******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:123427397-123427497 1.0000 100 chr17:73135297-73135397 1.0000 100 chr6:121424792-121424892 1.0000 100 chr14:106041661-10604176 1.0000 100 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chr19:15052657-15052757 1.0000 100 chr6:140157116-140157216 1.0000 100 chr14:71348267-71348367 1.0000 100 chr5:149320571-149320671 1.0000 100 chr6:8622970-8623070 1.0000 100 chr15:59596540-59596640 1.0000 100 chr9:27361555-27361655 1.0000 100 chr12:52604642-52604742 1.0000 100 chr5:82441286-82441386 1.0000 100 chr19:36000767-36000867 1.0000 100 chr5:44573050-44573150 1.0000 100 chr19:28589143-28589243 1.0000 100 chr1:179645591-179645691 1.0000 100 chr5:51187221-51187321 1.0000 100 chr11:108204184-10820428 1.0000 100 chr19:38771774-38771874 1.0000 100 chr6:21746282-21746382 1.0000 100 chr11:81725624-81725724 1.0000 100 chr10:72025306-72025406 1.0000 100 chr15:13222767-13222867 1.0000 100 chr18:31014386-31014486 1.0000 100 chr17:73491899-73491999 1.0000 100 chr11:85541399-85541499 1.0000 100 chr2:102027405-102027505 1.0000 100 chr1:105180600-105180700 1.0000 100 chr5:27074951-27075051 1.0000 100 chr18:63859905-63860005 1.0000 100 chr7:115745617-115745717 1.0000 100 chr5:144733799-144733899 1.0000 100 chr1:116616345-116616445 1.0000 100 chr14:69994654-69994754 1.0000 100 chr5:128304272-128304372 1.0000 100 chr2:18468029-18468129 1.0000 100 chr2:76070306-76070406 1.0000 100 chr6:51015598-51015698 1.0000 100 chr10:112626460-11262656 1.0000 100 chr13:110627514-11062761 1.0000 100 chr11:112470306-11247040 1.0000 100 chr2:33543957-33544057 1.0000 100 chr17:72669175-72669275 1.0000 100 chr4:153634672-153634772 1.0000 100 chr8:12302214-12302314 1.0000 100 chr5:84681740-84681840 1.0000 100 chr9:28507979-28508079 1.0000 100 chr13:106789003-10678910 1.0000 100 chrX:105391580-105391680 1.0000 100 chr14:11711156-11711256 1.0000 100 chr2:143353363-143353463 1.0000 100 chr8:101262565-101262665 1.0000 100 chr5:78501063-78501163 1.0000 100 chr11:9629955-9630055 1.0000 100 chr19:16386064-16386164 1.0000 100 chr9:64628351-64628451 1.0000 100 chr14:99894655-99894755 1.0000 100 chr15:23581913-23582013 1.0000 100 chr1:164898693-164898793 1.0000 100 chr2:4108238-4108338 1.0000 100 chr5:27402390-27402490 1.0000 100 chr17:70468032-70468132 1.0000 100 chr11:81722189-81722289 1.0000 100 chr2:141302875-141302975 1.0000 100 chr17:43825816-43825916 1.0000 100 chr14:105572261-10557236 1.0000 100 chr1:28976540-28976640 1.0000 100 chr13:34687584-34687684 1.0000 100 chr17:50119520-50119620 1.0000 100 chr10:12437977-12438077 1.0000 100 chr15:27884758-27884858 1.0000 100 chr6:71048398-71048498 1.0000 100 chr3:51611774-51611874 1.0000 100 chr14:29937280-29937380 1.0000 100 chr6:80856744-80856844 1.0000 100 chr13:99837725-99837825 1.0000 100 chr6:9062111-9062211 1.0000 100 chr5:141884333-141884433 1.0000 100 chr2:103186536-103186636 1.0000 100 chr19:20228050-20228150 1.0000 100 chr7:50334941-50335041 1.0000 100 chr17:67119842-67119942 1.0000 100 chr7:54274014-54274114 1.0000 100 chr1:130575999-130576099 1.0000 100 chr10:119318314-11931841 1.0000 100 chr13:57619282-57619382 1.0000 100 chr13:102134126-10213422 1.0000 100 chr10:72399728-72399828 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-sampled -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 6 -maxw 30 -bfile /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/background -dna -psp /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/psp -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.263 C 0.237 G 0.237 T 0.263 Background letter frequencies (from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/background): A 0.273 C 0.227 G 0.227 T 0.273 ******************************************************************************** ******************************************************************************** MOTIF RCRCASVCRCRSACMSACRCRCACACHCAS MEME-1 width = 30 sites = 26 llr = 443 E-value = 1.7e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCRCASVCRCRSACMSACRCRCACACHCAS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5:4:7:4:52416:4:615:5:5161517: pos.-specific C 2819152726153737282a:727192716 probability G 3251143241531323224:43222::224 matrix T 1:::11:1:1::11::::::1:::1:3::: bits 2.1 1.9 * 1.7 * * * 1.5 * * * * Relative 1.3 * * * * * Entropy 1.1 * * * * * * * * * * (24.6 bits) 0.9 * * * * * * * * * * * * * 0.6 ***** ***** * * ******* * *** 0.4 ************************* *** 0.2 ****************************** 0.0 ------------------------------ Multilevel ACGCACACACGCACACACACACACACACAC consensus G A GG GAAGCGCG G GGC T GG sequence C G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCASVCRCRSACMSACRCRCACACHCAS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr5:78501063-78501163 + 23 2.85e-16 caaaacacat acacacacacacacacacacacacacacac acacacacca chr16:50030402-50030502 + 39 2.85e-16 TCTCTGACCT acacacacacacacacacacacacacacac acacacacac chr9:41377368-41377468 + 51 2.85e-16 AAacaccaca acacacacacacacacacacacacacacac acacacacac chr18:5486295-5486395 - 25 2.85e-16 ACACACAGAC ACACACACACACACACACACACACACACAC GAGAACTTGC chr19:20253434-20253534 - 9 2.85e-16 ACACACACAC ACACACACACACACACACACACACACACAC AGAAGCAT chr1:42243611-42243711 + 27 2.85e-16 CCTTTcacaa acacacacacacacacacacacacacacac acacacacac chr6:108307637-108307737 - 39 9.97e-11 GCAAGCAGGC ACGCAGGCAAGCAGGCACACAGGCACGCAC ACACAATCGT chr8:90886665-90886765 - 5 2.67e-10 CATTAGATGC CGGCACACACACACACGCACGGAGACAGAG ACAG chr7:73606741-73606841 + 30 1.42e-09 ACCCAGTGCC GCGCAGCCGCAGAGCGCCGCGCACGAACGC CCCGCTGCGT chr19:55533641-55533741 + 62 1.94e-09 ctccacatga gcgcatgtgtgggcacacacacacacacac TCCAAGATA chr12:13585759-13585859 + 17 1.94e-09 TGTTACCTGC ACACAGCTGCAAATCCAGGCACACACACAC CGCACAGCTG chr4:88938072-88938172 - 12 3.90e-09 CGCGTGGGGA GCGGAGGCGCGGTCCCGCACAGCCACCCGC GCTCGGCCAC chr12:103174861-10317496 - 7 1.99e-08 GGACCCAGGG ACCCAGGGACCCAGGGACCCAGGGACCCAG GGACCC chr16:13447895-13447995 + 17 1.99e-08 GGGCTCCAGG GCGCACCCCACCCCACGCACGCCCTCTGGG GCGCCAGAAG chr18:75342706-75342806 - 70 4.49e-08 C GCGCAGACCCGGCGCCAGGCGGGGACTAGG GCCCGGCCGT chr17:4908066-4908166 + 32 6.59e-08 CCCCTCCGGC GCGCGTGCGCGGTGCGGCCCTCACGCACAC CACCGCCGCC chr11:94160241-94160341 - 50 1.03e-07 AGGGCAGGGA AGGCAGACAAAACCCCACACTGCATCCCAG AAACCACCAC chr2:33543957-33544057 + 19 1.18e-07 TTCATTTCCG CCCGAGCCGAGCCCGCCCGCGCCGGCTCCC TGAAGGCTCC chr1:71775756-71775856 + 37 2.06e-07 TGTGCTTGGG AGACAGGTGAGGACGGCCCCTCAGCCACGC TTGCAGCCAA chr16:72027348-72027448 + 49 2.86e-07 CCAGGGGCCT CCGCAGCCACCAATAGAAGCGCACACTTGG ACCTATTTGT chr4:8647004-8647104 - 65 3.26e-07 CCAGTG CCGCGCAGCCGCCGCGACGTGCGCTCCGAG CGAGCGGGCG chr6:71048398-71048498 - 44 4.74e-07 TTGATGTCAG CCACCCGCGTGGCCCGCAGCGCCCGCCAAG TTTTCCGGGA chr12:52604642-52604742 - 31 1.01e-06 AGTCCCGGCA TGCCGCGCGGGGAGAGAGCCACGAACTCAC CACCTTCCCT chr13:107888521-10788862 + 50 1.01e-06 CCGGCCGGGG TGGCTCGGGGACCCGGACGCGGACGCCGCG GAGCTCGTTG chr12:12420802-12420902 + 3 1.64e-06 GT GCACTGAGCAGCGCCCCGGCACGCCCTGCG TAGCTGCTCC chr9:88522735-88522835 - 27 2.01e-06 ATGAAAAGCC ACGCCCCCACGTACTCTCGCGTCCAATCAG TGACAGAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCASVCRCRSACMSACRCRCACACHCAS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:78501063-78501163 2.8e-16 22_[+1]_48 chr16:50030402-50030502 2.8e-16 38_[+1]_32 chr9:41377368-41377468 2.8e-16 50_[+1]_20 chr18:5486295-5486395 2.8e-16 24_[-1]_46 chr19:20253434-20253534 2.8e-16 8_[-1]_62 chr1:42243611-42243711 2.8e-16 26_[+1]_44 chr6:108307637-108307737 1e-10 38_[-1]_32 chr8:90886665-90886765 2.7e-10 4_[-1]_66 chr7:73606741-73606841 1.4e-09 29_[+1]_41 chr19:55533641-55533741 1.9e-09 61_[+1]_9 chr12:13585759-13585859 1.9e-09 16_[+1]_54 chr4:88938072-88938172 3.9e-09 11_[-1]_59 chr12:103174861-10317496 2e-08 6_[-1]_64 chr16:13447895-13447995 2e-08 16_[+1]_54 chr18:75342706-75342806 4.5e-08 69_[-1]_1 chr17:4908066-4908166 6.6e-08 31_[+1]_39 chr11:94160241-94160341 1e-07 49_[-1]_21 chr2:33543957-33544057 1.2e-07 18_[+1]_52 chr1:71775756-71775856 2.1e-07 36_[+1]_34 chr16:72027348-72027448 2.9e-07 48_[+1]_22 chr4:8647004-8647104 3.3e-07 64_[-1]_6 chr6:71048398-71048498 4.7e-07 43_[-1]_27 chr12:52604642-52604742 1e-06 30_[-1]_40 chr13:107888521-10788862 1e-06 49_[+1]_21 chr12:12420802-12420902 1.6e-06 2_[+1]_68 chr9:88522735-88522835 2e-06 26_[-1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCASVCRCRSACMSACRCRCACACHCAS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCRCASVCRCRSACMSACRCRCACACHCAS width=30 seqs=26 chr5:78501063-78501163 ( 23) ACACACACACACACACACACACACACACAC 1 chr16:50030402-50030502 ( 39) ACACACACACACACACACACACACACACAC 1 chr9:41377368-41377468 ( 51) ACACACACACACACACACACACACACACAC 1 chr18:5486295-5486395 ( 25) ACACACACACACACACACACACACACACAC 1 chr19:20253434-20253534 ( 9) ACACACACACACACACACACACACACACAC 1 chr1:42243611-42243711 ( 27) ACACACACACACACACACACACACACACAC 1 chr6:108307637-108307737 ( 39) ACGCAGGCAAGCAGGCACACAGGCACGCAC 1 chr8:90886665-90886765 ( 5) CGGCACACACACACACGCACGGAGACAGAG 1 chr7:73606741-73606841 ( 30) GCGCAGCCGCAGAGCGCCGCGCACGAACGC 1 chr19:55533641-55533741 ( 62) GCGCATGTGTGGGCACACACACACACACAC 1 chr12:13585759-13585859 ( 17) ACACAGCTGCAAATCCAGGCACACACACAC 1 chr4:88938072-88938172 ( 12) GCGGAGGCGCGGTCCCGCACAGCCACCCGC 1 chr12:103174861-10317496 ( 7) ACCCAGGGACCCAGGGACCCAGGGACCCAG 1 chr16:13447895-13447995 ( 17) GCGCACCCCACCCCACGCACGCCCTCTGGG 1 chr18:75342706-75342806 ( 70) GCGCAGACCCGGCGCCAGGCGGGGACTAGG 1 chr17:4908066-4908166 ( 32) GCGCGTGCGCGGTGCGGCCCTCACGCACAC 1 chr11:94160241-94160341 ( 50) AGGCAGACAAAACCCCACACTGCATCCCAG 1 chr2:33543957-33544057 ( 19) CCCGAGCCGAGCCCGCCCGCGCCGGCTCCC 1 chr1:71775756-71775856 ( 37) AGACAGGTGAGGACGGCCCCTCAGCCACGC 1 chr16:72027348-72027448 ( 49) CCGCAGCCACCAATAGAAGCGCACACTTGG 1 chr4:8647004-8647104 ( 65) CCGCGCAGCCGCCGCGACGTGCGCTCCGAG 1 chr6:71048398-71048498 ( 44) CCACCCGCGTGGCCCGCAGCGCCCGCCAAG 1 chr12:52604642-52604742 ( 31) TGCCGCGCGGGGAGAGAGCCACGAACTCAC 1 chr13:107888521-10788862 ( 