******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L23_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:96423458-96423558 1.0000 100 chr17:66211509-66211609 1.0000 100 chr6:108316361-108316461 1.0000 100 chr14:103292391-10329249 1.0000 100 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1.0000 100 chr12:102532035-10253213 1.0000 100 chr5:52135375-52135475 1.0000 100 chr5:54740132-54740232 1.0000 100 chr13:101233396-10123349 1.0000 100 chr9:41585717-41585817 1.0000 100 chr10:18631629-18631729 1.0000 100 chr4:132946316-132946416 1.0000 100 chr17:84323223-84323323 1.0000 100 chr4:82589441-82589541 1.0000 100 chr17:76492872-76492972 1.0000 100 chr12:46040502-46040602 1.0000 100 chr4:85324701-85324801 1.0000 100 chr1:151138297-151138397 1.0000 100 chr17:86077944-86078044 1.0000 100 chr5:68955060-68955160 1.0000 100 chr1:119221775-119221875 1.0000 100 chr1:149198948-149199048 1.0000 100 chr13:44769769-44769869 1.0000 100 chr16:22484323-22484423 1.0000 100 chr15:72630635-72630735 1.0000 100 chr1:117122935-117123035 1.0000 100 chr18:82758574-82758674 1.0000 100 chr11:20987659-20987759 1.0000 100 chr4:66613556-66613656 1.0000 100 chr16:63707088-63707188 1.0000 100 chr7:75008450-75008550 1.0000 100 chr5:44699940-44700040 1.0000 100 chr18:36158638-36158738 1.0000 100 chr12:88996093-88996193 1.0000 100 chr5:24266565-24266665 1.0000 100 chr18:32970719-32970819 1.0000 100 chr18:68167069-68167169 1.0000 100 chr5:101020744-101020844 1.0000 100 chr4:82411989-82412089 1.0000 100 chr12:5254176-5254276 1.0000 100 chr1:138928714-138928814 1.0000 100 chr18:40369849-40369949 1.0000 100 chr15:62286979-62287079 1.0000 100 chr4:44199904-44200004 1.0000 100 chr7:129066827-129066927 1.0000 100 chr4:128440525-128440625 1.0000 100 chr9:46703702-46703802 1.0000 100 chr11:109931305-10993140 1.0000 100 chrX:137926843-137926943 1.0000 100 chr12:13779711-13779811 1.0000 100 chr19:48727549-48727649 1.0000 100 chr8:87851321-87851421 1.0000 100 chr4:116928146-116928246 1.0000 100 chr1:25327137-25327237 1.0000 100 chr17:8727793-8727893 1.0000 100 chr9:96678176-96678276 1.0000 100 chr13:4666306-4666406 1.0000 100 chr13:37415684-37415784 1.0000 100 chr18:65102704-65102804 1.0000 100 chr18:7481721-7481821 1.0000 100 chr4:58642180-58642280 1.0000 100 chr15:43446518-43446618 1.0000 100 chr1:88443933-88444033 1.0000 100 chr19:32641479-32641579 1.0000 100 chr15:20546429-20546529 1.0000 100 chr13:6165903-6166003 1.0000 100 chr13:42934772-42934872 1.0000 100 chr10:102102503-10210260 1.0000 100 chr15:25269508-25269608 1.0000 100 chr1:118759520-118759620 1.0000 100 chr13:43010112-43010212 1.0000 100 chr5:129124015-129124115 1.0000 100 chr2:104363277-104363377 1.0000 100 chr12:34871027-34871127 1.0000 100 chr5:146317994-146318094 1.0000 100 chr11:67730999-67731099 1.0000 100 chr5:48430429-48430529 1.0000 100 chr5:31984577-31984677 1.0000 100 chr18:73948006-73948106 1.0000 100 chr17:30283620-30283720 1.0000 100 chr6:93253427-93253527 1.0000 100 chr15:31660793-31660893 1.0000 100 chr6:98551805-98551905 1.0000 100 chr16:34483951-34484051 1.0000 100 chr11:96243727-96243827 1.0000 100 chr11:22652902-22653002 1.0000 100 chr11:65461082-65461182 1.0000 100 chr3:71959375-71959475 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L23_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L23_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L23_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L23_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.266 C 0.234 G 0.234 T 0.266 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_L23_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.281 C 0.219 G 0.219 T 0.281 ******************************************************************************** ******************************************************************************** MOTIF GDDKGRGGRDGDGKGGGAGGR MEME-1 width = 21 sites = 164 llr = 1573 E-value = 3.0e-102 ******************************************************************************** -------------------------------------------------------------------------------- Motif GDDKGRGGRDGDGKGGGAGGR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 253123333313113::6214 pos.-specific C 2::111::1::1:1::11::2 probability G 52455465638294689:673 matrix T 13231212:4:4:411:2221 bits 2.2 2.0 1.8 * * 1.5 * * Relative 1.3 * * ** Entropy 1.1 * * ** * (13.8 bits) 0.9 * * *** * 0.7 * * * *** ** 0.4 * ** *** * ******** 0.2 ********************* 0.0 --------------------- Multilevel GAGGGGGGGTGTGGGGGAGGA consensus TATAAAAAA A TA T G sequence GT G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDDKGRGGRDGDGKGGGAGGR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr5:112850986-112851086 + 25 2.93e-10 ggagagagaa gaggggaagggggggggagga gggagagtga chr15:25269508-25269608 + 2 3.81e-10 C GGGGGGGGGGGGGGGGGATGA GTCACTCAGT chr10:17095551-17095651 + 51 4.88e-10 aaacatgggg gtgggtgggggtgggggtggg gggcagtctt chr2:43950210-43950310 + 71 1.00e-09 TGTGgggagg gagggagggagagagggaggg agggaggga chr11:113971806-11397190 - 28 3.06e-09 CTCATAGGGA GGAGGAGGGAGAGGAGGAGGG AGGAGGAGCG chr3:5372787-5372887 + 51 3.79e-09 CTTAGggggt gtaggggaaagagggggaggg aagatggccc chr15:72377137-72377237 + 31 1.53e-08 ctcagaatat gtttaagggggagggggaggg aaggagtctg chr6:144639304-144639404 - 37 2.23e-08 TGAAGGGAGT GAAGTGGGGTGGGTGGGATGA GCATTGGGAA chr2:90559739-90559839 + 15 2.68e-08 AGTCTAATTC AGGTGTGGGGGTGGGGGTGGA GAATTCTGGC chr1:155608448-155608548 - 30 3.20e-08 GGTGAGCACT CATGGAGGGAGGGAGGGAGGG AGACTGCTCT chr14:114567852-11456795 + 20 4.57e-08 AAGGGAAAGT GGGGGGTGGGGTGGGGGCGGT GGGACGTCCT chr10:108554989-10855508 + 23 6.44e-08 TTGTAGCGGA GATGTGGGAGGTGTGGGAGGT GGAGCAGTGG chr16:85092683-85092783 - 60 7.63e-08 GAGCCATGTG CAAAGGGGGAGGGTGGGTGGA GTCTAACGAT chr10:108927663-10892776 - 44 7.63e-08 AGAAGGAAGG AAGGAAGGGAGGGAGGGAGGG AGAGAGAGAG chr17:66276705-66276805 - 43 1.06e-07 TGGCAGGGAA GAAGAGGAAAGGGAGGGAGGG GGCTGTCACC chr6:40074439-40074539 - 49 1.25e-07 GCTATTTATA GGAGGAAGAAGAGTAGGAGGA GAAGGATGGG chr16:4495797-4495897 - 78 1.25e-07 GG GAAGTGTAGGGAGTGGGAGGG CAGCTTAGGA chr17:70629889-70629989 + 24 1.25e-07 CATGTCTAAT AAGTGGGAGGGAGGAGGTGGG GTGGCAGCTG chr18:65221214-65221314 - 36 1.25e-07 GACTCAGGCA GTAGGCAGGAGAGTGGGAAGA TGTATGGAAG chr8:34499146-34499246 - 62 1.72e-07 TGATGTAGTG GAACAGAGGTGTGTGGGTGGG TGCTAGGTGG chr10:76648578-76648678 - 13 1.72e-07 GACTCAAAGA GTGGGAAGGAGTGTGGGAAGT TGGTGTGACT chr14:117718878-11771897 - 49 2.35e-07 GAAGAGAGCA GAAGGGGGGTGGGCGGGAATA TGAGCATGAA chr13:39092170-39092270 - 78 2.35e-07 GA GAGGGAGAGGGAGAGGGAGAG GGATAGACAG chr13:93241137-93241237 + 80 2.35e-07 aaggactgag gtaggagggaaggagggagga chr3:40169194-40169294 - 65 2.35e-07 TGGGTTTACC TACTGGGTGGGTGTGGGAGGA GCTATCTTGA chr2:49030181-49030281 - 60 2.74e-07 AGGAGGAATG GAATGAGGATCTGTGGGAGGA TGGACCATGG chr17:84323223-84323323 + 25 4.29e-07 TAGGAAGGTA GAGTGGGGAGGAATGGGAAGA GGGGAGAGAA chr4:132946316-132946416 + 79 4.29e-07 GAGGCTGTgg gggtgggagtggggcggagga g chr18:57596113-57596213 + 58 4.29e-07 AAAGAAGTGT GAGGGAGGGTAAGTGGGCTGG AAACAAAACA chr7:37809837-37809937 - 5 4.29e-07 ACACAGCTCC TGAGGGTAGTGTGGAGGAGGA GGTG chr8:48221262-48221362 - 76 4.29e-07 TGTC CGTGGGAGGAGGAGGGGAGGG AACAACACTC chr2:11429605-11429705 - 61 4.96e-07 TGACTCAGAG AAGGAGGAGTGAGAGGGCGGG CAGTGAGAAG chr12:27644958-27645058 - 63 4.96e-07 GCAATTCTCT GAAGGCTGAGGAGGGTGAGGA GGCTGGAAGC chr13:37415684-37415784 + 20 5.73e-07 TGGCTAGTGT TGTGTGGGGTGTGTAGGAGGC AACTAGCTTC chr12:72213393-72213493 + 80 5.73e-07 aaggcaacgg gataggaagggagggggagtg chr13:68910104-68910204 + 44 5.73e-07 ttgggcagtg gaagggaaaggtggggctgga gatcttagag chr18:32410681-32410781 - 13 6.61e-07 ACAATTGCTG GGGGGCGGAGGGGAGGGTAGA GAAGACGCTC chr3:85423141-85423241 - 1 7.61e-07 CTGTTATTCT GTGTATGTGGGTGGGGCAGGA chr16:90971625-90971725 + 27 7.61e-07 AAGCTCgtgg gtgcgtgggtgtgtgtgtggg catgtgtgtg chr13:6998613-6998713 - 36 8.75e-07 GGAGAAGGCA GGGGGCGGAGGGGGGGGGGGC TCATTTCTCT chr4:46770500-46770600 - 70 8.75e-07 TGGACAGTGA GTGGGTGGGTGAGTATGTGGC CAGATGGATA chr9:62783160-62783260 - 22 8.75e-07 CAAAGCGGCT GAGAGGAGCTGCGGGGGAGGC TGGAGAGCAG chr15:43446518-43446618 + 80 1.00e-06 AGATGTACTT GATTGGGTGGAGGTGGGAGGT chr1:90289831-90289931 + 3 1.00e-06 GT GGTGGGGGTGGGGTGGGAAGG ACTTGGAGGT chr4:136494089-136494189 + 7 1.00e-06 TAGGAA GTGTGGGTGTGAGGAGGATGT TGCTGTGTCA chr3:107796160-107796260 + 50 1.15e-06 CTAGCTGTTA AGTGGCGGGGGTGGAGGAGAG AGGAGGATTT chr14:119489222-11948932 - 2 1.50e-06 GAGGAATGTC ATAGTGTGGTGTGGGGGATGG A chr4:137200303-137200403 - 38 1.50e-06 TGCGTCAGCT CTGGACATGTGAGTGGGTGGG TGAGCACCAG chr15:30890539-30890639 + 16 1.72e-06 TTGTGTATTC AAATAGGGATGTGTAGGTGGC AAAGATAGAG chr6:35482416-35482516 + 13 1.72e-06 ACAACTAGAA GATGCCAGGTGAGGGGGAGAA GCCAGCGAAG chr4:66157403-66157503 + 27 1.72e-06 AGTCGTGTGT GAGTCAAGAGGTGGGGGAGAG GCATGTGTGT chr14:64595117-64595217 - 63 2.23e-06 GTGTAAGGGG GTTCAGGAATGTGGGGGAAGA TGCCTCAGCC chrX:13347268-13347368 - 18 2.53e-06 ATGCGGCGGG GAGTTGAGAGGTGGGGGCGAA CTAAGGCTGG chr4:66610693-66610793 + 59 2.87e-06 GCAGAACTCC CAAGAAAGGAGTGTAGGAAGC TATGAATTCA chr4:11879788-11879888 + 53 2.87e-06 ttcactgaac attggactgagtgtgggagga cagtagcagc chr15:76771268-76771368 + 32 3.25e-06 GGCTATAGgt gtgtgagtgtgtgtgtgtgtg tgtgtgtgtg chr19:10367786-10367886 + 55 3.25e-06 TTGAAAAAGA GAAGGTGGAAGAGAAGCAGGG GGAGGCTTCC chr9:63091807-63091907 + 66 3.25e-06 GGTCTTCTAT AAGGAAGAAAGCGTAGGAGGA CCAGAGGGAG chr15:93748536-93748636 - 69 3.25e-06 GTGGAGGAAT GAAGGGGTGAGAGAGTGAGTC ATTCATCTGC chr12:5254176-5254276 - 62 3.68e-06 CTGAGTGGGA CAGGCCGAGAGAGGAGGATGA CAGCACAGAC chr10:64215669-64215769 + 70 3.68e-06 GGAGGAGTGG CTTTAGGGATGTGGGGGACGG AACGGTTTGG chrX:48174873-48174973 + 19 3.68e-06 gggtgtgtgg gtgtgcatgtgggtgtgtggg tgtgcatgtg chr6:98551805-98551905 + 9 4.16e-06 TTCTCTGA AGTTATGGGTGGGGGGCAGGG TAAGCAAGGC chr18:65102704-65102804 - 57 4.16e-06 GCTGCTCTGG CGGGAAGGCTGTGTGGGCAGA ACCCCAACAT chr6:101173379-101173479 - 1 4.70e-06 TCTCTCGTGT GTGTGTGTGTGTGTGTGTGTA chr5:27326567-27326667 - 76 4.70e-06 AGAG GATGGAGTGGGTGGTGGAGAC TTGAGTGCCA chr10:124249932-12425003 + 2 4.70e-06 T GGAAAGTGGTGTGTAGGAGGT ATTAGCACAA chr5:151059730-151059830 + 72 5.97e-06 TTTGGTTGAG GTTGGCGTGTGGGGGTGTTGA GCCAGATT chr18:68167069-68167169 + 73 6.71e-06 agatgggtct aaatgaatgagtgtgggttga attccag chr4:85324701-85324801 - 45 6.71e-06 TCTCAGAACT GAGTAGGGATGTGGTTGAGTA GGAATTAGAC chr10:99081452-99081552 - 22 6.71e-06 AAATAGAGCG GGAGAGGTGAGGAGAGGCGGA GCAACAGCTC chr3:107159904-107160004 + 72 6.71e-06 GGAGGAATCT GAGAGAGGGCGCGGGGGCGGC CACCGAAC chr4:69254088-69254188 - 55 6.71e-06 TAGAGATTCT GATGGTGTGTGGGAAGGTGTG ATGAGATAAT chr18:78306073-78306173 + 65 6.71e-06 CACTTAAAGT GGGTGTGTGTGAGTGTGTGTA TCCATCACTA chr19:47305006-47305106 + 42 8.46e-06 CCCTATACTT CTGCTGGGGAGTGGGGGCTGC CACTTCTACC chr4:64068111-64068211 - 49 8.46e-06 AATGTCAAAA GAGGAGAGAAATGGAGGCAGA AAGTGGAATA chr12:52748147-52748247 - 47 8.46e-06 CCATCCTCCT GTCTCAGAGAGAGTAGGAGGA TCACAGAAAC chr17:8727793-8727893 - 12 9.48e-06 GCCGACATGC GAGCGGAGAAGTAGAGGCGGG CTACACAGTG chr9:62476985-62477085 - 50 9.48e-06 TGCCTTCCCT GCAGGGCGGTGGGGGTGTGGA CCAGGCCAGG chr8:73313913-73314013 + 12 9.48e-06 cttcctactg ctgtggcagtatggaggagga acttagccgc chr9:46703702-46703802 + 53 1.06e-05 CAGGCCATGG AGAGGGTGCGATGTGGGAGGC CAGACCTGCT chr2:81006806-81006906 + 46 1.06e-05 CTCTGGTTGT CGGGGAAAGAGAGTAGGAAGT GAGAAGATCA chr16:9886828-9886928 + 7 1.06e-05 tcctat cagtggggaggtatgagagga tctcgggtct chr13:5621892-5621992 + 26 1.33e-05 aatgtgggct ggataagaaagtggaggcaga tcttggagat chrX:162698849-162698949 + 48 1.33e-05 TGGGTGTCAA CATCAGAGGTGCGGAGGTGGA AGACACCAGC chr3:58240574-58240674 - 52 1.48e-05 AGAGAAGAAA GCAAGGGGGTGGGGTGGAGTA TGAACAACTC chr3:129588740-129588840 - 26 1.48e-05 CGACACACCC TTTTGTGGGTGTGTGTGAGTC TTGGTCCTCT chr2:96717267-96717367 - 76 1.48e-05 AGCA TAAGGAATGTAGGTGGGAAGA TTAAAATTGA chr2:117450158-117450258 - 39 1.65e-05 AACTGCAGCC ATATGGGTAAGAGGAGGTGTG TGCAGCAGAC chr13:107407590-10740769 - 17 1.83e-05 AAATAGCTGA CGGGATGGGAAAGGGGGCTGC TTGATCCTGT chr12:51058668-51058768 + 33 1.83e-05 aaatagaagg aaggaataatgaggaggaagg gcggacctcc chr5:125752458-125752558 + 77 2.04e-05 ACGGCATAGC TTTAAAGGGAGTATGGGAGGA ACC chr3:39527185-39527285 + 65 2.27e-05 TTCAAAAAAA GGGGGTAGATGTGAAGCATGG CTAAAGATGA chr11:35004753-35004853 + 26 2.27e-05 CCTCACTGGA GATTAGATAAGAGGGAGAGGA AACTGGAGCC chr19:44372885-44372985 + 5 2.27e-05 GGAG CAGGGTAGATGGGCAGGTGTA GACATAACTA chr18:64772639-64772739 - 3 2.27e-05 GAGTTGTTAT TTTTAAATGAGAGGGGGAGGT TG chr6:78280486-78280586 + 69 2.52e-05 GCTTCATATT GTGGTGGGAAGAATGTGAAGA GGGAGCTACT chr17:84113920-84114020 + 18 2.52e-05 ACGGCCCAGG CTTGGGGAGGGAGGAGGCCGC CACATGGTGA chr8:23780039-23780139 + 45 2.52e-05 TCTCATCTTG CTGTGGGagtacgggggttgc agaaacacac chr18:32970719-32970819 - 40 2.79e-05 CAGAAATGTA ATTGCTTGATGTGTGGGAAGA CCTTTCCTAT chr3:86841027-86841127 - 54 2.79e-05 CGCCTCTCCT GAGTCAGAACGTGGGGGAGTC CTCACGTTGT chr11:43865248-43865348 + 36 2.79e-05 TTGGAAATGA AAGTCTTGGTGTGTGGGAAGT GTGCATTTCA chr16:44210640-44210740 - 32 2.79e-05 TGGTGTGTGG GAGGACAGGGCTGAAGGATGA GGCATACTGA chr4:6037111-6037211 + 80 3.09e-05 CAAGCCTAGA GTGTGGGTGTGAGTATGATAA chr1:97625425-97625525 + 74 3.09e-05 ATAAGACACT GCAGGCGAGGGGGAAGGAAGC AGAAGG chr3:105601071-105601171 - 8 3.09e-05 CAGCTTCATG TAGGTGGCAAGTGTAGGATGA ATCAAGA chr4:140278221-140278321 - 24 3.42e-05 CAGTGACTCA GGCTGGGAAGCAGTGGGTGGC CACTTCCTTC chr8:28650377-28650477 - 42 3.42e-05 ACGATGAACA GTAGGGTCGGGTGCGGGCAGA ATCGGCATCA chr15:30974933-30975033 - 36 3.42e-05 TGAGCAGGTG CACTGCAGAGGAGTGGGCGTG CCCTGGATGT chr1:193748035-193748135 - 71 3.42e-05 TGAAAACCA GTGGGAACATGTGAGGGCTGA CTACAGTCTG chr6:59660997-59661097 + 13 3.42e-05 TCTATTGCAT TTGGCACAATGTGTGGGAGGC AAGAATTTAC chr14:9583551-9583651 + 50 4.17e-05 ACTTAGCACA GGGGGTGGAAGAGGCAGAGGG CCAATTTCTG chr5:36339232-36339332 - 30 4.17e-05 AAAGCAGATG TAAATGTGAAATGGGGGAGGA CTCTCAATGA chr16:27420901-27421001 - 35 4.17e-05 TCCAGTGGAG CAGGAGAAGAGTGGAGGAAAT TGTTAAGAAG chr4:82589441-82589541 + 34 4.61e-05 TGATTCAAAC CTGAGGAAAAGTGGGTCAGGA CTGACATCTG chr7:74421845-74421945 - 59 4.61e-05 CTCCATACCT TGGTGGGTGTGAGCTGGTGGC TGAAGCTTCA chr16:37492558-37492658 - 64 4.61e-05 ACTGTTCATA GATGGGGGCGGTGCATGCAGG AATTTTTGAG chr2:33544781-33544881 + 53 4.61e-05 GAGGGCCTCT GACGTCGGAggtggtggtggt ggtaatggtg chr8:66725303-66725403 - 65 4.61e-05 AAAAGCTTGC AAACCTGTGTGTAGGGGAGGA TATCTGTAAT chr13:42934772-42934872 - 5 5.08e-05 CCTCAATGTG TAGGACGGATGACGGGGAAGG CTCT chr1:189756298-189756398 + 17 5.08e-05 ACTGGTGCCC CGTGGGTGGAGTGGGGTAAGA TGGGAATTCT chr19:32641479-32641579 - 67 5.59e-05 CACCTTGTGA TGGGTGCAATGTGGAGGAAGG GAGGTGCTTG chr16:24536213-24536313 + 6 5.59e-05 ATCTG GAGTGTGGGAGGACAGGCAGA CACACACAGG chr9:113508871-113508971 - 65 5.59e-05 ACTGGGAAGT CTTGGAAGGAGTGGGTGAATT CTCTGACTTG chr14:76767907-76768007 - 45 5.59e-05 CCCGGAGCAA GAATTGCAATGAGTAGGAGTG ACTGAAAGGG chrX:109134690-109134790 + 29 5.59e-05 TCTCCCTACA GAATATGGGGGTGGTGGTTAG TTTGCTGGAT chr5:31984577-31984677 + 27 6.15e-05 TAACAGCTAG TATTTTGGGTGGGAGGCAGGC TTCTGTAGGC chr7:75008450-75008550 - 15 6.15e-05 CATCCAGCAC ACAGAAGGATCTGGAGGAGGG AGAAAAGCAT chr13:5779410-5779510 + 71 6.15e-05 CATTCTAAGA AAAAGATAGAGTGTGGGATTG TCAAGCAAG chr4:104563512-104563612 - 50 6.15e-05 TGAACATAAT TAGGGATTGTGGGTGGGACTG GGAGCCTGAG chr1:190093295-190093395 + 41 6.15e-05 CACACAGATG AGCAGTAGGAGAGGAGGAAGG AGCTGCCATG chr5:147043149-147043249 + 33 6.76e-05 GTTTGCTGAA GAGTGAACGTGGGCAGGAGAG GCAGAGCAGA chr8:109373760-109373860 - 63 6.76e-05 CAGAAGAGGG AGAAAAGGGAATGTGGGTGTA ACTTCTTACC chr1:158328190-158328290 + 4 6.76e-05 GAA CAAGGGAGAGAGATGGGAGAG AACTGTGGCA chr6:52680370-52680470 - 51 6.76e-05 TTGTATTCAT CTGAGAGGATCAGTGGGTGGT TCGTGGATAG chr2:57934024-57934124 + 23 7.43e-05 ggcatatgcc aaggaggggtatggttgagtc atatggtata chr18:86514380-86514480 - 41 7.43e-05 ATAGGTAAAA CTCTGGTGGGGTGTGGGTTTC GCCTTTCCTC chr4:70058813-70058913 - 31 7.43e-05 CGAGGTGGAG CGGGCCGGCTCGGAGGGAGGA GATGAGTTTT chr17:45794854-45794954 - 58 8.15e-05 GAACAGGATC TGAGTAATGGGAAGAGGAGGG AGCCTGCTGG chr18:40279227-40279327 + 40 8.15e-05 TTGAACCTCA CAAGTTGTATGTAAGGGTGGG GAACAGATAG chr3:117992314-117992414 - 29 8.15e-05 ACTTTTGCAT GTGGCAGACGAGGTGGCAGGG TGGTGGGCAG chr4:82411989-82412089 - 8 1.07e-04 GTGCTTTTGT GTTTATGTGTCTGGGGCTGGA ATGGGGA chr5:149926700-149926800 - 21 1.07e-04 AACCCAGCAG ATGGTGAGGAGGATGTGAGTG TTAAAACACT chr9:93150051-93150151 + 3 1.07e-04 TG CATCAGTTCTGGGTAGGAGGA CAATTTGCTA chr10:102102503-10210260 - 76 1.17e-04 AGTG TAGGTGTAGAATGTGGGAGTT TTGGTAACAC chr6:95369363-95369463 - 6 1.28e-04 TGTAGATGTA GGAATTGAGTGTGTAGGATAA ACCAA chr14:86742456-86742556 + 73 1.28e-04 TGCCAAAAGC GAAGACATGAGCGTGGGGAGA CATTTAG chr8:32538456-32538556 - 34 1.40e-04 GGGTACAGCA GATTTCAGAGGCGTGGCATGG TGAGCAATCC chr19:21716579-21716679 - 49 1.52e-04 TGGCAGCAAA ATTTGGATGTAGGCGTGAGGA TCTAGGCGTT chr9:97816864-97816964 - 72 1.52e-04 AGAATGTG GGAGGCAGTGGTGTTGGTGTA TGGGGAGAAA chr9:101977048-101977148 - 40 1.66e-04 GAAGTAGGGA GGGTGCAATTGTGGGTGTAGA TTCCTGCTGC chr5:45278513-45278613 - 47 1.66e-04 TCAGGGAATG GATTCTGGGGGCGGTTGATGA AATTTTCTTT chr5:4959144-4959244 - 30 1.81e-04 AGATCCTGGG CTTAGCGAGTAAGTGGGTGTC AAGAGAAGGA chr1:38280476-38280576 - 76 1.81e-04 ATGG ATATATAAAAATGTGGGATGG GTAACAAATG chr11:81511338-81511438 + 41 2.74e-04 agagagcagg gatccgggagatggtggtgtg tgtgcctcct chr13:107268909-10726900 + 2 3.22e-04 