01 100 chr13:99849579-99849679 9.35e-02 51_[-5(5.35e-06)]_38 chr9:46082418-46082518 6.05e-03 76_[-1(6.51e-05)]_3 chr10:13596021-13596121 1.32e-05 68_[+9(3.79e-05)]_5_[-5(1.19e-06)]_\ 8 chr4:148356531-148356631 4.74e-06 27_[+7(5.17e-07)]_34_[-1(8.60e-06)]_\ 3 chr18:11966960-11967060 1.45e-04 45_[-7(6.42e-07)]_40 chr4:87775705-87775805 6.58e-01 100 chr17:94226093-94226193 4.24e-03 100 chr12:40511713-40511813 3.62e-03 22_[-5(1.19e-06)]_67 chr4:90729153-90729253 1.62e-05 17_[-3(3.30e-08)]_53 chr1:142441542-142441642 3.09e-01 100 chr18:14463272-14463372 7.53e-08 61_[-3(1.47e-12)]_9 chr5:71842203-71842303 5.58e-04 79_[-2(1.35e-06)]_10 chr1:106569650-106569750 1.81e-02 59_[-2(7.54e-06)]_30 chr1:139225083-139225183 3.68e-02 100 chr13:42996202-42996302 1.53e-01 100 chr16:34209065-34209165 7.88e-05 40_[+7(8.33e-05)]_45 chr15:72390383-72390483 4.83e-01 100 chr1:105947027-105947127 9.53e-05 36_[+1(1.19e-05)]_2_[-9(3.79e-05)]_\ 4_[-2(5.29e-05)]_18 chr19:19644407-19644507 3.95e-03 47_[-4(2.11e-06)]_10_[+3(5.87e-05)]_\ 2 chr11:12496689-12496789 6.34e-01 100 chr4:70032432-70032532 2.97e-02 59_[-2(7.82e-05)]_30 chr16:79718154-79718254 3.27e-02 85_[+2(2.04e-05)]_4 chr7:80776081-80776181 7.58e-07 32_[+2(6.05e-05)]_5_[-2(6.29e-06)]_\ [-1(1.82e-05)]_20 chr5:49370661-49370761 3.24e-04 3_[+6(5.03e-08)]_83 chr18:47857559-47857659 1.46e-04 7_[-2(5.18e-06)]_20_[+1(8.55e-05)]_\ 41 chr12:82731506-82731606 8.89e-01 100 chr5:36719076-36719176 5.63e-05 36_[-1(5.48e-06)]_43 chr18:43633406-43633506 1.75e-05 68_[+1(6.14e-06)]_11 chr18:79207560-79207660 4.41e-01 100 chr5:103497372-103497472 3.17e-01 100 chr4:87273402-87273502 4.96e-07 [-4(1.48e-05)]_9_[-7(3.90e-08)]_38_\ [-1(9.35e-05)]_6 chr11:118793498-11879359 3.71e-03 39_[+2(4.06e-05)]_50 chr1:130775890-130775990 4.84e-01 100 chr18:53328158-53328258 9.33e-01 100 chr15:64246374-64246474 3.12e-03 79_[-6(3.59e-05)]_7 chr4:50507443-50507543 2.84e-01 100 chr7:132005957-132006057 2.13e-02 25_[-2(2.40e-05)]_64 chr4:139258522-139258622 4.88e-06 25_[-9(1.90e-05)]_1_[-2(5.29e-05)]_\ 10_[-10(1.94e-05)]_34 chr9:50067708-50067808 1.91e-03 100 chr11:94881155-94881255 1.64e-03 63_[-1(9.35e-05)]_16 chrX:140871130-140871230 2.12e-01 100 chr12:11762992-11763092 1.72e-02 2_[+5(5.25e-05)]_59_[-7(2.24e-05)]_\ 13 chr2:6464039-6464139 5.46e-04 69_[+3(3.75e-09)]_1 chr8:97958130-97958230 7.68e-01 100 chr4:125856158-125856258 8.46e-05 41_[+1(2.41e-07)]_38 chr1:22748555-22748655 8.06e-02 100 chr17:51645793-51645893 1.11e-04 20_[+4(2.11e-06)]_69 chr9:100917054-100917154 9.47e-03 52_[-6(2.86e-07)]_34 chr12:119792557-11979265 5.49e-02 25_[-3(2.66e-07)]_45 chr13:35226095-35226195 2.36e-03 37_[+3(8.34e-05)]_33 chr18:75579555-75579655 1.47e-01 100 chr18:24731016-24731116 1.69e-04 9_[+9(1.90e-05)]_83 chr4:66894484-66894584 1.18e-02 65_[+1(3.34e-05)]_14 chr15:45020937-45021037 8.72e-01 100 chr1:81098890-81098990 4.74e-01 100 chr19:53065943-53066043 4.35e-07 5_[+2(3.49e-05)]_56_[+1(1.48e-08)]_\ 7 chr15:19273483-19273583 6.44e-02 55_[-3(2.54e-05)]_15 chr13:5398967-5399067 1.75e-03 74_[-1(2.24e-05)]_5 chr13:40651096-40651196 4.62e-03 39_[+1(3.03e-05)]_20_[-5(1.58e-05)]_\ 9 chr10:98101282-98101382 1.59e-02 76_[-9(3.79e-05)]_16 chr15:24407607-24407707 1.80e-03 65_[+2(2.68e-05)]_24 chr1:106069517-106069617 3.60e-04 58_[+9(3.79e-05)]_34 chr13:41677214-41677314 1.85e-01 66_[-10(8.01e-06)]_23 chr5:132663783-132663883 2.34e-03 7_[+7(2.83e-06)]_78 chr2:117308929-117309029 1.25e-03 23_[-1(4.92e-05)]_24_[-2(1.47e-05)]_\ 21 chr12:32138320-32138420 4.79e-03 15_[+3(5.05e-05)]_55 chr6:5442658-5442758 4.35e-03 26_[-1(9.35e-05)]_31_[+4(9.51e-05)]_\ 11 chr11:54727620-54727720 1.84e-02 39_[-1(5.48e-06)]_40 chr5:52213073-52213173 3.03e-02 100 chr5:41076356-41076456 2.47e-02 85_[+2(4.06e-05)]_4 chr18:85155056-85155156 9.51e-04 30_[-1(4.92e-05)]_4_[-7(9.84e-05)]_\ 30 chr17:63211072-63211172 9.65e-01 100 chr6:96044339-96044439 2.71e-09 5_[+9(1.90e-05)]_12_[-1(1.86e-06)]_\ 8_[-3(2.82e-08)]_16 chr15:32129032-32129132 1.51e-06 3_[+9(1.90e-05)]_2_[+4(1.17e-06)]_\ 48_[+2(2.68e-05)]_17 chr6:101226506-101226606 1.05e-03 100 chr16:49164301-49164401 4.32e-05 32_[+6(1.68e-08)]_54 chr11:87955078-87955178 2.05e-03 65_[-6(3.33e-06)]_21 chr11:13512860-13512960 7.82e-01 100 chr11:52648201-52648301 2.26e-06 4_[+1(2.41e-07)]_47_[-4(6.09e-06)]_\ 17 chr3:79927068-79927168 2.79e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-40.local ********************************************************************************