50) TGGCTCGGGGACCCGGACGCGGACGCCGCG 1 chr12:12420802-12420902 ( 3) GCACTGAGCAGCGCCCCGGCACGCCCTGCG 1 chr9:88522735-88522835 ( 27) ACGCCCCCACGTACTCTCGCGTCCAATCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCASVCRCRSACMSACRCRCACACHCAS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.6128 E= 1.7e-026 76 -24 25 -183 -1134 183 -24 -1134 49 -98 114 -1134 -1134 202 -156 -1134 142 -156 -98 -183 -1134 114 90 -183 63 2 61 -1134 -1134 169 -56 -124 76 -56 76 -1134 -24 144 -156 -183 63 -98 102 -1134 -124 125 44 -282 108 25 -156 -183 -1134 153 25 -183 63 61 -24 -282 -1134 153 61 -1134 117 -24 -56 -282 -183 176 -56 -1134 76 -56 76 -1134 -1134 208 -1134 -282 87 -1134 76 -124 -1134 161 25 -282 98 2 2 -1134 -183 169 -24 -1134 117 -156 -24 -124 -183 202 -1134 -1134 76 2 -256 -2 -183 161 -24 -282 126 -98 2 -1134 -1134 135 90 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCASVCRCRSACMSACRCRCACACHCAS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 26 E= 1.7e-026 0.461538 0.192308 0.269231 0.076923 0.000000 0.807692 0.192308 0.000000 0.384615 0.115385 0.500000 0.000000 0.000000 0.923077 0.076923 0.000000 0.730769 0.076923 0.115385 0.076923 0.000000 0.500000 0.423077 0.076923 0.423077 0.230769 0.346154 0.000000 0.000000 0.730769 0.153846 0.115385 0.461538 0.153846 0.384615 0.000000 0.230769 0.615385 0.076923 0.076923 0.423077 0.115385 0.461538 0.000000 0.115385 0.538462 0.307692 0.038462 0.576923 0.269231 0.076923 0.076923 0.000000 0.653846 0.269231 0.076923 0.423077 0.346154 0.192308 0.038462 0.000000 0.653846 0.346154 0.000000 0.615385 0.192308 0.153846 0.038462 0.076923 0.769231 0.153846 0.000000 0.461538 0.153846 0.384615 0.000000 0.000000 0.961538 0.000000 0.038462 0.500000 0.000000 0.384615 0.115385 0.000000 0.692308 0.269231 0.038462 0.538462 0.230769 0.230769 0.000000 0.076923 0.730769 0.192308 0.000000 0.615385 0.076923 0.192308 0.115385 0.076923 0.923077 0.000000 0.000000 0.461538 0.230769 0.038462 0.269231 0.076923 0.692308 0.192308 0.038462 0.653846 0.115385 0.230769 0.000000 0.000000 0.576923 0.423077 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCRCASVCRCRSACMSACRCRCACACHCAS MEME-1 regular expression -------------------------------------------------------------------------------- [AG]C[GA]CA[CG][AGC]C[AG][CA][GA][CG][AC][CG][AC][CG]AC[AG]C[AG][CG][ACG]CAC[ATC]C[AG][CG] -------------------------------------------------------------------------------- Time 326.73 secs. ******************************************************************************** ******************************************************************************** MOTIF RCASCTGS MEME-2 width = 8 sites = 108 llr = 942 E-value = 7.0e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCASCTGS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6:a::::: pos.-specific C :a:6a::4 probability G 4::4::a5 matrix T :::::a:1 bits 2.1 * * 1.9 ** * * 1.7 ** *** 1.5 ** *** Relative 1.3 ****** Entropy 1.1 ******* (12.6 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACCTGG consensus G G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr5:128304272-128304372 - 55 1.23e-05 AGAAACTAGA ACACCTGG AGATCTTGAA chr11:42839898-42839998 + 61 1.23e-05 AGTGCCTAGA ACACCTGG TCTGGAGGGC chr19:9066199-9066299 + 37 1.23e-05 ACCAGTCTAG ACACCTGG CTCTCCCAGC chr5:54220872-54220972 + 7 1.23e-05 ACCAGA ACACCTGG CTCAATTTAA chr12:77574327-77574427 + 7 1.23e-05 tgggag acacctgg tttctctgag chr3:51590239-51590339 - 47 1.23e-05 GAATCTGAAA ACACCTGG TCCAAACAAA chr2:92881466-92881566 + 13 1.23e-05 ATGTCATAGC ACACCTGG CTGCCAGGAA chr5:71237278-71237378 + 59 1.23e-05 TGGATTCTGA ACACCTGG AATGGCTGAA chr5:64061613-64061713 - 27 1.23e-05 TTTTATCCGC ACACCTGG CACCAGAATT chr2:161517704-161517804 - 41 1.23e-05 ACATGTGGCC ACACCTGG CAGCCACAAC chr2:77345813-77345913 - 34 1.23e-05 CAAGAACTCC ACACCTGG GGAGATGGGG chr1:122845233-122845333 + 20 1.23e-05 GGATGAGGAT ACACCTGG TAGCATTTTT chr14:46133561-46133661 - 53 1.23e-05 TCATTGGTAG ACACCTGG GCTGGTTGCA chr16:71259337-71259437 - 32 1.23e-05 TCAATTACGA ACACCTGG AAGAAGCAAT chr11:36700251-36700351 + 13 1.23e-05 GAAGATGCTA ACACCTGG CAATAGTTTT chr15:61179276-61179376 + 46 1.23e-05 gagaaccaaa acacctgg ccgatagatt chr12:30292860-30292960 - 33 1.23e-05 GCTGTAGGGA ACACCTGG GGCAGCCGAT chr1:28976540-28976640 + 25 2.45e-05 AAGAAAAAAG ACACCTGC ATTTTTGAGC chr17:43825816-43825916 - 82 2.45e-05 CAGAATTTTC ACACCTGC AGAGCCTTGT chr6:108307637-108307737 - 87 2.45e-05 GCCCAA ACACCTGC CAGAGCAGGC chr9:26531384-26531484 + 37 2.45e-05 tgaagaaagc acacctgc tttaagatgc chr1:88594316-88594416 - 68 2.45e-05 GGGTTAGCAG ACACCTGC TGTGAGCCCC chr1:143148052-143148152 + 31 2.45e-05 AGGAGACATC ACACCTGC TCAAGTGTTG chr7:117314815-117314915 - 70 2.45e-05 AAAATGAGGC ACACCTGC TTCTGGGGTT chr3:133169746-133169846 + 63 2.45e-05 CGGAGATGGG ACACCTGC GCTTTCCCCT chr7:75431219-75431319 - 41 2.45e-05 TAAAACTTGA ACACCTGC ATCCCAGTCT chr1:112334715-112334815 - 27 2.45e-05 GACTGCCGCC ACACCTGC TCCTCACAAT chr13:117467243-11746734 + 45 2.45e-05 TAATTGCAGC ACACCTGC CAGCATTATG chr2:143353363-143353463 + 13 3.47e-05 GTAGGGACGA GCACCTGG GTACCAAGCC chr6:140666979-140667079 + 9 3.47e-05 TGTGACCA GCACCTGG CAGGCTCTGC chr6:57755853-57755953 - 64 3.47e-05 ACACTTCCAT GCACCTGG AAGTCACTGT chr15:10864182-10864282 + 74 3.47e-05 CCATTCAAGA GCACCTGG GAGAGAACAT chr16:74134953-74135053 - 74 3.47e-05 AGAAACTGAA GCACCTGG GAAAACCCTC chr13:101490856-10149095 - 25 3.47e-05 TCACCAAACT GCACCTGG CACAGAGCAC chr2:20209254-20209354 - 3 3.47e-05 AATACAGGCA GCACCTGG CC chr13:46217999-46218099 - 4 3.47e-05 AATCAGAGGA GCACCTGG CTC chr2:141463788-141463888 + 35 3.47e-05 TTAAATCATG GCACCTGG AGTGTTGAAA chr6:80856744-80856844 - 31 4.49e-05 TAGGAGCTGT GCACCTGC TAGCGCCCTT chr2:102027405-102027505 + 26 4.49e-05 ACTTAGCAGC GCACCTGC TGCATGTtaa chr18:64994448-64994548 - 33 4.49e-05 GTAAATGTGA GCACCTGC TCTGAAATCT chr14:70259337-70259437 - 57 4.49e-05 GTGATATGAA GCACCTGC GTTGTTATTT chr13:29610357-29610457 - 8 4.49e-05 AAAGAGAGTT GCACCTGC CAGGGCT chr11:66246896-66246996 + 66 4.49e-05 CTTGAGAGAG GCACCTGC CTGCGTCTGC chr17:11210834-11210934 - 63 4.49e-05 CAGTGCGGTT GCACCTGC ACCTGCACTG chr6:10978012-10978112 + 8 4.49e-05 CTCATTT GCACCTGC TAAAGGCTCT chr10:126070198-12607029 - 73 4.49e-05 TAAGGGAAAG GCACCTGC TTGGAACTCT chr19:17671324-17671424 + 12 4.49e-05 TGTTTACAGG GCACCTGC CTTACTTCAT chr9:27192001-27192101 + 85 4.49e-05 CGGGAAGCTG GCACCTGC AGGGCTGA chr10:12437977-12438077 - 44 5.72e-05 CAAATTCCAC ACAGCTGG TCACAGTAGC chr6:17187190-17187290 - 38 5.72e-05 TAAATGTGTA ACAGCTGG CAAGCTTCTG chr1:157723870-157723970 - 32 5.72e-05 AGTGTGCAGA ACAGCTGG GGATACCCGC chr10:93688548-93688648 - 54 5.72e-05 TAGTGAGGAC ACAGCTGG CTATTTCGGT chr17:70486807-70486907 - 39 5.72e-05 AACGAAGCTG ACAGCTGG CACTTTTGCT chrX:164896984-164897084 + 51 5.72e-05 GTAATGCCAG ACAGCTGG TGCTGTTTGC chr1:17058761-17058861 + 10 5.72e-05 CCATAGCAG ACAGCTGG CAATGGTAAA chr15:11364002-11364102 + 67 5.72e-05 TAACAAACGA ACAGCTGG TGAACCCCTG chr2:117654475-117654575 + 18 5.72e-05 CACCAAGCTG ACAGCTGG GTCATTTAGC chr10:119318314-11931841 + 67 6.94e-05 GATGCCAGCT ACAGCTGC GTTTTTCATA chr15:23581913-23582013 + 3 6.94e-05 TG ACAGCTGC TTAGGCTATA chr11:85541399-85541499 + 72 6.94e-05 ACAGGTGAAG ACAGCTGC ATCATGGACC chr3:86897053-86897153 - 43 6.94e-05 GTAGTGTGAT ACAGCTGC CAGACTCAGC chr7:111553687-111553787 - 71 6.94e-05 TCTCACGTGT ACAGCTGC TAGGTACAAA chr11:15770179-15770279 + 25 6.94e-05 CTAATTCCAG ACAGCTGC AGACCCAGCT chr12:105475565-10547566 - 60 6.94e-05 CAGCATACAG ACAGCTGC CTGCTCTACC chr12:13585759-13585859 + 50 6.94e-05 CACACACCGC ACAGCTGC TGGGGAAATG chr6:96349184-96349284 - 80 6.94e-05 CCATGGAAAT ACAGCTGC TACATAATCT chr11:36243859-36243959 - 1 6.94e-05 GCCTGATGGT ACAGCTGC chr18:39255440-39255540 - 76 6.94e-05 TTCAGTAAAC ACAGCTGC TTCTGAGATG chr11:94160241-94160341 + 5 6.94e-05 GATT ACAGCTGC AGCCCCGTCT chr10:113946569-11394666 - 75 6.94e-05 TAGACAAACA ACAGCTGC AGTTGAGAAC chr12:97511707-97511807 + 47 6.94e-05 CTCCTCAGCG ACAGCTGC TTTATCACTG chr2:85543578-85543678 + 44 6.94e-05 AAAGAGCCCT ACAGCTGC ACTGCCTTGG chr6:71048398-71048498 + 25 7.96e-05 CAGGGCAGGA GCAGCTGG ATCCCGGAAA chr12:98023499-98023599 - 13 7.96e-05 TGTTGTGACA GCAGCTGG GTAGCCTGCA chr15:78634333-78634433 + 40 7.96e-05 CCTTGAGTCT GCAGCTGG GGCAATCAAT chr1:76301062-76301162 - 68 7.96e-05 TAAATTATCT GCAGCTGG CAAAACCACA chr1:158390846-158390946 - 78 7.96e-05 TGCCTTGTAT GCAGCTGG CCTCTGTGCT chr2:117905347-117905447 + 4 7.96e-05 AAG GCAGCTGG CTGCACATTG chrX:12468241-12468341 + 15 7.96e-05 gtgagctgca gcagctgg agttcttaaa chr2:21554897-21554997 - 11 7.96e-05 GTTTCCGGCT GCAGCTGG GACTCTAAAC chr2:161609742-161609842 - 77 7.96e-05 CCTCTGCCAG GCAGCTGG TCTCCCATAC chr2:9593783-9593883 + 15 8.98e-05 GTACCAGACT GCAGCTGC TTCCAGCCAA chr5:71976508-71976608 + 3 8.98e-05 TG GCAGCTGC TCCTTTTTGT chr16:44238845-44238945 + 85 8.98e-05 GCGAACAGGT GCAGCTGC CGCCCCAG chr11:20011192-20011292 + 52 8.98e-05 ATTGTAATTC GCAGCTGC TTCCCAGCTA chr1:116616345-116616445 - 27 1.05e-04 TTATGCCAAA ACACCTGT TTTACTCTCA chr1:98029224-98029324 + 8 1.05e-04 AAATGAA ACACCTGT GTAATCACCG chr18:40426540-40426640 + 76 1.05e-04 TTTCCTCTCA ACACCTGT CAGAGGGTGG chr4:12570640-12570740 + 23 1.05e-04 TTCTGTTCTA ACACCTGT TAGGTTTAAG chr1:15605485-15605585 - 35 1.05e-04 GGCTTTGAAC ACACCTGT CTCAGGAGGG chr14:88899303-88899403 - 84 1.05e-04 TGGTGGCAC ACACCTGT ATTCCCAGCT chr5:131801019-131801119 - 66 1.17e-04 CATCCTCTTT GCACCTGT ATTTGAAGGG chr13:70714149-70714249 + 12 1.17e-04 CACTGCAGTT GCACCTGT GCAGCTCTGA chr17:79244216-79244316 + 37 1.17e-04 tattataatc gcacctgt gtgttgtttt chr7:74477506-74477606 + 72 1.17e-04 TGTCTTTAGT GCACCTGT GTTCTGACTG chr9:42894435-42894535 + 40 1.17e-04 ATGGCTCTGA GCACCTGT GCCACTTCCC chr9:28887893-28887993 + 3 1.17e-04 TG GCACCTGT AGGGGAAAAA chr2:135124201-135124301 + 48 1.32e-04 ATAATAAGAC ACAGCTGT CAGGTACAGC chr15:58248461-58248561 + 17 1.32e-04 TGAAGTCGTG ACAGCTGT AAGTCATGAT chr1:183252547-183252647 + 49 1.32e-04 TGCACTTCTG ACAGCTGT GTTTGTAGAG chr6:140157116-140157216 - 61 1.56e-04 CTGTGCAGGT ACACGTGG AAGCCAAGCT