c cagaaaaacggcgtaggatgg actatgccgg chr1:43140825-43140925 + 6 3.77e-04 GAAGC GAGCGAGGCAGGGGAAGAGAC GCATTTCCAG chr19:28381374-28381474 - 18 3.77e-04 GCGCCCAAAG TGCGGTTTCGGAGTGGGATGC TGGTTCCTCG chr3:99725838-99725938 + 42 4.74e-04 aagcagagct gtatatttgtgggagggtaaa aaatttagca chr3:149074571-149074671 + 33 5.12e-04 TATCCCTTGT GCTGTGGCGTGTGTGGCACGG AAGGAGCATC chr2:9620491-9620591 + 3 5.51e-04 AT CGAAGGGAGCGAGTGGCTTGC CGGAGCTGCT chr1:127467121-127467221 + 56 5.94e-04 TGCCTCTGTG TGAGAAGAAAGCGCAGGCGTA GACTTCCGAC chr1:138928714-138928814 - 26 6.39e-04 CCAAGTGACT CATTGCGACGGAATGGCAGTG TTGGGAAGCC chr1:88443933-88444033 + 37 2.28e-03 GGCAGATGCC GTGGAGGAGGACCGATGCGGT ACTAAGAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDDKGRGGRDGDGKGGGAGGR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:112850986-112851086 2.9e-10 24_[+1]_55 chr15:25269508-25269608 3.8e-10 1_[+1]_78 chr10:17095551-17095651 4.9e-10 50_[+1]_29 chr2:43950210-43950310 1e-09 70_[+1]_9 chr11:113971806-11397190 3.1e-09 27_[-1]_52 chr3:5372787-5372887 3.8e-09 50_[+1]_29 chr15:72377137-72377237 1.5e-08 30_[+1]_49 chr6:144639304-144639404 2.2e-08 36_[-1]_43 chr2:90559739-90559839 2.7e-08 14_[+1]_65 chr1:155608448-155608548 3.2e-08 29_[-1]_50 chr14:114567852-11456795 4.6e-08 19_[+1]_60 chr10:108554989-10855508 6.4e-08 22_[+1]_57 chr16:85092683-85092783 7.6e-08 59_[-1]_20 chr10:108927663-10892776 7.6e-08 43_[-1]_36 chr17:66276705-66276805 1.1e-07 42_[-1]_37 chr6:40074439-40074539 1.3e-07 48_[-1]_31 chr16:4495797-4495897 1.3e-07 77_[-1]_2 chr17:70629889-70629989 1.3e-07 23_[+1]_56 chr18:65221214-65221314 1.3e-07 35_[-1]_44 chr8:34499146-34499246 1.7e-07 61_[-1]_18 chr10:76648578-76648678 1.7e-07 12_[-1]_67 chr14:117718878-11771897 2.3e-07 48_[-1]_31 chr13:39092170-39092270 2.3e-07 77_[-1]_2 chr13:93241137-93241237 2.3e-07 79_[+1] chr3:40169194-40169294 2.3e-07 64_[-1]_15 chr2:49030181-49030281 2.7e-07 59_[-1]_20 chr17:84323223-84323323 4.3e-07 24_[+1]_55 chr4:132946316-132946416 4.3e-07 78_[+1]_1 chr18:57596113-57596213 4.3e-07 57_[+1]_22 chr7:37809837-37809937 4.3e-07 4_[-1]_75 chr8:48221262-48221362 4.3e-07 75_[-1]_4 chr2:11429605-11429705 5e-07 60_[-1]_19 chr12:27644958-27645058 5e-07 62_[-1]_17 chr13:37415684-37415784 5.7e-07 19_[+1]_60 chr12:72213393-72213493 5.7e-07 79_[+1] chr13:68910104-68910204 5.7e-07 43_[+1]_36 chr18:32410681-32410781 6.6e-07 12_[-1]_67 chr3:85423141-85423241 7.6e-07 [-1]_79 chr16:90971625-90971725 7.6e-07 26_[+1]_53 chr13:6998613-6998713 8.7e-07 35_[-1]_44 chr4:46770500-46770600 8.7e-07 69_[-1]_10 chr9:62783160-62783260 8.7e-07 21_[-1]_58 chr15:43446518-43446618 1e-06 79_[+1] chr1:90289831-90289931 1e-06 2_[+1]_77 chr4:136494089-136494189 1e-06 6_[+1]_73 chr3:107796160-107796260 1.2e-06 49_[+1]_30 chr14:119489222-11948932 1.5e-06 1_[-1]_78 chr4:137200303-137200403 1.5e-06 37_[-1]_42 chr15:30890539-30890639 1.7e-06 15_[+1]_64 chr6:35482416-35482516 1.7e-06 12_[+1]_67 chr4:66157403-66157503 1.7e-06 26_[+1]_53 chr14:64595117-64595217 2.2e-06 62_[-1]_17 chrX:13347268-13347368 2.5e-06 17_[-1]_62 chr4:66610693-66610793 2.9e-06 58_[+1]_21 chr4:11879788-11879888 2.9e-06 52_[+1]_27 chr15:76771268-76771368 3.3e-06 31_[+1]_48 chr19:10367786-10367886 3.3e-06 54_[+1]_25 chr9:63091807-63091907 3.3e-06 65_[+1]_14 chr15:93748536-93748636 3.3e-06 68_[-1]_11 chr12:5254176-5254276 3.7e-06 61_[-1]_18 chr10:64215669-64215769 3.7e-06 69_[+1]_10 chrX:48174873-48174973 3.7e-06 18_[+1]_61 chr6:98551805-98551905 4.2e-06 8_[+1]_71 chr18:65102704-65102804 4.2e-06 56_[-1]_23 chr6:101173379-101173479 4.7e-06 [-1]_79 chr5:27326567-27326667 4.7e-06 75_[-1]_4 chr10:124249932-12425003 4.7e-06 1_[+1]_78 chr5:151059730-151059830 6e-06 71_[+1]_8 chr18:68167069-68167169 6.7e-06 72_[+1]_7 chr4:85324701-85324801 6.7e-06 44_[-1]_35 chr10:99081452-99081552 6.7e-06 21_[-1]_58 chr3:107159904-107160004 6.7e-06 71_[+1]_8 chr4:69254088-69254188 6.7e-06 54_[-1]_25 chr18:78306073-78306173 6.7e-06 64_[+1]_15 chr19:47305006-47305106 8.5e-06 41_[+1]_38 chr4:64068111-64068211 8.5e-06 48_[-1]_31 chr12:52748147-52748247 8.5e-06 46_[-1]_33 chr17:8727793-8727893 9.5e-06 11_[-1]_68 chr9:62476985-62477085 9.5e-06 49_[-1]_30 chr8:73313913-73314013 9.5e-06 11_[+1]_68 chr9:46703702-46703802 1.1e-05 52_[+1]_27 chr2:81006806-81006906 1.1e-05 45_[+1]_34 chr16:9886828-9886928 1.1e-05 6_[+1]_73 chr13:5621892-5621992 1.3e-05 25_[+1]_54 chrX:162698849-162698949 1.3e-05 47_[+1]_32 chr3:58240574-58240674 1.5e-05 51_[-1]_28 chr3:129588740-129588840 1.5e-05 25_[-1]_54 chr2:96717267-96717367 1.5e-05 75_[-1]_4 chr2:117450158-117450258 1.6e-05 38_[-1]_41 chr13:107407590-10740769 1.8e-05 16_[-1]_63 chr12:51058668-51058768 1.8e-05 32_[+1]_47 chr5:125752458-125752558 2e-05 76_[+1]_3 chr3:39527185-39527285 2.3e-05 64_[+1]_15 chr11:35004753-35004853 2.3e-05 25_[+1]_54 chr19:44372885-44372985 2.3e-05 4_[+1]_75 chr18:64772639-64772739 2.3e-05 2_[-1]_77 chr6:78280486-78280586 2.5e-05 68_[+1]_11 chr17:84113920-84114020 2.5e-05 17_[+1]_62 chr8:23780039-23780139 2.5e-05 44_[+1]_35 chr18:32970719-32970819 2.8e-05 39_[-1]_40 chr3:86841027-86841127 2.8e-05 53_[-1]_26 chr11:43865248-43865348 2.8e-05 35_[+1]_44 chr16:44210640-44210740 2.8e-05 31_[-1]_48 chr4:6037111-6037211 3.1e-05 79_[+1] chr1:97625425-97625525 3.1e-05 73_[+1]_6 chr3:105601071-105601171 3.1e-05 7_[-1]_72 chr4:140278221-140278321 3.4e-05 23_[-1]_56 chr8:28650377-28650477 3.4e-05 41_[-1]_38 chr15:30974933-30975033 3.4e-05 35_[-1]_44 chr1:193748035-193748135 3.4e-05 70_[-1]_9 chr6:59660997-59661097 3.4e-05 12_[+1]_67 chr14:9583551-9583651 4.2e-05 49_[+1]_30 chr5:36339232-36339332 4.2e-05 29_[-1]_50 chr16:27420901-27421001 4.2e-05 34_[-1]_45 chr4:82589441-82589541 4.6e-05 33_[+1]_46 chr7:74421845-74421945 4.6e-05 58_[-1]_21 chr16:37492558-37492658 4.6e-05 63_[-1]_16 chr2:33544781-33544881 4.6e-05 52_[+1]_27 chr8:66725303-66725403 4.6e-05 64_[-1]_15 chr13:42934772-42934872 5.1e-05 4_[-1]_75 chr1:189756298-189756398 5.1e-05 16_[+1]_63 chr19:32641479-32641579 5.6e-05 66_[-1]_13 chr16:24536213-24536313 5.6e-05 5_[+1]_74 chr9:113508871-113508971 5.6e-05 64_[-1]_15 chr14:76767907-76768007 5.6e-05 44_[-1]_35 chrX:109134690-109134790 5.6e-05 28_[+1]_51 chr5:31984577-31984677 6.2e-05 26_[+1]_53 chr7:75008450-75008550 6.2e-05 14_[-1]_65 chr13:5779410-5779510 6.2e-05 70_[+1]_9 chr4:104563512-104563612 6.2e-05 49_[-1]_30 chr1:190093295-190093395 6.2e-05 40_[+1]_39 chr5:147043149-147043249 6.8e-05 32_[+1]_47 chr8:109373760-109373860 6.8e-05 62_[-1]_17 chr1:158328190-158328290 6.8e-05 3_[+1]_76 chr6:52680370-52680470 6.8e-05 50_[-1]_29 chr2:57934024-57934124 7.4e-05 22_[+1]_57 chr18:86514380-86514480 7.4e-05 40_[-1]_39 chr4:70058813-70058913 7.4e-05 30_[-1]_49 chr17:45794854-45794954 8.2e-05 57_[-1]_22 chr18:40279227-40279327 8.2e-05 39_[+1]_40 chr3:117992314-117992414 8.2e-05 28_[-1]_51 chr4:82411989-82412089 0.00011 7_[-1]_72 chr5:149926700-149926800 0.00011 20_[-1]_59 chr9:93150051-93150151 0.00011 2_[+1]_77 chr10:102102503-10210260 0.00012 75_[-1]_4 chr6:95369363-95369463 0.00013 5_[-1]_74 chr14:86742456-86742556 0.00013 72_[+1]_7 chr8:32538456-32538556 0.00014 33_[-1]_46 chr19:21716579-21716679 0.00015 48_[-1]_31 chr9:97816864-97816964 0.00015 71_[-1]_8 chr9:101977048-101977148 0.00017 39_[-1]_40 chr5:45278513-45278613 0.00017 46_[-1]_33 chr5:4959144-4959244 0.00018 29_[-1]_50 chr1:38280476-38280576 0.00018 75_[-1]_4 chr11:81511338-81511438 0.00027 40_[+1]_39 chr13:107268909-10726900 0.00032 1_[+1]_78 chr1:43140825-43140925 0.00038 5_[+1]_74 chr19:28381374-28381474 0.00038 17_[-1]_62 chr3:99725838-99725938 0.00047 41_[+1]_38 chr3:149074571-149074671 0.00051 32_[+1]_47 chr2:9620491-9620591 0.00055 2_[+1]_77 chr1:127467121-127467221 0.00059 55_[+1]_24 chr1:138928714-138928814 0.00064 25_[-1]_54 chr1:88443933-88444033 0.0023 36_[+1]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDDKGRGGRDGDGKGGGAGGR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GDDKGRGGRDGDGKGGGAGGR width=21 seqs=164 chr5:112850986-112851086 ( 25) GAGGGGAAGGGGGGGGGAGGA 1 chr15:25269508-25269608 ( 2) GGGGGGGGGGGGGGGGGATGA 1 chr10:17095551-17095651 ( 51) GTGGGTGGGGGTGGGGGTGGG 1 chr2:43950210-43950310 ( 71) GAGGGAGGGAGAGAGGGAGGG 1 chr11:113971806-11397190 ( 28) GGAGGAGGGAGAGGAGGAGGG 1 chr3:5372787-5372887 ( 51) GTAGGGGAAAGAGGGGGAGGG 1 chr15:72377137-72377237 ( 31) GTTTAAGGGGGAGGGGGAGGG 1 chr6:144639304-144639404 ( 37) GAAGTGGGGTGGGTGGGATGA 1 chr2:90559739-90559839 ( 15) AGGTGTGGGGGTGGGGGTGGA 1 chr1:155608448-155608548 ( 30) CATGGAGGGAGGGAGGGAGGG 1 chr14:114567852-11456795 ( 20) GGGGGGTGGGGTGGGGGCGGT 1 chr10:108554989-10855508 ( 23) GATGTGGGAGGTGTGGGAGGT 1 chr16:85092683-85092783 ( 60) CAAAGGGGGAGGGTGGGTGGA 1 chr10:108927663-10892776 ( 44) AAGGAAGGGAGGGAGGGAGGG 1 chr17:66276705-66276805 ( 43) GAAGAGGAAAGGGAGGGAGGG 1 chr6:40074439-40074539 ( 49) GGAGGAAGAAGAGTAGGAGGA 1 chr16:4495797-4495897 ( 78) GAAGTGTAGGGAGTGGGAGGG 1 chr17:70629889-70629989 ( 24) AAGTGGGAGGGAGGAGGTGGG 1 chr18:65221214-65221314 ( 36) GTAGGCAGGAGAGTGGGAAGA 1 chr8:34499146-34499246 ( 62) GAACAGAGGTGTGTGGGTGGG 1 chr10:76648578-76648678 ( 13) GTGGGAAGGAGTGTGGGAAGT 1 chr14:117718878-11771897 ( 49) GAAGGGGGGTGGGCGGGAATA 1 chr13:39092170-39092270 ( 78) GAGGGAGAGGGAGAGGGAGAG 1 chr13:93241137-93241237 ( 80) GTAGGAGGGAAGGAGGGAGGA 1 chr3:40169194-40169294 ( 65) TACTGGGTGGGTGTGGGAGGA 1 chr2:49030181-49030281 ( 60) GAATGAGGATCTGTGGGAGGA 1 chr17:84323223-84323323 ( 25) GAGTGGGGAGGAATGGGAAGA 1 chr4:132946316-132946416 ( 79) GGGTGGGAGTGGGGCGGAGGA 1 chr18:57596113-57596213 ( 58) GAGGGAGGGTAAGTGGGCTGG 1 chr7:37809837-37809937 ( 5) TGAGGGTAGTGTGGAGGAGGA 1 chr8:48221262-48221362 ( 76) CGTGGGAGGAGGAGGGGAGGG 1 chr2:11429605-11429705 ( 61) AAGGAGGAGTGAGAGGGCGGG 1 chr12:27644958-27645058 ( 63) GAAGGCTGAGGAGGGTGAGGA 1 chr13:37415684-37415784 ( 20) TGTGTGGGGTGTGTAGGAGGC 1 chr12:72213393-72213493 ( 80) GATAGGAAGGGAGGGGGAGTG 1 chr13:68910104-68910204 ( 44) GAAGGGAAAGGTGGGGCTGGA 1 chr18:32410681-32410781 ( 13) GGGGGCGGAGGGGAGGGTAGA 1 chr3:85423141-85423241 ( 1) GTGTATGTGGGTGGGGCAGGA 1 chr16:90971625-90971725 ( 27) GTGCGTGGGTGTGTGTGTGGG 1 chr13:6998613-6998713 ( 36) GGGGGCGGAGGGGGGGGGGGC 1 chr4:46770500-46770600 ( 70) GTGGGTGGGTGAGTATGTGGC 1 chr9:62783160-62783260 ( 22) GAGAGGAGCTGCGGGGGAGGC 1 chr15:43446518-43446618 ( 80) GATTGGGTGGAGGTGGGAGGT 1 chr1:90289831-90289931 ( 3) GGTGGGGGTGGGGTGGGAAGG 1 chr4:136494089-136494189 ( 7) GTGTGGGTGTGAGGAGGATGT 1 chr3:107796160-107796260 ( 50) AGTGGCGGGGGTGGAGGAGAG 1 chr14:119489222-11948932 ( 2) ATAGTGTGGTGTGGGGGATGG 1 chr4:137200303-137200403 ( 38) CTGGACATGTGAGTGGGTGGG 1 chr15:30890539-30890639 ( 16) AAATAGGGATGTGTAGGTGGC 1 chr6:35482416-35482516 ( 13) GATGCCAGGTGAGGGGGAGAA 1 chr4:66157403-66157503 ( 27) GAGTCAAGAGGTGGGGGAGAG 1 chr14:64595117-64595217 ( 63) GTTCAGGAATGTGGGGGAAGA 1 chrX:13347268-13347368 ( 18) GAGTTGAGAGGTGGGGGCGAA 1 chr4:66610693-66610793 ( 59) CAAGAAAGGAGTGTAGGAAGC 1 chr4:11879788-11879888 ( 53) ATTGGACTGAGTGTGGGAGGA 1 chr15:76771268-76771368 ( 32) GTGTGAGTGTGTGTGTGTGTG 1 chr19:10367786-10367886 ( 55) GAAGGTGGAAGAGAAGCAGGG 1 chr9:63091807-63091907 ( 66) AAGGAAGAAAGCGTAGGAGGA 1 chr15:93748536-93748636 ( 69) GAAGGGGTGAGAGAGTGAGTC 1 chr12:5254176-5254276 ( 62) CAGGCCGAGAGAGGAGGATGA 1 chr10:64215669-64215769 ( 70) CTTTAGGGATGTGGGGGACGG 1 chrX:48174873-48174973 ( 19) GTGTGCATGTGGGTGTGTGGG 1 chr6:98551805-98551905 ( 9) AGTTATGGGTGGGGGGCAGGG 1 chr18:65102704-65102804 ( 57) CGGGAAGGCTGTGTGGGCAGA 1 chr6:101173379-101173479 ( 1) GTGTGTGTGTGTGTGTGTGTA 1 chr5:27326567-27326667 ( 76) GATGGAGTGGGTGGTGGAGAC 1 chr10:124249932-12425003 ( 2) GGAAAGTGGTGTGTAGGAGGT 1 chr5:151059730-151059830 ( 72) GTTGGCGTGTGGGGGTGTTGA 1 chr18:68167069-68167169 ( 73) AAATGAATGAGTGTGGGTTGA 1 chr4:85324701-85324801 ( 45) GAGTAGGGATGTGGTTGAGTA 1 chr10:99081452-99081552 ( 22) GGAGAGGTGAGGAGAGGCGGA 1 chr3:107159904-107160004 ( 72) GAGAGAGGGCGCGGGGGCGGC 1 chr4:69254088-69254188 ( 55) GATGGTGTGTGGGAAGGTGTG 1 chr18:78306073-78306173 ( 65) GGGTGTGTGTGAGTGTGTGTA 1 chr19:47305006-47305106 ( 42) CTGCTGGGGAGTGGGGGCTGC 1 chr4:64068111-64068211 ( 49) GAGGAGAGAAATGGAGGCAGA 1 chr12:52748147-52748247 ( 47) GTCTCAGAGAGAGTAGGAGGA 1 chr17:8727793-8727893 ( 12) GAGCGGAGAAGTAGAGGCGGG 1 chr9:62476985-62477085 ( 50) GCAGGGCGGTGGGGGTGTGGA 1 chr8:73313913-73314013 ( 12) CTGTGGCAGTATGGAGGAGGA 1 chr9:46703702-46703802 ( 53) AGAGGGTGCGATGTGGGAGGC 1 chr2:81006806-81006906 ( 46) CGGGGAAAGAGAGTAGGAAGT 1 chr16:9886828-9886928 ( 7) CAGTGGGGAGGTATGAGAGGA 1 chr13:5621892-5621992 ( 26) GGATAAGAAAGTGGAGGCAGA 1 chrX:162698849-162698949 ( 48) CATCAGAGGTGCGGAGGTGGA 1 chr3:58240574-58240674 ( 52) GCAAGGGGGTGGGGTGGAGTA 1 chr3:129588740-129588840 ( 26) TTTTGTGGGTGTGTGTGAGTC 1 chr2:96717267-96717367 ( 76) TAAGGAATGTAGGTGGGAAGA 1 chr2:117450158-117450258 ( 39) ATATGGGTAAGAGGAGGTGTG 1 chr13:107407590-10740769 ( 17) CGGGATGGGAAAGGGGGCTGC 1 chr12:51058668-51058768 ( 33) AAGGAATAATGAGGAGGAAGG 1 chr5:125752458-125752558 ( 77) TTTAAAGGGAGTATGGGAGGA 1 chr3:39527185-39527285 ( 65) GGGGGTAGATGTGAAGCATGG 1 chr11:35004753-35004853 ( 26) GATTAGATAAGAGGGAGAGGA 1 chr19:44372885-44372985 ( 5) CAGGGTAGATGGGCAGGTGTA 1 chr18:64772639-64772739 ( 3) TTTTAAATGAGAGGGGGAGGT 1 chr6:78280486-78280586 ( 69) GTGGTGGGAAGAATGTGAAGA 1 chr17:84113920-84114020 ( 18) CTTGGGGAGGGAGGAGGCCGC 1 chr8:23780039-23780139 ( 45) CTGTGGGAGTACGGGGGTTGC 1 chr18:32970719-32970819 ( 40) ATTGCTTGATGTGTGGGAAGA 1 chr3:86841027-86841127 ( 54) GAGTCAGAACGTGGGGGAGTC 1 chr11:43865248-43865348 ( 36) AAGTCTTGGTGTGTGGGAAGT 1 chr16:44210640-44210740 ( 32) GAGGACAGGGCTGAAGGATGA 1 chr4:6037111-6037211 ( 80) GTGTGGGTGTGAGTATGATAA 1 chr1:97625425-97625525 ( 74) GCAGGCGAGGGGGAAGGAAGC 1 chr3:105601071-105601171 ( 8) TAGGTGGCAAGTGTAGGATGA 1 chr4:140278221-140278321 ( 24) GGCTGGGAAGCAGTGGGTGGC 1 chr8:28650377-28650477 ( 42) GTAGGGTCGGGTGCGGGCAGA 1 chr15:30974933-30975033 ( 36) CACTGCAGAGGAGTGGGCGTG 1 chr1:193748035-193748135 ( 71) GTGGGAACATGTGAGGGCTGA 1 chr6:59660997-59661097 ( 13) TTGGCACAATGTGTGGGAGGC 1 chr14:9583551-9583651 ( 50) GGGGGTGGAAGAGGCAGAGGG 1 chr5:36339232-36339332 ( 30) TAAATGTGAAATGGGGGAGGA 1 chr16:27420901-27421001 ( 35) CAGGAGAAGAGTGGAGGAAAT 1 chr4:82589441-82589541 ( 34) CTGAGGAAAAGTGGGTCAGGA 1 chr7:74421845-74421945 ( 59) TGGTGGGTGTGAGCTGGTGGC 1 chr16:37492558-37492658 ( 64) GATGGGGGCGGTGCATGCAGG 1 chr2:33544781-33544881 ( 53) GACGTCGGAGGTGGTGGTGGT 1 chr8:66725303-66725403 ( 65) AAACCTGTGTGTAGGGGAGGA 1 chr13:42934772-42934872 ( 5) TAGGACGGATGACGGGGAAGG 1 chr1:189756298-189756398 ( 17) CGTGGGTGGAGTGGGGTAAGA 1 chr19:32641479-32641579 ( 67) TGGGTGCAATGTGGAGGAAGG 1 chr16:24536213-24536313 ( 6) GAGTGTGGGAGGACAGGCAGA 1 chr9:113508871-113508971 ( 65) CTTGGAAGGAGTGGGTGAATT 1 chr14:76767907-76768007 ( 45) GAATTGCAATGAGTAGGAGTG 1 chrX:109134690-109134790 ( 29) GAATATGGGGGTGGTGGTTAG 1 chr5:31984577-31984677 ( 27) TATTTTGGGTGGGAGGCAGGC 1 chr7:75008450-75008550 ( 15) ACAGAAGGATCTGGAGGAGGG 1 chr13:5779410-5779510 ( 71) AAAAGATAGAGTGTGGGATTG 1 chr4:104563512-104563612 ( 50) TAGGGATTGTGGGTGGGACTG 1 chr1:190093295-190093395 ( 41) AGCAGTAGGAGAGGAGGAAGG 1 chr5:147043149-147043249 ( 33) GAGTGAACGTGGGCAGGAGAG 1 chr8:109373760-109373860 ( 63) AGAAAAGGGAATGTGGGTGTA 1 chr1:158328190-158328290 ( 4) CAAGGGAGAGAGATGGGAGAG 1 chr6:52680370-52680470 ( 51) CTGAGAGGATCAGTGGGTGGT 1 chr2:57934024-57934124 ( 23) AAGGAGGGGTATGGTTGAGTC 1 chr18:86514380-86514480 ( 41) CTCTGGTGGGGTGTGGGTTTC 1 chr4:70058813-70058913 ( 31) CGGGCCGGCTCGGAGGGAGGA 1 chr17:45794854-45794954 ( 58) TGAGTAATGGGAAGAGGAGGG 1 chr18:40279227-40279327 ( 40) CAAGTTGTATGTAAGGGTGGG 1 chr3:117992314-117992414 ( 29) GTGGCAGACGAGGTGGCAGGG 1 chr4:82411989-82412089 ( 8) GTTTATGTGTCTGGGGCTGGA 1 chr5:149926700-149926800 ( 21) ATGGTGAGGAGGATGTGAGTG 1 chr9:93150051-93150151 ( 3) CATCAGTTCTGGGTAGGAGGA 1 chr10:102102503-10210260 ( 76) TAGGTGTAGAATGTGGGAGTT 1 chr6:95369363-95369463 ( 6) GGAATTGAGTGTGTAGGATAA 1 chr14:86742456-86742556 ( 73) GAAGACATGAGCGTGGGGAGA 1 chr8:32538456-32538556 ( 34) GATTTCAGAGGCGTGGCATGG 1 chr19:21716579-21716679 ( 49) ATTTGGATGTAGGCGTGAGGA 1 chr9:97816864-97816964 ( 72) GGAGGCAGTGGTGTTGGTGTA 1 chr9:101977048-101977148 ( 40) GGGTGCAATTGTGGGTGTAGA 1 chr5:45278513-45278613 ( 47) GATTCTGGGGGCGGTTGATGA 1 chr5:4959144-4959244 ( 30) CTTAGCGAGTAAGTGGGTGTC 1 chr1:38280476-38280576 ( 76) ATATATAAAAATGTGGGATGG 1 chr11:81511338-81511438 ( 41) GATCCGGGAGATGGTGGTGTG 1 chr13:107268909-10726900 ( 2) CAGAAAAACGGCGTAGGATGG 1 chr1:43140825-43140925 ( 6) GAGCGAGGCAGGGGAAGAGAC 1 chr19:28381374-28381474 ( 18) TGCGGTTTCGGAGTGGGATGC 1 chr3:99725838-99725938 ( 42) GTATATTTGTGGGAGGGTAAA 1 chr3:149074571-149074671 ( 33) GCTGTGGCGTGTGTGGCACGG 1 chr2:9620491-9620591 ( 3) CGAAGGGAGCGAGTGGCTTGC 1 chr1:127467121-127467221 ( 56) TGAGAAGAAAGCGCAGGCGTA 1 chr1:138928714-138928814 ( 26) CATTGCGACGGAATGGCAGTG 1 chr1:88443933-88444033 ( 37) GTGGAGGAGGACCGATGCGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDDKGRGGRDGDGKGGGAGGR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.68109 E= 3.0e-102 -88 -17 129 -128 70 -284 8 0 6 -216 98 -32 -144 -184 128 12 -21 -146 133 -113 -13 -71 98 -67 -10 -258 140 -121 -17 -284 126 -53 12 -171 148 -394 9 -358 39 50 -121 -236 193 -1400 -4 -171 4 62 -172 -416 204 -1400 -128 -200 96 52 3 -416 155 -220 -353 -1400 193 -100 -1400 -146 206 -552 117 -84 -416 -28 -62 -316 154 -83 -172 -1400 177 -72 54 -41 62 -162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDDKGRGGRDGDGKGGGAGGR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 164 E= 3.0e-102 0.152439 0.195122 0.536585 0.115854 0.457317 0.030488 0.231707 0.280488 0.292683 0.048780 0.432927 0.225610 0.103659 0.060976 0.530488 0.304878 0.243902 0.079268 0.548780 0.128049 0.256098 0.134146 0.432927 0.176829 0.262195 0.036585 0.579268 0.121951 0.250000 0.030488 0.524390 0.195122 0.304878 0.067073 0.609756 0.018293 0.298780 0.018293 0.286585 0.396341 0.121951 0.042683 0.835366 0.000000 0.274390 0.067073 0.225610 0.432927 0.085366 0.012195 0.902439 0.000000 0.115854 0.054878 0.426829 0.402439 0.286585 0.012195 0.640244 0.060976 0.024390 0.000000 0.835366 0.140244 0.000000 0.079268 0.914634 0.006098 0.634146 0.121951 0.012195 0.231707 0.182927 0.024390 0.634146 0.158537 0.085366 0.000000 0.743902 0.170732 0.408537 0.164634 0.335366 0.091463 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDDKGRGGRDGDGKGGGAGGR MEME-1 regular expression -------------------------------------------------------------------------------- G[ATG][GAT][GT][GA][GA][GA][GA][GA][TAG]G[TAG]G[GT][GA]GG[AT]GG[AG] -------------------------------------------------------------------------------- Time 325.71 secs. ******************************************************************************** ******************************************************************************** MOTIF KRCCACWAGRKGGCRSYMNNVVCH MEME-2 width = 24 sites = 47 llr = 648 E-value = 6.8e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif KRCCACWAGRKGGCRSYMNNVVCH MEME-2 Description -------------------------------------------------------------------------------- Simplified A :31:8:3a:4:::161:6233423 pos.