chr18:61890498-61890598 - 35 1.56e-04 CATGAGCGCT ACACGTGG AGTCAAAAGT chr5:111883725-111883825 + 35 1.68e-04 GAGTTAGAGC ACACGTGC ACACTCCAGC chrX:162736288-162736388 - 35 1.68e-04 CGCACAGTAC ACACGTGC TGCACGGAGA chr4:76779689-76779789 + 15 1.79e-04 CTGCTCCCAA ACACCCGG GACTGCAGGG chr13:57619282-57619382 + 42 1.99e-04 TAAAAACAAA GCACGTGG CTGCTCTGCT chr7:91785683-91785783 - 85 1.99e-04 TAGATTGC ACACCCGC AGGAATCATT chr3:88200809-88200909 + 51 3.00e-04 GGGACTCCAC GCAGCCGG CCGAGGGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:128304272-128304372 1.2e-05 54_[-2]_38 chr11:42839898-42839998 1.2e-05 60_[+2]_32 chr19:9066199-9066299 1.2e-05 36_[+2]_56 chr5:54220872-54220972 1.2e-05 6_[+2]_86 chr12:77574327-77574427 1.2e-05 6_[+2]_86 chr3:51590239-51590339 1.2e-05 46_[-2]_46 chr2:92881466-92881566 1.2e-05 12_[+2]_80 chr5:71237278-71237378 1.2e-05 58_[+2]_34 chr5:64061613-64061713 1.2e-05 26_[-2]_66 chr2:161517704-161517804 1.2e-05 40_[-2]_52 chr2:77345813-77345913 1.2e-05 33_[-2]_59 chr1:122845233-122845333 1.2e-05 19_[+2]_73 chr14:46133561-46133661 1.2e-05 52_[-2]_40 chr16:71259337-71259437 1.2e-05 31_[-2]_61 chr11:36700251-36700351 1.2e-05 12_[+2]_80 chr15:61179276-61179376 1.2e-05 45_[+2]_47 chr12:30292860-30292960 1.2e-05 32_[-2]_60 chr1:28976540-28976640 2.5e-05 24_[+2]_68 chr17:43825816-43825916 2.5e-05 81_[-2]_11 chr6:108307637-108307737 2.5e-05 86_[-2]_6 chr9:26531384-26531484 2.5e-05 36_[+2]_56 chr1:88594316-88594416 2.5e-05 67_[-2]_25 chr1:143148052-143148152 2.5e-05 30_[+2]_62 chr7:117314815-117314915 2.5e-05 69_[-2]_23 chr3:133169746-133169846 2.5e-05 62_[+2]_30 chr7:75431219-75431319 2.5e-05 40_[-2]_52 chr1:112334715-112334815 2.5e-05 26_[-2]_66 chr13:117467243-11746734 2.5e-05 44_[+2]_48 chr2:143353363-143353463 3.5e-05 12_[+2]_80 chr6:140666979-140667079 3.5e-05 8_[+2]_84 chr6:57755853-57755953 3.5e-05 63_[-2]_29 chr15:10864182-10864282 3.5e-05 73_[+2]_19 chr16:74134953-74135053 3.5e-05 73_[-2]_19 chr13:101490856-10149095 3.5e-05 24_[-2]_68 chr2:20209254-20209354 3.5e-05 2_[-2]_90 chr13:46217999-46218099 3.5e-05 3_[-2]_89 chr2:141463788-141463888 3.5e-05 34_[+2]_58 chr6:80856744-80856844 4.5e-05 30_[-2]_62 chr2:102027405-102027505 4.5e-05 25_[+2]_67 chr18:64994448-64994548 4.5e-05 32_[-2]_60 chr14:70259337-70259437 4.5e-05 56_[-2]_36 chr13:29610357-29610457 4.5e-05 7_[-2]_85 chr11:66246896-66246996 4.5e-05 65_[+2]_27 chr17:11210834-11210934 4.5e-05 62_[-2]_30 chr6:10978012-10978112 4.5e-05 7_[+2]_85 chr10:126070198-12607029 4.5e-05 72_[-2]_20 chr19:17671324-17671424 4.5e-05 11_[+2]_81 chr9:27192001-27192101 4.5e-05 84_[+2]_8 chr10:12437977-12438077 5.7e-05 43_[-2]_49 chr6:17187190-17187290 5.7e-05 37_[-2]_55 chr1:157723870-157723970 5.7e-05 31_[-2]_61 chr10:93688548-93688648 5.7e-05 53_[-2]_39 chr17:70486807-70486907 5.7e-05 38_[-2]_54 chrX:164896984-164897084 5.7e-05 50_[+2]_42 chr1:17058761-17058861 5.7e-05 9_[+2]_83 chr15:11364002-11364102 5.7e-05 66_[+2]_26 chr2:117654475-117654575 5.7e-05 17_[+2]_75 chr10:119318314-11931841 6.9e-05 66_[+2]_26 chr15:23581913-23582013 6.9e-05 2_[+2]_90 chr11:85541399-85541499 6.9e-05 71_[+2]_21 chr3:86897053-86897153 6.9e-05 42_[-2]_50 chr7:111553687-111553787 6.9e-05 70_[-2]_22 chr11:15770179-15770279 6.9e-05 24_[+2]_68 chr12:105475565-10547566 6.9e-05 59_[-2]_33 chr12:13585759-13585859 6.9e-05 49_[+2]_43 chr6:96349184-96349284 6.9e-05 79_[-2]_13 chr11:36243859-36243959 6.9e-05 [-2]_92 chr18:39255440-39255540 6.9e-05 75_[-2]_17 chr11:94160241-94160341 6.9e-05 4_[+2]_88 chr10:113946569-11394666 6.9e-05 74_[-2]_18 chr12:97511707-97511807 6.9e-05 46_[+2]_46 chr2:85543578-85543678 6.9e-05 43_[+2]_49 chr6:71048398-71048498 8e-05 24_[+2]_68 chr12:98023499-98023599 8e-05 12_[-2]_80 chr15:78634333-78634433 8e-05 39_[+2]_53 chr1:76301062-76301162 8e-05 67_[-2]_25 chr1:158390846-158390946 8e-05 77_[-2]_15 chr2:117905347-117905447 8e-05 3_[+2]_89 chrX:12468241-12468341 8e-05 14_[+2]_78 chr2:21554897-21554997 8e-05 10_[-2]_82 chr2:161609742-161609842 8e-05 76_[-2]_16 chr2:9593783-9593883 9e-05 14_[+2]_78 chr5:71976508-71976608 9e-05 2_[+2]_90 chr16:44238845-44238945 9e-05 84_[+2]_8 chr11:20011192-20011292 9e-05 51_[+2]_41 chr1:116616345-116616445 0.0001 26_[-2]_66 chr1:98029224-98029324 0.0001 7_[+2]_85 chr18:40426540-40426640 0.0001 75_[+2]_17 chr4:12570640-12570740 0.0001 22_[+2]_70 chr1:15605485-15605585 0.0001 34_[-2]_58 chr14:88899303-88899403 0.0001 83_[-2]_9 chr5:131801019-131801119 0.00012 65_[-2]_27 chr13:70714149-70714249 0.00012 11_[+2]_81 chr17:79244216-79244316 0.00012 36_[+2]_56 chr7:74477506-74477606 0.00012 71_[+2]_21 chr9:42894435-42894535 0.00012 39_[+2]_53 chr9:28887893-28887993 0.00012 2_[+2]_90 chr2:135124201-135124301 0.00013 47_[+2]_45 chr15:58248461-58248561 0.00013 16_[+2]_76 chr1:183252547-183252647 0.00013 48_[+2]_44 chr6:140157116-140157216 0.00016 60_[-2]_32 chr18:61890498-61890598 0.00016 34_[-2]_58 chr5:111883725-111883825 0.00017 34_[+2]_58 chrX:162736288-162736388 0.00017 34_[-2]_58 chr4:76779689-76779789 0.00018 14_[+2]_78 chr13:57619282-57619382 0.0002 41_[+2]_51 chr7:91785683-91785783 0.0002 84_[-2]_8 chr3:88200809-88200909 0.0003 50_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCASCTGS width=8 seqs=108 chr5:128304272-128304372 ( 55) ACACCTGG 1 chr11:42839898-42839998 ( 61) ACACCTGG 1 chr19:9066199-9066299 ( 37) ACACCTGG 1 chr5:54220872-54220972 ( 7) ACACCTGG 1 chr12:77574327-77574427 ( 7) ACACCTGG 1 chr3:51590239-51590339 ( 47) ACACCTGG 1 chr2:92881466-92881566 ( 13) ACACCTGG 1 chr5:71237278-71237378 ( 59) ACACCTGG 1 chr5:64061613-64061713 ( 27) ACACCTGG 1 chr2:161517704-161517804 ( 41) ACACCTGG 1 chr2:77345813-77345913 ( 34) ACACCTGG 1 chr1:122845233-122845333 ( 20) ACACCTGG 1 chr14:46133561-46133661 ( 53) ACACCTGG 1 chr16:71259337-71259437 ( 32) ACACCTGG 1 chr11:36700251-36700351 ( 13) ACACCTGG 1 chr15:61179276-61179376 ( 46) ACACCTGG 1 chr12:30292860-30292960 ( 33) ACACCTGG 1 chr1:28976540-28976640 ( 25) ACACCTGC 1 chr17:43825816-43825916 ( 82) ACACCTGC 1 chr6:108307637-108307737 ( 87) ACACCTGC 1 chr9:26531384-26531484 ( 37) ACACCTGC 1 chr1:88594316-88594416 ( 68) ACACCTGC 1 chr1:143148052-143148152 ( 31) ACACCTGC 1 chr7:117314815-117314915 ( 70) ACACCTGC 1 chr3:133169746-133169846 ( 63) ACACCTGC 1 chr7:75431219-75431319 ( 41) ACACCTGC 1 chr1:112334715-112334815 ( 27) ACACCTGC 1 chr13:117467243-11746734 ( 45) ACACCTGC 1 chr2:143353363-143353463 ( 13) GCACCTGG 1 chr6:140666979-140667079 ( 9) GCACCTGG 1 chr6:57755853-57755953 ( 64) GCACCTGG 1 chr15:10864182-10864282 ( 74) GCACCTGG 1 chr16:74134953-74135053 ( 74) GCACCTGG 1 chr13:101490856-10149095 ( 25) GCACCTGG 1 chr2:20209254-20209354 ( 3) GCACCTGG 1 chr13:46217999-46218099 ( 4) GCACCTGG 1 chr2:141463788-141463888 ( 35) GCACCTGG 1 chr6:80856744-80856844 ( 31) GCACCTGC 1 chr2:102027405-102027505 ( 26) GCACCTGC 1 chr18:64994448-64994548 ( 33) GCACCTGC 1 chr14:70259337-70259437 ( 57) GCACCTGC 1 chr13:29610357-29610457 ( 8) GCACCTGC 1 chr11:66246896-66246996 ( 66) GCACCTGC 1 chr17:11210834-11210934 ( 63) GCACCTGC 1 chr6:10978012-10978112 ( 8) GCACCTGC 1 chr10:126070198-12607029 ( 73) GCACCTGC 1 chr19:17671324-17671424 ( 12) GCACCTGC 1 chr9:27192001-27192101 ( 85) GCACCTGC 1 chr10:12437977-12438077 ( 44) ACAGCTGG 1 chr6:17187190-17187290 ( 38) ACAGCTGG 1 chr1:157723870-157723970 ( 32) ACAGCTGG 1 chr10:93688548-93688648 ( 54) ACAGCTGG 1 chr17:70486807-70486907 ( 39) ACAGCTGG 1 chrX:164896984-164897084 ( 51) ACAGCTGG 1 chr1:17058761-17058861 ( 10) ACAGCTGG 1 chr15:11364002-11364102 ( 67) ACAGCTGG 1 chr2:117654475-117654575 ( 18) ACAGCTGG 1 chr10:119318314-11931841 ( 67) ACAGCTGC 1 chr15:23581913-23582013 ( 3) ACAGCTGC 1 chr11:85541399-85541499 ( 72) ACAGCTGC 1 chr3:86897053-86897153 ( 43) ACAGCTGC 1 chr7:111553687-111553787 ( 71) ACAGCTGC 1 chr11:15770179-15770279 ( 25) ACAGCTGC 1 chr12:105475565-10547566 ( 60) ACAGCTGC 1 chr12:13585759-13585859 ( 50) ACAGCTGC 1 chr6:96349184-96349284 ( 80) ACAGCTGC 1 chr11:36243859-36243959 ( 1) ACAGCTGC 1 chr18:39255440-39255540 ( 76) ACAGCTGC 1 chr11:94160241-94160341 ( 5) ACAGCTGC 1 chr10:113946569-11394666 ( 75) ACAGCTGC 1 chr12:97511707-97511807 ( 47) ACAGCTGC 1 chr2:85543578-85543678 ( 44) ACAGCTGC 1 chr6:71048398-71048498 ( 25) GCAGCTGG 1 chr12:98023499-98023599 ( 13) GCAGCTGG 1 chr15:78634333-78634433 ( 40) GCAGCTGG 1 chr1:76301062-76301162 ( 68) GCAGCTGG 1 chr1:158390846-158390946 ( 78) GCAGCTGG 1 chr2:117905347-117905447 ( 4) GCAGCTGG 1 chrX:12468241-12468341 ( 15) GCAGCTGG 1 chr2:21554897-21554997 ( 11) GCAGCTGG 1 chr2:161609742-161609842 ( 77) GCAGCTGG 1 chr2:9593783-9593883 ( 15) GCAGCTGC 1 chr5:71976508-71976608 ( 3) GCAGCTGC 1 chr16:44238845-44238945 ( 85) GCAGCTGC 1 chr11:20011192-20011292 ( 52) GCAGCTGC 1 chr1:116616345-116616445 ( 27) ACACCTGT 1 chr1:98029224-98029324 ( 8) ACACCTGT 1 chr18:40426540-40426640 ( 76) ACACCTGT 1 chr4:12570640-12570740 ( 23) ACACCTGT 1 chr1:15605485-15605585 ( 35) ACACCTGT 1 chr14:88899303-88899403 ( 84) ACACCTGT 1 chr5:131801019-131801119 ( 66) GCACCTGT 1 chr13:70714149-70714249 ( 12) GCACCTGT 1 chr17:79244216-79244316 ( 37) GCACCTGT 1 chr7:74477506-74477606 ( 72) GCACCTGT 1 chr9:42894435-42894535 ( 40) GCACCTGT 1 chr9:28887893-28887993 ( 3) GCACCTGT 1 chr2:135124201-135124301 ( 48) ACAGCTGT 1 chr15:58248461-58248561 ( 17) ACAGCTGT 1 chr1:183252547-183252647 ( 49) ACAGCTGT 1 chr6:140157116-140157216 ( 61) ACACGTGG 1 chr18:61890498-61890598 ( 35) ACACGTGG 1 chr5:111883725-111883825 ( 35) ACACGTGC 1 chrX:162736288-162736388 ( 35) ACACGTGC 1 chr4:76779689-76779789 ( 15) ACACCCGG 1 chr13:57619282-57619382 ( 42) GCACGTGG 1 chr7:91785683-91785783 ( 85) ACACCCGC 1 chr3:88200809-88200909 ( 51) GCAGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.6628 E= 7.0e-021 118 -1340 74 -1340 -1340 214 -1340 -1340 187 -1340 -1340 -1340 -1340 145 74 -1340 -1340 207 -229 -1340 -1340 -303 -1340 183 -1340 -1340 214 -1340 -1340 84 100 -98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 108 E= 7.0e-021 0.620370 0.000000 0.379630 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.620370 0.379630 0.000000 0.000000 0.953704 0.046296 0.000000 0.000000 0.027778 0.000000 0.972222 0.000000 0.000000 1.000000 0.000000 0.000000 0.407407 0.453704 0.138889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCASCTGS MEME-2 regular expression -------------------------------------------------------------------------------- [AG]CA[CG]CTG[GC] -------------------------------------------------------------------------------- Time 636.84 secs. ******************************************************************************** ******************************************************************************** MOTIF CCKSCYTCTCCCYCBCYMYYC MEME-3 width = 21 sites = 106 llr = 994 E-value = 1.7e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCKSCYTCTCCCYCBCYMYYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:1:1::2:122:::13:11 pos.-specific C 652475392977464655556 probability G 2:5311:::1:111232:111 matrix T 223223716:21324132432 bits 2.1 1.9 1.7 * 1.5 * * Relative 1.3 * * Entropy 1.1 * * * (13.5 bits) 0.9 * * ** ** 0.6 * * * ** *** * * * 0.4 *** ******** * * **** 0.2 ********************* 0.0 --------------------- Multilevel CCGCCCTCTCCCCCCCCCCCC consensus GTTG TC T TGTATT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKSCYTCTCCCYCBCYMYYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr6:28203498-28203598 + 73 3.67e-09 gcccccatca cccccctctctccccctcctc tctctgt chr10:69573981-69574081 - 6 6.63e-09 GGGCTGCTTG CCGCCTTCTCCCTCTCTTCTC TTTCT chr16:72093008-72093108 + 48 2.03e-08 tatcccaaaa gttccccccccccctccaccc cagtccccta chr9:28075587-28075687 - 3 3.43e-08 TGCCAATGCT TCGGCCTCTCCCTTCCCACTC TG chr8:31031675-31031775 - 4 4.08e-08 ACCTGTGCCA GCCTCCTCACCCCCCCGCCCC CGC chr16:78237561-78237661 + 21 4.83e-08 cttctattct cttccccccccccccgccccg ccctctcctt chr2:77345813-77345913 + 2 4.83e-08 G CCTTTCTCTCACCCCCCCCCC CCCCCATCTC chr2:33543957-33544057 - 77 1.09e-07 TCC CCGCGCCCCCCCCCCGTACCC CCTCCCCCAG chr2:10519543-10519643 + 52 1.75e-07 ccctgtgttt ccttcccctctcctcccatcc cttcccctcT chr14:67123874-67123974 - 7 2.37e-07 TGCTGCTGCT GCTGCTCCTCCCACTCTCCCT CTTGCT chr4:81005654-81005754 + 74 2.37e-07 CTCAGCCAAT CCTTCCTCTCACACTCTACCC AACATT chr12:107972788-10797288 - 61 3.68e-07 GACTGACTGT CTGGCTTCTCCACCTCACCCT GGGTAGATCT chr8:122749384-122749484 - 4 3.68e-07 CCTCCCAGCT CCTTCCTCCCACTCTGCCTCC CAA chr17:70486807-70486907 + 72 4.26e-07 TGCTAATGCC CAGGCCCCTCCCTCTCTATCA CCCTGCGG chr2:92881466-92881566 - 27 6.50e-07 GCGCTGAGGT CAGGTGCCTCCCCCTCCTTCC TGGCAGCCAG chr2:122558266-122558366 - 79 6.50e-07 C CCTCCCTCCCTCTCCTCCCTT CAGTACTGGC chr16:6448195-6448295 + 23 7.47e-07 ACCTGACCCT CCTCCACCACTCCCGCCCCCT TTGCCTGCTG chr2:171586428-171586528 + 23 7.47e-07 GCTTGGCCAG CCCTCCTCCCTCCCTCCCTTT GCCAGGCTCT chr12:54567114-54567214 + 58 9.80e-07 GCCTTTCAGA CTGCTTTTTCCCCTCCCACCC TGTGACTCCT chr4:125696179-125696279 + 33 9.80e-07 CTGATTGGAC GCCCCGCCTCCCTCCCTCCTT GCAGAGATGC chr9:26700121-26700221 + 5 1.12e-06 GAGC CTGCCTTCACCCCCTCAACAC CTTGTGTATT chr17:4908066-4908166 + 64 1.28e-06 ACGCACACCA CCGCCGCCACCCCTGGCCGCC GAGGCCTCCG chr12:99510564-99510664 - 16 1.28e-06 GGGCTTCCAT CCTCCCTCTGCCCCTGTCTTG TGCTAATGTA chr4:50008561-50008661 - 78 1.28e-06 TT CAGCCTTCTCTCCTCCACCCT CCATTTTTTT chr15:12918244-12918344 + 14 1.46e-06 TGACTTACAG CCGTCCTCTCCCATCGGATCT GGTCCTTTCC chr14:69994654-69994754 - 52 1.66e-06 GCGGGGGTAG GAGTTCCCTCCCCCTGTACCC AGGCCTCCCA chr13:110627514-11062761 - 62 1.89e-06 GATTTAACAG CCTCCTTCACACGCTTCCTCC TAGGGCTGGA chr1:15605485-15605585 + 5 1.89e-06 CGCC CTTGCCTCACCCTGTGCTCTC CCTCCTGAGA chr3:123508246-123508346 - 65 1.89e-06 TGGTTTCAGC TCGGCTTTTCCCCGCCCACCT CCACAGCCCG chr18:39255440-39255540 + 14 2.14e-06 ATGGTGGCTC TCGCTCTCTCACCCCTCCCGC CTCGTGCTTG chr10:60952519-60952619 + 56 3.12e-06 AATGACTGTA GAGGTCCCTCCCACCGCTTCC CCACAGCATA chr5:27074951-27075051 - 7 3.52e-06 ATCACACACT CCTGCTCTTCCCACGCCAGCC AGATCA chr11:98294611-98294711 - 54 3.52e-06 CCCCGCAGAT GCCGCTTCCCTCCCCCTTCCT TGGCCGGGGC chr5:4851570-4851670 - 42 3.97e-06 TACAAATGGG TTTCCCCCTCCCATCCTCTGC TATTTCATGG chr12:107927927-10792802 + 59 3.97e-06 GGATGAATTT CCTCTCCCCCCCACTTCCGCC ATATTCCCTT chr4:88938072-88938172 + 62 4.48e-06 cgccgccgag ccgcctcgtccctcggctccc accaacccca chr13:53850119-53850219 - 74 4.48e-06 GGCAAA GCGGCTTCTCCTTCCCTTCCA AAGCACAGCG chr3:88200809-88200909 + 79 4.48e-06 AAGCCTTCGG CCGGCCTTCCCTGCGCCCCGC A chr13:10086459-10086559 - 42 5.04e-06 CTTGAGGACA CAGACTTCACCCGCGCCATGC TTTCAGAGAC chr13:46217999-46218099 + 56 5.04e-06 CAGGAGCCGA GATGCTTCCCCCTGTCTTCCC CCACTGTCCC chr2:171121796-171121896 - 30 5.67e-06 CATCTCTTAC CCTATCTCCCCACCCCCAGCC AATCAGGTGA chr3:16760128-16760228 + 48 7.14e-06 GATATCAGAT CTTATCTCTCTCTCTCTCTTC TGGTAACCTA chr10:69636175-69636275 + 80 7.14e-06 ACGGAAGAGC TCCCCCTCACCTCATCCACCC chr17:70468032-70468132 + 28 8.00e-06 CAACCTGGGC CCCTCCTCACCACCTTCACCA TCAGTGTGCA chr7:74271553-74271653 - 4 8.00e-06 TTCTCTCATT CCTACTTCTCCCCAACTCCTC CAA chr2:9593783-9593883 - 36 8.95e-06 TCCTGAGCCT CTGCCTTCACCAGCCGCCTTG GAGTTGGCTG chr10:70380006-70380106 - 58 8.95e-06 GCTGGCCCAT CTTCTCTCTCCCACTGGTTGC TTCTAGTCTC chr15:12919882-12919982 - 6 1.00e-05 TTTGTAATCC CTGCTCTCTCTCCTACCACCT CGCAC chr10:11449955-11450055 + 64 1.12e-05 TGTAATGCAT GCTACGTCTCCACCCCTCTCA TGAACGAAAT chr2:159475970-159476070 + 74 1.12e-05 CAGGGAACTA TCTCTTTCTCCCCTCTCATCT GTGAGG chr17:48776296-48776396 + 8 1.25e-05 TCTCTGG TTGGCCCCTCCCTGTCTGCTC TCTCACAGCA chr13:42102878-42102978 - 56 1.25e-05 TCCTGGGAGT CCTCCCCCACTACCTCTCCAT GGCAACCGCA chr11:81722189-81722289 + 20 1.39e-05 GAGCCATGCT CCCTATTCTCCAACCCCACCC CCATAACCTG chr11:85541399-85541499 - 39 1.39e-05 TCACCTGTGA TTGTCCTCACACACCCGCCTC TGAAAGCCAC chr10:25677875-25677975 + 34 1.39e-05 TTCTGGCAAC CACTCCTCCCCCCAGCCTCCT ATCCTTTTCA chr6:84775842-84775942 - 58 1.39e-05 CTGCCTGAGG CCTGCCCTTCCCTCTGACTCA CTGGAGTCTC chr1:187651301-187651401 - 39 1.55e-05 TTTAAATCCT GCTGCTTCTGCCTCCGTCGTC GCCGCAGCCG chr2:132221524-132221624 - 44 1.72e-05 TCAACGCCAG TTCCCTTTTCCCCCTCCCTGG GGAGAAGATT chr12:26877578-26877678 - 50 1.91e-05 GTCCCTCTGT CTGGCACCACCCTGCTTCCTC TCAGGTTGCC chr3:135132194-135132294 + 24 1.91e-05 ACCTAAATTC CCTACCTCTCCCTTTTTAGTC TCCAGCTTCT chr5:54191565-54191665 + 4 2.12e-05 CTT CCCGCATCTCCATTTCCTCTT ATTTCCTTCT chr1:42243611-42243711 + 4 2.12e-05 ACA CACGCGTCTCCCTCCTTTcac aaacacacac chr6:121424792-121424892 - 78 2.12e-05 CT CCCGCTTCAGCTGCGCCCCTC CACCCTGGCC chr13:57619282-57619382 + 54 2.35e-05 ACGTGGCTGC TCTGCTCCTCTTCCCCCATTT GATCTAAAAA chr1:98011043-98011143 + 28 2.35e-05 CCAATTCACG GTTCTCTTTCCAACCCCATCC ACTCGATCCT chr14:70259337-70259437 + 3 2.60e-05 gc gctgctcctcccaaagcctcc caCATCAGAA chr14:123008424-12300852 - 25 2.60e-05 TGGCTTAGTG CCTCCATTTCCCATCCCATTT AATTTATGCA chr18:75342706-75342806 - 39 2.60e-05 GCCCGGCCGT GAGCCGTCTGCCCGGCGCCGC GCTCGGGTCT chr14:49487980-49488080 - 24 2.60e-05 TTATTTTGCT TATGCCTCTCCGTCACTATCC ATCACTGAAA chr9:42894435-42894535 + 4 2.60e-05 GCA CAGGCCTCACTCGGTGCCTCA GGCAAATGGC chr19:26369175-26369275 - 58 2.60e-05 TGGTTACACA CCTACCTCTGTCCCTTTTTCC CTGCTACCTT chr7:73606741-73606841 - 80 2.88e-05 . CCGCCGCCGCCCTCCCCCATC AGTTCCGCCC chr3:40371220-40371320 - 71 3.18e-05 CTGCTGGTG TCTCTCTCCCACCTTCGCTTC TTGTACATTC chr12:52604642-52604742 - 67 3.51e-05 CACAGAAGTT GAGGCTTCACCGCCCGCAGTC CCGGCATGCC chr2:51768578-51768678 - 19 3.51e-05 AGAGCTAGAA CAGTCCCCTCCATCTGGCGCG CACGCGGGTG chr3:51590239-51590339 - 1 3.51e-05 CCATTAACTC TCTCCTTCCCCTGCCCGCTAC chr13:85513640-85513740 + 2 4.27e-05 T CTCCTTTCTCCTGTGCTCCTC TAGCTCCTTG chr6:80856744-80856844 - 67 4.70e-05 GTTCCAGTAA GTGCTTTCTCCTTCGTCCCTT TACAACTCTG chr2:76070306-76070406 - 42 4.70e-05 AAGAAGAATC CTGCCTCCTCCACGTGACTTG AAATTTGATC chr16:28511313-28511413 - 12 4.70e-05 CCCAAGTGAT TTGACTCCCGCCCTGCCCTCC ATAGTTTCCA chr11:61619703-61619803 + 42 5.17e-05 TCCTGGCCAA CTGCCCTCGCGACCGCGCCCT GTGATGCTGG chr3:85923933-85924033 + 2 5.68e-05 A CCCGCCTCTCCAGGGTTCCTA CTGTCTGCTG chr14:46133561-46133661 - 73 5.68e-05 ATGTGTT CCGTCTTCTCTTTATCACTCC ATTCATTGGT chr4:53512582-53512682 + 12 6.23e-05 ACAGCTTCTA CAGCCATCTCAACCTCGTCAC GTGGGGTTGA chr3:83344347-83344447 - 35 6.84e-05 CTCCTTATAA TGGGCCCCTCCCCGGGCATGC TTCCTGTATT chr9:88522735-88522835 - 70 6.84e-05 GAGGTCCAAG GCGCGCGCTCCCACGCGTTGC TTCATGAAAA chr14:108702335-10870243 - 10 7.49e-05 AGATTCAACG CTGCCCTCTCGTTCCTCATCA GTTTTTCAA chr16:13447895-13447995 - 59 7.49e-05 CTCCTGGGAA CAGGGATCCCCCCGGGGCCGC GCCTTCTGGC chr8:29110710-29110810 - 4 8.97e-05 ATCCGGAGTG TATGTATCTCTCTCTCTCTCT CTC chr11:94160241-94160341 + 14 8.97e-05 TACAGCTGCA GCCCCGTCTCTCCTGCTGTGC TGTGAGTGGT chr5:99441777-99441877 - 70 8.97e-05 TCTAACCTCT TAGCCGTTTCTCTTGCGCTCC ATAATTGAAC chr13:107888521-10788862 + 5 9.81e-05 GAGA GCGGCGCCCCTCAGCGGCCCG GCCGGCCGTC chr4:8647004-8647104 - 13 1.17e-04 CTGAGGAGGC CCGGCTTCCGCAGCCGGCCGG TCCCTGTGAT chr9:46443397-46443497 - 69 1.17e-04 CTCTTTTCTT CTCGGCGCTCCCTTCTCCCCG ATTAATCAGC chr3:154816640-154816740 - 79 1.17e-04 C CACCCTGCACCAACCGACTCC ACTGTTTGTG chr15:27959633-27959733 - 56 1.39e-04 GGTTGGTGGC CCGTCCCCACCGTGTGCACAT TTCAGTCTGA chr14:8608514-8608614 - 42 1.51e-04 GAGAGGCATC CTGTCACCTCACACGGTACCA GAGCTCCACC chr17:73135297-73135397 - 14 1.64e-04 ACTTCTGAGT CCGCGTTTTCCCGCTGAACTG TAAGATATGC chr5:27402390-27402490 + 31 1.78e-04 CTCACACTGC CTGTGCTTACTCCCGCTCCAC CTCACCAGTG chr14:25800141-25800241 + 27 1.94e-04 GGGCACAGTC GCTGGTCCTCCCCTACTGTCC AAAACCGGTA chr13:99579506-99579606 - 45 2.28e-04 CCCAGGTTCG GAGCCGTCACCATGGGGACCG AAGCCTGTGA chr6:145340580-145340680 + 67 2.67e-04 CTGAGAGCAC GTCACCGCCCCGCCGGCTTCC GATTGGCCGC chr7:64574199-64574299 - 34 3.63e-04 GCTAACTGCA CAGACCTCTGCGAGTCATCCC GTGTGTTTCC chr10:82178184-82178284 + 75 4.54e-04 ACCATGGTGA GCGGGACCGCCGTCCCCACGC GGGCG chr1:7397664-7397764 + 50 1.04e-03 GCAGGAAGTC CCGCCCGCTCGGTCGTGATTG ACGGCAGCGG chr4:12212261-12212361 - 23 1.42e-03 TCCCTATGTA CCGCAGTCTCAAGTTCCGCGC GATTGGATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKSCYTCTCCCYCBCYMYYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:28203498-28203598 