-specific C 1179182:1::::8:443222354 probability G 35::12::965a9:4411324211 matrix T 5121::5:::5:1::15:331122 bits 2.2 * 2.0 * 1.8 ** ** 1.5 * ** ** Relative 1.3 * * ** *** Entropy 1.1 * * *** **** (19.9 bits) 0.9 **** ******** 0.7 **** ******** 0.4 * **************** * 0.2 ****************** **** 0.0 ------------------------ Multilevel TGCCACTAGGGGGCACTAGAGACC consensus GA GA AT GGCCTTAC A sequence C C C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRCCACWAGRKGGCRSYMNNVVCH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chr1:81316541-81316641 + 25 2.36e-11 GGTTTTGTGC TGCCACAAGGGGGCAGTATTGCCT CAGCGTTTCC chr9:87708096-87708196 + 53 2.05e-10 AACCAAGGTA GGCCAGTAGGGGGCAGCACTGACT GCTTGTTCAG chr2:59541418-59541518 + 46 9.97e-10 GTTTTCCGCT AACCACTAGGGGGCAGTACAGACC AACCAAAGGT chr5:24266565-24266665 + 57 1.60e-09 TGTATCATGC GGCCACCAGATGGCGCCCAACACC TCAAACTGTC chr11:93812456-93812556 - 21 1.86e-09 GTCCCATCAC TGCCACAAGATGGCAGTCATACCA CAATGATGAA chrX:104179237-104179337 + 6 2.16e-09 ATTCT GGCCAGTAGGTGGCACCACAGATA GATGGCTATT chr4:142880416-142880516 - 44 2.90e-09 TGTGGTAGAT GGCCAGAAGGGGGCACTCTTCCCT TACCACTCAG chr2:158204083-158204183 - 23 5.09e-09 TGACCTGGAG TTCCACCAGGGGGCGCTGTGGGCC CATGCTCACC chr6:41112807-41112907 + 44 9.86e-09 TTGCACAGCT GATCACTAGGTGGCGCTGTGGACC CACTGGCATT chr6:135400249-135400349 - 66 1.44e-08 AAACCAATGT GGCCACTAGGGGGCAGAGTTGCAC TAACAACGTC chr1:118759520-118759620 - 33 2.07e-08 GAACTTGTCT TGCCAGCAGGTGGCAGTAGATGGC CAGAAATGAG chr15:50261431-50261531 - 50 2.07e-08 TTTCAGTCAT TCCCAGTAGATGGCGCCAGAGAGA AGTCAGCAGC chr1:9100755-9100855 - 55 2.62e-08 TACATTCACA TGCCAGAAGAGGGCATCAGATCCC CTTATAGATG chr6:7732992-7733092 + 47 3.70e-08 TAAAATCACT GCCCACCAGGTGGCAGTCatggta cagtagctct chr5:48430429-48430529 + 30 4.64e-08 TGTCATGTTG AGGCACAAGGGGGCAGTAGTGCCC TCTATGTTAA chr3:104992683-104992783 + 37 7.16e-08 GTCCACGTCC GAACACCAGGGGGCGCGAGCAACC TAGCTTTCGG chr13:30084954-30085054 - 22 8.84e-08 CCTCACGATC CACCACAAGAGGGCGGTCATCAAA AGCGAGTGAA chr8:10053410-10053510 + 16 1.09e-07 TTATAGTAGT TGCCACTAGGTGGGGGCAGCACAG CAGTTGCTTC chr10:69593201-69593301 - 18 1.09e-07 ATCCAAACAT TGCTACTAGGTGGGACCAGTCACA TCTCTTGCAA chr19:44372885-44372985 + 68 1.20e-07 GGTCTTCATG TACCACAAGGGGGCGCCTATGATT GCAAGATGG chr5:67532319-67532419 + 17 1.33e-07 ACAGGCAAAC TTCCGCTAGAGGGCGGCCTCAGAC TGCATGATAC chr14:47597757-47597857 + 37 1.47e-07 GGAAAGACTG TTTCACTAGGGGGCGCTCTGTCTC CTCTCTCAAA chr1:117122935-117123035 - 29 1.79e-07 CTATTCCCTC TCCCACTAGATGGCATTTTCCCCC CATGTTGCTG chr13:81471329-81471429 - 57 1.79e-07 TCTTCAGACA CACCAGAAGATGGCACCGGATACC AGATGGTTGT chr2:139966257-139966357 - 38 1.98e-07 GTATGGAAGT GTCCACAAGGGGGCGTGCTCACCC AGAGAAATAT chr3:149349334-149349434 - 55 2.18e-07 CTGCGGCCAC GGTCAATAGGTGGCGCTCTTCCCA CTGAGTCAGG chr10:113106075-11310617 + 37 2.63e-07 GGATTACCTC TACCACAAGAGGGTGGTATGAATC TTTAGATGGC chr2:139589882-139589982 - 20 2.63e-07 GATAGTAGTA GGCCTCCAGGGGGCGCTAGGAGTT GAGCCCTGAC chr8:46934885-46934985 + 8 2.89e-07 CCTCTTT CCCCACTAGAGGGCAGAGTTCACA TCTGCTCCCG chr1:52299556-52299656 + 5 3.48e-07 TGTC TTCCACTAGATGGCATTGGAAGAA CATGGCACAT chr3:58163709-58163809 + 19 3.48e-07 tttgacgctt catcagtagagggcgctaaagaga cactacagga chr2:132970679-132970779 + 35 4.17e-07 TACCAATGAT TCCCACTAGATGTCACTATTGCTG TTTGTTAATT chr14:47751373-47751473 + 28 4.17e-07 TCACGAGTTC CGTCACTAGGGGGAGGTAACAGAC AGTGCATATA chr9:41474568-41474668 + 31 4.56e-07 GCTCAGCATC TCCCACTAGGGGGAGCCCCCGGAG GGCAGCTGGG chrX:85481298-85481398 - 13 4.56e-07 TCTGTCTTTA TACCAGCAGGGGGAGACAGACACT AAAACAAGAA chr5:101020744-101020844 + 30 5.94e-07 TGGGGCTCAC TACCACTGGGTGTCGCTACAGGCA GCCTGCTAGT chr18:28077669-28077769 - 54 7.06e-07 TGCCTCGTTT GGTCCCTAGATGGCAGCAGGATGC CGAAGCTCGG chr15:11496412-11496512 + 17 7.68e-07 TCATCTTCGC GGCAGCTAGATGGCACCCCTGTCT TTTAACATTT chr4:44199904-44200004 + 53 9.09e-07 TACAATATGC TGCCACCAGGTGGCAAGAGCATGT TATGGCTATG chr9:34580037-34580137 + 41 9.09e-07 CTTCTACAAA TGAAGCCAGATGGCACCAGAGCCT CCTTTAGTGG chr8:95974815-95974915 + 51 9.88e-07 TTCTCCTTCC TGACGCTAGAGGTCACTCAGACCC TGTCTTTAAC chr17:10807548-10807648 - 28 1.07e-06 ATGCTGCCTA CGCTCCCAGATGGCAGTACCCACT TAGACACGCC chr16:51160411-51160511 + 57 1.87e-06 CACCATCTCT GTTTACAAGGTGGCAGTACAGTAC AAGTGTCTCA chr18:65102704-65102804 - 13 2.73e-06 GTGTGGGCAG CACCCCAACGTGGCGATAGTACCA GGAAGGCTGA chr17:8727793-8727893 + 36 3.17e-06 TCCGCTCGCA TGTCGGCAGGAGGCAGTCCAGATA TAGTCTGCTG chr17:30283620-30283720 + 59 6.38e-06 CTGTTCCTCC TGCCACTACATGCTAGCACACACA CATAGCCTAC chr2:63266810-63266910 - 31 8.31e-06 CGTGAGATGA TAACGCTACGGGGAAGCATGACAC TTTAAATTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRCCACWAGRKGGCRSYMNNVVCH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:81316541-81316641 2.4e-11 24_[+2]_52 chr9:87708096-87708196 2.1e-10 52_[+2]_24 chr2:59541418-59541518 1e-09 45_[+2]_31 chr5:24266565-24266665 1.6e-09 56_[+2]_20 chr11:93812456-93812556 1.9e-09 20_[-2]_56 chrX:104179237-104179337 2.2e-09 5_[+2]_71 chr4:142880416-142880516 2.9e-09 43_[-2]_33 chr2:158204083-158204183 5.1e-09 22_[-2]_54 chr6:41112807-41112907 9.9e-09 43_[+2]_33 chr6:135400249-135400349 1.4e-08 65_[-2]_11 chr1:118759520-118759620 2.1e-08 32_[-2]_44 chr15:50261431-50261531 2.1e-08 49_[-2]_27 chr1:9100755-9100855 2.6e-08 54_[-2]_22 chr6:7732992-7733092 3.7e-08 46_[+2]_30 chr5:48430429-48430529 4.6e-08 29_[+2]_47 chr3:104992683-104992783 7.2e-08 36_[+2]_40 chr13:30084954-30085054 8.8e-08 21_[-2]_55 chr8:10053410-10053510 1.1e-07 15_[+2]_61 chr10:69593201-69593301 1.1e-07 17_[-2]_59 chr19:44372885-44372985 1.2e-07 67_[+2]_9 chr5:67532319-67532419 1.3e-07 16_[+2]_60 chr14:47597757-47597857 1.5e-07 36_[+2]_40 chr1:117122935-117123035 1.8e-07 28_[-2]_48 chr13:81471329-81471429 1.8e-07 56_[-2]_20 chr2:139966257-139966357 2e-07 37_[-2]_39 chr3:149349334-149349434 2.2e-07 54_[-2]_22 chr10:113106075-11310617 2.6e-07 36_[+2]_40 chr2:139589882-139589982 2.6e-07 19_[-2]_57 chr8:46934885-46934985 2.9e-07 7_[+2]_69 chr1:52299556-52299656 3.5e-07 4_[+2]_72 chr3:58163709-58163809 3.5e-07 18_[+2]_58 chr2:132970679-132970779 4.2e-07 34_[+2]_42 chr14:47751373-47751473 4.2e-07 27_[+2]_49 chr9:41474568-41474668 4.6e-07 30_[+2]_46 chrX:85481298-85481398 4.6e-07 12_[-2]_64 chr5:101020744-101020844 5.9e-07 29_[+2]_47 chr18:28077669-28077769 7.1e-07 53_[-2]_23 chr15:11496412-11496512 7.7e-07 16_[+2]_60 chr4:44199904-44200004 9.1e-07 52_[+2]_24 chr9:34580037-34580137 9.1e-07 40_[+2]_36 chr8:95974815-95974915 9.9e-07 50_[+2]_26 chr17:10807548-10807648 1.1e-06 27_[-2]_49 chr16:51160411-51160511 1.9e-06 56_[+2]_20 chr18:65102704-65102804 2.7e-06 12_[-2]_64 chr17:8727793-8727893 3.2e-06 35_[+2]_41 chr17:30283620-30283720 6.4e-06 58_[+2]_18 chr2:63266810-63266910 8.3e-06 30_[-2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRCCACWAGRKGGCRSYMNNVVCH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KRCCACWAGRKGGCRSYMNNVVCH width=24 seqs=47 chr1:81316541-81316641 ( 25) TGCCACAAGGGGGCAGTATTGCCT 1 chr9:87708096-87708196 ( 53) GGCCAGTAGGGGGCAGCACTGACT 1 chr2:59541418-59541518 ( 46) AACCACTAGGGGGCAGTACAGACC 1 chr5:24266565-24266665 ( 57) GGCCACCAGATGGCGCCCAACACC 1 chr11:93812456-93812556 ( 21) TGCCACAAGATGGCAGTCATACCA 1 chrX:104179237-104179337 ( 6) GGCCAGTAGGTGGCACCACAGATA 1 chr4:142880416-142880516 ( 44) GGCCAGAAGGGGGCACTCTTCCCT 1 chr2:158204083-158204183 ( 23) TTCCACCAGGGGGCGCTGTGGGCC 1 chr6:41112807-41112907 ( 44) GATCACTAGGTGGCGCTGTGGACC 1 chr6:135400249-135400349 ( 66) GGCCACTAGGGGGCAGAGTTGCAC 1 chr1:118759520-118759620 ( 33) TGCCAGCAGGTGGCAGTAGATGGC 1 chr15:50261431-50261531 ( 50) TCCCAGTAGATGGCGCCAGAGAGA 1 chr1:9100755-9100855 ( 55) TGCCAGAAGAGGGCATCAGATCCC 1 chr6:7732992-7733092 ( 47) GCCCACCAGGTGGCAGTCATGGTA 1 chr5:48430429-48430529 ( 30) AGGCACAAGGGGGCAGTAGTGCCC 1 chr3:104992683-104992783 ( 37) GAACACCAGGGGGCGCGAGCAACC 1 chr13:30084954-30085054 ( 22) CACCACAAGAGGGCGGTCATCAAA 1 chr8:10053410-10053510 ( 16) TGCCACTAGGTGGGGGCAGCACAG 1 chr10:69593201-69593301 ( 18) TGCTACTAGGTGGGACCAGTCACA 1 chr19:44372885-44372985 ( 68) TACCACAAGGGGGCGCCTATGATT 1 chr5:67532319-67532419 ( 17) TTCCGCTAGAGGGCGGCCTCAGAC 1 chr14:47597757-47597857 ( 37) TTTCACTAGGGGGCGCTCTGTCTC 1 chr1:117122935-117123035 ( 29) TCCCACTAGATGGCATTTTCCCCC 1 chr13:81471329-81471429 ( 57) CACCAGAAGATGGCACCGGATACC 1 chr2:139966257-139966357 ( 38) GTCCACAAGGGGGCGTGCTCACCC 1 chr3:149349334-149349434 ( 55) GGTCAATAGGTGGCGCTCTTCCCA 1 chr10:113106075-11310617 ( 37) TACCACAAGAGGGTGGTATGAATC 1 chr2:139589882-139589982 ( 20) GGCCTCCAGGGGGCGCTAGGAGTT 1 chr8:46934885-46934985 ( 8) CCCCACTAGAGGGCAGAGTTCACA 1 chr1:52299556-52299656 ( 5) TTCCACTAGATGGCATTGGAAGAA 1 chr3:58163709-58163809 ( 19) CATCAGTAGAGGGCGCTAAAGAGA 1 chr2:132970679-132970779 ( 35) TCCCACTAGATGTCACTATTGCTG 1 chr14:47751373-47751473 ( 28) CGTCACTAGGGGGAGGTAACAGAC 1 chr9:41474568-41474668 ( 31) TCCCACTAGGGGGAGCCCCCGGAG 1 chrX:85481298-85481398 ( 13) TACCAGCAGGGGGAGACAGACACT 1 chr5:101020744-101020844 ( 30) TACCACTGGGTGTCGCTACAGGCA 1 chr18:28077669-28077769 ( 54) GGTCCCTAGATGGCAGCAGGATGC 1 chr15:11496412-11496512 ( 17) GGCAGCTAGATGGCACCCCTGTCT 1 chr4:44199904-44200004 ( 53) TGCCACCAGGTGGCAAGAGCATGT 1 chr9:34580037-34580137 ( 41) TGAAGCCAGATGGCACCAGAGCCT 1 chr8:95974815-95974915 ( 51) TGACGCTAGAGGTCACTCAGACCC 1 chr17:10807548-10807648 ( 28) CGCTCCCAGATGGCAGTACCCACT 1 chr16:51160411-51160511 ( 57) GTTTACAAGGTGGCAGTACAGTAC 1 chr18:65102704-65102804 ( 13) CACCCCAACGTGGCGATAGTACCA 1 chr17:8727793-8727893 ( 36) TGTCGGCAGGAGGCAGTCCAGATA 1 chr17:30283620-30283720 ( 59) TGCCACTACATGCTAGCACACACA 1 chr2:63266810-63266910 ( 31) TAACGCTACGGGGAAGCATGACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRCCACWAGRKGGCRSYMNNVVCH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 46200 bayes= 11.0224 E= 6.8e-052 -272 -55 44 86 -14 -78 116 -114 -172 172 -336 -72 -272 203 -1220 -214 148 -178 -78 -372 -372 181 -4 -1220 -14 10 -1220 86 180 -1220 -336 -1220 -1220 -178 210 -1220 52 -1220 144 -1220 -372 -1220 116 80 -1220 -1220 219 -1220 -1220 -336 206 -214 -172 192 -236 -272 103 -1220 96 -1220 -214 96 96 -172 -272 73 -178 92 98 34 -78 -272 -72 -4 54 8 18 -19 -36 18 8 -4 89 -172 45 64 -19 -172 -55 128 -104 -72 8 96 -178 -40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRCCACWAGRKGGCRSYMNNVVCH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 47 E= 6.8e-052 0.042553 0.148936 0.297872 0.510638 0.255319 0.127660 0.489362 0.127660 0.085106 0.723404 0.021277 0.170213 0.042553 0.893617 0.000000 0.063830 0.787234 0.063830 0.127660 0.021277 0.021277 0.765957 0.212766 0.000000 0.255319 0.234043 0.000000 0.510638 0.978723 0.000000 0.021277 0.000000 0.000000 0.063830 0.936170 0.000000 0.404255 0.000000 0.595745 0.000000 0.021277 0.000000 0.489362 0.489362 0.000000 0.000000 1.000000 0.000000 0.000000 0.021277 0.914894 0.063830 0.085106 0.829787 0.042553 0.042553 0.574468 0.000000 0.425532 0.000000 0.063830 0.425532 0.425532 0.085106 0.042553 0.361702 0.063830 0.531915 0.553191 0.276596 0.127660 0.042553 0.170213 0.212766 0.319149 0.297872 0.319149 0.191489 0.170213 0.319149 0.297872 0.212766 0.404255 0.085106 0.382979 0.340426 0.191489 0.085106 0.191489 0.531915 0.106383 0.170213 0.297872 0.425532 0.063830 0.212766 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRCCACWAGRKGGCRSYMNNVVCH MEME-2 regular expression -------------------------------------------------------------------------------- [TG][GA]CCA[CG][TAC]AG[GA][GT]GGC[AG][CG][TC][AC][GTC][AT][GAC][AC]C[CAT] -------------------------------------------------------------------------------- Time 607.86 secs. ******************************************************************************** ******************************************************************************** MOTIF KGCTGCTGWG MEME-3 width = 10 sites = 108 llr = 927 E-value = 1.4e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGCTGCTGWG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::3::2:31 pos.-specific C ::a::a:213 probability G 3a::a:1726 matrix T 5::7::714: bits 2.2 * * 2.0 ** ** 1.8 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ** ** (12.4 bits) 0.9 ***** * * 0.7 ******* * 0.4 ******** * 0.2 ******** * 0.0 ---------- Multilevel TGCTGCTGTG consensus G A CAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCTGCTGWG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------- chr1:11788197-11788297 - 13 6.88e-07 CTGTTGCTTA TGCTGCTGTG TTAAATTGTA chr10:108554989-10855508 - 76 6.88e-07 GGCCAGTGGG TGCTGCTGTG GACTTCTCAT chr16:73647182-73647282 + 4 6.88e-07 ACA TGCTGCTGTG TTTATGAAAG chr18:28077669-28077769 + 28 6.88e-07 GACCTGAACA TGCTGCTGTG AGCTGCCCGA chr1:151138297-151138397 - 11 1.22e-06 TCAGGAGACC GGCTGCTGTG TGGTTCTTAT chr10:43001104-43001204 + 4 1.22e-06 tga gGCTGCTGTG CGTGTGTTTA chr5:66798187-66798287 + 36 1.22e-06 TCTGAATTGA GGCTGCTGTG AAATCTGAGA chr15:50806655-50806755 + 54 1.91e-06 ATGGAATCTA TGCTGCTGAG CCCAAATATA chr8:79082622-79082722 + 22 1.91e-06 Attttttgtg tgctgctgag ccttatgcat chr14:20873215-20873315 + 39 2.98e-06 ATGTTCTGCC TGCTGCTGGG CCCTGTTTTT chr13:112758506-11275860 + 11 2.98e-06 ccacacccac tgctgctggg aatggaaaaa chr3:85495494-85495594 - 37 5.31e-06 TCCTCTAGGT GGCTGCTGGG TCTCTCTGGC chr10:99322519-99322619 + 38 6.69e-06 tcatgggtgt tgctgctctg acgtttctag chr2:45181512-45181612 + 50 6.69e-06 GGTTTGCTGT AGCTGCTGTG TCTGAGCCGA chr15:95460097-95460197 + 21 6.69e-06 CACTCAGAGA AGCTGCTGTG GCTCCTTCTC chr3:39965383-39965483 - 31 6.69e-06 AGGCAGCCAC AGCTGCTGTG TTCATGAGTG chr9:56505010-56505110 + 20 6.69e-06 CGGCTTCGCC TGCTGCTCTG GTTTCTTCTT chr13:68624672-68624772 - 56 8.45e-06 CTACCCACAA GGCAGCTGTG TCCCCTAGAG chr2:122971586-122971686 + 4 8.45e-06 CCT GGCTGCTGTC CTTATTTGGC chr11:13080706-13080806 + 30 1.02e-05 gtttaatata tgcagctgag tgagaagaca chr17:27392800-27392900 + 7 1.02e-05 GCCTGC TGCTGCTGAC GGTGACATCA chr15:50261431-50261531 + 39 1.02e-05 TTCAAGATGC TGCTGCTGAC TTCTCTCTGG chr18:65102704-65102804 - 79 1.13e-05 AGGCTGCTGG GGCTGCTCTG GCGGGAAGGC chr2:158204083-158204183 + 7 1.13e-05 GCAAAG TGCTGCGGTG AGCATGGGCC chr17:70629889-70629989 + 2 1.32e-05 C AGCTGCTGAG ACCATGTCTA chr10:111539847-11153994 - 41 1.32e-05 GGAGAAGCCA GGCTGCAGTG GGCGGCACAG chr14:121826063-12182616 + 76 1.32e-05 aagactccaa agctgctgag agagctagaa chr11:20987659-20987759 - 27 1.61e-05 TTCTCACACG GGCTGCTGAC ACTGAGCTGT chr10:66631045-66631145 - 33 1.61e-05 TATGGCTCTG TGCTGCAGAG CTCTGGCAAG chr1:119221775-119221875 - 61 1.93e-05 TCATCTGTTC TGCTGCGGAG GCATTCCTTA chrX:13347268-13347368 + 57 1.93e-05 ATCAGGGCAG TGCTGCGGAG GCTCCATGAT chr13:95286950-95287050 + 27 2.32e-05 GGCCCTGCAA TGCTGCTGCC CTGAGTCCCT chr9:41474568-41474668 + 55 2.32e-05 GCCCCCGGAG GGCAGCTGGG GCTGAGCAAT chr9:118973998-118974098 - 63 2.32e-05 GACTGCGGCT GGCTGCTGGC CAGCTGACAA chr11:113971806-11397190 + 74 2.32e-05 AGAAGGCTTG GGCTGCTGGC TCTTTTTATT chr3:125779457-125779557 + 16 2.32e-05 GCATTTCTCA GGCAGCTGGG ACTTCACTCC chr15:90593877-90593977 + 33 2.32e-05 AAGAGCCAAA TGCTGCTGTA AGCATCCTGC chr11:93812456-93812556 - 54 2.68e-05 TGGAGATGCC TGCTGCTTTG TCCCATCACT chr18:69634194-69634294 - 43 2.68e-05 GGATGCAATT TGCAGCTCTG TCTTCTGAAC chr3:39527185-39527285 - 34 3.10e-05 CCTCACCATC TGCTGCAGTC TCACTTTAGT chr8:112840225-112840325 + 73 3.49e-05 ACTTGCTGGT GGCAGCTGCG GCTCATAGCT chr2:9620491-9620591 + 27 3.49e-05 GGCTTGCCGG AGCTGCTCTG CACGGATGAC chr8:87851321-87851421 + 52 4.00e-05 actggccTTC GGCAGCTCTG TCATCTCCAG chr18:40369849-40369949 - 7 4.00e-05 ACTGCTAAGC TGCTGCACTG TAAATC chr8:26879311-26879411 + 4 4.00e-05 TCT GGCTGCTCTC TGTTTTTAAA chr2:5641661-5641761 - 23 4.00e-05 TTAGTATCTG TGCTGCTGAA GCAAGCGCAC chr3:43015244-43015344 + 68 4.00e-05 TATTTCATCT TGCTGCTGAA TATTTTATTT chr12:70610513-70610613 + 4 4.00e-05 ATT AGCTGCAGTG ATTTACTGAG chrX:162698849-162698949 - 84 4.00e-05 CTCTCCG TGCTGCGGTC TCACCGCTGG chr17:30283620-30283720 - 4 4.59e-05 TGGGCTTGGC TGCAGCTCAG ATG chr5:31984577-31984677 - 8 4.59e-05 ACTAGCTGTT AGCTGCTGAC TGATCCT chr13:10628412-10628512 + 16 4.59e-05 GAATATTCTT TGCTGCTCAC TAAAGATCTC chr9:62476985-62477085 + 26 4.59e-05 CCCTCCTCCA GGCTGCAGTC TGGCCCTGGC chr1:127467121-127467221 - 40 4.59e-05 CTCACACAGA GGCAGCAGTG GACACAAGAA chr15:11872123-11872223 + 29 4.59e-05 TAACACCCTC TGCAGCTCAG GATTAGCAAG chr16:27420901-27421001 + 77 4.59e-05 TAGAGTAGTA GGCTGCTCCG GAAATGTGTG chr2:11429605-11429705 + 30 4.98e-05 GGCTGAGTCA TGCAGCTGGC TGAATCAACT chr10:56995596-56995696 + 21 4.98e-05 GTGCCATGTT TGCAGCTGGC ATGTGGCAGA chr9:101977048-101977148 - 69 5.32e-05 GACTTTAAAA TGCTGCTGGA AGTAGGGAGG chr1:32478507-32478607 + 63 5.32e-05 ccaggagcag tgctgctgga tcttctggta chr13:107600541-10760064 + 52 5.32e-05 GAAGCAGCAG TGCTGCTGGA GCCAGGAGGT chr2:117450158-117450258 + 4 5.32e-05 GAC AGCTGCTCAG CATCATCTGG chr15:31660793-31660893 - 38 6.06e-05 GCAGTGTGGG AGCTGCTGGC CTCTTCCCGC chr15:31096134-31096234 - 26 6.06e-05 ATAAGTCACA AGCTGCAGAG TGGGGCTGGC chr1:8582496-8582596 + 19 6.06e-05 GACCTTGTCA TGCTGCACAG GTTCTTGCAA chr4:151483200-151483300 - 18 6.06e-05 GCCACCTGTC TGCTGCACAG CGCACCAACT chr19:56690467-56690567 + 61 6.06e-05 TGCCTACATG TGCAGCTCGG ATCTTCCTAG chr15:17614770-17614870 + 41 6.06e-05 AACTCCTACA TGCTGCACAG TCCATGTTTC chr15:53281630-53281730 - 56 6.50e-05 TGGGAGGTGT TGCAGCTGTA GAGGGAGGTG chr8:84334333-84334433 - 80 6.50e-05 GCGTGGAGTG GGCAGCAGAG AGTGCTCGCT chr12:66724904-66725004 + 73 7.10e-05 ACAGAACAAC TGCTGCTTTC TGCTACAGAT chr15:72630635-72630735 - 10 8.16e-05 TGCTGCTCCC TGCTGCTCCC TGCTCATAA chr15:32656077-32656177 - 49 8.16e-05 TCATTCCTAC TGCTGCTTCG AGACCATTGG chr1:43140825-43140925 + 81 8.16e-05 TCTAGCCACA AGCTGCTGTA TATCTTTGGC chr11:93787363-93787463 - 70 8.16e-05 TTTGTTCAGC TGCAGCTCCG GCTGGAAGGA chr18:65221214-65221314 - 7 8.16e-05 GCTCCTAGCA GGCAGCGGAG CTTGGC chr11:97551157-97551257 - 59 8.16e-05 TTGGGAAGAA GGCAGCGGAG GGAAGCTTCG chr6:35482416-35482516 - 39 8.16e-05 AGCATGATTC TGCTGCTTCG CTGGCTTCTC chr12:88996093-88996193 - 41 8.77e-05 AGCTCAAACC AGCAGCTCTG CAGAGAGATG chr10:66879150-66879250 - 6 8.77e-05 AGCATGTACC TGCTGCAGCC AGCAT chr5:125763810-125763910 - 8 8.77e-05 CATCAGCCCT TGCTGCAGTA TCTCTGC chr7:111352120-111352220 + 27 9.76e-05 agcacaactt ggcagctttg gaaacataat chr4:104678133-104678233 + 83 9.76e-05 GAAGCATGTG GGCTGCTTTC AACTGGGA chr4:5078720-5078820 + 57 9.76e-05 ACTCCTCTCT GGCTGCTGCA TCTCTCTGCT chr13:107268909-10726900 - 77 9.76e-05 CTTTTCTGTG GGCTGCTTTC TTTCTTGTAC chr10:14044441-14044541 - 38 9.76e-05 CACTGGAAAA GGCTGCTTTC TTTTTCCAGG chr9:93150051-93150151 + 62 9.76e-05 CGCATTTTCT AGCAGCAGTG TTGAATACAT chr15:41162216-41162316 + 39 9.76e-05 CATTCATCCT AGCAGCAGTG TCCCAGCCAA chr18:82855520-82855620 - 33 1.08e-04 CAGCCCACTT TGCAGCGGCG CAGCGACTCC chr12:13779711-13779811 - 57 1.16e-04 CCTCATCCCC TGCTGGTGAG AGGCGCAGTG chr17:4457503-4457603 + 46 1.16e-04 AAGTGTTGGT TGCAGCAGAC TATGCAGAGC chr1:47196835-47196935 + 66 1.25e-04 CAGCCTTTCT TACTGCTGTG CTGACTGTTT chr10:14041659-14041759 + 76 1.36e-04 GTGTGGGACT GGCAGCTTAG AACTCAGATG chr2:59534285-59534385 - 13 1.36e-04 GTTGCTGCTA GGCTGCGGCC ACAGATAAAC chrX:124542073-124542173 - 33 1.42e-04 ACACCTCCTC TGCTGGTGGG TGTTTAAGTT chr2:33544781-33544881 - 4 1.42e-04 GTCTATCTTG GGCAGCAGAC ACT chr13:97705815-97705915 + 9 1.52e-04 TGGGCTTC GACTGCTGTG GGAGGCTCTA chr16:75366704-75366804 + 62 1.52e-04 GGCCATTTTG TGCTGCGTAG TAAATTTCAC chr8:46934885-46934985 - 74 1.67e-04 GGAAAAGAAC TGCGGCTGGG ATGCAGCCTG chr13:12083571-12083671 + 18 1.67e-04 TGCTTTGCAC TGCAGGTGTG TGTGAAAATG chr12:6996694-6996794 + 57 1.76e-04 CATGGATCTT TGCTGCTCCA TCTGCTGGAC chr4:128440525-128440625 + 24 1.90e-04 ACACTATAAT AGCTGGTGTG TTGACGAGGC chr6:80790654-80790754 - 84 1.90e-04 GAAGGGA GGCAGCGCAG AGGACTCCAG chr1:158328190-158328290 + 46 2.19e-04 AAGCAGAAAG AGCTGCACTC GAAATATATG chr2:11969862-11969962 + 72 2.76e-04 GCCTCCAGTT TACTGCAGTG TGTTGGAACC chr3:97071921-97072021 + 55 3.25e-04 TCTCCCAGCA TGCTGCGTGC TCACAGAAAG chr7:113117112-113117212 - 22 3.61e-04 CCATCCTGTG AGCGGCTGTC TCGTGGGAGA chr18:43932815-43932915 - 42 3.61e-04 GAGGGTGGTT TGCAGCGGCA GCAGGCCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCTGCTGWG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:11788197-11788297 6.9e-07 12_[-3]_78 chr10:108554989-10855508 6.9e-07 75_[-3]_15 chr16:73647182-73647282 6.9e-07 3_[+3]_87 chr18:28077669-28077769 6.9e-07 27_[+3]_63 chr1:151138297-151138397 1.2e-06 10_[-3]_80 chr10:43001104-43001204 1.2e-06 3_[+3]_87 chr5:66798187-66798287 1.2e-06 35_[+3]_55 chr15:50806655-50806755 1.9e-06 53_[+3]_37 chr8:79082622-79082722 1.9e-06 21_[+3]_69 chr14:20873215-20873315 3e-06 38_[+3]_52 chr13:112758506-11275860 3e-06 10_[+3]_80 chr3:85495494-85495594 5.3e-06 36_[-3]_54 chr10:99322519-99322619 6.7e-06 37_[+3]_53 chr2:45181512-45181612 6.7e-06 49_[+3]_41 chr15:95460097-95460197 6.7e-06 20_[+3]_70 chr3:39965383-39965483 6.7e-06 30_[-3]_60 chr9:56505010-56505110 6.7e-06 19_[+3]_71 chr13:68624672-68624772 8.4e-06 55_[-3]_35 chr2:122971586-122971686 8.4e-06 3_[+3]_87 chr11:13080706-13080806 1e-05 29_[+3]_61 chr17:27392800-27392900 1e-05 6_[+3]_84 chr15:50261431-50261531 1e-05 38_[+3]_52 chr18:65102704-65102804 1.1e-05 78_[-3]_12 chr2:158204083-158204183 1.1e-05 6_[+3]_84 chr17:70629889-70629989 1.3e-05 1_[+3]_89 chr10:111539847-11153994 1.3e-05 40_[-3]_50 chr14:121826063-12182616 1.3e-05 75_[+3]_15 chr11:20987659-20987759 1.6e-05 26_[-3]_64 chr10:66631045-66631145 1.6e-05 32_[-3]_58 chr1:119221775-119221875 1.9e-05 60_[-3]_30 chrX:13347268-13347368 1.9e-05 56_[+3]_34 chr13:95286950-95287050 2.3e-05 26_[+3]_64 chr9:41474568-41474668 2.3e-05 54_[+3]_36 chr9:118973998-118974098 2.3e-05 62_[-3]_28 chr11:113971806-11397190 2.3e-05 73_[+3]_17 chr3:125779457-125779557 2.3e-05 15_[+3]_75 chr15:90593877-90593977 2.3e-05 32_[+3]_58 chr11:93812456-93812556 2.7e-05 53_[-3]_37 chr18:69634194-69634294 2.7e-05 42_[-3]_48 chr3:39527185-39527285 3.1e-05 33_[-3]_57 chr8:112840225-112840325 3.5e-05 72_[+3]_18 chr2:9620491-9620591 3.5e-05 26_[+3]_64 chr8:87851321-87851421 4e-05 51_[+3]_39 chr18:40369849-40369949 4e-05 6_[-3]_84 chr8:26879311-26879411 4e-05 3_[+3]_87 chr2:5641661-5641761 4e-05 22_[-3]_68 chr3:43015244-43015344 4e-05 67_[+3]_23 chr12:70610513-70610613 4e-05 3_[+3]_87 chrX:162698849-162698949 4e-05 83_[-3]_7 chr17:30283620-30283720 4.6e-05 3_[-3]_87 chr5:31984577-31984677 4.6e-05 7_[-3]_83 chr13:10628412-10628512 4.6e-05 15_[+3]_75 chr9:62476985-62477085 4.6e-05 25_[+3]_65 chr1:127467121-127467221 4.6e-05 39_[-3]_51 chr15:11872123-11872223 4.6e-05 28_[+3]_62 chr16:27420901-27421001 4.6e-05 76_[+3]_14 chr2:11429605-11429705 5e-05 29_[+3]_61 chr10:56995596-56995696 5e-05 20_[+3]_70 chr9:101977048-101977148 5.3e-05 68_[-3]_22 chr1:32478507-32478607 5.3e-05 62_[+3]_28 chr13:107600541-10760064 5.3e-05 51_[+3]_39 chr2:117450158-117450258 5.3e-05 3_[+3]_87 chr15:31660793-31660893 6.1e-05 37_[-3]_53 chr15:31096134-31096234 6.1e-05 25_[-3]_65 chr1:8582496-8582596 6.1e-05 18_[+3]_72 chr4:151483200-151483300 6.1e-05 17_[-3]_73 chr19:56690467-56690567 6.1e-05 60_[+3]_30 chr15:17614770-17614870 6.1e-05 40_[+3]_50 chr15:53281630-53281730 6.5e-05 55_[-3]_35 chr8:84334333-84334433 6.5e-05 79_[-3]_11 chr12:66724904-66725004 7.1e-05 72_[+3]_18 chr15:72630635-72630735 8.2e-05 9_[-3]_81 chr15:32656077-32656177 8.2e-05 48_[-3]_42 chr1:43140825-43140925 8.2e-05 80_[+3]_10 chr11:93787363-93787463 8.2e-05 69_[-3]_21 chr18:65221214-65221314 8.2e-05 6_[-3]_84 chr11:97551157-97551257 8.2e-05 58_[-3]_32 chr6:35482416-35482516 8.2e-05 38_[-3]_52 chr12:88996093-88996193 8.8e-05 40_[-3]_50 chr10:66879150-66879250 8.8e-05 5_[-3]_85 chr5:125763810-125763910 8.8e-05 7_[-3]_83 chr7:111352120-111352220 9.8e-05 26_[+3]_64 chr4:104678133-104678233 9.8e-05 82_[+3]_8 chr4:5078720-5078820 9.8e-05 56_[+3]_34 chr13:107268909-10726900 9.8e-05 76_[-3]_14 chr10:14044441-14044541 9.8e-05 37_[-3]_53 chr9:93150051-93150151 9.8e-05 61_[+3]_29 chr15:41162216-41162316 9.8e-05 38_[+3]_52 chr18:82855520-82855620 0.00011 32_[-3]_58 chr12:13779711-13779811 0.00012 56_[-3]_34 chr17:4457503-4457603 0.00012 45_[+3]_45 chr1:47196835-47196935 0.00012 65_[+3]_25 chr10:14041659-14041759 0.00014 75_[+3]_15 chr2:59534285-59534385 0.00014 12_[-3]_78 chrX:124542073-124542173 0.00014 32_[-3]_58 chr2:33544781-33544881 0.00014 3_[-3]_87 chr13:97705815-97705915 0.00015 8_[+3]_82 chr16:75366704-75366804 0.00015 61_[+3]_29 chr8:46934885-46934985 0.00017 73_[-3]_17 chr13:12083571-12083671 0.00017 17_[+3]_73 chr12:6996694-6996794 0.00018 56_[+3]_34 chr4:128440525-128440625 0.00019 23_[+3]_67 chr6:80790654-80790754 0.00019 83_[-3]_7 chr1:158328190-158328290 0.00022 45_[+3]_45 chr2:11969862-11969962 0.00028 71_[+3]_19 chr3:97071921-97072021 0.00032 54_[+3]_36 chr7:113117112-113117212 0.00036 21_[-3]_69 chr18:43932815-43932915 0.00036 41_[-3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCTGCTGWG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGCTGCTGWG width=10 seqs=108 chr1:11788197-11788297 ( 13) TGCTGCTGTG 1 chr10:108554989-10855508 ( 76) TGCTGCTGTG 1 chr16:73647182-73647282 ( 4) TGCTGCTGTG 1 chr18:28077669-28077769 ( 28) TGCTGCTGTG 1 chr1:151138297-151138397 ( 11) GGCTGCTGTG 1 chr10:43001104-43001204 ( 4) GGCTGCTGTG 1 chr5:66798187-66798287 ( 36) GGCTGCTGTG 1 chr15:50806655-50806755 ( 54) TGCTGCTGAG 1 chr8:79082622-79082722 ( 22) TGCTGCTGAG 1 chr14:20873215-20873315 ( 39) TGCTGCTGGG 1 chr13:112758506-11275860 ( 11) TGCTGCTGGG 1 chr3:85495494-85495594 ( 37) GGCTGCTGGG 1 chr10:99322519-99322619 ( 38) TGCTGCTCTG 1 chr2:45181512-45181612 ( 50) AGCTGCTGTG 1 chr15:95460097-95460197 ( 21) AGCTGCTGTG 1 chr3:39965383-39965483 ( 31) AGCTGCTGTG 1 chr9:56505010-56505110 ( 20) TGCTGCTCTG 1 chr13:68624672-68624772 ( 56) GGCAGCTGTG 1 chr2:122971586-122971686 ( 4) GGCTGCTGTC 1 chr11:13080706-13080806 ( 30) TGCAGCTGAG 1 chr17:27392800-27392900 ( 7) TGCTGCTGAC 1 chr15:50261431-50261531 ( 39) TGCTGCTGAC 1 chr18:65102704-65102804 ( 79) GGCTGCTCTG 1 chr2:158204083-158204183 ( 7) TGCTGCGGTG 1 chr17:70629889-70629989 ( 2) AGCTGCTGAG 1 chr10:111539847-11153994 ( 41) GGCTGCAGTG 1 chr14:121826063-12182616 ( 76) AGCTGCTGAG 1 chr11:20987659-20987759 ( 27) GGCTGCTGAC 1 chr10:66631045-66631145 ( 33) TGCTGCAGAG 1 chr1:119221775-119221875 ( 61) TGCTGCGGAG 1 chrX:13347268-13347368 ( 57) TGCTGCGGAG 1 chr13:95286950-95287050 ( 27) TGCTGCTGCC 1 chr9:41474568-41474668 ( 55) GGCAGCTGGG 1 chr9:118973998-118974098 ( 63) GGCTGCTGGC 1 chr11:113971806-11397190 ( 74) GGCTGCTGGC 1 chr3:125779457-125779557 ( 16) GGCAGCTGGG 1 chr15:90593877-90593977 ( 33) TGCTGCTGTA 1 chr11:93812456-93812556 ( 54) TGCTGCTTTG 1 chr18:69634194-69634294 ( 43) TGCAGCTCTG 1 chr3:39527185-39527285 ( 34) TGCTGCAGTC 1 chr8:112840225-112840325 ( 73) GGCAGCTGCG 1 chr2:9620491-9620591 ( 27) AGCTGCTCTG 1 chr8:87851321-87851421 ( 52) GGCAGCTCTG 1 chr18:40369849-40369949 ( 7) TGCTGCACTG 1 chr8:26879311-26879411 ( 4) GGCTGCTCTC 1 chr2:5641661-5641761 ( 23) TGCTGCTGAA 1 chr3:43015244-43015344 ( 68) TGCTGCTGAA 1 chr12:70610513-70610613 ( 4) AGCTGCAGTG 1 chrX:162698849-162698949 ( 84) TGCTGCGGTC 1 chr17:30283620-30283720 ( 4) TGCAGCTCAG 1 chr5:31984577-31984677 ( 8) AGCTGCTGAC 1 chr13:10628412-10628512 ( 16) TGCTGCTCAC 1 chr9:62476985-62477085 ( 26) GGCTGCAGTC 1 chr1:127467121-127467221 ( 40) GGCAGCAGTG 1 chr15:11872123-11872223 ( 29) TGCAGCTCAG 1 chr16:27420901-27421001 ( 77) GGCTGCTCCG 1 chr2:11429605-11429705 ( 30) TGCAGCTGGC 1 chr10:56995596-56995696 ( 21) TGCAGCTGGC 1 chr9:101977048-101977148 ( 69) TGCTGCTGGA 1 chr1:32478507-32478607 ( 63) TGCTGCTGGA 1 chr13:107600541-10760064 ( 52) TGCTGCTGGA 1 chr2:117450158-117450258 ( 4) AGCTGCTCAG 1 chr15:31660793-31660893 ( 38) AGCTGCTGGC 1 chr15:31096134-31096234 ( 26) AGCTGCAGAG 1 chr1:8582496-8582596 ( 19) TGCTGCACAG 1 chr4:151483200-151483300 ( 18) TGCTGCACAG 1 chr19:56690467-56690567 ( 61) TGCAGCTCGG 1 chr15:17614770-17614870 ( 41) TGCTGCACAG 1 chr15:53281630-53281730 ( 56) TGCAGCTGTA 1 chr8:84334333-84334433 ( 80) GGCAGCAGAG 1 chr12:66724904-66725004 ( 73) TGCTGCTTTC 1 chr15:72630635-72630735 ( 10) TGCTGCTCCC 1 chr15:32656077-32656177 ( 49) TGCTGCTTCG 1 chr1:43140825-43140925 ( 81) AGCTGCTGTA 1 chr11:93787363-93787463 ( 70) TGCAGCTCCG 1 chr18:65221214-65221314 ( 7) GGCAGCGGAG 1 chr11:97551157-97551257 ( 59) GGCAGCGGAG 1 chr6:35482416-35482516 ( 39) TGCTGCTTCG 1 chr12:88996093-88996193 ( 41) AGCAGCTCTG 1 chr10:66879150-66879250 ( 6) TGCTGCAGCC 1 chr5:125763810-125763910 ( 8) TGCTGCAGTA 1 chr7:111352120-111352220 ( 27) GGCAGCTTTG 1 chr4:104678133-104678233 ( 83) GGCTGCTTTC 1 chr4:5078720-5078820 ( 57) GGCTGCTGCA 1 chr13:107268909-10726900 ( 77) GGCTGCTTTC 1 chr10:14044441-14044541 ( 38) GGCTGCTTTC 1 chr9:93150051-93150151 ( 62) AGCAGCAGTG 1 chr15:41162216-41162316 ( 39) AGCAGCAGTG 1 chr18:82855520-82855620 ( 33) TGCAGCGGCG 1 chr12:13779711-13779811 ( 57) TGCTGGTGAG 1 chr17:4457503-4457603 ( 46) TGCAGCAGAC 1 chr1:47196835-47196935 ( 66) TACTGCTGTG 1 chr10:14041659-14041759 ( 76) GGCAGCTTAG 1 chr2:59534285-59534385 ( 13) GGCTGCGGCC 1 chrX:124542073-124542173 ( 33) TGCTGGTGGG 1 chr2:33544781-33544881 ( 4) GGCAGCAGAC 1 chr13:97705815-97705915 ( 9) GACTGCTGTG 1 chr16:75366704-75366804 ( 62) TGCTGCGTAG 1 chr8:46934885-46934985 ( 74) TGCGGCTGGG 1 chr13:12083571-12083671 ( 18) TGCAGGTGTG 1 chr12:6996694-6996794 ( 57) TGCTGCTCCA 1 chr4:128440525-128440625 ( 24) AGCTGGTGTG 1 chr6:80790654-80790754 ( 84) GGCAGCGCAG 1 chr1:158328190-158328290 ( 46) AGCTGCACTC 1 chr2:11969862-11969962 ( 72) TACTGCAGTG 1 chr3:97071921-97072021 ( 55) TGCTGCGTGC 1 chr7:113117112-113117212 ( 22) AGCGGCTGTC 1 chr18:43932815-43932915 ( 42) TGCAGCGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCTGCTGWG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 54600 bayes= 10.1747 E= 1.4e-009 -75 -1340 44 93 -334 -1340 215 -1340 -1340 219 -1340 -1340 -7 -1340 -356 134 -1340 -1340 219 -1340 -1340 214 -256 -1340 -60 -1340 -98 132 -1340 -4 165 -146 3 -86 -48 63 -134 24 152 -1340 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCTGCTGWG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 108 E= 1.4e-009 0.166667 0.000000 0.296296 0.537037 0.027778 0.000000 0.972222 0.000000 0.000000 1.000000 0.000000 0.000000 0.268519 0.000000 0.018519 0.712963 0.000000 0.000000 1.000000 0.000000 0.000000 0.962963 0.037037 0.000000 0.185185 0.000000 0.111111 0.703704 0.000000 0.212963 0.685185 0.101852 0.287037 0.120370 0.157407 0.435185 0.111111 0.259259 0.629630 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCTGCTGWG MEME-3 regular expression -------------------------------------------------------------------------------- [TG]GC[TA]GCT[GC][TA][GC] -------------------------------------------------------------------------------- Time 884.74 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGRRAGARARARRAAAGAAR MEME-4 width = 21 sites = 54 llr = 591 E-value = 5.4e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRRAGARARARRAAAGAAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A 573357283859447861674 pos.