3.7e-09 72_[+3]_7 chr10:69573981-69574081 6.6e-09 5_[-3]_74 chr16:72093008-72093108 2e-08 47_[+3]_32 chr9:28075587-28075687 3.4e-08 2_[-3]_77 chr8:31031675-31031775 4.1e-08 3_[-3]_76 chr16:78237561-78237661 4.8e-08 20_[+3]_59 chr2:77345813-77345913 4.8e-08 1_[+3]_78 chr2:33543957-33544057 1.1e-07 76_[-3]_3 chr2:10519543-10519643 1.7e-07 51_[+3]_28 chr14:67123874-67123974 2.4e-07 6_[-3]_73 chr4:81005654-81005754 2.4e-07 73_[+3]_6 chr12:107972788-10797288 3.7e-07 60_[-3]_19 chr8:122749384-122749484 3.7e-07 3_[-3]_76 chr17:70486807-70486907 4.3e-07 71_[+3]_8 chr2:92881466-92881566 6.5e-07 26_[-3]_53 chr2:122558266-122558366 6.5e-07 78_[-3]_1 chr16:6448195-6448295 7.5e-07 22_[+3]_57 chr2:171586428-171586528 7.5e-07 22_[+3]_57 chr12:54567114-54567214 9.8e-07 57_[+3]_22 chr4:125696179-125696279 9.8e-07 32_[+3]_47 chr9:26700121-26700221 1.1e-06 4_[+3]_75 chr17:4908066-4908166 1.3e-06 63_[+3]_16 chr12:99510564-99510664 1.3e-06 15_[-3]_64 chr4:50008561-50008661 1.3e-06 77_[-3]_2 chr15:12918244-12918344 1.5e-06 13_[+3]_66 chr14:69994654-69994754 1.7e-06 51_[-3]_28 chr13:110627514-11062761 1.9e-06 61_[-3]_18 chr1:15605485-15605585 1.9e-06 4_[+3]_75 chr3:123508246-123508346 1.9e-06 64_[-3]_15 chr18:39255440-39255540 2.1e-06 13_[+3]_66 chr10:60952519-60952619 3.1e-06 55_[+3]_24 chr5:27074951-27075051 3.5e-06 6_[-3]_73 chr11:98294611-98294711 3.5e-06 53_[-3]_26 chr5:4851570-4851670 4e-06 41_[-3]_38 chr12:107927927-10792802 4e-06 58_[+3]_21 chr4:88938072-88938172 4.5e-06 61_[+3]_18 chr13:53850119-53850219 4.5e-06 73_[-3]_6 chr3:88200809-88200909 4.5e-06 78_[+3]_1 chr13:10086459-10086559 5e-06 41_[-3]_38 chr13:46217999-46218099 5e-06 55_[+3]_24 chr2:171121796-171121896 5.7e-06 29_[-3]_50 chr3:16760128-16760228 7.1e-06 47_[+3]_32 chr10:69636175-69636275 7.1e-06 79_[+3] chr17:70468032-70468132 8e-06 27_[+3]_52 chr7:74271553-74271653 8e-06 3_[-3]_76 chr2:9593783-9593883 9e-06 35_[-3]_44 chr10:70380006-70380106 9e-06 57_[-3]_22 chr15:12919882-12919982 1e-05 5_[-3]_74 chr10:11449955-11450055 1.1e-05 63_[+3]_16 chr2:159475970-159476070 1.1e-05 73_[+3]_6 chr17:48776296-48776396 1.2e-05 7_[+3]_72 chr13:42102878-42102978 1.2e-05 55_[-3]_24 chr11:81722189-81722289 1.4e-05 19_[+3]_60 chr11:85541399-85541499 1.4e-05 38_[-3]_41 chr10:25677875-25677975 1.4e-05 33_[+3]_46 chr6:84775842-84775942 1.4e-05 57_[-3]_22 chr1:187651301-187651401 1.5e-05 38_[-3]_41 chr2:132221524-132221624 1.7e-05 43_[-3]_36 chr12:26877578-26877678 1.9e-05 49_[-3]_30 chr3:135132194-135132294 1.9e-05 23_[+3]_56 chr5:54191565-54191665 2.1e-05 3_[+3]_76 chr1:42243611-42243711 2.1e-05 3_[+3]_76 chr6:121424792-121424892 2.1e-05 77_[-3]_2 chr13:57619282-57619382 2.3e-05 53_[+3]_26 chr1:98011043-98011143 2.3e-05 27_[+3]_52 chr14:70259337-70259437 2.6e-05 2_[+3]_77 chr14:123008424-12300852 2.6e-05 24_[-3]_55 chr18:75342706-75342806 2.6e-05 38_[-3]_41 chr14:49487980-49488080 2.6e-05 23_[-3]_56 chr9:42894435-42894535 2.6e-05 3_[+3]_76 chr19:26369175-26369275 2.6e-05 57_[-3]_22 chr7:73606741-73606841 2.9e-05 79_[-3] chr3:40371220-40371320 3.2e-05 70_[-3]_9 chr12:52604642-52604742 3.5e-05 66_[-3]_13 chr2:51768578-51768678 3.5e-05 18_[-3]_61 chr3:51590239-51590339 3.5e-05 [-3]_79 chr13:85513640-85513740 4.3e-05 1_[+3]_78 chr6:80856744-80856844 4.7e-05 66_[-3]_13 chr2:76070306-76070406 4.7e-05 41_[-3]_38 chr16:28511313-28511413 4.7e-05 11_[-3]_68 chr11:61619703-61619803 5.2e-05 41_[+3]_38 chr3:85923933-85924033 5.7e-05 1_[+3]_78 chr14:46133561-46133661 5.7e-05 72_[-3]_7 chr4:53512582-53512682 6.2e-05 11_[+3]_68 chr3:83344347-83344447 6.8e-05 34_[-3]_45 chr9:88522735-88522835 6.8e-05 69_[-3]_10 chr14:108702335-10870243 7.5e-05 9_[-3]_70 chr16:13447895-13447995 7.5e-05 58_[-3]_21 chr8:29110710-29110810 9e-05 3_[-3]_76 chr11:94160241-94160341 9e-05 13_[+3]_66 chr5:99441777-99441877 9e-05 69_[-3]_10 chr13:107888521-10788862 9.8e-05 4_[+3]_75 chr4:8647004-8647104 0.00012 12_[-3]_67 chr9:46443397-46443497 0.00012 68_[-3]_11 chr3:154816640-154816740 0.00012 78_[-3]_1 chr15:27959633-27959733 0.00014 55_[-3]_24 chr14:8608514-8608614 0.00015 41_[-3]_38 chr17:73135297-73135397 0.00016 13_[-3]_66 chr5:27402390-27402490 0.00018 30_[+3]_49 chr14:25800141-25800241 0.00019 26_[+3]_53 chr13:99579506-99579606 0.00023 44_[-3]_35 chr6:145340580-145340680 0.00027 66_[+3]_13 chr7:64574199-64574299 0.00036 33_[-3]_46 chr10:82178184-82178284 0.00045 74_[+3]_5 chr1:7397664-7397764 0.001 49_[+3]_30 chr4:12212261-12212361 0.0014 22_[-3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKSCYTCTCCCYCBCYMYYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCKSCYTCTCCCYCBCYMYYC width=21 seqs=106 chr6:28203498-28203598 ( 73) CCCCCCTCTCTCCCCCTCCTC 1 chr10:69573981-69574081 ( 6) CCGCCTTCTCCCTCTCTTCTC 1 chr16:72093008-72093108 ( 48) GTTCCCCCCCCCCCTCCACCC 1 chr9:28075587-28075687 ( 3) TCGGCCTCTCCCTTCCCACTC 1 chr8:31031675-31031775 ( 4) GCCTCCTCACCCCCCCGCCCC 1 chr16:78237561-78237661 ( 21) CTTCCCCCCCCCCCCGCCCCG 1 chr2:77345813-77345913 ( 2) CCTTTCTCTCACCCCCCCCCC 1 chr2:33543957-33544057 ( 77) CCGCGCCCCCCCCCCGTACCC 1 chr2:10519543-10519643 ( 52) CCTTCCCCTCTCCTCCCATCC 1 chr14:67123874-67123974 ( 7) GCTGCTCCTCCCACTCTCCCT 1 chr4:81005654-81005754 ( 74) CCTTCCTCTCACACTCTACCC 1 chr12:107972788-10797288 ( 61) CTGGCTTCTCCACCTCACCCT 1 chr8:122749384-122749484 ( 4) CCTTCCTCCCACTCTGCCTCC 1 chr17:70486807-70486907 ( 72) CAGGCCCCTCCCTCTCTATCA 1 chr2:92881466-92881566 ( 27) CAGGTGCCTCCCCCTCCTTCC 1 chr2:122558266-122558366 ( 79) CCTCCCTCCCTCTCCTCCCTT 1 chr16:6448195-6448295 ( 23) CCTCCACCACTCCCGCCCCCT 1 chr2:171586428-171586528 ( 23) CCCTCCTCCCTCCCTCCCTTT 1 chr12:54567114-54567214 ( 58) CTGCTTTTTCCCCTCCCACCC 1 chr4:125696179-125696279 ( 33) GCCCCGCCTCCCTCCCTCCTT 1 chr9:26700121-26700221 ( 5) CTGCCTTCACCCCCTCAACAC 1 chr17:4908066-4908166 ( 64) CCGCCGCCACCCCTGGCCGCC 1 chr12:99510564-99510664 ( 16) CCTCCCTCTGCCCCTGTCTTG 1 chr4:50008561-50008661 ( 78) CAGCCTTCTCTCCTCCACCCT 1 chr15:12918244-12918344 ( 14) CCGTCCTCTCCCATCGGATCT 1 chr14:69994654-69994754 ( 52) GAGTTCCCTCCCCCTGTACCC 1 chr13:110627514-11062761 ( 62) CCTCCTTCACACGCTTCCTCC 1 chr1:15605485-15605585 ( 5) CTTGCCTCACCCTGTGCTCTC 1 chr3:123508246-123508346 ( 65) TCGGCTTTTCCCCGCCCACCT 1 chr18:39255440-39255540 ( 14) TCGCTCTCTCACCCCTCCCGC 1 chr10:60952519-60952619 ( 56) GAGGTCCCTCCCACCGCTTCC 1 chr5:27074951-27075051 ( 7) CCTGCTCTTCCCACGCCAGCC 1 chr11:98294611-98294711 ( 54) GCCGCTTCCCTCCCCCTTCCT 1 chr5:4851570-4851670 ( 42) TTTCCCCCTCCCATCCTCTGC 1 chr12:107927927-10792802 ( 59) CCTCTCCCCCCCACTTCCGCC 1 chr4:88938072-88938172 ( 62) CCGCCTCGTCCCTCGGCTCCC 1 chr13:53850119-53850219 ( 74) GCGGCTTCTCCTTCCCTTCCA 1 chr3:88200809-88200909 ( 79) CCGGCCTTCCCTGCGCCCCGC 1 chr13:10086459-10086559 ( 42) CAGACTTCACCCGCGCCATGC 1 chr13:46217999-46218099 ( 56) GATGCTTCCCCCTGTCTTCCC 1 chr2:171121796-171121896 ( 30) CCTATCTCCCCACCCCCAGCC 1 chr3:16760128-16760228 ( 48) CTTATCTCTCTCTCTCTCTTC 1 chr10:69636175-69636275 ( 80) TCCCCCTCACCTCATCCACCC 1 chr17:70468032-70468132 ( 28) CCCTCCTCACCACCTTCACCA 1 chr7:74271553-74271653 ( 4) CCTACTTCTCCCCAACTCCTC 1 chr2:9593783-9593883 ( 36) CTGCCTTCACCAGCCGCCTTG 1 chr10:70380006-70380106 ( 58) CTTCTCTCTCCCACTGGTTGC 1 chr15:12919882-12919982 ( 6) CTGCTCTCTCTCCTACCACCT 1 chr10:11449955-11450055 ( 64) GCTACGTCTCCACCCCTCTCA 1 chr2:159475970-159476070 ( 74) TCTCTTTCTCCCCTCTCATCT 1 chr17:48776296-48776396 ( 8) TTGGCCCCTCCCTGTCTGCTC 1 chr13:42102878-42102978 ( 56) CCTCCCCCACTACCTCTCCAT 1 chr11:81722189-81722289 ( 20) CCCTATTCTCCAACCCCACCC 1 chr11:85541399-85541499 ( 39) TTGTCCTCACACACCCGCCTC 1 chr10:25677875-25677975 ( 34) CACTCCTCCCCCCAGCCTCCT 1 chr6:84775842-84775942 ( 58) CCTGCCCTTCCCTCTGACTCA 1 chr1:187651301-187651401 ( 39) GCTGCTTCTGCCTCCGTCGTC 1 chr2:132221524-132221624 ( 44) TTCCCTTTTCCCCCTCCCTGG 1 chr12:26877578-26877678 ( 50) CTGGCACCACCCTGCTTCCTC 1 chr3:135132194-135132294 ( 24) CCTACCTCTCCCTTTTTAGTC 1 chr5:54191565-54191665 ( 4) CCCGCATCTCCATTTCCTCTT 1 chr1:42243611-42243711 ( 4) CACGCGTCTCCCTCCTTTCAC 1 chr6:121424792-121424892 ( 78) CCCGCTTCAGCTGCGCCCCTC 1 chr13:57619282-57619382 ( 54) TCTGCTCCTCTTCCCCCATTT 1 chr1:98011043-98011143 ( 28) GTTCTCTTTCCAACCCCATCC 1 chr14:70259337-70259437 ( 3) GCTGCTCCTCCCAAAGCCTCC 1 chr14:123008424-12300852 ( 25) CCTCCATTTCCCATCCCATTT 1 chr18:75342706-75342806 ( 39) GAGCCGTCTGCCCGGCGCCGC 1 chr14:49487980-49488080 ( 24) TATGCCTCTCCGTCACTATCC 1 chr9:42894435-42894535 ( 4) CAGGCCTCACTCGGTGCCTCA 1 chr19:26369175-26369275 ( 58) CCTACCTCTGTCCCTTTTTCC 1 chr7:73606741-73606841 ( 80) CCGCCGCCGCCCTCCCCCATC 1 chr3:40371220-40371320 ( 71) TCTCTCTCCCACCTTCGCTTC 1 chr12:52604642-52604742 ( 67) GAGGCTTCACCGCCCGCAGTC 1 chr2:51768578-51768678 ( 19) CAGTCCCCTCCATCTGGCGCG 1 chr3:51590239-51590339 ( 1) TCTCCTTCCCCTGCCCGCTAC 1 chr13:85513640-85513740 ( 2) CTCCTTTCTCCTGTGCTCCTC 1 chr6:80856744-80856844 ( 67) GTGCTTTCTCCTTCGTCCCTT 1 chr2:76070306-76070406 ( 42) CTGCCTCCTCCACGTGACTTG 1 chr16:28511313-28511413 ( 12) TTGACTCCCGCCCTGCCCTCC 1 chr11:61619703-61619803 ( 42) CTGCCCTCGCGACCGCGCCCT 1 chr3:85923933-85924033 ( 2) CCCGCCTCTCCAGGGTTCCTA 1 chr14:46133561-46133661 ( 73) CCGTCTTCTCTTTATCACTCC 1 chr4:53512582-53512682 ( 12) CAGCCATCTCAACCTCGTCAC 1 chr3:83344347-83344447 ( 35) TGGGCCCCTCCCCGGGCATGC 1 chr9:88522735-88522835 ( 70) GCGCGCGCTCCCACGCGTTGC 1 chr14:108702335-10870243 ( 10) CTGCCCTCTCGTTCCTCATCA 1 chr16:13447895-13447995 ( 59) CAGGGATCCCCCCGGGGCCGC 1 chr8:29110710-29110810 ( 4) TATGTATCTCTCTCTCTCTCT 1 chr11:94160241-94160341 ( 14) GCCCCGTCTCTCCTGCTGTGC 1 chr5:99441777-99441877 ( 70) TAGCCGTTTCTCTTGCGCTCC 1 chr13:107888521-10788862 ( 5) GCGGCGCCCCTCAGCGGCCCG 1 chr4:8647004-8647104 ( 13) CCGGCTTCCGCAGCCGGCCGG 1 chr9:46443397-46443497 ( 69) CTCGGCGCTCCCTTCTCCCCG 1 chr3:154816640-154816740 ( 79) CACCCTGCACCAACCGACTCC 1 chr15:27959633-27959733 ( 56) CCGTCCCCACCGTGTGCACAT 1 chr14:8608514-8608614 ( 42) CTGTCACCTCACACGGTACCA 1 chr17:73135297-73135397 ( 14) CCGCGTTTTCCCGCTGAACTG 1 chr5:27402390-27402490 ( 31) CTGTGCTTACTCCCGCTCCAC 1 chr14:25800141-25800241 ( 27) GCTGGTCCTCCCCTACTGTCC 1 chr13:99579506-99579606 ( 45) GAGCCGTCACCATGGGGACCG 1 chr6:145340580-145340680 ( 67) GTCACCGCCCCGCCGGCTTCC 1 chr7:64574199-64574299 ( 34) CAGACCTCTGCGAGTCATCCC 1 chr10:82178184-82178284 ( 75) GCGGGACCGCCGTCCCCACGC 1 chr1:7397664-7397764 ( 50) CCGCCCGCTCGGTCGTGATTG 1 chr4:12212261-12212361 ( 23) CCGCAGTCTCAAGTTCCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKSCYTCTCCCYCBCYMYYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.37065 E= 1.7e-015 -1337 146 -6 -77 -46 127 -458 -15 -1337 -34 108 31 -153 90 50 -77 -385 172 -159 -77 -169 108 -100 23 -1337 41 -227 125 -1337 197 -458 -140 -53 -34 -300 114 -1337 203 -159 -1337 -153 162 -300 -61 -69 156 -178 -153 -69 90 -100 10 -253 146 -68 -53 -253 70 0 39 -1337 137 27 -95 -169 103 -50 10 19 111 -259 -77 -485 124 -159 47 -205 122 -78 0 -169 141 -100 -46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKSCYTCTCCCYCBCYMYYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 106 E= 1.7e-015 0.000000 0.622642 0.216981 0.160377 0.198113 0.547170 0.009434 0.245283 0.000000 0.179245 0.481132 0.339623 0.094340 0.424528 0.320755 0.160377 0.018868 0.745283 0.075472 0.160377 0.084906 0.481132 0.113208 0.320755 0.000000 0.301887 0.047170 0.650943 0.000000 0.886792 0.009434 0.103774 0.188679 0.179245 0.028302 0.603774 0.000000 0.924528 0.075472 0.000000 0.094340 0.698113 0.028302 0.179245 0.169811 0.669811 0.066038 0.094340 0.169811 0.424528 0.113208 0.292453 0.047170 0.622642 0.141509 0.188679 0.047170 0.367925 0.226415 0.358491 0.000000 0.584906 0.273585 0.141509 0.084906 0.462264 0.160377 0.292453 0.311321 0.490566 0.037736 0.160377 0.009434 0.537736 0.075472 0.377358 0.066038 0.528302 0.132075 0.273585 0.084906 0.603774 0.113208 0.198113 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCKSCYTCTCCCYCBCYMYYC MEME-3 regular expression -------------------------------------------------------------------------------- [CG][CT][GT][CG]C[CT][TC]CTCCC[CT]C[CTG][CG][CT][CA][CT][CT]C -------------------------------------------------------------------------------- Time 934.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTSCTYYCTCYCTGCHYHYCCTBYCCTB MEME-4 width = 29 sites = 21 llr = 331 E-value = 3.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTSCTYYCTCYCTGCHYHYCCTBYCCTB MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::1:21::121:24:4:1:2::11:: pos.-specific C 82:581447173622725236a:457524 probability G ::23::1:1:1:::61:2:2:::4:12:2 matrix T :8812853:925172:43452:8241183 bits 2.1 1.9 * 1.7 * 1.5 * Relative 1.3 * * * * * Entropy 1.1 *** ** ** * * (22.8 bits) 0.9 *** ** *** * ** * * 0.6 ******* *** **** * *** ** * 0.4 ******* ******** *********** 0.2 ***************************** 0.0 ----------------------------- Multilevel CTTCCTTCCTCTCTGCACATCCTCCCCTC consensus GGT CT CA C TTTCT GT G T sequence C T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTSCTYYCTCYCTGCHYHYCCTBYCCTB MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr9:111608632-111608732 + 24 1.34e-11 GATAGCATCT CTTCCTTCCTCTATGCATTTCCTTCCGCT GACTTCAGTT chr1:130575999-130576099 + 55 6.89e-11 ctctctctct cttcttctctctctcctctctctctcttc ttctctctct chr2:90545265-90545365 - 23 9.12e-11 AACAGCTCCT CTTGCTTCCTCCTTGCCTTTTCTTTCCTT TCCATTCTGA chr8:33973923-33974023 + 70 7.21e-10 GAGTCATCAC CCTGCTTTCTCTCATCTCAGCCTGCCCCG CA chr16:78237561-78237661 + 48 1.83e-09 cccgccctct ccttcttcccctcccctccccctcTCGTT AATTAGAGGT chr8:122749384-122749484 + 53 1.83e-09 TGCCAACTCT CTGCCTGCCTCCCTGATCCTCCAGCACTG TGGAGCCCAG chr14:93053793-93053893 - 70 2.85e-09 TG CTTCCATAGTCCCCGCTCTTCCTTTGCTC TATAGCATTT chr11:9629955-9630055 + 48 5.41e-09 cctttcaagg ctggcttccttcctgatttccctcacgtt ttctcctgct chr12:12420802-12420902 - 68 6.65e-09 GCGG CTTCCTTTGTCCCTGCCCTGCCGCCGCCT TGGCGTCTGC chr15:59596540-59596640 - 31 1.21e-08 GCGTTTGACA CTGGCTCTGTGACTGCAGCGCCTCTCGTC TTGGGTGTGG chr8:126920827-126920927 + 27 1.96e-08 AAGACAAGAG CCTCTTTTCTCAATTCTCACACTGCCATC AAGTGGCCCA chr12:30435182-30435282 - 55 2.83e-08 CCGTCTTCAT CTTCCCTCCTGTTTGCCCATTGTGCCCTG CCTTCACTGA chr3:119057922-119058022 + 69 3.70e-08 CTATTGACTC ATTCCTCACTTTCTCCACATTCATTTCTC TGA chr11:61619703-61619803 - 71 7.38e-08 T CCTCCCCCATCTCAGCGCCCCCACCCCCC AGCATCACAG chr12:98023499-98023599 + 50 9.45e-08 ATTCATGATT ATTGCTTCATCCTTTGATACCCTGCCATT GGTAGCTGGG chr17:32101500-32101600 - 47 1.30e-07 TCAGCTCCTG CTTCCTGACCTGCTTAAGTTCCTGTCCTG ACTTCCTTTG chr5:132817303-132817403 + 20 1.30e-07 CCTCATTTGT ATGTTTCCCTCCATCCCCTCCCTCTGTTT TCTCCCTCAT chr16:74212198-74212298 - 55 1.92e-07 ATGGGGAATT TTTGCACGCTCTCTGAATATACTTCCCTG CAGAGCATAA chr8:27761928-27762028 + 50 3.21e-07 actccaaggc ctgcctctatctaccgagattcacctctc aaaggcttta chr16:82712507-82712607 - 46 9.44e-07 ACTAAGAGAC CTTGTTTACCCACAGGTTATACTGCCTTA TAGATGACTT chr2:94241694-94241794 - 21 1.14e-06 CTCTGGGGGA GTTTTTCTCTTTACGCAGCGCCTGTAGTC ACGGCTGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTSCTYYCTCYCTGCHYHYCCTBYCCTB MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:111608632-111608732 1.3e-11 23_[+4]_48 chr1:130575999-130576099 6.9e-11 54_[+4]_17 chr2:90545265-90545365 9.1e-11 22_[-4]_49 chr8:33973923-33974023 7.2e-10 69_[+4]_2 chr16:78237561-78237661 1.8e-09 47_[+4]_24 chr8:122749384-122749484 1.8e-09 52_[+4]_19 chr14:93053793-93053893 2.9e-09 69_[-4]_2 chr11:9629955-9630055 5.4e-09 47_[+4]_24 chr12:12420802-12420902 6.6e-09 67_[-4]_4 chr15:59596540-59596640 1.2e-08 30_[-4]_41 chr8:126920827-126920927 2e-08 26_[+4]_45 chr12:30435182-30435282 2.8e-08 54_[-4]_17 chr3:119057922-119058022 3.7e-08 68_[+4]_3 chr11:61619703-61619803 7.4e-08 70_[-4]_1 chr12:98023499-98023599 9.4e-08 49_[+4]_22 chr17:32101500-32101600 1.3e-07 46_[-4]_25 chr5:132817303-132817403 1.3e-07 19_[+4]_52 chr16:74212198-74212298 1.9e-07 54_[-4]_17 chr8:27761928-27762028 3.2e-07 49_[+4]_22 chr16:82712507-82712607 9.4e-07 45_[-4]_26 chr2:94241694-94241794 1.1e-06 20_[-4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTSCTYYCTCYCTGCHYHYCCTBYCCTB MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTSCTYYCTCYCTGCHYHYCCTBYCCTB width=29 seqs=21 chr9:111608632-111608732 ( 24) CTTCCTTCCTCTATGCATTTCCTTCCGCT 1 chr1:130575999-130576099 ( 55) CTTCTTCTCTCTCTCCTCTCTCTCTCTTC 1 chr2:90545265-90545365 ( 23) CTTGCTTCCTCCTTGCCTTTTCTTTCCTT 1 chr8:33973923-33974023 ( 70) CCTGCTTTCTCTCATCTCAGCCTGCCCCG 1 chr16:78237561-78237661 ( 48) CCTTCTTCCCCTCCCCTCCCCCTCTCGTT 1 chr8:122749384-122749484 ( 53) CTGCCTGCCTCCCTGATCCTCCAGCACTG 1 chr14:93053793-93053893 ( 70) CTTCCATAGTCCCCGCTCTTCCTTTGCTC 1 chr11:9629955-9630055 ( 48) CTGGCTTCCTTCCTGATTTCCCTCACGTT 1 chr12:12420802-12420902 ( 68) CTTCCTTTGTCCCTGCCCTGCCGCCGCCT 1 chr15:59596540-59596640 ( 31) CTGGCTCTGTGACTGCAGCGCCTCTCGTC 1 chr8:126920827-126920927 ( 27) CCTCTTTTCTCAATTCTCACACTGCCATC 1 chr12:30435182-30435282 ( 55) CTTCCCTCCTGTTTGCCCATTGTGCCCTG 1 chr3:119057922-119058022 ( 69) ATTCCTCACTTTCTCCACATTCATTTCTC 1 chr11:61619703-61619803 ( 71) CCTCCCCCATCTCAGCGCCCCCACCCCCC 1 chr12:98023499-98023599 ( 50) ATTGCTTCATCCTTTGATACCCTGCCATT 1 chr17:32101500-32101600 ( 47) CTTCCTGACCTGCTTAAGTTCCTGTCCTG 1 chr5:132817303-132817403 ( 20) ATGTTTCCCTCCATCCCCTCCCTCTGTTT 1 chr16:74212198-74212298 ( 55) TTTGCACGCTCTCTGAATATACTTCCCTG 1 chr8:27761928-27762028 ( 50) CTGCCTCTATCTACCGAGATTCACCTCTC 1 chr16:82712507-82712607 ( 46) CTTGTTTACCCACAGGTTATACTGCCTTA 1 chr2:94241694-94241794 ( 21) GTTTTTCTCTTTACGCAGCGCCTGTAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTSCTYYCTCYCTGCHYHYCCTBYCCTB MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 9.60508 E= 3.2e-002 -93 175 -225 -252 -1104 -25 -1104 157 -1104 -1104 7 148 -1104 121 55 -93 -1104 175 -1104 -20 -152 -125 -1104 157 -1104 75 -125 94 -52 92 -225 29 -93 165 -67 -1104 -1104 -67 -1104 165 -1104 165 -125 -52 -93 55 -225 80 -20 145 -1104 -93 -93 -25 -1104 129 -1104 7 133 -52 -52 155 -67 -1104 48 -25 -225 48 -1104 121 -25 7 48 7 -1104 48 -1104 55 -25 80 -93 145 -1104 -20 -1104 207 -225 -1104 -52 -1104 -225 148 -1104 75 75 -20 -252 121 -1104 65 -152 155 -67 -152 -152 121 7 -93 -1104 -25 -1104 157 -252 75 7 29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTSCTYYCTCYCTGCHYHYCCTBYCCTB MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 21 E= 3.2e-002 0.142857 0.761905 0.047619 0.047619 0.000000 0.190476 0.000000 0.809524 0.000000 0.000000 0.238095 0.761905 0.000000 0.523810 0.333333 0.142857 0.000000 0.761905 0.000000 0.238095 0.095238 0.095238 0.000000 0.809524 0.000000 0.380952 0.095238 0.523810 0.190476 0.428571 0.047619 0.333333 0.142857 0.714286 0.142857 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.714286 0.095238 0.190476 0.142857 0.333333 0.047619 0.476190 0.238095 0.619048 0.000000 0.142857 0.142857 0.190476 0.000000 0.666667 0.000000 0.238095 0.571429 0.190476 0.190476 0.666667 0.142857 0.000000 0.380952 0.190476 0.047619 0.380952 0.000000 0.523810 0.190476 0.285714 0.380952 0.238095 0.000000 0.380952 0.000000 0.333333 0.190476 0.476190 0.142857 0.619048 0.000000 0.238095 0.000000 0.952381 0.047619 0.000000 0.190476 0.000000 0.047619 0.761905 0.000000 0.380952 0.380952 0.238095 0.047619 0.523810 0.000000 0.428571 0.095238 0.666667 0.142857 0.095238 0.095238 0.523810 0.238095 0.142857 0.000000 0.190476 0.000000 0.809524 0.047619 0.380952 0.238095 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTSCTYYCTCYCTGCHYHYCCTBYCCTB MEME-4 regular expression -------------------------------------------------------------------------------- CT[TG][CG][CT]T[TC][CT]CTC[TC][CA]T[GC]C[AT][CT][ATC][TC][CT]CT[CGT][CT]C[CG]T[CTG] -------------------------------------------------------------------------------- Time 1216.22 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGTCAC MEME-5 width = 8 sites = 37 llr = 372 E-value = 3.