-specific C 1:::1::12:::111211211 probability G 41764181524:442:17225 matrix T 11:::2::1:1:2:::21::1 bits 2.2 2.0 1.8 1.5 * Relative 1.3 * * * * Entropy 1.1 * * * * * (15.8 bits) 0.9 ** *** * * * 0.7 ******* * * *** * * 0.4 ************ ******** 0.2 ********************* 0.0 --------------------- Multilevel AAGGAAGAGAAAAAAAAGAAG consensus G AAGTA A G GGGC G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRAGARARARRAAAGAAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr10:108927663-10892776 - 70 1.57e-08 AGAAGAAGAA GAAGAAGAAGAAAAAAAGAAG GAAGGAAGGA chr5:45278513-45278613 + 23 1.83e-08 TCTAGAACCA AAGGGAGAGACAAGAAAGAAA ATTTCATCAA chr2:170848824-170848924 - 71 3.38e-08 GAATTTAAT TTGGAAGAGGAAAGAAAGAAG GTGATAATTG chr13:45988599-45988699 + 1 8.06e-08 . AAGGAAGAGAAAGCAAACAGA AGTGTGGCAG chr3:26938814-26938914 - 3 1.21e-07 CCAGAAGTTG CAGGAAGAGAGAAAACATAAG CC chr1:158328190-158328290 + 65 1.80e-07 CGAAATATAT GTGGAAGAGAAAAAGAATGAG GGACAGAGAC chr8:23780039-23780139 - 20 1.80e-07 CCACAGCAAG ATGAGAGAAAGAGACAAGAAA AATCCTCAGA chr10:102102503-10210260 - 33 2.33e-07 AGAACTCATT AAGGAAGAGAAATAGAATAGA CATATGGATA chr10:119742617-11974271 - 56 2.64e-07 GCATACAGGA AGAAGAGAGAGAGGACAGGAA GTGGGGTCAG chr3:120473579-120473679 - 11 4.32e-07 AAAGCCAAGA AGAGAAGAGAGAGCCAAGGAG CCCAGAAAGG chr16:9886828-9886928 - 76 4.32e-07 GAGA GAGAGAGAGAGAGAGATTGAG AGAGAGATTG chr5:112850986-112851086 + 71 4.86e-07 gagaaggaaa gaaggagagagagggaggggg acagaggag chr5:55880239-55880339 + 77 6.90e-07 TCCAGTTTCA AAGAGAGAAGAAAAAAAAAAA TCC chr13:113471202-11347130 + 72 6.90e-07 acacggggaa gagaaagagaaATGCCAGCCG TCCATATC chr17:63661000-63661100 - 9 6.90e-07 GGTGTAAGCT GAGGCTAAGAAAAGAAGGAAG GAATTATG chr17:70598434-70598534 - 38 7.73e-07 AAAGAATTTG GGGGAAAACAGACAACAGAAG AGCACAGACA chr10:18631629-18631729 + 32 8.66e-07 CTACGTCCAC GAGGCTGACAAAGGACAGAAC TGAATTTTGT chr3:101740890-101740990 - 74 8.66e-07 AGAATA AAGGATGCGAAATGAATGACG TTAACTGGAA chr17:30283620-30283720 - 28 9.69e-07 GGAGGAACAG AAGGAAGAGAAGAAGCAGCAG CGAGTGGGCT chr15:20546429-20546529 + 72 9.69e-07 GGTCAGAACA AAAGAAGAAATAAGAAATGAA GATTTCGG chr13:93241137-93241237 + 52 1.08e-06 CTAATTggaa gagaaaggaggaggaaggaag gactgaggta chr2:9620491-9620591 - 73 1.21e-06 GGGAGCC AAAAGAGCGAGAGCCAAGAAG GTGTGTTCGG chr2:163939574-163939674 - 68 1.35e-06 AGCTGTCCCT TTAAAAGAGAGAGAGAAGCAG AGATGGCTCA chr2:43950210-43950310 + 32 1.67e-06 AATGACTCAG GAGAGTTAAAAAGAAAAGAAG GGTGTGTTTG chr15:13639106-13639206 - 66 1.67e-06 AGTGTTTGTT TGGGAAAAAAGATGAAAGGAA TTTTTGGCAG chr2:81006806-81006906 + 76 1.85e-06 TGAGAAGATC ATGAAGGAGGAAGGAATGAAA CACG chr3:21727855-21727955 + 32 2.27e-06 GGGACACCCA CAGAGAAACAAATAGAAGAAG CAGGACCTGG chrX:124542073-124542173 - 76 2.79e-06 AATC AAGAAAACTAAAGACAAGAAG CATTAGAGAT chr1:56851304-56851404 - 78 3.08e-06 AA AAGGATAAAATAAGAATGAGA ATATGAAATG chr16:22484323-22484423 + 64 3.40e-06 AGTCTGGTAC TAAGATGAAAGAGAACAGAAT GTAAGGCAGT chr3:146318806-146318906 - 58 3.40e-06 GCCTGTCTCT GAGGAAGAGGAAAAACCCACA CGGGCTTCTT chr5:4959144-4959244 - 9 3.75e-06 AGTGGGTGTC AAGAGAAGGAGAAAAATGAAT ATATTTAA chr14:108697499-10869759 - 53 3.75e-06 CCTAGAAAAT TTGGGAGAGAAATGAACCAAA CACTGTTTCC chr15:61446652-61446752 + 31 4.13e-06 CAGAAGTAGG AGAGGTGGAAAATGAAAGAAA ACTCTTTTGG chr2:142599000-142599100 - 15 4.13e-06 TGACTCCTCC AAGGGAGAAAGCAGGAATGAA GCCACCTGTG chr10:43001104-43001204 - 45 4.99e-06 ACCACACACA AAGAGAAACAGAACAATTAAG GACGTAAGAA chr15:25269508-25269608 + 78 5.48e-06 GCTTTCAGCT GAGGGGGAAAAAAAAAACCAT TC chr18:64467954-64468054 + 58 6.60e-06 TGTAGGGGGT GAGGAAGACAGACACAAGTGG GCTGTTATCT chr1:193748035-193748135 - 37 6.60e-06 CAGTCTGAAA ATGGCAAAGAAAAAAAAAAGA TTTGCAGTGC chr9:56505010-56505110 + 66 6.60e-06 GGAGCCCTGC AGGGCAGGGAAAGGACCCAAG GCCAGACTTC chr11:65461082-65461182 - 77 7.22e-06 TGA GAGAGTGGAAAAAAAAAACAG TTGAGTCTGC chr12:88620110-88620210 - 10 7.22e-06 TTTGTTAGGT ACAGAAGATAGAGGGAAGGCG TTCCTGTGG chr4:82411989-82412089 + 46 8.64e-06 CACTTGGGTG AAATGTGAGAAAGAACCGAAA ATTCCACCAG chr12:46040502-46040602 + 78 8.64e-06 AGGCCACACA GAGGAGGAGATATTAAAGCAG CA chr3:86841027-86841127 - 13 1.03e-05 GAGTCTTTCA AAGGAAGCCAGAAGGAAAGAC TGTCTTTTGC chr12:72213393-72213493 + 9 1.22e-05 GGATGGGA GAGAGTGAAGTAAACAAGGGG acaggatgtt chr8:95974815-95974915 - 28 1.22e-05 TAGCGTCAGG AAGGAGAATATAAGAAAGAAC GTTGCCCATG chr16:97398352-97398452 + 23 1.58e-05 CCTGGTGGTA GAAAAAAAAAAAGAACAGCGT GTAAGAGTCT chr9:118973998-118974098 - 75 1.86e-05 AGGCA GAGGCAGGCAGACGACTGCGG CTGGCTGCTG chr4:136494089-136494189 - 33 2.01e-05 CAGTTCACTA GAATAAGACATAGGAATGACA CAGCAACATC chr4:70058813-70058913 - 57 2.01e-05 TTAAAATGAG ATGGCAGATGGAAAGACGAGG TGGAGCGGGC chr3:126722948-126723048 + 52 4.02e-05 TTTTACATCC CAGGATGAGAACGGAATCCAA CTCTCTCCAT chr16:35470022-35470122 + 11 1.19e-04 GCAGCCAAAC ACGGGAGACGGACCAACGGCA GAGGCAGCTT chr13:43193564-43193664 - 17 1.52e-04 TGGCTCCATT TGAAAAACGAAATGACTGACG TATTTTATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRAGARARARRAAAGAAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:108927663-10892776 1.6e-08 69_[-4]_10 chr5:45278513-45278613 1.8e-08 22_[+4]_57 chr2:170848824-170848924 3.4e-08 70_[-4]_9 chr13:45988599-45988699 8.1e-08 [+4]_79 chr3:26938814-26938914 1.2e-07 2_[-4]_77 chr1:158328190-158328290 1.8e-07 64_[+4]_15 chr8:23780039-23780139 1.8e-07 19_[-4]_60 chr10:102102503-10210260 2.3e-07 32_[-4]_47 chr10:119742617-11974271 2.6e-07 55_[-4]_24 chr3:120473579-120473679 4.3e-07 10_[-4]_69 chr16:9886828-9886928 4.3e-07 75_[-4]_4 chr5:112850986-112851086 4.9e-07 70_[+4]_9 chr5:55880239-55880339 6.9e-07 76_[+4]_3 chr13:113471202-11347130 6.9e-07 71_[+4]_8 chr17:63661000-63661100 6.9e-07 8_[-4]_71 chr17:70598434-70598534 7.7e-07 37_[-4]_42 chr10:18631629-18631729 8.7e-07 31_[+4]_48 chr3:101740890-101740990 8.7e-07 73_[-4]_6 chr17:30283620-30283720 9.7e-07 27_[-4]_52 chr15:20546429-20546529 9.7e-07 71_[+4]_8 chr13:93241137-93241237 1.1e-06 51_[+4]_28 chr2:9620491-9620591 1.2e-06 72_[-4]_7 chr2:163939574-163939674 1.3e-06 67_[-4]_12 chr2:43950210-43950310 1.7e-06 31_[+4]_48 chr15:13639106-13639206 1.7e-06 65_[-4]_14 chr2:81006806-81006906 1.8e-06 75_[+4]_4 chr3:21727855-21727955 2.3e-06 31_[+4]_48 chrX:124542073-124542173 2.8e-06 75_[-4]_4 chr1:56851304-56851404 3.1e-06 77_[-4]_2 chr16:22484323-22484423 3.4e-06 63_[+4]_16 chr3:146318806-146318906 3.4e-06 57_[-4]_22 chr5:4959144-4959244 3.7e-06 8_[-4]_71 chr14:108697499-10869759 3.7e-06 52_[-4]_27 chr15:61446652-61446752 4.1e-06 30_[+4]_49 chr2:142599000-142599100 4.1e-06 14_[-4]_65 chr10:43001104-43001204 5e-06 44_[-4]_35 chr15:25269508-25269608 5.5e-06 77_[+4]_2 chr18:64467954-64468054 6.6e-06 57_[+4]_22 chr1:193748035-193748135 6.6e-06 36_[-4]_43 chr9:56505010-56505110 6.6e-06 65_[+4]_14 chr11:65461082-65461182 7.2e-06 76_[-4]_3 chr12:88620110-88620210 7.2e-06 9_[-4]_70 chr4:82411989-82412089 8.6e-06 45_[+4]_34 chr12:46040502-46040602 8.6e-06 77_[+4]_2 chr3:86841027-86841127 1e-05 12_[-4]_67 chr12:72213393-72213493 1.2e-05 8_[+4]_71 chr8:95974815-95974915 1.2e-05 27_[-4]_52 chr16:97398352-97398452 1.6e-05 22_[+4]_57 chr9:118973998-118974098 1.9e-05 74_[-4]_5 chr4:136494089-136494189 2e-05 32_[-4]_47 chr4:70058813-70058913 2e-05 56_[-4]_23 chr3:126722948-126723048 4e-05 51_[+4]_28 chr16:35470022-35470122 0.00012 10_[+4]_69 chr13:43193564-43193664 0.00015 16_[-4]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRAGARARARRAAAGAAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRRAGARARARRAAAGAAR width=21 seqs=54 chr10:108927663-10892776 ( 70) GAAGAAGAAGAAAAAAAGAAG 1 chr5:45278513-45278613 ( 23) AAGGGAGAGACAAGAAAGAAA 1 chr2:170848824-170848924 ( 71) TTGGAAGAGGAAAGAAAGAAG 1 chr13:45988599-45988699 ( 1) AAGGAAGAGAAAGCAAACAGA 1 chr3:26938814-26938914 ( 3) CAGGAAGAGAGAAAACATAAG 1 chr1:158328190-158328290 ( 65) GTGGAAGAGAAAAAGAATGAG 1 chr8:23780039-23780139 ( 20) ATGAGAGAAAGAGACAAGAAA 1 chr10:102102503-10210260 ( 33) AAGGAAGAGAAATAGAATAGA 1 chr10:119742617-11974271 ( 56) AGAAGAGAGAGAGGACAGGAA 1 chr3:120473579-120473679 ( 11) AGAGAAGAGAGAGCCAAGGAG 1 chr16:9886828-9886928 ( 76) GAGAGAGAGAGAGAGATTGAG 1 chr5:112850986-112851086 ( 71) GAAGGAGAGAGAGGGAGGGGG 1 chr5:55880239-55880339 ( 77) AAGAGAGAAGAAAAAAAAAAA 1 chr13:113471202-11347130 ( 72) GAGAAAGAGAAATGCCAGCCG 1 chr17:63661000-63661100 ( 9) GAGGCTAAGAAAAGAAGGAAG 1 chr17:70598434-70598534 ( 38) GGGGAAAACAGACAACAGAAG 1 chr10:18631629-18631729 ( 32) GAGGCTGACAAAGGACAGAAC 1 chr3:101740890-101740990 ( 74) AAGGATGCGAAATGAATGACG 1 chr17:30283620-30283720 ( 28) AAGGAAGAGAAGAAGCAGCAG 1 chr15:20546429-20546529 ( 72) AAAGAAGAAATAAGAAATGAA 1 chr13:93241137-93241237 ( 52) GAGAAAGGAGGAGGAAGGAAG 1 chr2:9620491-9620591 ( 73) AAAAGAGCGAGAGCCAAGAAG 1 chr2:163939574-163939674 ( 68) TTAAAAGAGAGAGAGAAGCAG 1 chr2:43950210-43950310 ( 32) GAGAGTTAAAAAGAAAAGAAG 1 chr15:13639106-13639206 ( 66) TGGGAAAAAAGATGAAAGGAA 1 chr2:81006806-81006906 ( 76) ATGAAGGAGGAAGGAATGAAA 1 chr3:21727855-21727955 ( 32) CAGAGAAACAAATAGAAGAAG 1 chrX:124542073-124542173 ( 76) AAGAAAACTAAAGACAAGAAG 1 chr1:56851304-56851404 ( 78) AAGGATAAAATAAGAATGAGA 1 chr16:22484323-22484423 ( 64) TAAGATGAAAGAGAACAGAAT 1 chr3:146318806-146318906 ( 58) GAGGAAGAGGAAAAACCCACA 1 chr5:4959144-4959244 ( 9) AAGAGAAGGAGAAAAATGAAT 1 chr14:108697499-10869759 ( 53) TTGGGAGAGAAATGAACCAAA 1 chr15:61446652-61446752 ( 31) AGAGGTGGAAAATGAAAGAAA 1 chr2:142599000-142599100 ( 15) AAGGGAGAAAGCAGGAATGAA 1 chr10:43001104-43001204 ( 45) AAGAGAAACAGAACAATTAAG 1 chr15:25269508-25269608 ( 78) GAGGGGGAAAAAAAAAACCAT 1 chr18:64467954-64468054 ( 58) GAGGAAGACAGACACAAGTGG 1 chr1:193748035-193748135 ( 37) ATGGCAAAGAAAAAAAAAAGA 1 chr9:56505010-56505110 ( 66) AGGGCAGGGAAAGGACCCAAG 1 chr11:65461082-65461182 ( 77) GAGAGTGGAAAAAAAAAACAG 1 chr12:88620110-88620210 ( 10) ACAGAAGATAGAGGGAAGGCG 1 chr4:82411989-82412089 ( 46) AAATGTGAGAAAGAACCGAAA 1 chr12:46040502-46040602 ( 78) GAGGAGGAGATATTAAAGCAG 1 chr3:86841027-86841127 ( 13) AAGGAAGCCAGAAGGAAAGAC 1 chr12:72213393-72213493 ( 9) GAGAGTGAAGTAAACAAGGGG 1 chr8:95974815-95974915 ( 28) AAGGAGAATATAAGAAAGAAC 1 chr16:97398352-97398452 ( 23) GAAAAAAAAAAAGAACAGCGT 1 chr9:118973998-118974098 ( 75) GAGGCAGGCAGACGACTGCGG 1 chr4:136494089-136494189 ( 33) GAATAAGACATAGGAATGACA 1 chr4:70058813-70058913 ( 57) ATGGCAGATGGAAAGACGAGG 1 chr3:126722948-126723048 ( 52) CAGGATGAGAACGGAATCCAA 1 chr16:35470022-35470122 ( 11) ACGGGAGACGGACCAACGGCA 1 chr13:43193564-43193664 ( 17) TGAAAAACGAAATGACTGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRAGARARARRAAAGAAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.3638 E= 5.4e-007 78 -198 69 -134 128 -256 -76 -92 -12 -1240 176 -1240 25 -1240 152 -292 93 -98 69 -1240 136 -1240 -156 -47 -34 -1240 179 -392 150 -124 -98 -1240 -2 -39 114 -192 157 -1240 -39 -1240 78 -356 83 -134 175 -256 -356 -1240 47 -156 76 -75 66 -124 102 -392 125 -76 -10 -1240 143 14 -1240 -1240 120 -98 -198 -60 -192 -98 165 -112 108 -39 2 -392 128 -76 -24 -1240 32 -198 124 -192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRAGARARARRAAAGAAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 54 E= 5.4e-007 0.481481 0.055556 0.351852 0.111111 0.685185 0.037037 0.129630 0.148148 0.259259 0.000000 0.740741 0.000000 0.333333 0.000000 0.629630 0.037037 0.537037 0.111111 0.351852 0.000000 0.722222 0.000000 0.074074 0.203704 0.222222 0.000000 0.759259 0.018519 0.796296 0.092593 0.111111 0.000000 0.277778 0.166667 0.481481 0.074074 0.833333 0.000000 0.166667 0.000000 0.481481 0.018519 0.388889 0.111111 0.944444 0.037037 0.018519 0.000000 0.388889 0.074074 0.370370 0.166667 0.444444 0.092593 0.444444 0.018519 0.666667 0.129630 0.203704 0.000000 0.759259 0.240741 0.000000 0.000000 0.648148 0.111111 0.055556 0.185185 0.074074 0.111111 0.685185 0.129630 0.592593 0.166667 0.222222 0.018519 0.685185 0.129630 0.185185 0.000000 0.351852 0.055556 0.518519 0.074074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRRAGARARARRAAAGAAR MEME-4 regular expression -------------------------------------------------------------------------------- [AG]A[GA][GA][AG][AT][GA]A[GA]A[AG]A[AG][AG][AG][AC]AG[AG]A[GA] -------------------------------------------------------------------------------- Time 1148.63 secs. ******************************************************************************** ******************************************************************************** MOTIF YAGCAACCACATGGTGVCTCACAACCATC MEME-5 width = 29 sites = 5 llr = 160 E-value = 1.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif YAGCAACCACATGGTGVCTCACAACCATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a::86::a:a:2:::42:28:aa::a:: pos.-specific C 6::8:2aa:a:::2::28:6:a::8a:28 probability G ::a:2::::::288:a4:::2:::2:::2 matrix T 4::2:2:::::8::a:::a2:::::::8: bits 2.2 * ** * * * * 2.0 * ** * * * * 1.8 ** ***** ** * *** ** 1.5 ** ***** *** * ****** * Relative 1.3 *** ***** **** ** ****** * Entropy 1.1 ***** ********** ** ********* (46.1 bits) 0.9 ***** ********** ** ********* 0.7 ***** ********** ************ 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel CAGCAACCACATGGTGACTCACAACCATC consensus T TGC GAC GA AG G CG sequence T C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCAACCACATGGTGVCTCACAACCATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr13:81471329-81471429 + 27 1.91e-18 gtttaatttc cagcaaccacatggtggctcacaaccatc tggtatccgg chr6:9557064-9557164 + 54 2.31e-17 gttaaattcc cagcaaccacatggtggctcacaaccacc tgtaatgtga chr1:9100755-9100855 + 20 3.23e-16 attcaacttc tagcaaccacatggtgccttacaaccatc tataagggga chr11:104412204-10441230 - 51 9.06e-15 GTTAAATTCT CAGTGCCCACATAGTGACTCACAACCATC TGTTAAATCT chr1:21523185-21523285 - 55 2.31e-13 AATATATATA TAGCATCCACAGGCTGAATAGCAAGCATG GCTCTTTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCAACCACATGGTGVCTCACAACCATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:81471329-81471429 1.9e-18 26_[+5]_45 chr6:9557064-9557164 2.3e-17 53_[+5]_18 chr1:9100755-9100855 3.2e-16 19_[+5]_52 chr11:104412204-10441230 9.1e-15 50_[-5]_21 chr1:21523185-21523285 2.3e-13 54_[-5]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCAACCACATGGTGVCTCACAACCATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YAGCAACCACATGGTGVCTCACAACCATC width=29 seqs=5 chr13:81471329-81471429 ( 27) CAGCAACCACATGGTGGCTCACAACCATC 1 chr6:9557064-9557164 ( 54) CAGCAACCACATGGTGGCTCACAACCACC 1 chr1:9100755-9100855 ( 20) TAGCAACCACATGGTGCCTTACAACCATC 1 chr11:104412204-10441230 ( 51) CAGTGCCCACATAGTGACTCACAACCATC 1 chr1:21523185-21523285 ( 55) TAGCATCCACAGGCTGAATAGCAAGCATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCAACCACATGGTGVCTCACAACCATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 13.3282 E= 1.3e-005 -897 145 -897 51 183 -897 -897 -897 -897 -897 219 -897 -897 187 -897 -49 151 -897 -13 -897 109 -13 -897 -49 -897 219 -897 -897 -897 219 -897 -897 183 -897 -897 -897 -897 219 -897 -897 183 -897 -897 -897 -897 -897 -13 151 -49 -897 187 -897 -897 -13 187 -897 -897 -897 -897 183 -897 -897 219 -897 51 -13 87 -897 -49 187 -897 -897 -897 -897 -897 183 -49 145 -897 -49 151 -897 -13 -897 -897 219 -897 -897 183 -897 -897 -897 183 -897 -897 -897 -897 187 -13 -897 -897 219 -897 -897 183 -897 -897 -897 -897 -13 -897 151 -897 187 -13 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCAACCACATGGTGVCTCACAACCATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 5 E= 1.3e-005 0.000000 0.600000 0.000000 0.400000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.200000 0.000000 0.600000 0.200000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.200000 0.000000 0.800000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.200000 0.400000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.600000 0.000000 0.200000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.800000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCAACCACATGGTGVCTCACAACCATC MEME-5 regular expression -------------------------------------------------------------------------------- [CT]AG[CT][AG][ACT]CCACA[TG][GA][GC]TG[AGC][CA]T[CAT][AG]CAA[CG]CA[TC][CG] -------------------------------------------------------------------------------- Time 1405.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGGGTG MEME-6 width = 8 sites = 55 llr = 513 E-value = 4.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGGGTG MEME-6 Description -------------------------------------------------------------------------------- Simplified A ::::::21 pos.-specific C 1:::::1: probability G :a:a8a:9 matrix T 9:a:2:7: bits 2.2 * * * 2.0 * * * 1.8 *** * 1.5 ***** * Relative 1.3 ****** * Entropy 1.1 ****** * (13.4 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGGGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGGTG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr12:34871027-34871127 - 77 1.12e-05 TCATAAGCAG TGTGGGTG AAATACAAAG chr5:129124015-129124115 + 32 1.12e-05 GGGTTTGCTC TGTGGGTG CTTCAGCTGA chr4:6037111-6037211 + 35 1.12e-05 AAGCCTCGAG TGTGGGTG TGAGTATCAT chr13:45988599-45988699 + 54 1.12e-05 AAAGCAATGG TGTGGGTG TTGTTTCCAT chr2:142599000-142599100 - 57 1.12e-05 CCATCACATC TGTGGGTG GGAAAATGCA chr11:31770194-31770294 - 60 1.12e-05 TGAGGTCAAA TGTGGGTG GGTCTCTTTC chr9:86857547-86857647 + 13 1.12e-05 AGTATTccac tgtgggtg ataccacctc chr9:49722855-49722955 + 68 1.12e-05 AAAGCAGAGT TGTGGGTG GTGCCCACAC chr18:45653319-45653419 - 71 1.12e-05 TCAGCCTTGG TGTGGGTG TAGACATCTG chr2:148334500-148334600 - 76 1.12e-05 ATATCTGGTA TGTGGGTG CTTGGTTTTC chr18:42660355-42660455 + 49 1.12e-05 gtaagaaaca tgtgggtg ttcccagaat chrX:48174873-48174973 + 46 1.12e-05 tgggtgtgca tgtgggtg tgtaggtgtg chrX:162698849-162698949 + 36 1.12e-05 AAGAGTGTAC TGTGGGTG TCAACATCAG chr18:43932815-43932915 - 19 1.12e-05 CCAAATTCAT TGTGGGTG TGGAGACAGC chr3:5315431-5315531 + 67 1.12e-05 gtaaatgttg tgtgggtg ttgtgccagg chr9:29296365-29296465 - 67 1.12e-05 GAAGTTGTCC TGTGGGTG GAGTGTCTGT chr7:131937264-131937364 + 13 1.12e-05 AGATCTGAGC TGTGGGTG GACTTGGTGG chr8:14627270-14627370 - 22 1.12e-05 AGCTCTTCTA TGTGGGTG CTGGAGATGG chr2:96714265-96714365 - 9 1.12e-05 AAGAGCACCC TGTGGGTG TCTTTTAC chr19:32641479-32641579 + 10 2.24e-05 GAAGCACCA TGTGGGAG CATCCACAAG chr12:46040502-46040602 + 21 2.24e-05 AGAAAAGGCA TGTGGGAG TGCAAAGAAG chr7:40529411-40529511 - 1 2.24e-05 GGGATTACTG TGTGGGAG chr12:48020266-48020366 - 59 2.24e-05 GTCTACAAGT TGTGGGAG GAATGTTAGA chr10:111539847-11153994 - 79 2.24e-05 AGAAGGAAAC TGTGGGAG AATTCGAAAG chr15:40038321-40038421 - 21 2.24e-05 ACAGCCTCCC TGTGGGAG GAGTTACAAC chr15:53281630-53281730 - 70 2.24e-05 GTGCTCACAT TGTGGGAG GTGTTGCAGC chr8:35183418-35183518 + 49 2.24e-05 CCTCAGGAGC TGTGGGAG GCATCGGCTG chr5:125763810-125763910 + 66 2.24e-05 agaggcaact tgtgggag tacacccaag chr15:30974933-30975033 - 4 2.24e-05 GCAGGTGCAT TGTGGGAG GCA chr2:105969201-105969301 - 68 2.24e-05 GAAGCAGACA TGTGGGAG GATGTTTTAC chr19:21525763-21525863 + 16 3.11e-05 TACCAGTACA CGTGGGTG TTGAGTTGGT chr9:28094680-28094780 - 30 3.11e-05 AGTGTGAAGA CGTGGGTG ATCTGAAGAT chr18:82988560-82988660 - 63 4.54e-05 TCCTCCAGAC TGTGTGTG AAAGGTTCGT chr16:24536213-24536313 - 27 4.54e-05 ACAGCCACCC TGTGTGTG TCTGCCTGTC chr9:73071180-73071280 - 76 4.54e-05 AAAGACATGC TGTGTGTG GAATACCCAG chr10:43001104-43001204 + 66 4.54e-05 TGTTTCTCTT TGTGTGTG GTTTTGATGG chr7:66466744-66466844 - 54 4.54e-05 TTTTATAGGT TGTGTGTG AATATTCATA chr1:190093295-190093395 - 29 4.54e-05 ACTGCTCATC TGTGTGTG TTAAATATTG chr8:84334333-84334433 + 40 4.54e-05 AGCCAGGGCC TGTGTGTG CAGCTTGGGC chr4:9532651-9532751 - 2 4.54e-05 ACAGATCCTA TGTGTGTG T chr4:58642180-58642280 + 27 5.41e-05 atctacaaaa tgtgggcg cgagtaaaag chr10:99081452-99081552 + 5 5.41e-05 CATG TGTGGGCG AGCTGTTGCT chr1:127340102-127340202 + 75 5.41e-05 GCAGGGCACC TGTGGGCG TGGTTTTGTT chr6:98551805-98551905 + 62 6.85e-05 AGCCCAGAAC TGTGGGTA GGCTGATGTC chr13:68624672-68624772 + 67 6.85e-05 ACAGCTGCCT TGTGGGTA GCTTCCTGCC chr9:47755013-47755113 + 12 6.85e-05 ACCAGATTGA TGTGGGTA GTGAAACGGC chr14:64487061-64487161 - 8 6.85e-05 TTTATGAGCC TGTGGGTA CAAATGA chr4:46770500-46770600 - 8 6.85e-05 TATATGAATC TGTGGGTA GATGGGT chr1:193748035-193748135 + 18 6.85e-05 TCTCTCCATG TGTGGGTA TGCACTGCAA chr10:10919812-10919912 - 57 7.72e-05 TAACCTGCAT CGTGGGAG GGCAGTAGCT chr7:113117112-113117212 - 13 7.72e-05 GCGGCTGTCT CGTGGGAG ATGGACCAGG chr11:93787363-93787463 - 18 1.17e-04 TAGGTGCACA CGTGTGTG CTTGCACATT chr11:42157278-42157378 - 63 1.24e-04 GTTTCTACCA CGTGGGCG GTTCAGAAAC chr4:93357901-93358001 + 3 1.35e-04 TA TGTGTGCG TGCTTTCCTA chr1:155656286-155656386 - 72 1.46e-04 GAGGAGCAAG CGTGGGTA TTTCAGTAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGGTG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:34871027-34871127 1.1e-05 76_[-6]_16 chr5:129124015-129124115 1.1e-05 31_[+6]_61 chr4:6037111-6037211 1.1e-05 34_[+6]_58 chr13:45988599-45988699 1.1e-05 53_[+6]_39 chr2:142599000-142599100 1.1e-05 56_[-6]_36 chr11:31770194-31770294 1.1e-05 59_[-6]_33 chr9:86857547-86857647 1.1e-05 12_[+6]_80 chr9:49722855-49722955 1.1e-05 67_[+6]_25 chr18:45653319-45653419 1.1e-05 70_[-6]_22 chr2:148334500-148334600 1.1e-05 75_[-6]_17 chr18:42660355-42660455 1.1e-05 48_[+6]_44 chrX:48174873-48174973 1.1e-05 45_[+6]_47 chrX:162698849-162698949 1.1e-05 35_[+6]_57 chr18:43932815-43932915 1.1e-05 18_[-6]_74 chr3:5315431-5315531 1.1e-05 66_[+6]_26 chr9:29296365-29296465 1.1e-05 66_[-6]_26 chr7:131937264-131937364 1.1e-05 12_[+6]_80 chr8:14627270-14627370 1.1e-05 21_[-6]_71 chr2:96714265-96714365 1.1e-05 8_[-6]_84 chr19:32641479-32641579 2.2e-05 9_[+6]_83 chr12:46040502-46040602 2.2e-05 20_[+6]_72 chr7:40529411-40529511 2.2e-05 [-6]_92 chr12:48020266-48020366 2.2e-05 58_[-6]_34 chr10:111539847-11153994 2.2e-05 78_[-6]_14 chr15:40038321-40038421 2.2e-05 20_[-6]_72 chr15:53281630-53281730 2.2e-05 69_[-6]_23 chr8:35183418-35183518 2.2e-05 48_[+6]_44 chr5:125763810-125763910 2.2e-05 65_[+6]_27 chr15:30974933-30975033 2.2e-05 3_[-6]_89 chr2:105969201-105969301 2.2e-05 67_[-6]_25 chr19:21525763-21525863 3.1e-05 15_[+6]_77 chr9:28094680-28094780 3.1e-05 29_[-6]_63 chr18:82988560-82988660 4.5e-05 62_[-6]_30 chr16:24536213-24536313 4.5e-05 26_[-6]_66 chr9:73071180-73071280 4.5e-05 75_[-6]_17 chr10:43001104-43001204 4.5e-05 65_[+6]_27 chr7:66466744-66466844 4.5e-05 53_[-6]_39 chr1:190093295-190093395 4.5e-05 28_[-6]_64 chr8:84334333-84334433 4.5e-05 39_[+6]_53 chr4:9532651-9532751 4.5e-05 1_[-6]_91 chr4:58642180-58642280 5.4e-05 26_[+6]_66 chr10:99081452-99081552 5.4e-05 4_[+6]_88 chr1:127340102-127340202 5.4e-05 74_[+6]_18 chr6:98551805-98551905 6.8e-05 61_[+6]_31 chr13:68624672-68624772 6.8e-05 66_[+6]_26 chr9:47755013-47755113 6.8e-05 11_[+6]_81 chr14:64487061-64487161 6.8e-05 7_[-6]_85 chr4:46770500-46770600 6.8e-05 7_[-6]_85 chr1:193748035-193748135 6.8e-05 17_[+6]_75 chr10:10919812-10919912 7.7e-05 56_[-6]_36 chr7:113117112-113117212 7.7e-05 12_[-6]_80 chr11:93787363-93787463 0.00012 17_[-6]_75 chr11:42157278-42157378 0.00012 62_[-6]_30 chr4:93357901-93358001 0.00013 2_[+6]_90 chr1:155656286-155656386 0.00015 71_[-6]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGGTG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGGGTG width=8 seqs=55 chr12:34871027-34871127 ( 77) TGTGGGTG 1 chr5:129124015-129124115 ( 32) TGTGGGTG 1 chr4:6037111-6037211 ( 35) TGTGGGTG 1 chr13:45988599-45988699 ( 54) TGTGGGTG 1 chr2:142599000-142599100 ( 57) TGTGGGTG 1 chr11:31770194-31770294 ( 60) TGTGGGTG 1 chr9:86857547-86857647 ( 13) TGTGGGTG 1 chr9:49722855-49722955 ( 68) TGTGGGTG 1 chr18:45653319-45653419 ( 71) TGTGGGTG 1 chr2:148334500-148334600 ( 76) TGTGGGTG 1 chr18:42660355-42660455 ( 49) TGTGGGTG 1 chrX:48174873-48174973 ( 46) TGTGGGTG 1 chrX:162698849-162698949 ( 36) TGTGGGTG 1 chr18:43932815-43932915 ( 19) TGTGGGTG 1 chr3:5315431-5315531 ( 67) TGTGGGTG 1 chr9:29296365-29296465 ( 67) TGTGGGTG 1 chr7:131937264-131937364 ( 13) TGTGGGTG 1 chr8:14627270-14627370 ( 22) TGTGGGTG 1 chr2:96714265-96714365 ( 9) TGTGGGTG 1 chr19:32641479-32641579 ( 10) TGTGGGAG 1 chr12:46040502-46040602 ( 21) TGTGGGAG 1 chr7:40529411-40529511 ( 1) TGTGGGAG 1 chr12:48020266-48020366 ( 59) TGTGGGAG 1 chr10:111539847-11153994 ( 79) TGTGGGAG 1 chr15:40038321-40038421 ( 21) TGTGGGAG 1 chr15:53281630-53281730 ( 70) TGTGGGAG 1 chr8:35183418-35183518 ( 49) TGTGGGAG 1 chr5:125763810-125763910 ( 66) TGTGGGAG 1 chr15:30974933-30975033 ( 4) TGTGGGAG 1 chr2:105969201-105969301 ( 68) TGTGGGAG 1 chr19:21525763-21525863 ( 16) CGTGGGTG 1 chr9:28094680-28094780 ( 30) CGTGGGTG 1 chr18:82988560-82988660 ( 63) TGTGTGTG 1 chr16:24536213-24536313 ( 27) TGTGTGTG 1 chr9:73071180-73071280 ( 76) TGTGTGTG 1 chr10:43001104-43001204 ( 66) TGTGTGTG 1 chr7:66466744-66466844 ( 54) TGTGTGTG 1 chr1:190093295-190093395 ( 29) TGTGTGTG 1 chr8:84334333-84334433 ( 40) TGTGTGTG 1 chr4:9532651-9532751 ( 2) TGTGTGTG 1 chr4:58642180-58642280 ( 27) TGTGGGCG 1 chr10:99081452-99081552 ( 5) TGTGGGCG 1 chr1:127340102-127340202 ( 75) TGTGGGCG 1 chr6:98551805-98551905 ( 62) TGTGGGTA 1 chr13:68624672-68624772 ( 67) TGTGGGTA 1 chr9:47755013-47755113 ( 12) TGTGGGTA 1 chr14:64487061-64487161 ( 8) TGTGGGTA 1 chr4:46770500-46770600 ( 8) TGTGGGTA 1 chr1:193748035-193748135 ( 18) TGTGGGTA 1 chr10:10919812-10919912 ( 57) CGTGGGAG 1 chr7:113117112-113117212 ( 13) CGTGGGAG 1 chr11:93787363-93787463 ( 18) CGTGTGTG 1 chr11:42157278-42157378 ( 63) CGTGGGCG 1 chr4:93357901-93358001 ( 3) TGTGTGCG 1 chr1:155656286-155656386 ( 72) CGTGGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGGTG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 11.1945 E= 4.5e-001 -1243 -78 -1243 163 -1243 -1243 219 -1243 -1243 -1243 -1243 183 -1243 -1243 219 -1243 -1243 -1243 190 -63 -1243 -1243 219 -1243 -25 -127 -1243 126 -114 -1243 200 -1243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGGTG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 4.5e-001 0.000000 0.127273 0.000000 0.872727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 1.000000 0.000000 0.236364 0.090909 0.000000 0.672727 0.127273 0.000000 0.872727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGGTG MEME-6 regular expression -------------------------------------------------------------------------------- TGTGGG[TA]G -------------------------------------------------------------------------------- Time 1663.07 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGTCAB MEME-7 width = 8 sites = 47 llr = 455 E-value = 1.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGTCAB MEME-7 Description -------------------------------------------------------------------------------- Simplified A ::9:::a: pos.-specific C ::1::a:4 probability G :a:a:::4 matrix T a:::a::2 bits 2.2 * * * 2.0 * * * 1.8 ** **** 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (14.0 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAGTCAG consensus C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAB MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr3:71959375-71959475 - 83 1.43e-05 AACTAATGTC TGAGTCAG ACAGATTGTT chr13:42934772-42934872 + 65 1.43e-05 ATTCCTGTGC TGAGTCAG CAAACATCTC chr13:6165903-6166003 + 12 1.43e-05 GAAAGCCATA TGAGTCAG AACCATGAGT chr19:32641479-32641579 - 49 1.43e-05 GAGGTGCTTG TGAGTCAG TAAACTGTGA chr7:129066827-129066927 + 19 1.43e-05 TCACTTGACT TGAGTCAG TCTAGTTGTG chr12:5254176-5254276 - 44 1.43e-05 CAGCACAGAC TGAGTCAG CGATTGTCAA chr17:45794854-45794954 + 33 1.43e-05 CAGGCCGACA TGAGTCAG TGCACAGCCA chr5:57757564-57757664 + 42 1.43e-05 tcatgtttca tgagtcag ctcgaatgtc chr1:119891096-119891196 + 72 1.43e-05 GCTGTCtgca tgagtcag gatctacccc chr1:7495013-7495113 + 67 1.43e-05 CCACCAGTTA TGAGTCAG AAGCCAGGTA chr6:95218760-95218860 - 77 1.43e-05 CTGTTTCACA TGAGTCAG CCTCTGAGAT chr8:35183418-35183518 - 64 1.43e-05 CCAGCTTTGT TGAGTCAG CCGATGCCTC chr14:121826063-12182616 + 43 1.43e-05 catgaggaaa tgagtcag agaaaggacc chr5:71828951-71829051 - 52 1.43e-05 TATCTATGAA TGAGTCAG CCTAGGAGTT chr13:39834846-39834946 + 63 1.43e-05 ATAATCTCAT TGAGTCAG TCAGTACCAG chr3:149349334-149349434 - 46 1.43e-05 CTCTTCCCAC TGAGTCAG GTTGACCTAA chr11:27006121-27006221 - 52 1.43e-05 TTGCATTTCT TGAGTCAG ACAACCATGG chr7:75008450-75008550 + 62 2.87e-05 CCAAGACACT TGAGTCAC TGCCATCTAA chr1:11788197-11788297 + 60 2.87e-05 TGCCAAAAGA TGAGTCAC TCTTATCCTC chr9:73071180-73071280 + 35 2.87e-05 AGCAGTTCTG TGAGTCAC AGGCTGTTAG chr18:65221214-65221314 + 61 2.87e-05 GCCTACTGCC TGAGTCAC TGGAGATGTC chr4:140278221-140278321 + 45 2.87e-05 CTTCCCAGCC TGAGTCAC TGCTGAGCAA chr1:56904296-56904396 + 73 2.87e-05 CATATGTCTC TGAGTCAC AGCTATGCAA chr1:28870451-28870551 + 74 2.87e-05 ACTATAGAAA TGAGTCAC TTAATTAGCA chr3:27453329-27453429 + 66 2.87e-05 GTGGGAACGC TGAGTCAC GGGATGACTG chr2:59534285-59534385 - 74 2.87e-05 AAGGGAGCTT TGAGTCAC AGTGGTGGGG chr12:85519494-85519594 - 30 2.87e-05 CGTGGATCAC TGAGTCAC CCAGGGAAGA chr10:23448337-23448437 - 83 2.87e-05 ATTGTTTTTC TGAGTCAC TCATTTGAAA chr13:10574885-10574985 - 45 2.87e-05 ACAGGAGTCA TGAGTCAC CCATGAATAT chr10:76648578-76648678 + 1 2.87e-05 . TGAGTCAC ACCAACTTCC chr15:95460097-95460197 + 80 2.87e-05 GAATGCAGGC TGAGTCAC ATCTTTGTGT chr2:96714265-96714365 + 27 2.87e-05 GGGTGCTCTT TGAGTCAC CCTTTCAAAG chr11:22652902-22653002 - 66 4.71e-05 TTTTAACTGC TGAGTCAT CTGTCCAGAT chr12:102532035-10253213 + 68 4.71e-05 CAGAATGTTC TGAGTCAT TGGCACAGGC chr12:48020266-48020366 - 28 4.71e-05 GCTGTTTTAG TGAGTCAT TGCCCATATT chr6:126585763-126585863 + 82 4.71e-05 GGAGGGGATC TGAGTCAT TCTGACAGCA chr10:99081452-99081552 - 76 4.71e-05 GCAAGAAGCC TGAGTCAT CTGCTTATGC chr7:130807627-130807727 + 38 4.71e-05 CACTCTCCAG TGAGTCAT GCACACCAGG chr2:43950210-43950310 - 23 4.71e-05 TTAACTCTCC TGAGTCAT TTTAAACATA chr10:31534981-31535081 - 57 4.71e-05 CCCAGGGGCC TGAGTCAT CTGCACACCA chr10:30003201-30003301 - 1 4.71e-05 CTTGACTATC TGAGTCAT chr13:109171623-10917172 - 62 4.71e-05 TTAGGAAGCA TGAGTCAT GCCTTTGATG chr6:141568065-141568165 + 6 5.83e-05 CCATT TGCGTCAG CGCTAATCCC chr4:137200303-137200403 - 61 5.83e-05 TCTCCACAGA TGCGTCAG CTCTGGACAT chr1:127340102-127340202 - 60 5.83e-05 ACAGGTGCCC TGCGTCAG CCAACAAAAT chr2:140237182-140237282 + 18 6.94e-05 ttagcacaag tgcgtcac agctttcgct chr16:34483951-34484051 - 57 1.06e-04 TGTCTTAATT TGAGTCGC GAAGCCAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAB MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:71959375-71959475 1.4e-05 82_[-7]_10 chr13:42934772-42934872 1.4e-05 64_[+7]_28 chr13:6165903-6166003 1.4e-05 11_[+7]_81 chr19:32641479-32641579 1.4e-05 48_[-7]_44 chr7:129066827-129066927 1.4e-05 18_[+7]_74 chr12:5254176-5254276 1.4e-05 43_[-7]_49 chr17:45794854-45794954 1.4e-05 32_[+7]_60 chr5:57757564-57757664 1.4e-05 41_[+7]_51 chr1:119891096-119891196 1.4e-05 71_[+7]_21 chr1:7495013-7495113 1.4e-05 66_[+7]_26 chr6:95218760-95218860 1.4e-05 76_[-7]_16 chr8:35183418-35183518 1.4e-05 63_[-7]_29 chr14:121826063-12182616 1.4e-05 42_[+7]_50 chr5:71828951-71829051 1.4e-05 51_[-7]_41 chr13:39834846-39834946 1.4e-05 62_[+7]_30 chr3:149349334-149349434 1.4e-05 45_[-7]_47 chr11:27006121-27006221 1.4e-05 51_[-7]_41 chr7:75008450-75008550 2.9e-05 61_[+7]_31 chr1:11788197-11788297 2.9e-05 59_[+7]_33 chr9:73071180-73071280 2.9e-05 34_[+7]_58 chr18:65221214-65221314 2.9e-05 60_[+7]_32 chr4:140278221-140278321 2.9e-05 44_[+7]_48 chr1:56904296-56904396 2.9e-05 72_[+7]_20 chr1:28870451-28870551 2.9e-05 73_[+7]_19 chr3:27453329-27453429 2.9e-05 65_[+7]_27 chr2:59534285-59534385 2.9e-05 73_[-7]_19 chr12:85519494-85519594 2.9e-05 29_[-7]_63 chr10:23448337-23448437 2.9e-05 82_[-7]_10 chr13:10574885-10574985 2.9e-05 44_[-7]_48 chr10:76648578-76648678 2.9e-05 [+7]_92 chr15:95460097-95460197 2.9e-05 79_[+7]_13 chr2:96714265-96714365 2.9e-05 26_[+7]_66 chr11:22652902-22653002 4.7e-05 65_[-7]_27 chr12:102532035-10253213 4.7e-05 67_[+7]_25 chr12:48020266-48020366 4.7e-05 27_[-7]_65 chr6:126585763-126585863 4.7e-05 81_[+7]_11 chr10:99081452-99081552 4.7e-05 75_[-7]_17 chr7:130807627-130807727 4.7e-05 37_[+7]_55 chr2:43950210-43950310 4.7e-05 22_[-7]_70 chr10:31534981-31535081 4.7e-05 56_[-7]_36 chr10:30003201-30003301 4.7e-05 [-7]_92 chr13:109171623-10917172 4.7e-05 61_[-7]_31 chr6:141568065-141568165 5.8e-05 5_[+7]_87 chr4:137200303-137200403 5.8e-05 60_[-7]_32 chr1:127340102-127340202 5.8e-05 59_[-7]_33 chr2:140237182-140237282 6.9e-05 17_[+7]_75 chr16:34483951-34484051 0.00011 56_[-7]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAB MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGTCAB width=8 seqs=47 chr3:71959375-71959475 ( 83) TGAGTCAG 1 chr13:42934772-42934872 ( 65) TGAGTCAG 1 chr13:6165903-6166003 ( 12) TGAGTCAG 1 chr19:32641479-32641579 ( 49) TGAGTCAG 1 chr7:129066827-129066927 ( 19) TGAGTCAG 1 chr12:5254176-5254276 ( 44) TGAGTCAG 1 chr17:45794854-45794954 ( 33) TGAGTCAG 1 chr5:57757564-57757664 ( 42) TGAGTCAG 1 chr1:119891096-119891196 ( 72) TGAGTCAG 1 chr1:7495013-7495113 ( 67) TGAGTCAG 1 chr6:95218760-95218860 ( 77) TGAGTCAG 1 chr8:35183418-35183518 ( 64) TGAGTCAG 1 chr14:121826063-12182616 ( 43) TGAGTCAG 1 chr5:71828951-71829051 ( 52) TGAGTCAG 1 chr13:39834846-39834946 ( 63) TGAGTCAG 1 chr3:149349334-149349434 ( 46) TGAGTCAG 1 chr11:27006121-27006221 ( 52) TGAGTCAG 1 chr7:75008450-75008550 ( 62) TGAGTCAC 1 chr1:11788197-11788297 ( 60) TGAGTCAC 1 chr9:73071180-73071280 ( 35) TGAGTCAC 1 chr18:65221214-65221314 ( 61) TGAGTCAC 1 chr4:140278221-140278321 ( 45) TGAGTCAC 1 chr1:56904296-56904396 ( 73) TGAGTCAC 1 chr1:28870451-28870551 ( 74) TGAGTCAC 1 chr3:27453329-27453429 ( 66) TGAGTCAC 1 chr2:59534285-59534385 ( 74) TGAGTCAC 1 chr12:85519494-85519594 ( 30) TGAGTCAC 1 chr10:23448337-23448437 ( 83) TGAGTCAC 1 chr13:10574885-10574985 ( 45) TGAGTCAC 1 chr10:76648578-76648678 ( 1) TGAGTCAC 1 chr15:95460097-95460197 ( 80) TGAGTCAC 1 chr2:96714265-96714365 ( 27) TGAGTCAC 1 chr11:22652902-22653002 ( 66) TGAGTCAT 1 chr12:102532035-10253213 ( 68) TGAGTCAT 1 chr12:48020266-48020366 ( 28) TGAGTCAT 1 chr6:126585763-126585863 ( 82) TGAGTCAT 1 chr10:99081452-99081552 ( 76) TGAGTCAT 1 chr7:130807627-130807727 ( 38) TGAGTCAT 1 chr2:43950210-43950310 ( 23) TGAGTCAT 1 chr10:31534981-31535081 ( 57) TGAGTCAT 1 chr10:30003201-30003301 ( 1) TGAGTCAT 1 chr13:109171623-10917172 ( 62) TGAGTCAT 1 chr6:141568065-141568165 ( 6) TGCGTCAG 1 chr4:137200303-137200403 ( 61) TGCGTCAG 1 chr1:127340102-127340202 ( 60) TGCGTCAG 1 chr2:140237182-140237282 ( 18) TGCGTCAC 1 chr16:34483951-34484051 ( 57) TGAGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAB MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 11.2949 E= 1.1e-002 -1220 -1220 -1220 183 -1220 -1220 219 -1220 170 -136 -1220 -1220 -1220 -1220 219 -1220 -1220 -1220 -1220 183 -1220 219 -1220 -1220 180 -1220 -336 -1220 -1220 73 96 -40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAB MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.1e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.914894 0.085106 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.978723 0.000000 0.021277 0.000000 0.000000 0.361702 0.425532 0.212766 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAB MEME-7 regular expression -------------------------------------------------------------------------------- TGAGTCA[GCT] -------------------------------------------------------------------------------- Time 1918.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CASTGVCTGCTYTTCCAGAGR MEME-8 width = 21 sites = 18 llr = 264 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASTGVCTGCTYTTCCAGAGR MEME-8 Description -------------------------------------------------------------------------------- Simplified A :9:2:2::11:::22:9:714 pos.