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGTCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C ::::2a:8 probability G :a:a:::: matrix T a:::8::2 bits 2.1 * * * 1.9 **** ** 1.7 **** ** 1.5 **** ** Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAGTCAC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr10:119318314-11931841 + 45 1.47e-05 GATGAAGGGC TGAGTCAC TCCCGATGCC chr17:70468032-70468132 - 12 1.47e-05 GGGCCCAGGT TGAGTCAC GCTATACTTG chr5:27402390-27402490 - 59 1.47e-05 AGAGCAGAAG TGAGTCAC TGGTGAGGTG chr13:106789003-10678910 - 22 1.47e-05 CGAAAGGTAT TGAGTCAC GGAAGGAATG chr4:153634672-153634772 + 61 1.47e-05 GGTTACAATC TGAGTCAC TAAACACATG chr14:85935005-85935105 + 85 1.47e-05 GAGGAACAGA TGAGTCAC AGGAAAAT chr8:84458755-84458855 - 52 1.47e-05 GGCTGGCCTC TGAGTCAC ACTGCAGCTC chr7:74271553-74271653 + 61 1.47e-05 actccaggtc tgagtcac aggtctgacc chr13:53969322-53969422 + 75 1.47e-05 ATGTGGTTGC TGAGTCAC CGCTTATTGT chr1:173027449-173027549 + 25 1.47e-05 CCTGTGAGAC TGAGTCAC GCACTTGGAG chr1:73599422-73599522 - 8 1.47e-05 ATAATTATGG TGAGTCAC CTAATCA chr2:132221524-132221624 - 21 1.47e-05 AGATTCTTTT TGAGTCAC CCTTGTAAGT chr12:97483480-97483580 + 35 1.47e-05 AGTTGTCTGA TGAGTCAC TCCTTGGATA chr3:133169746-133169846 - 16 1.47e-05 TAAGAGCTTA TGAGTCAC AGCCGCGGTG chr18:28308145-28308245 - 16 1.47e-05 CTTTGCTTTT TGAGTCAC TCTCCATGCT chr8:113253994-113254094 + 59 1.47e-05 GACAGCCCTA TGAGTCAC CGTCTGACCG chr2:20209254-20209354 + 68 1.47e-05 gaatgagaaa tgagtcac atactcaggt chr4:68022777-68022877 + 2 1.47e-05 T TGAGTCAC ACAAAAACAA chr2:171586428-171586528 - 63 1.47e-05 TCACCTGGAA TGAGTCAC TCTGTGTTAA chr10:107932352-10793245 + 59 1.47e-05 AAGGAAAAGA TGAGTCAC CCGGTTCTAT chr2:143353363-143353463 - 85 2.70e-05 TTCCATTC TGAGCCAC TGAGATTTTC chr3:13561431-13561531 - 48 2.70e-05 CAGATGGTTA TGAGCCAC CATGTGGTTG chr16:57324498-57324598 - 10 2.70e-05 CAGATGGTAG TGAGCCAC TGAATGTGG chr8:28688030-28688130 - 63 2.70e-05 AAGAGCTCAG TGAGCCAC AGTGTGCAGG chr14:66754562-66754662 + 25 2.70e-05 GCTCTTTATC TGAGCCAC ATCTGGTGGG chr6:93616431-93616531 + 25 2.70e-05 GGTCTTCTGA TGAGCCAC CTCCTTCCTG chr2:68435731-68435831 - 39 2.70e-05 CTTCCTTTGA TGAGCCAC TTGAAGGCAG chr3:37956665-37956765 + 56 2.70e-05 GATCCTTCTG TGAGCCAC CTGCCACATG chr18:26015583-26015683 + 19 4.47e-05 AAACCTGACC TGAGTCAT CTCATGACGT chr12:16139182-16139282 + 49 4.47e-05 TTCTCACTGT TGAGTCAT GAAGGGAAAT chr3:116380282-116380382 - 46 4.47e-05 GGAGTAGGTG TGAGTCAT TCATTGGGCT chr2:49412660-49412760 - 62 4.47e-05 GCATACATAG TGAGTCAT TGTGCTTATT chr13:28718721-28718821 - 63 4.47e-05 GACGCTCTAA TGAGTCAT GGGGACGGTC chr18:26795558-26795658 - 68 4.47e-05 CCAGCTTTAA TGAGTCAT GTAAAATTCT chr9:16422694-16422794 - 5 4.47e-05 GTCAGAGGTG TGAGTCAT GGAG chr4:20238406-20238506 - 59 4.47e-05 CTCTGCCGCC TGAGTCAT AACACTCAAG chr6:121424792-121424892 - 47 4.47e-05 ACAGCACGGC TGAGTCAT CTCTGCCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:119318314-11931841 1.5e-05 44_[+5]_48 chr17:70468032-70468132 1.5e-05 11_[-5]_81 chr5:27402390-27402490 1.5e-05 58_[-5]_34 chr13:106789003-10678910 1.5e-05 21_[-5]_71 chr4:153634672-153634772 1.5e-05 60_[+5]_32 chr14:85935005-85935105 1.5e-05 84_[+5]_8 chr8:84458755-84458855 1.5e-05 51_[-5]_41 chr7:74271553-74271653 1.5e-05 60_[+5]_32 chr13:53969322-53969422 1.5e-05 74_[+5]_18 chr1:173027449-173027549 1.5e-05 24_[+5]_68 chr1:73599422-73599522 1.5e-05 7_[-5]_85 chr2:132221524-132221624 1.5e-05 20_[-5]_72 chr12:97483480-97483580 1.5e-05 34_[+5]_58 chr3:133169746-133169846 1.5e-05 15_[-5]_77 chr18:28308145-28308245 1.5e-05 15_[-5]_77 chr8:113253994-113254094 1.5e-05 58_[+5]_34 chr2:20209254-20209354 1.5e-05 67_[+5]_25 chr4:68022777-68022877 1.5e-05 1_[+5]_91 chr2:171586428-171586528 1.5e-05 62_[-5]_30 chr10:107932352-10793245 1.5e-05 58_[+5]_34 chr2:143353363-143353463 2.7e-05 84_[-5]_8 chr3:13561431-13561531 2.7e-05 47_[-5]_45 chr16:57324498-57324598 2.7e-05 9_[-5]_83 chr8:28688030-28688130 2.7e-05 62_[-5]_30 chr14:66754562-66754662 2.7e-05 24_[+5]_68 chr6:93616431-93616531 2.7e-05 24_[+5]_68 chr2:68435731-68435831 2.7e-05 38_[-5]_54 chr3:37956665-37956765 2.7e-05 55_[+5]_37 chr18:26015583-26015683 4.5e-05 18_[+5]_74 chr12:16139182-16139282 4.5e-05 48_[+5]_44 chr3:116380282-116380382 4.5e-05 45_[-5]_47 chr2:49412660-49412760 4.5e-05 61_[-5]_31 chr13:28718721-28718821 4.5e-05 62_[-5]_30 chr18:26795558-26795658 4.5e-05 67_[-5]_25 chr9:16422694-16422794 4.5e-05 4_[-5]_88 chr4:20238406-20238506 4.5e-05 58_[-5]_34 chr6:121424792-121424892 4.5e-05 46_[-5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGTCAC width=8 seqs=37 chr10:119318314-11931841 ( 45) TGAGTCAC 1 chr17:70468032-70468132 ( 12) TGAGTCAC 1 chr5:27402390-27402490 ( 59) TGAGTCAC 1 chr13:106789003-10678910 ( 22) TGAGTCAC 1 chr4:153634672-153634772 ( 61) TGAGTCAC 1 chr14:85935005-85935105 ( 85) TGAGTCAC 1 chr8:84458755-84458855 ( 52) TGAGTCAC 1 chr7:74271553-74271653 ( 61) TGAGTCAC 1 chr13:53969322-53969422 ( 75) TGAGTCAC 1 chr1:173027449-173027549 ( 25) TGAGTCAC 1 chr1:73599422-73599522 ( 8) TGAGTCAC 1 chr2:132221524-132221624 ( 21) TGAGTCAC 1 chr12:97483480-97483580 ( 35) TGAGTCAC 1 chr3:133169746-133169846 ( 16) TGAGTCAC 1 chr18:28308145-28308245 ( 16) TGAGTCAC 1 chr8:113253994-113254094 ( 59) TGAGTCAC 1 chr2:20209254-20209354 ( 68) TGAGTCAC 1 chr4:68022777-68022877 ( 2) TGAGTCAC 1 chr2:171586428-171586528 ( 63) TGAGTCAC 1 chr10:107932352-10793245 ( 59) TGAGTCAC 1 chr2:143353363-143353463 ( 85) TGAGCCAC 1 chr3:13561431-13561531 ( 48) TGAGCCAC 1 chr16:57324498-57324598 ( 10) TGAGCCAC 1 chr8:28688030-28688130 ( 63) TGAGCCAC 1 chr14:66754562-66754662 ( 25) TGAGCCAC 1 chr6:93616431-93616531 ( 25) TGAGCCAC 1 chr2:68435731-68435831 ( 39) TGAGCCAC 1 chr3:37956665-37956765 ( 56) TGAGCCAC 1 chr18:26015583-26015683 ( 19) TGAGTCAT 1 chr12:16139182-16139282 ( 49) TGAGTCAT 1 chr3:116380282-116380382 ( 46) TGAGTCAT 1 chr2:49412660-49412760 ( 62) TGAGTCAT 1 chr13:28718721-28718821 ( 63) TGAGTCAT 1 chr18:26795558-26795658 ( 68) TGAGTCAT 1 chr9:16422694-16422794 ( 5) TGAGTCAT 1 chr4:20238406-20238506 ( 59) TGAGTCAT 1 chr6:121424792-121424892 ( 47) TGAGTCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.7227 E= 3.4e-001 -1185 -1185 -1185 187 -1185 -1185 214 -1185 187 -1185 -1185 -1185 -1185 -1185 214 -1185 -1185 -7 -1185 152 -1185 214 -1185 -1185 187 -1185 -1185 -1185 -1185 174 -1185 -17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 3.4e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.216216 0.000000 0.783784 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.756757 0.000000 0.243243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTCAC MEME-5 regular expression -------------------------------------------------------------------------------- TGAG[TC]CA[CT] -------------------------------------------------------------------------------- Time 1493.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CCASCAGRKGGCASDRKNGM MEME-6 width = 20 sites = 26 llr = 331 E-value = 1.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCASCAGRKGGCASDRKNGM MEME-6 Description -------------------------------------------------------------------------------- Simplified A 1:5::9:4::::7:24:313 pos.-specific C 98237:2:1::9:32:1225 probability G :1161:7659a:36355271 matrix T :12:21::41:1:13133:2 bits 2.1 * 1.9 * 1.7 * 1.5 * *** Relative 1.3 ** * *** Entropy 1.1 ** * *** *** (18.3 bits) 0.9 ** ***** **** * 0.6 ** ***** ***** ** * 0.4 ** *********** ** * 0.2 ************** ** ** 0.0 -------------------- Multilevel CCAGCAGGGGGCAGTGGTGC consensus C CAT GCGATA A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCAGRKGGCASDRKNGM MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr18:62023075-62023175 + 41 9.92e-11 ATCAAGACAT CCAGCAGGGGGCAGTGGTGT CTTTTCTAAC chr15:68205066-68205166 - 19 1.61e-10 AGCCATATTG CCAGCAGGTGGCAGAGTTGC CCTGTTCCCT chr13:53109417-53109517 + 33 7.44e-09 CCTTTGGACT CCAGCAGATGGCAGCATCGA GCTCCTGCTG chr10:5865919-5866019 + 37 9.85e-09 attcctgatg cctgcagagggcagaagaga gcattaaagc chr13:99837725-99837825 - 55 3.59e-08 CTCAGTTCAA CCAGGAGATGGCGCTAGGGC TTGGTACTTA chr5:27074951-27075051 + 50 1.26e-07 GTGAGTCTTG CCAGCAGAGGGCAGAGTTTA CTGCTGAGAC chr14:31385938-31386038 + 6 1.26e-07 CACAC CCACTAGGGGGCAGGAGGCT CAAGGCCGCC chr3:59059172-59059272 - 53 1.92e-07 TGTAAAATGA CCACAAGAGGGCACTAGTGA AACATTCATC chr16:74134953-74135053 - 11 2.35e-07 GTAATGGGCA CCTGCAGGAGGCAGTTTAGC AAGCTGGGAG chr14:64858514-64858614 - 38 3.17e-07 GGGCTGTACT CCAGCTTGGGGCAGGGTGGA AGCTGTCGAC chr11:61619703-61619803 - 8 3.49e-07 CCAGGAGCGG CCAGCTGGGGGCGCTTCTGC CTTGCGG chr1:130350230-130350330 - 44 3.49e-07 CAGCTATTGA CCACTAGGTGGCATTGTAGT GTAAGCAGAG chr16:9009345-9009445 + 75 3.84e-07 TTGCGCATCG CCACTAGGTGGTAGCATCGC GACATG chr3:130425375-130425475 + 5 5.11e-07 TGTC CCTGCAGGTGGCACTTCACC TACTGGAAAA chr1:164898693-164898793 + 13 7.35e-07 TATACTCAAA ACCCTAGAGGGCAGCAGCGC GCCCAGAAGG chr13:37312475-37312575 - 58 8.04e-07 CTCGATGATA CCACCAGATGGCGATGTTGG CCTAAGTTGT chr19:46523701-46523801 + 64 9.59e-07 TGCCCATTCA CGGGCTCAGGGCAGGGGGGC TGCCTGCAGC chr18:75342706-75342806 + 12 9.59e-07 GGCTCGCACC CCGGGAGGCGGCGCAGGAGA CCCGAGCGCG chr8:48464909-48465009 - 36 1.24e-06 TGCGCCTCTT CTCGCAGGTGGCAGCAGCCT CTGCGGATGT chr3:104992702-104992802 + 20 1.35e-06 CCACGTCCGA ACACCAGGGGGCGCGAGCAA CCTAGCTTTC chr6:8622970-8623070 + 74 1.59e-06 CCAACCAATG AGACCAGGTGGCATTGTGGC TCAGAGT chr18:61890498-61890598 + 70 2.38e-06 TGAAGAGAAA CCTGCACGGTGTAGAGGGGA CTAGGTGGAG chr1:7397664-7397764 - 8 3.77e-06 CAGACTGGAA CTCTCACGTGGCGCGGGTGC ACAGAAC chr12:76644337-76644437 + 4 4.37e-06 CTT CCCGCACACGGCACGGGAAG TTTCATCTGT chr11:98294611-98294711 - 25 8.23e-06 TTGGCCGGGG CCCCCACGGTGTCGGGGAGC AGGAGGAATC chr3:88200809-88200909 + 29 3.93e-05 CCTGTCATCG CCGGGACATCGCGGGACTCC ACGCAGCCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCAGRKGGCASDRKNGM MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:62023075-62023175 9.9e-11 40_[+6]_40 chr15:68205066-68205166 1.6e-10 18_[-6]_62 chr13:53109417-53109517 7.4e-09 32_[+6]_48 chr10:5865919-5866019 9.9e-09 36_[+6]_44 chr13:99837725-99837825 3.6e-08 54_[-6]_26 chr5:27074951-27075051 1.3e-07 49_[+6]_31 chr14:31385938-31386038 1.3e-07 5_[+6]_75 chr3:59059172-59059272 1.9e-07 52_[-6]_28 chr16:74134953-74135053 2.4e-07 10_[-6]_70 chr14:64858514-64858614 