-specific C a:622381:6241168:211: probability G :14164218:1:::2::7:66 matrix T ::1621:9137697:21132: bits 2.2 * 2.0 * 1.8 * 1.5 * * * Relative 1.3 ** *** * ** Entropy 1.1 ** *** ** *** * (21.2 bits) 0.9 *** *** ** *** * 0.7 *** * *************** 0.4 *** * *************** 0.2 ********************* 0.0 --------------------- Multilevel CACTGGCTGCTTTTCCAGAGG consensus GACCG TCC AAT CTTA sequence TA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGVCTGCTYTTCCAGAGR MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr6:9557064-9557164 + 17 1.23e-10 cagtttagag cactgactgttcttccagaga ttctgagtta chr18:64772639-64772739 + 66 6.26e-10 tcgttaagaa cacttactgctcttgcagaga ctgagttcag chrX:102476690-102476790 + 1 7.33e-10 . cactgactgcttttccagaag actcaggttc chr15:27962335-27962435 + 51 1.31e-09 gtgccttttt cactggctgctcctctagaga acctaggttc chr9:28748801-28748901 + 14 2.57e-09 atgttaggag cacacactgctcttacagaga acaggggttt chr13:113471202-11347130 + 3 2.61e-08 at cagagcctgtcctaccagtga gaaagaaaat chr4:46762356-46762456 + 24 4.31e-08 TTGTAGCAGG CAGTGTCCGCTTTACCACAGG ATGGAGGAAA chr7:130807627-130807727 + 80 5.23e-08 GGCTGCTGGT CAGCTCCTGCCTTAGCACAGG chr15:11872123-11872223 - 56 1.29e-07 TTCCTTCCAG CAGTCCCTGAGCTAGCAGAGA CCACCTCCTT chr9:112821888-112821988 + 33 1.66e-07 TCTGGATCTG CACTGGCTGTCTTCCCAGCCA CACCTAGAAC chr2:105969201-105969301 - 27 1.81e-07 TAAGAACAGA CACATGGTATTTTTCTAGAGG CAGTCTAGAA chr17:66276705-66276805 + 8 2.12e-07 CGTTGGT CGCGCGGTGCTTTTCCAGTTG TTATGGTGAC chr4:137200303-137200403 - 5 2.30e-07 AGCACCAGCT CACTGGCTGCTTCTCTTGTTG TGTC chrX:164878301-164878401 + 53 2.69e-07 CAAACATGTT CAGCCCCTGCCTTCACACATG AAAGGGTTTT chr6:28955557-28955657 - 27 3.66e-07 CACCAAACGC CAGCGGGTGCGCTTGCATTGG ATCTCCGCCT chr10:23448337-23448437 + 25 5.65e-07 GCAAGTTAGT CAGTTCCTTCTTTTATAGTTG AGCCATCCTG chr3:117992314-117992414 + 80 7.45e-07 AATGGCTGAT CACTGTGGGTTTTTCCACACA chr17:66211509-66211609 + 21 1.33e-06 GCAAGTCCAG CGTAGGCTAATTTTACAGAGG CAAGCCCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGVCTGCTYTTCCAGAGR MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:9557064-9557164 1.2e-10 16_[+8]_63 chr18:64772639-64772739 6.3e-10 65_[+8]_14 chrX:102476690-102476790 7.3e-10 [+8]_79 chr15:27962335-27962435 1.3e-09 50_[+8]_29 chr9:28748801-28748901 2.6e-09 13_[+8]_66 chr13:113471202-11347130 2.6e-08 2_[+8]_77 chr4:46762356-46762456 4.3e-08 23_[+8]_56 chr7:130807627-130807727 5.2e-08 79_[+8] chr15:11872123-11872223 1.3e-07 55_[-8]_24 chr9:112821888-112821988 1.7e-07 32_[+8]_47 chr2:105969201-105969301 1.8e-07 26_[-8]_53 chr17:66276705-66276805 2.1e-07 7_[+8]_72 chr4:137200303-137200403 2.3e-07 4_[-8]_75 chrX:164878301-164878401 2.7e-07 52_[+8]_27 chr6:28955557-28955657 3.7e-07 26_[-8]_53 chr10:23448337-23448437 5.7e-07 24_[+8]_55 chr3:117992314-117992414 7.4e-07 79_[+8] chr17:66211509-66211609 1.3e-06 20_[+8]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGVCTGCTYTTCCAGAGR MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASTGVCTGCTYTTCCAGAGR width=21 seqs=18 chr6:9557064-9557164 ( 17) CACTGACTGTTCTTCCAGAGA 1 chr18:64772639-64772739 ( 66) CACTTACTGCTCTTGCAGAGA 1 chrX:102476690-102476790 ( 1) CACTGACTGCTTTTCCAGAAG 1 chr15:27962335-27962435 ( 51) CACTGGCTGCTCCTCTAGAGA 1 chr9:28748801-28748901 ( 14) CACACACTGCTCTTACAGAGA 1 chr13:113471202-11347130 ( 3) CAGAGCCTGTCCTACCAGTGA 1 chr4:46762356-46762456 ( 24) CAGTGTCCGCTTTACCACAGG 1 chr7:130807627-130807727 ( 80) CAGCTCCTGCCTTAGCACAGG 1 chr15:11872123-11872223 ( 56) CAGTCCCTGAGCTAGCAGAGA 1 chr9:112821888-112821988 ( 33) CACTGGCTGTCTTCCCAGCCA 1 chr2:105969201-105969301 ( 27) CACATGGTATTTTTCTAGAGG 1 chr17:66276705-66276805 ( 8) CGCGCGGTGCTTTTCCAGTTG 1 chr4:137200303-137200403 ( 5) CACTGGCTGCTTCTCTTGTTG 1 chrX:164878301-164878401 ( 53) CAGCCCCTGCCTTCACACATG 1 chr6:28955557-28955657 ( 27) CAGCGGGTGCGCTTGCATTGG 1 chr10:23448337-23448437 ( 25) CAGTTCCTTCTTTTATAGTTG 1 chr3:117992314-117992414 ( 80) CACTGTGGGTTTTTCCACACA 1 chr17:66211509-66211609 ( 21) CGTAGGCTAATTTTACAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGVCTGCTYTTCCAGAGR MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 12.2285 E= 1.3e+000 -1081 219 -1081 -1081 166 -1081 -98 -1081 -1081 134 83 -234 -34 -39 -198 98 -1081 2 134 -34 -34 34 83 -134 -1081 183 2 -1081 -1081 -198 -198 166 -134 -1081 193 -234 -134 148 -1081 -2 -1081 2 -98 124 -1081 83 -1081 112 -1081 -98 -1081 166 -34 -98 -1081 124 -34 134 2 -1081 -1081 183 -1081 -34 175 -1081 -1081 -234 -1081 2 172 -234 124 -198 -1081 -2 -234 -98 148 -34 66 -1081 134 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGVCTGCTYTTCCAGAGR MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 18 E= 1.3e+000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.555556 0.388889 0.055556 0.222222 0.166667 0.055556 0.555556 0.000000 0.222222 0.555556 0.222222 0.222222 0.277778 0.388889 0.111111 0.000000 0.777778 0.222222 0.000000 0.000000 0.055556 0.055556 0.888889 0.111111 0.000000 0.833333 0.055556 0.111111 0.611111 0.000000 0.277778 0.000000 0.222222 0.111111 0.666667 0.000000 0.388889 0.000000 0.611111 0.000000 0.111111 0.000000 0.888889 0.222222 0.111111 0.000000 0.666667 0.222222 0.555556 0.222222 0.000000 0.000000 0.777778 0.000000 0.222222 0.944444 0.000000 0.000000 0.055556 0.000000 0.222222 0.722222 0.055556 0.666667 0.055556 0.000000 0.277778 0.055556 0.111111 0.611111 0.222222 0.444444 0.000000 0.555556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGVCTGCTYTTCCAGAGR MEME-8 regular expression -------------------------------------------------------------------------------- CA[CG][TA][GCT][GCA][CG]TG[CT][TC][TC]T[TA][CAG][CT]A[GC][AT][GT][GA] -------------------------------------------------------------------------------- Time 2162.25 secs. ******************************************************************************** ******************************************************************************** MOTIF RCAGCCTSCCT MEME-9 width = 11 sites = 21 llr = 245 E-value = 5.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCAGCCTSCCT MEME-9 Description -------------------------------------------------------------------------------- Simplified A 3:8:::::::: pos.-specific C :a:19a:59a2 probability G 6::9:::41:: matrix T ::1:::a1::8 bits 2.2 * * 2.0 * * * 1.8 * ** * 1.5 * **** ** Relative 1.3 * **** ** Entropy 1.1 ****** *** (16.9 bits) 0.9 *********** 0.7 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GCAGCCTCCCT consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCCTSCCT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr14:27965453-27965553 + 57 1.17e-07 TTCTAATTTA GCAGCCTCCCT ACGTGTCTAT chr8:79082622-79082722 + 47 1.17e-07 tgcatgctag gcagcctccct agcacgaagc chr15:40038321-40038421 - 62 3.85e-07 CAGCCCCAGA ACAGCCTCCCT GTGGGAGGAG chr9:112821888-112821988 + 1 5.36e-07 . ACAGCCTGCCT CCCAGGCTTT chr14:76767907-76768007 + 77 5.36e-07 TGCTCCGGGA ACAGCCTGCCT ACACATTACA chr15:34279383-34279483 + 30 1.07e-06 TTAGGGAGAT GCACCCTCCCT TCTAGAGCCT chr6:144639304-144639404 + 8 1.07e-06 TGTGGCA GCACCCTCCCT CTGCTGGCTT chr2:168439046-168439146 - 83 1.57e-06 GTTTTGG GCTGCCTGCCT GTCTGGAGGA chr16:97098432-97098532 - 20 1.57e-06 GAGTGAATCC GCTGCCTGCCT CTGAGGGCTT chr9:61745252-61745352 + 67 1.57e-06 GGCTTGTGAT GCAGCCTTCCT TAGTACCGTC chr15:31096134-31096234 + 82 2.02e-06 AGCCAGGGAA CCAGCCTCCCT GACCCATA chr1:139279009-139279109 + 4 3.32e-06 CAA ACAGCCTGGCT ATGCAATCTT chr13:104982181-10498228 - 48 3.32e-06 GGTGAATCGC ACTGCCTGCCT TAAACTATAA chr3:104992683-104992783 - 77 3.83e-06 CTTCAGGCTG GCAGCCTCGCC CTAGTCCCGA chr1:164997588-164997688 + 68 3.83e-06 TGGGTCCATT GCAGCCTCGCC TAAGGGATGA chr3:146318806-146318906 - 2 3.83e-06 CAGCCGCAGC GCAGGCTCCCT G chr16:63707088-63707188 - 45 4.46e-06 TTGCATAGTG GCAGCCTGCGT TTTGCCACAA chr11:86961991-86962091 + 26 4.46e-06 TACTTACCCA GCACCCTGCCC CCACAGTGCC chr9:41585717-41585817 - 34 4.61e-06 CCCACAGCCT GCAGACTCCCT CCTTATAGAA chr13:93405218-93405318 - 79 6.15e-06 AAGTGTTCCC ACGGCCTGCCT CCTACTCGAG chr3:143913673-143913773 - 72 7.94e-06 AGCTTTCTGA ACAGCCTTCCC CAGGAGGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCCTSCCT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:27965453-27965553 1.2e-07 56_[+9]_33 chr8:79082622-79082722 1.2e-07 46_[+9]_43 chr15:40038321-40038421 3.9e-07 61_[-9]_28 chr9:112821888-112821988 5.4e-07 [+9]_89 chr14:76767907-76768007 5.4e-07 76_[+9]_13 chr15:34279383-34279483 1.1e-06 29_[+9]_60 chr6:144639304-144639404 1.1e-06 7_[+9]_82 chr2:168439046-168439146 1.6e-06 82_[-9]_7 chr16:97098432-97098532 1.6e-06 19_[-9]_70 chr9:61745252-61745352 1.6e-06 66_[+9]_23 chr15:31096134-31096234 2e-06 81_[+9]_8 chr1:139279009-139279109 3.3e-06 3_[+9]_86 chr13:104982181-10498228 3.3e-06 47_[-9]_42 chr3:104992683-104992783 3.8e-06 76_[-9]_13 chr1:164997588-164997688 3.8e-06 67_[+9]_22 chr3:146318806-146318906 3.8e-06 1_[-9]_88 chr16:63707088-63707188 4.5e-06 44_[-9]_45 chr11:86961991-86962091 4.5e-06 25_[+9]_64 chr9:41585717-41585817 4.6e-06 33_[-9]_56 chr13:93405218-93405318 6.2e-06 78_[-9]_11 chr3:143913673-143913773 7.9e-06 71_[-9]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCCTSCCT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCAGCCTSCCT width=11 seqs=21 chr14:27965453-27965553 ( 57) GCAGCCTCCCT 1 chr8:79082622-79082722 ( 47) GCAGCCTCCCT 1 chr15:40038321-40038421 ( 62) ACAGCCTCCCT 1 chr9:112821888-112821988 ( 1) ACAGCCTGCCT 1 chr14:76767907-76768007 ( 77) ACAGCCTGCCT 1 chr15:34279383-34279483 ( 30) GCACCCTCCCT 1 chr6:144639304-144639404 ( 8) GCACCCTCCCT 1 chr2:168439046-168439146 ( 83) GCTGCCTGCCT 1 chr16:97098432-97098532 ( 20) GCTGCCTGCCT 1 chr9:61745252-61745352 ( 67) GCAGCCTTCCT 1 chr15:31096134-31096234 ( 82) CCAGCCTCCCT 1 chr1:139279009-139279109 ( 4) ACAGCCTGGCT 1 chr13:104982181-10498228 ( 48) ACTGCCTGCCT 1 chr3:104992683-104992783 ( 77) GCAGCCTCGCC 1 chr1:164997588-164997688 ( 68) GCAGCCTCGCC 1 chr3:146318806-146318906 ( 2) GCAGGCTCCCT 1 chr16:63707088-63707188 ( 45) GCAGCCTGCGT 1 chr11:86961991-86962091 ( 26) GCACCCTGCCC 1 chr9:41585717-41585817 ( 34) GCAGACTCCCT 1 chr13:93405218-93405318 ( 79) ACGGCCTGCCT 1 chr3:143913673-143913773 ( 72) ACAGCCTTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCCTSCCT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.6328 E= 5.8e+000 25 -220 150 -1104 -1104 219 -1104 -1104 153 -1104 -220 -98 -1104 -61 197 -1104 -256 205 -220 -1104 -1104 219 -1104 -1104 -1104 -1104 -1104 183 -1104 112 97 -156 -1104 197 -61 -1104 -1104 212 -220 -1104 -1104 -20 -1104 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCCTSCCT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 21 E= 5.8e+000 0.333333 0.047619 0.619048 0.000000 0.000000 1.000000 0.000000 0.000000 0.809524 0.000000 0.047619 0.142857 0.000000 0.142857 0.857143 0.000000 0.047619 0.904762 0.047619 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.476190 0.428571 0.095238 0.000000 0.857143 0.142857 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 0.190476 0.000000 0.809524 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAGCCTSCCT MEME-9 regular expression -------------------------------------------------------------------------------- [GA]CAGCCT[CG]CCT -------------------------------------------------------------------------------- Time 2400.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GYTDCCATGGSAACA MEME-10 width = 15 sites = 14 llr = 197 E-value = 1.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTDCCATGGSAACA MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::12::6::1:99:6 pos.-specific C :4::a91::25:192 probability G a::4::::a74::11 matrix T :694:13a::11::: bits 2.2 * * * 2.0 * * * 1.8 * * ** 1.5 * * ** ** ** Relative 1.3 * * ** ** *** Entropy 1.1 *** ** *** *** (20.3 bits) 0.9 *** ** *** *** 0.7 *** *********** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GTTTCCATGGCAACA consensus C G T CG C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTDCCATGGSAACA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr11:32119313-32119413 + 58 1.67e-09 AAACCCATTC GTTGCCATGGCAACA GTAGCTGCCA chr13:104529217-10452931 + 59 1.15e-08 CACAATTCCA GCTACCATGGCAACA GCAGCTATGA chr2:79052114-79052214 + 24 1.15e-08 AAATAGATCA GTTACCATGGGAACA TGCCACTGTT chr5:71828951-71829051 - 30 2.49e-08 CAGCCTAGGA GTTGCCATGGTAACA ATCCTCCTTT chr3:99725838-99725938 + 18 2.49e-08 tgctgacaca gcttccttgggaaca agcagagctg chr11:20877633-20877733 + 49 3.33e-08 GCTGGATCCT GTTGCCTTGGCAACC CTTACGATGT chr4:6037111-6037211 - 9 2.16e-07 TCGAGGCTTG GTTTCCATGGTTACA TTTATCCA chr3:149074571-149074671 - 81 2.16e-07 CCACG GTTTCCTTGCCAACG CGTCTGCAAA chr1:190093295-190093395 + 63 2.36e-07 GGAGGAAGGA GCTGCCATGCCAAGA TGCACTGGAG chr13:107407590-10740769 + 69 3.54e-07 GGTACATTTG GTTTCCATGAGAACC GTTTAGCTAA chr13:4666306-4666406 - 68 4.35e-07 AAATGAAGCG GCTTCCCTGGCTACA ATCATCTAAC chr4:34964882-34964982 + 56 7.97e-07 GGGtgtgatg gctgctatgccaacg aaacaagttg chr13:58000956-58001056 - 59 1.50e-06 ACTGGGTCCT GTTTCTTTGGGAAGC TTGCGTTCCC chr16:49909488-49909588 - 39 1.58e-06 ACAAAAGCCT GTAACCATGGGACCA TTCTGGACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTDCCATGGSAACA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:32119313-32119413 1.7e-09 57_[+10]_28 chr13:104529217-10452931 1.2e-08 58_[+10]_27 chr2:79052114-79052214 1.2e-08 23_[+10]_62 chr5:71828951-71829051 2.5e-08 29_[-10]_56 chr3:99725838-99725938 2.5e-08 17_[+10]_68 chr11:20877633-20877733 3.3e-08 48_[+10]_37 chr4:6037111-6037211 2.2e-07 8_[-10]_77 chr3:149074571-149074671 2.2e-07 80_[-10]_5 chr1:190093295-190093395 2.4e-07 62_[+10]_23 chr13:107407590-10740769 3.5e-07 68_[+10]_17 chr13:4666306-4666406 4.3e-07 67_[-10]_18 chr4:34964882-34964982 8e-07 55_[+10]_30 chr13:58000956-58001056 1.5e-06 58_[-10]_27 chr16:49909488-49909588 1.6e-06 38_[-10]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTDCCATGGSAACA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTDCCATGGSAACA width=15 seqs=14 chr11:32119313-32119413 ( 58) GTTGCCATGGCAACA 1 chr13:104529217-10452931 ( 59) GCTACCATGGCAACA 1 chr2:79052114-79052214 ( 24) GTTACCATGGGAACA 1 chr5:71828951-71829051 ( 30) GTTGCCATGGTAACA 1 chr3:99725838-99725938 ( 18) GCTTCCTTGGGAACA 1 chr11:20877633-20877733 ( 49) GTTGCCTTGGCAACC 1 chr4:6037111-6037211 ( 9) GTTTCCATGGTTACA 1 chr3:149074571-149074671 ( 81) GTTTCCTTGCCAACG 1 chr1:190093295-190093395 ( 63) GCTGCCATGCCAAGA 1 chr13:107407590-10740769 ( 69) GTTTCCATGAGAACC 1 chr13:4666306-4666406 ( 68) GCTTCCCTGGCTACA 1 chr4:34964882-34964982 ( 56) GCTGCTATGCCAACG 1 chr13:58000956-58001056 ( 59) GTTTCTTTGGGAAGC 1 chr16:49909488-49909588 ( 39) GTAACCATGGGACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTDCCATGGSAACA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 12.4532 E= 1.6e+001 -1045 -1045 219 -1045 -1045 71 -1045 119 -197 -1045 -1045 172 -39 -1045 71 61 -1045 219 -1045 -1045 -1045 197 -1045 -98 119 -161 -1045 2 -1045 -1045 -1045 183 -1045 -1045 219 -1045 -197 -3 171 -1045 -1045 119 71 -98 161 -1045 -1045 -98 172 -161 -1045 -1045 -1045 197 -61 -1045 119 -3 -61 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTDCCATGGSAACA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 14 E= 1.6e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.357143 0.000000 0.642857 0.071429 0.000000 0.000000 0.928571 0.214286 0.000000 0.357143 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.642857 0.071429 0.000000 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.071429 0.214286 0.714286 0.000000 0.000000 0.500000 0.357143 0.142857 0.857143 0.000000 0.000000 0.142857 0.928571 0.071429 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.642857 0.214286 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTDCCATGGSAACA MEME-10 regular expression -------------------------------------------------------------------------------- G[TC]T[TGA]CC[AT]TG[GC][CG]AAC[AC] -------------------------------------------------------------------------------- Time 2637.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:96423458-96423558 9.40e-01 100 chr17:66211509-66211609 4.12e-03 20_[+8(1.33e-06)]_59 chr6:108316361-108316461 3.92e-02 100 chr14:103292391-10329249 4.31e-01 100 chr2:74098742-74098842 6.48e-02 91_[+7(4.71e-05)]_1 chr1:9100755-9100855 1.63e-13 19_[+5(3.23e-16)]_6_[-2(2.62e-08)]_\ 22 chr12:6996694-6996794 4.08e-02 52_[-2(2.09e-05)]_24 chrX:109134690-109134790 4.25e-02 28_[+1(5.59e-05)]_51 chr5:44727087-44727187 1.15e-01 100 chr15:41162216-41162316 8.84e-02 38_[+3(9.76e-05)]_52 chr15:12796047-12796147 1.69e-01 100 chr2:96714265-96714365 4.77e-05 8_[-6(1.12e-05)]_10_[+7(2.87e-05)]_\ 10_[+9(3.02e-05)]_45 chr10:108927663-10892776 8.22e-07 5_[-4(2.27e-06)]_17_[-1(7.63e-08)]_\ 5_[-4(1.57e-08)]_10 chr1:155656286-155656386 1.05e-02 100 chr9:56505010-56505110 3.83e-04 19_[+3(6.69e-06)]_36_[+4(6.60e-06)]_\ 14 chr11:32119313-32119413 3.18e-06 57_[+10(1.67e-09)]_28 chr2:117450158-117450258 1.32e-03 3_[+3(5.32e-05)]_25_[-1(1.65e-05)]_\ 41 chr12:66724904-66725004 3.69e-01 72_[+3(7.10e-05)]_18 chr6:41112807-41112907 1.62e-02 43_[+2(9.86e-09)]_33 chr10:124249932-12425003 8.29e-02 1_[+1(4.70e-06)]_78 chr3:39965383-39965483 1.26e-02 30_[-3(6.69e-06)]_60 chr12:52748147-52748247 1.45e-04 11_[-8(4.75e-05)]_14_[-1(8.46e-06)]_\ 33 chr1:21694456-21694556 7.61e-01 100 chr2:96717267-96717367 3.92e-03 75_[-1(1.48e-05)]_4 chr9:10389843-10389943 2.25e-01 100 chr14:114567852-11456795 9.48e-05 19_[+1(4.57e-08)]_60 chr8:32538456-32538556 7.57e-02 100 chr2:140237182-140237282 2.90e-02 17_[+7(6.94e-05)]_75 chr15:95460097-95460197 8.38e-05 20_[+3(6.69e-06)]_49_[+7(2.87e-05)]_\ 13 chr8:48221262-48221362 7.56e-05 75_[-1(4.29e-07)]_4 chr4:46762356-46762456 8.85e-07 23_[+8(4.31e-08)]_56 chr12:94878836-94878936 3.27e-01 100 chr9:93150051-93150151 7.17e-02 61_[+3(9.76e-05)]_29 chr1:31440788-31440888 1.56e-01 100 chr10:66631045-66631145 3.66e-02 32_[-3(1.61e-05)]_58 chr8:14627270-14627370 9.33e-03 21_[-6(1.12e-05)]_71 chr10:76648578-76648678 6.86e-06 [+7(2.87e-05)]_4_[-1(1.72e-07)]_4_\ [+7(1.43e-05)]_31_[-9(2.31e-05)]_5_[-7(2.87e-05)] chr5:45359917-45360017 2.78e-01 92_[-6(4.54e-05)] chr14:7839044-7839144 2.92e-02 100 chr3:99725838-99725938 9.57e-06 17_[+10(2.49e-08)]_16_\ [+6(2.24e-05)]_44 chr16:75366704-75366804 1.89e-01 30_[-5(5.39e-05)]_41 chr18:64772639-64772739 1.32e-06 2_[-1(2.27e-05)]_42_[+8(6.26e-10)]_\ 14 chr14:49123424-49123524 6.51e-01 100 chr16:97398352-97398452 5.07e-02 22_[+4(1.58e-05)]_57 chr3:128393187-128393287 2.89e-01 100 chr4:66157403-66157503 1.28e-04 26_[+1(1.72e-06)]_53 chr5:106756775-106756875 1.30e-02 100 chr6:59660997-59661097 1.09e-02 23_[+6(2.24e-05)]_69 chr14:64595117-64595217 1.31e-03 62_[-1(2.23e-06)]_17 chrX:59802542-59802642 3.91e-01 100 chr4:9532651-9532751 2.87e-01 1_[-6(4.54e-05)]_91 chr11:27006121-27006221 2.17e-02 51_[-7(1.43e-05)]_41 chr7:131937264-131937364 4.35e-02 12_[+6(1.12e-05)]_80 chr4:49179451-49179551 7.97e-01 100 chr15:64683590-64683690 1.82e-01 100 chr2:73130848-73130948 8.50e-02 100 chr18:21544844-21544944 5.24e-01 100 chr13:81471329-81471429 1.15e-14 26_[+5(1.91e-18)]_1_[-2(1.79e-07)]_\ 20 chr9:29296365-29296465 2.04e-04 24_[-4(4.99e-05)]_21_[-6(1.12e-05)]_\ 26 chr13:45662272-45662372 8.94e-01 100 chr2:11969862-11969962 4.96e-02 100 chr3:101646856-101646956 5.91e-02 48_[+4(2.98e-05)]_31 chr2:90526455-90526555 6.43e-02 68_[+9(2.49e-05)]_21 chr18:78306073-78306173 8.82e-04 64_[+1(6.71e-06)]_15 chr12:39073597-39073697 8.09e-01 100 chr10:14044441-14044541 5.37e-02 37_[-3(9.76e-05)]_53 chr13:94572379-94572479 2.57e-01 68_[+6(9.15e-05)]_24 chr4:69254088-69254188 1.80e-02 54_[-1(6.71e-06)]_25 chr5:66798187-66798287 2.80e-03 35_[+3(1.22e-06)]_55 chr3:149349334-149349434 5.77e-05 45_[-7(1.43e-05)]_1_[-2(2.18e-07)]_\ 22 chr3:5315431-5315531 1.09e-01 66_[+6(1.12e-05)]_26 chr15:61594306-61594406 3.64e-02 100 chr18:82855520-82855620 1.31e-01 100 chr2:45181512-45181612 7.27e-05 49_[+3(6.69e-06)]_18_[-3(3.10e-05)]_\ 13 chr3:126722948-126723048 1.70e-02 51_[+4(4.02e-05)]_28 chr9:28094680-28094780 7.91e-03 2_[+10(5.26e-05)]_12_[-6(3.11e-05)]_\ 63 chr12:26057495-26057595 7.53e-01 49_[-4(4.65e-05)]_30 chr2:139589882-139589982 4.82e-02 19_[-2(2.63e-07)]_57 chr1:193748035-193748135 1.14e-03 17_[+6(6.85e-05)]_11_[-4(6.60e-06)]_\ 13_[-1(3.42e-05)]_9 chr2:90530402-90530502 3.53e-01 100 chr13:68807504-68807604 3.05e-01 100 chr9:62783160-62783260 3.19e-07 21_[-1(8.75e-07)]_29_[+1(3.78e-05)]_\ 8 chr12:97478053-97478153 4.26e-02 [+4(3.73e-05)]_79 chr6:33101824-33101924 7.52e-01 100 chr14:110041243-11004134 7.26e-01 100 chr2:121633085-121633185 1.05e-01 100 chr9:42189133-42189233 5.69e-02 100 chr3:85495494-85495594 1.37e-02 36_[-3(5.31e-06)]_54 chr8:58971734-58971834 3.56e-03 100 chr15:48048301-48048401 8.10e-01 100 chr13:11111564-11111664 8.10e-03 100 chr18:43932815-43932915 9.19e-05 18_[-6(1.12e-05)]_44_[+8(9.99e-05)]_\ 9 chr8:84334333-84334433 3.53e-05 14_[+10(4.19e-05)]_10_\ [+6(4.54e-05)]_32_[-3(6.50e-05)]_11 chr14:86742456-86742556 1.77e-01 100 chr6:95369363-95369463 3.55e-02 100 chr14:47597757-47597857 1.98e-02 36_[+2(1.47e-07)]_40 chr9:16114565-16114665 3.56e-01 100 chr2:139966257-139966357 7.13e-05 37_[-2(1.98e-07)]_39 chrX:87710574-87710674 6.17e-02 100 chr15:90593877-90593977 4.43e-01 32_[+3(2.32e-05)]_58 chr12:27644958-27645058 1.00e-03 62_[-1(4.96e-07)]_17 chr2:24247776-24247876 6.94e-01 100 chr9:87708096-87708196 1.21e-05 52_[+2(2.05e-10)]_24 chr3:107796160-107796260 1.01e-03 16_[+1(1.48e-05)]_12_[+1(1.15e-06)]_\ 30 chr2:79052114-79052214 4.52e-03 23_[+10(1.15e-08)]_62 chrX:47783188-47783288 4.23e-03 100 chr15:13639106-13639206 4.78e-02 65_[-4(1.67e-06)]_14 chrX:164878301-164878401 3.36e-03 52_[+8(2.69e-07)]_27 chr3:105601071-105601171 8.95e-03 7_[-1(3.09e-05)]_72 chr6:67128998-67129098 8.74e-02 100 chr3:125779457-125779557 2.83e-01 15_[+3(2.32e-05)]_75 chr1:190093295-190093395 7.17e-06 28_[-6(4.54e-05)]_4_[+1(6.15e-05)]_\ 1_[+10(2.36e-07)]_23 chr11:113971806-11397190 8.50e-07 27_[-1(3.06e-09)]_25_[+3(2.32e-05)]_\ 17 chr12:51058668-51058768 1.23e-03 32_[+1(1.83e-05)]_47 chr10:69593201-69593301 3.32e-03 17_[-2(1.09e-07)]_59 chrX:167549626-167549726 2.55e-01 100 chr7:66466744-66466844 3.14e-03 53_[-6(4.54e-05)]_39 chr3:58163709-58163809 4.32e-02 18_[+2(3.48e-07)]_58 chr1:160826911-160827011 2.01e-01 100 chr6:139298295-139298395 4.10e-02 100 chr13:107268909-10726900 2.09e-02 32_[+4(9.84e-05)]_17_[+4(9.22e-05)]_\ 9 chr4:70058813-70058913 1.17e-02 30_[-1(7.43e-05)]_5_[-4(2.01e-05)]_\ 23 chr15:12084065-12084165 9.56e-02 100 chrX:162698849-162698949 8.63e-05 35_[+6(1.12e-05)]_4_[+1(1.33e-05)]_\ 15_[-3(4.00e-05)]_7 chr11:7016893-7016993 4.14e-01 100 chr13:39834846-39834946 2.28e-02 62_[+7(1.43e-05)]_30 chr8:66725303-66725403 1.27e-02 64_[-1(4.61e-05)]_15 chr4:93357901-93358001 2.90e-01 100 chr8:23780039-23780139 7.93e-05 19_[-4(1.80e-07)]_5_[+6(2.24e-05)]_\ 47 chr16:85371754-85371854 5.53e-01 100 chr13:58000956-58001056 2.25e-03 58_[-10(1.50e-06)]_27 chr16:51160411-51160511 9.31e-03 56_[+2(1.87e-06)]_20 chr2:105969201-105969301 4.34e-05 26_[-8(1.81e-07)]_20_[-6(2.24e-05)]_\ 25 chr2:9620491-9620591 4.50e-05 5_[-9(4.69e-05)]_10_[+3(3.49e-05)]_\ 36_[-4(1.21e-06)]_7 chrX:48174873-48174973 1.59e-02 2_[+1(2.23e-06)]_7_[+1(4.16e-06)]_\ 11_[+1(7.54e-06)]_2_[+6(3.11e-05)]_7 chr4:64068111-64068211 2.27e-04 49_[-4(3.08e-06)]_30 chr5:71828951-71829051 1.75e-03 29_[-10(2.49e-08)]_7_[-7(1.43e-05)]_\ 41 chr1:21505958-21506058 3.76e-01 100 chr13:10574885-10574985 9.69e-02 44_[-7(2.87e-05)]_48 chr18:55255744-55255844 9.21e-01 100 chr18:28077669-28077769 1.36e-04 27_[+3(6.88e-07)]_16_[-2(7.06e-07)]_\ 23 chr10:40813998-40814098 2.90e-01 10_[+4(4.02e-05)]_69 chr18:64467954-64468054 1.26e-02 57_[+4(6.60e-06)]_22 chr7:87787555-87787655 3.38e-01 21_[-1(9.79e-05)]_58 chr16:27420901-27421001 7.81e-03 34_[-1(4.17e-05)]_21_[+3(4.59e-05)]_\ 14 chr4:46770500-46770600 2.30e-03 7_[-6(6.85e-05)]_54_[-1(8.75e-07)]_\ 10 chr12:82688580-82688680 8.64e-02 100 chr16:54498494-54498594 4.07e-01 100 chr17:42453932-42454032 8.21e-01 100 chr14:10626781-10626881 8.02e-01 100 chr4:105833499-105833599 2.07e-02 100 chr13:104529217-10452931 3.69e-04 58_[+10(1.15e-08)]_27 chr4:5078720-5078820 2.82e-03 56_[+3(9.76e-05)]_34 chr3:40169194-40169294 1.86e-04 25_[+2(4.50e-05)]_15_[-1(2.35e-07)]_\ 15 chr14:64487061-64487161 6.88e-01 7_[-6(6.85e-05)]_85 chr1:189756298-189756398 2.07e-04 2_[-2(9.46e-06)]_74 chr12:88620110-88620210 1.56e-02 9_[-4(7.22e-06)]_70 chr15:18685447-18685547 9.40e-01 100 chr9:28748801-28748901 3.68e-04 13_[+8(2.57e-09)]_66 chr2:16664991-16665091 7.19e-01 100 chr13:107407590-10740769 4.59e-04 16_[-1(1.83e-05)]_31_\ [+10(3.54e-07)]_17 chr3:101740890-101740990 2.28e-03 73_[-4(8.66e-07)]_6 chr10:90965569-90965669 3.51e-01 100 chr11:81511338-81511438 3.79e-04 57_[+6(4.54e-05)]_35 chr3:26938814-26938914 1.97e-02 2_[-4(1.21e-07)]_77 chr19:44372885-44372985 1.08e-04 4_[+1(2.27e-05)]_42_[+2(1.20e-07)]_\ 9 chr3:5372787-5372887 1.82e-07 15_[-2(2.93e-05)]_11_[+1(3.79e-09)]_\ 18_[+9(5.31e-05)] chr13:109171623-10917172 6.73e-02 61_[-7(4.71e-05)]_31 chr15:93748536-93748636 4.18e-03 68_[-1(3.25e-06)]_11 chr6:28730053-28730153 7.31e-01 100 chr15:17614770-17614870 5.01e-02 40_[+3(6.06e-05)]_50 chr6:35482416-35482516 5.99e-07 12_[+1(1.72e-06)]_5_[-3(8.16e-05)]_\ 11_[+1(9.79e-05)]_20 chr17:70598434-70598534 6.60e-03 37_[-4(7.73e-07)]_9_[-4(2.76e-05)]_\ 12 chr4:104678133-104678233 5.21e-03 82_[+3(9.76e-05)]_8 chr13:93241137-93241237 8.91e-05 51_[+4(1.08e-06)]_7_[+1(2.35e-07)] chr5:66862274-66862374 5.00e-01 100 chr15:50261431-50261531 1.95e-05 38_[+3(1.02e-05)]_1_[-2(2.07e-08)]_\ 27 chr5:36339232-36339332 7.24e-03 29_[-1(4.17e-05)]_50 chr15:30974933-30975033 6.75e-03 3_[-6(2.24e-05)]_24_[-1(3.42e-05)]_\ 44 chr10:23448337-23448437 3.55e-05 24_[+8(5.65e-07)]_37_[-7(2.87e-05)]_\ 10 chr2:122971586-122971686 1.52e-01 3_[+3(8.45e-06)]_87 chrX:104179237-104179337 9.68e-03 5_[+2(2.16e-09)]_71 chr1:158191520-158191620 9.37e-01 100 chr13:81944872-81944972 3.44e-01 100 chrX:85481298-85481398 1.98e-05 12_[-2(4.56e-07)]_45_\ [+10(7.92e-05)]_4 chr7:37809837-37809937 4.90e-04 4_[-1(4.29e-07)]_75 chr16:28538999-28539099 8.87e-01 100 chr6:7732992-7733092 4.40e-03 46_[+2(3.70e-08)]_30 chr15:5000898-5000998 2.02e-02 100 chr19:56690467-56690567 2.76e-03 60_[+3(6.06e-05)]_30 chr19:18972896-18972996 6.45e-02 100 chr12:85519494-85519594 1.01e-01 29_[-7(2.87e-05)]_45_[+7(4.71e-05)]_\ 10 chr2:63266810-63266910 2.17e-01 30_[-2(8.31e-06)]_46 chr17:84113920-84114020 1.71e-03 17_[+1(2.52e-05)]_62 chr8:73313913-73314013 3.68e-03 11_[+1(9.48e-06)]_68 chr13:12083571-12083671 1.47e-02 23_[+6(4.54e-05)]_69 chr5:112850986-112851086 1.95e-06 24_[+1(2.93e-10)]_25_[+4(4.86e-07)]_\ 9 chr15:30890539-30890639 4.47e-03 15_[+1(1.72e-06)]_64 chr13:43193564-43193664 5.58e-01 100 chr14:100026619-10002671 1.71e-01 8_[+4(7.07e-05)]_71 chr5:125763810-125763910 1.63e-02 7_[-3(8.77e-05)]_48_[+6(2.24e-05)]_\ 27 chr4:24218030-24218130 4.00e-01 42_[-8(8.51e-05)]_37 chr2:158204083-158204183 2.89e-05 6_[+3(1.13e-05)]_6_[-2(5.09e-09)]_\ 54 chr5:19746682-19746782 2.04e-02 100 chr11:17082897-17082997 3.88e-02 100 chr17:49064432-49064532 8.07e-01 100 chr1:81316541-81316641 8.89e-08 24_[+2(2.36e-11)]_52 chr14:47751373-47751473 5.99e-04 8_[-6(9.15e-05)]_11_[+2(4.17e-07)]_\ 49 chr10:101614213-10161431 9.12e-02 36_[-10(3.58e-05)]_49 chr5:27326567-27326667 6.54e-04 9_[-4(8.64e-05)]_45_[-1(4.70e-06)]_\ 4 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42_[-3(2.68e-05)]_10_\ [+10(9.74e-05)]_23 chr16:85092683-85092783 3.20e-05 59_[-1(7.63e-08)]_20 chr5:125752458-125752558 8.38e-03 51_[+4(9.84e-05)]_4_[+1(2.04e-05)]_\ 3 chr18:82988560-82988660 4.25e-02 62_[-6(4.54e-05)]_30 chr1:119891096-119891196 1.73e-02 71_[+7(1.43e-05)]_21 chr1:11788197-11788297 1.83e-02 12_[-3(6.88e-07)]_37_[+7(2.87e-05)]_\ 33 chr5:57757564-57757664 3.74e-03 41_[+7(1.43e-05)]_37_[-6(7.72e-05)]_\ 6 chr16:82710795-82710895 8.03e-01 100 chr10:10919812-10919912 1.28e-03 56_[-6(7.72e-05)]_36 chr1:43140825-43140925 1.68e-04 9_[+4(2.55e-05)]_50_[+3(8.16e-05)]_\ 10 chr12:46747460-46747560 2.82e-01 100 chr18:40279227-40279327 2.37e-02 39_[+1(8.15e-05)]_40 chr7:40529411-40529511 7.94e-02 [-6(2.24e-05)]_92 chr11:20877633-20877733 6.71e-04 48_[+10(3.33e-08)]_37 chr11:42157278-42157378 1.04e-02 100 chr14:119489222-11948932 4.00e-03 1_[-1(1.50e-06)]_18_[-1(2.87e-06)]_\ 39 chr5:71976457-71976557 9.58e-03 100 chr16:4495797-4495897 6.68e-05 77_[-1(1.25e-07)]_2 chr15:32656077-32656177 1.93e-03 49_[+4(1.86e-05)]_30 chr1:139279009-139279109 4.82e-02 3_[+9(3.32e-06)]_86 chr9:41474568-41474668 7.09e-04 30_[+2(4.56e-07)]_[+3(2.32e-05)]_36 chr11:93812456-93812556 1.28e-05 20_[-2(1.86e-09)]_9_[-3(2.68e-05)]_\ 37 chr8:112840225-112840325 1.63e-02 72_[+3(3.49e-05)]_18 chr2:170848824-170848924 2.21e-04 45_[+9(2.66e-05)]_14_[-4(3.38e-08)]_\ 9 chr14:96266553-96266653 3.60e-01 100 chr10:66879150-66879250 7.03e-01 5_[-3(8.77e-05)]_85 chr18:63761976-63762076 4.81e-01 100 chr9:112821888-112821988 6.75e-06 [+9(5.36e-07)]_21_[+8(1.66e-07)]_47 chr17:45794854-45794954 1.96e-05 32_[+7(1.43e-05)]_10_[+9(3.83e-06)]_\ 15_[+8(3.30e-05)]_3 chr10:100053941-10005404 6.13e-01 100 chr19:21716579-21716679 6.26e-01 100 chr8:10053410-10053510 1.96e-03 15_[+2(1.09e-07)]_61 chr3:86841027-86841127 3.73e-07 12_[-4(1.03e-05)]_34_[-7(1.43e-05)]_\ 25 chr10:12339225-12339325 4.79e-01 100 chr13:95286950-95287050 1.19e-04 30_[+10(8.23e-06)]_55 chr7:114892853-114892953 1.67e-03 20_[-9(3.02e-05)]_14_[+9(3.42e-05)]_\ 9_[-4(9.84e-05)]_14 chr5:151059730-151059830 3.20e-04 71_[+1(5.97e-06)]_8 chr2:168439046-168439146 8.83e-06 82_[-9(1.57e-06)]_7 chr10:90546628-90546728 6.64e-01 100 chr2:179586981-179587081 7.22e-01 100 chr6:135400249-135400349 4.39e-05 65_[-2(1.44e-08)]_11 chr7:121221085-121221185 8.52e-01 100 chr8:72905399-72905499 3.08e-01 100 chr8:28723352-28723452 4.18e-02 19_[-2(8.93e-05)]_57 chr13:93405218-93405318 2.80e-04 78_[-9(6.15e-06)]_11 chr3:21727855-21727955 5.59e-04 31_[+4(2.27e-06)]_48 chr13:10628412-10628512 8.93e-02 15_[+3(4.59e-05)]_75 chr16:35470022-35470122 3.15e-02 100 chr1:90289831-90289931 5.01e-04 2_[+1(1.00e-06)]_2_[-4(5.75e-05)]_\ 54 chr13:5779410-5779510 1.11e-01 70_[+1(6.15e-05)]_9 chr5:147043149-147043249 4.73e-04 32_[+1(6.76e-05)]_47 chr5:39856519-39856619 4.71e-02 100 chr2:81006806-81006906 2.69e-04 45_[+1(1.06e-05)]_9_[+4(1.85e-06)]_\ 4 chr19:47305006-47305106 2.16e-03 41_[+1(8.46e-06)]_38 chr15:34279383-34279483 4.06e-03 29_[+9(1.07e-06)]_60 chr13:93560242-93560342 3.27e-02 33_[+9(5.31e-05)]_56 chr6:40074439-40074539 1.49e-03 23_[-1(3.68e-06)]_4_[-1(1.25e-07)]_\ 31 chr17:43997509-43997609 6.99e-02 100 chr6:81622734-81622834 2.26e-01 100 chr12:102532035-10253213 8.23e-03 67_[+7(4.71e-05)]_10_[-6(1.12e-05)]_\ 7 chr5:52135375-52135475 1.37e-01 100 chr5:54740132-54740232 2.71e-01 3_[-10(2.50e-05)]_82 chr13:101233396-10123349 7.93e-01 100 chr9:41585717-41585817 5.56e-05 33_[-9(4.61e-06)]_44_[+3(2.32e-05)]_\ 2 chr10:18631629-18631729 7.36e-02 31_[+4(8.66e-07)]_48 chr4:132946316-132946416 5.34e-04 31_[+8(6.37e-05)]_16_[+1(4.29e-07)]_\ 11 chr17:84323223-84323323 2.23e-04 24_[+1(4.29e-07)]_19_[+1(4.61e-05)]_\ 15 chr4:82589441-82589541 4.43e-05 46_[-2(1.47e-07)]_30 chr17:76492872-76492972 1.04e-01 100 chr12:46040502-46040602 2.45e-05 20_[+6(2.24e-05)]_49_[+4(8.64e-06)]_\ 2 chr4:85324701-85324801 1.01e-03 44_[-1(6.71e-06)]_35 chr1:151138297-151138397 4.19e-03 10_[-3(1.22e-06)]_80 chr17:86077944-86078044 3.60e-02 100 chr5:68955060-68955160 9.07e-01 100 chr1:119221775-119221875 1.16e-01 60_[-3(1.93e-05)]_30 chr1:149198948-149199048 7.07e-01 100 chr13:44769769-44769869 9.52e-01 100 chr16:22484323-22484423 2.57e-02 7_[-4(7.56e-05)]_35_[+4(3.40e-06)]_\ 16 chr15:72630635-72630735 2.08e-02 9_[-3(8.16e-05)]_[-3(8.16e-05)]_\ [-3(8.16e-05)]_[-3(8.16e-05)]_[-3(8.16e-05)]_[-3(8.16e-05)]_[-3(8.16e-05)]_\ [-3(8.16e-05)]_11 chr1:117122935-117123035 8.54e-05 28_[-2(1.79e-07)]_48 chr18:82758574-82758674 3.60e-01 100 chr11:20987659-20987759 2.49e-03 26_[-3(1.61e-05)]_64 chr4:66613556-66613656 9.98e-01 100 chr16:63707088-63707188 2.73e-03 44_[-9(4.46e-06)]_45 chr7:75008450-75008550 8.94e-04 4_[-4(2.18e-05)]_36_[+7(2.87e-05)]_\ 31 chr5:44699940-44700040 1.43e-01 100 chr18:36158638-36158738 1.32e-03 100 chr12:88996093-88996193 1.52e-02 40_[-3(8.77e-05)]_6_[-2(4.27e-05)]_\ 20 chr5:24266565-24266665 7.97e-07 22_[+9(2.66e-05)]_23_[+2(1.60e-09)]_\ 20 chr18:32970719-32970819 2.44e-02 39_[-1(2.79e-05)]_40 chr18:68167069-68167169 2.47e-02 72_[+1(6.71e-06)]_7 chr5:101020744-101020844 7.32e-05 29_[+2(5.94e-07)]_47 chr4:82411989-82412089 1.15e-04 45_[+4(8.64e-06)]_34 chr12:5254176-5254276 2.88e-05 43_[-7(1.43e-05)]_10_[-1(3.68e-06)]_\ 18 chr1:138928714-138928814 1.90e-02 44_[+7(2.87e-05)]_48 chr18:40369849-40369949 1.93e-01 6_[-3(4.00e-05)]_27_[+10(7.92e-05)]_\ 42 chr15:62286979-62287079 3.49e-02 4_[-2(1.22e-05)]_72 chr4:44199904-44200004 2.36e-02 52_[+2(9.09e-07)]_24 chr7:129066827-129066927 1.33e-01 18_[+7(1.43e-05)]_74 chr4:128440525-128440625 5.13e-01 100 chr9:46703702-46703802 5.57e-04 52_[+1(1.06e-05)]_27 chr11:109931305-10993140 9.96e-01 100 chrX:137926843-137926943 4.93e-01 77_[-10(5.46e-05)]_8 chr12:13779711-13779811 1.10e-03 78_[-1(6.15e-05)]_1 chr19:48727549-48727649 1.47e-01 100 chr8:87851321-87851421 8.65e-02 51_[+3(4.00e-05)]_39 chr4:116928146-116928246 2.13e-01 100 chr1:25327137-25327237 4.80e-03 35_[-5(2.46e-05)]_19_\ [-10(4.19e-05)]_2 chr17:8727793-8727893 1.27e-05 11_[-1(9.48e-06)]_3_[+2(3.17e-06)]_\ 26_[+6(2.24e-05)]_7 chr9:96678176-96678276 8.35e-03 14_[+8(7.73e-05)]_65 chr13:4666306-4666406 1.80e-02 67_[-10(4.35e-07)]_18 chr13:37415684-37415784 3.60e-02 19_[+1(5.73e-07)]_60 chr18:65102704-65102804 2.12e-08 12_[-2(2.73e-06)]_20_[-1(4.16e-06)]_\ 10_[-3(5.31e-06)]_3 chr18:7481721-7481821 4.35e-01 100 chr4:58642180-58642280 8.44e-02 26_[+6(5.41e-05)]_66 chr15:43446518-43446618 6.08e-03 79_[+1(1.00e-06)] chr1:88443933-88444033 1.71e-01 100 chr19:32641479-32641579 2.39e-07 9_[+6(2.24e-05)]_31_[-7(1.43e-05)]_\ 10_[-1(5.59e-05)]_13 chr15:20546429-20546529 2.41e-01 42_[+4(6.16e-05)]_8_[+4(9.69e-07)]_\ 8 chr13:6165903-6166003 7.38e-03 11_[+7(1.43e-05)]_81 chr13:42934772-42934872 3.66e-03 4_[-1(5.08e-05)]_39_[+7(1.43e-05)]_\ 28 chr10:102102503-10210260 5.92e-04 32_[-4(2.33e-07)]_24_[-6(2.24e-05)]_\ 15 chr15:25269508-25269608 3.06e-07 1_[+1(3.81e-10)]_55_[+4(5.48e-06)]_\ 2 chr1:118759520-118759620 5.50e-06 32_[-2(2.07e-08)]_13_[+4(9.84e-05)]_\ 10 chr13:43010112-43010212 6.37e-01 100 chr5:129124015-129124115 3.50e-04 31_[+6(1.12e-05)]_23_[-8(7.49e-05)]_\ 17 chr2:104363277-104363377 1.58e-01 [+8(8.51e-05)]_79 chr12:34871027-34871127 1.79e-01 76_[-6(1.12e-05)]_16 chr5:146317994-146318094 1.22e-03 100 chr11:67730999-67731099 4.47e-01 100 chr5:48430429-48430529 1.98e-04 29_[+2(4.64e-08)]_47 chr5:31984577-31984677 1.53e-04 7_[-3(4.59e-05)]_9_[+1(6.15e-05)]_\ 53 chr18:73948006-73948106 1.71e-02 67_[+9(9.71e-05)]_22 chr17:30283620-30283720 2.47e-09 3_[-3(4.59e-05)]_14_[-4(9.69e-07)]_\ 10_[+2(6.38e-06)]_18 chr6:93253427-93253527 1.68e-02 100 chr15:31660793-31660893 1.13e-03 45_[-6(2.24e-05)]_47 chr6:98551805-98551905 7.37e-06 8_[+1(4.16e-06)]_2_[-9(3.02e-05)]_\ 19_[+6(6.85e-05)]_31 chr16:34483951-34484051 6.37e-01 100 chr11:96243727-96243827 5.95e-01 100 chr11:22652902-22653002 1.24e-01 65_[-7(4.71e-05)]_27 chr11:65461082-65461182 1.31e-01 76_[-4(7.22e-06)]_3 chr3:71959375-71959475 4.55e-02 82_[-7(1.43e-05)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-40.local ********************************************************************************