3.2e-07 37_[-6]_43 chr11:61619703-61619803 3.5e-07 7_[-6]_73 chr1:130350230-130350330 3.5e-07 43_[-6]_37 chr16:9009345-9009445 3.8e-07 74_[+6]_6 chr3:130425375-130425475 5.1e-07 4_[+6]_76 chr1:164898693-164898793 7.4e-07 12_[+6]_68 chr13:37312475-37312575 8e-07 57_[-6]_23 chr19:46523701-46523801 9.6e-07 63_[+6]_17 chr18:75342706-75342806 9.6e-07 11_[+6]_69 chr8:48464909-48465009 1.2e-06 35_[-6]_45 chr3:104992702-104992802 1.3e-06 19_[+6]_61 chr6:8622970-8623070 1.6e-06 73_[+6]_7 chr18:61890498-61890598 2.4e-06 69_[+6]_11 chr1:7397664-7397764 3.8e-06 7_[-6]_73 chr12:76644337-76644437 4.4e-06 3_[+6]_77 chr11:98294611-98294711 8.2e-06 24_[-6]_56 chr3:88200809-88200909 3.9e-05 28_[+6]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCAGRKGGCASDRKNGM MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCASCAGRKGGCASDRKNGM width=20 seqs=26 chr18:62023075-62023175 ( 41) CCAGCAGGGGGCAGTGGTGT 1 chr15:68205066-68205166 ( 19) CCAGCAGGTGGCAGAGTTGC 1 chr13:53109417-53109517 ( 33) CCAGCAGATGGCAGCATCGA 1 chr10:5865919-5866019 ( 37) CCTGCAGAGGGCAGAAGAGA 1 chr13:99837725-99837825 ( 55) CCAGGAGATGGCGCTAGGGC 1 chr5:27074951-27075051 ( 50) CCAGCAGAGGGCAGAGTTTA 1 chr14:31385938-31386038 ( 6) CCACTAGGGGGCAGGAGGCT 1 chr3:59059172-59059272 ( 53) CCACAAGAGGGCACTAGTGA 1 chr16:74134953-74135053 ( 11) CCTGCAGGAGGCAGTTTAGC 1 chr14:64858514-64858614 ( 38) CCAGCTTGGGGCAGGGTGGA 1 chr11:61619703-61619803 ( 8) CCAGCTGGGGGCGCTTCTGC 1 chr1:130350230-130350330 ( 44) CCACTAGGTGGCATTGTAGT 1 chr16:9009345-9009445 ( 75) CCACTAGGTGGTAGCATCGC 1 chr3:130425375-130425475 ( 5) CCTGCAGGTGGCACTTCACC 1 chr1:164898693-164898793 ( 13) ACCCTAGAGGGCAGCAGCGC 1 chr13:37312475-37312575 ( 58) CCACCAGATGGCGATGTTGG 1 chr19:46523701-46523801 ( 64) CGGGCTCAGGGCAGGGGGGC 1 chr18:75342706-75342806 ( 12) CCGGGAGGCGGCGCAGGAGA 1 chr8:48464909-48465009 ( 36) CTCGCAGGTGGCAGCAGCCT 1 chr3:104992702-104992802 ( 20) ACACCAGGGGGCGCGAGCAA 1 chr6:8622970-8623070 ( 74) AGACCAGGTGGCATTGTGGC 1 chr18:61890498-61890598 ( 70) CCTGCACGGTGTAGAGGGGA 1 chr1:7397664-7397764 ( 8) CTCTCACGTGGCGCGGGTGC 1 chr12:76644337-76644437 ( 4) CCCGCACACGGCACGGGAAG 1 chr11:98294611-98294711 ( 25) CCCCCACGGTGTCGGGGAGC 1 chr3:88200809-88200909 ( 29) CCGGGACATCGCGGGACTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCAGRKGGCASDRKNGM MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 11.3982 E= 1.8e+001 -124 196 -1134 -1134 -1134 190 -156 -183 98 -24 -98 -83 -1134 61 144 -282 -282 161 -98 -83 170 -1134 -1134 -124 -1134 2 169 -282 49 -1134 144 -1134 -282 -156 102 63 -1134 -256 196 -183 -1134 -1134 214 -1134 -1134 196 -1134 -124 134 -256 25 -1134 -282 44 135 -183 -51 -56 44 34 49 -1134 114 -124 -1134 -98 125 34 -2 -24 2 17 -183 -56 169 -282 17 102 -156 -83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCAGRKGGCASDRKNGM MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 26 E= 1.8e+001 0.115385 0.884615 0.000000 0.000000 0.000000 0.846154 0.076923 0.076923 0.538462 0.192308 0.115385 0.153846 0.000000 0.346154 0.615385 0.038462 0.038462 0.692308 0.115385 0.153846 0.884615 0.000000 0.000000 0.115385 0.000000 0.230769 0.730769 0.038462 0.384615 0.000000 0.615385 0.000000 0.038462 0.076923 0.461538 0.423077 0.000000 0.038462 0.884615 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 0.884615 0.000000 0.115385 0.692308 0.038462 0.269231 0.000000 0.038462 0.307692 0.576923 0.076923 0.192308 0.153846 0.307692 0.346154 0.384615 0.000000 0.500000 0.115385 0.000000 0.115385 0.538462 0.346154 0.269231 0.192308 0.230769 0.307692 0.076923 0.153846 0.730769 0.038462 0.307692 0.461538 0.076923 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCAGRKGGCASDRKNGM MEME-6 regular expression -------------------------------------------------------------------------------- CCA[GC]CA[GC][GA][GT]GGC[AG][GC][TG][GA][GT][TAG]G[CA] -------------------------------------------------------------------------------- Time 1765.88 secs. ******************************************************************************** ******************************************************************************** MOTIF SASMBASAGAVAGMBAGAMDSAGAGASA MEME-7 width = 28 sites = 15 llr = 262 E-value = 4.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SASMBASAGAVAGMBAGAMDSAGAGASA MEME-7 Description -------------------------------------------------------------------------------- Simplified A :915:928:739:6:71734:9:72928 pos.-specific C 5:334:311:4:145::15:5:21115: probability G 515:3:51713:9:318:1351617132 matrix T :::131:132:1::321213::21:::: bits 2.1 1.9 1.7 1.5 * * Relative 1.3 * * ** * * * * Entropy 1.1 ** * *** * ** ** * (25.2 bits) 0.9 ** * *** *** *** ** ** * 0.6 **** ***** ******* *** **** 0.4 ****************** ********* 0.2 **************************** 0.0 ---------------------------- Multilevel CAGACAGAGACAGACAGACACAGAGACA consensus G CCT C TTG CGT TATG C A GG sequence G A A T G T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASMBASAGAVAGMBAGAMDSAGAGASA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chr1:130575999-130576099 - 2 1.49e-12 GAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGA G chr8:116111285-116111385 + 38 1.49e-12 ATAGCAACga gagagagagagagagagagagagagaga gagagagaga chr18:5486295-5486395 - 70 6.05e-12 AGA CACACACAGACACACAGACACACAGACA CACAGACACA chr18:33810657-33810757 + 33 5.28e-11 GCCTGTCTCA GAGATACAGAGAGCCTGTCTCAGAGACG CAGAGAGCCT chr5:128144247-128144347 - 61 1.15e-09 TTTCAAAGAA CAGCCTGAGAGAGCTAGATTCAGAAAGA TTTGCATAAG chr4:77427407-77427507 + 22 2.22e-09 GAGCATAAAA GACCTAGAGTAAGAGAGAAGCATGGAAA AGAACTGAAT chr13:28718721-28718821 + 5 3.48e-09 CTCA CAGATAATTACAGCCTGCCAGAGAGACA CAGCTCTAAC chr11:112470306-11247040 + 3 4.15e-09 CA GAGTTAGAGACAGACAAACTCATCGCCA CAGCTGAGCA chr10:11449955-11450055 - 28 4.52e-09 GCATGCATTA CACCGAGAGAGAGCTGGATGGGGAGAAA CGTTTTCGAG chr5:51590505-51590605 - 58 9.54e-09 TGCTAACATA CAAATAAAGTATGCTAGAATGACAGACA GTGAGGCTGG chr6:70453175-70453275 - 42 1.53e-08 GAACAAGCTA GACACAGGTAAAGACAGAATGATCAAGA GACTCAGAAG chr5:149320571-149320671 - 40 2.96e-08 CTACAGAGCA CAGCCAGATGCAGACAGAAGGAGGAGCG CTGAGAGACC chr19:20253434-20253534 - 40 3.66e-08 ATGGAAAGTA CACACACACACACACATACACACACACA CACACACACA chr5:82441286-82441386 - 44 7.61e-08 GCAGTTGGTA GGATCAAATACAGAGTGTCACAGAGAAG AGTTCTAAAA chr11:87448116-87448216 + 68 1.76e-06 ATTGGCTGTT CGGCGACCGTATGCTAATCGCGGTGACA GTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASMBASAGAVAGMBAGAMDSAGAGASA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:130575999-130576099 1.5e-12 1_[-7]_71 chr8:116111285-116111385 1.5e-12 37_[+7]_35 chr18:5486295-5486395 6e-12 69_[-7]_3 chr18:33810657-33810757 5.3e-11 32_[+7]_40 chr5:128144247-128144347 1.1e-09 60_[-7]_12 chr4:77427407-77427507 2.2e-09 21_[+7]_51 chr13:28718721-28718821 3.5e-09 4_[+7]_68 chr11:112470306-11247040 4.1e-09 2_[+7]_70 chr10:11449955-11450055 4.5e-09 27_[-7]_45 chr5:51590505-51590605 9.5e-09 57_[-7]_15 chr6:70453175-70453275 1.5e-08 41_[-7]_31 chr5:149320571-149320671 3e-08 39_[-7]_33 chr19:20253434-20253534 3.7e-08 39_[-7]_33 chr5:82441286-82441386 7.6e-08 43_[-7]_29 chr11:87448116-87448216 1.8e-06 67_[+7]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASMBASAGAVAGMBAGAMDSAGAGASA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SASMBASAGAVAGMBAGAMDSAGAGASA width=28 seqs=15 chr1:130575999-130576099 ( 2) GAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr8:116111285-116111385 ( 38) GAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr18:5486295-5486395 ( 70) CACACACAGACACACAGACACACAGACA 1 chr18:33810657-33810757 ( 33) GAGATACAGAGAGCCTGTCTCAGAGACG 1 chr5:128144247-128144347 ( 61) CAGCCTGAGAGAGCTAGATTCAGAAAGA 1 chr4:77427407-77427507 ( 22) GACCTAGAGTAAGAGAGAAGCATGGAAA 1 chr13:28718721-28718821 ( 5) CAGATAATTACAGCCTGCCAGAGAGACA 1 chr11:112470306-11247040 ( 3) GAGTTAGAGACAGACAAACTCATCGCCA 1 chr10:11449955-11450055 ( 28) CACCGAGAGAGAGCTGGATGGGGAGAAA 1 chr5:51590505-51590605 ( 58) CAAATAAAGTATGCTAGAATGACAGACA 1 chr6:70453175-70453275 ( 42) GACACAGGTAAAGACAGAATGATCAAGA 1 chr5:149320571-149320671 ( 40) CAGCCAGATGCAGACAGAAGGAGGAGCG 1 chr19:20253434-20253534 ( 40) CACACACACACACACATACACACACACA 1 chr5:82441286-82441386 ( 44) GGATCAAATACAGAGTGTCACAGAGAAG 1 chr11:87448116-87448216 ( 68) CGGCGACCGTATGCTAATCGCGGTGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASMBASAGAVAGMBAGAMDSAGAGASA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 11.4363 E= 4.6e+000 -1055 123 104 -1055 167 -1055 -77 -1055 -103 55 123 -1055 97 55 -1055 -103 -1055 82 23 29 177 -1055 -1055 -203 -45 23 123 -1055 155 -176 -176 -203 -1055 -176 155 -3 142 -1055 -176 -45 -3 82 55 -1055 167 -1055 -1055 -103 -1055 -77 193 -1055 114 82 -1055 -1055 -1055 104 23 -3 142 -1055 -176 -45 -103 -1055 182 -203 142 -176 -1055 -45 -3 104 -77 -103 55 -1055 23 29 -1055 123 104 -1055 167 -1055 -77 -1055 -1055 -18 140 -45 129 -77 -77 -203 -45 -176 169 -1055 167 -176 -176 -1055 -45 123 23 -1055 155 -1055 -18 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASMBASAGAVAGMBAGAMDSAGAGASA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 15 E= 4.6e+000 0.000000 0.533333 0.466667 0.000000 0.866667 0.000000 0.133333 0.000000 0.133333 0.333333 0.533333 0.000000 0.533333 0.333333 0.000000 0.133333 0.000000 0.400000 0.266667 0.333333 0.933333 0.000000 0.000000 0.066667 0.200000 0.266667 0.533333 0.000000 0.800000 0.066667 0.066667 0.066667 0.000000 0.066667 0.666667 0.266667 0.733333 0.000000 0.066667 0.200000 0.266667 0.400000 0.333333 0.000000 0.866667 0.000000 0.000000 0.133333 0.000000 0.133333 0.866667 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.466667 0.266667 0.266667 0.733333 0.000000 0.066667 0.200000 0.133333 0.000000 0.800000 0.066667 0.733333 0.066667 0.000000 0.200000 0.266667 0.466667 0.133333 0.133333 0.400000 0.000000 0.266667 0.333333 0.000000 0.533333 0.466667 0.000000 0.866667 0.000000 0.133333 0.000000 0.000000 0.200000 0.600000 0.200000 0.666667 0.133333 0.133333 0.066667 0.200000 0.066667 0.733333 0.000000 0.866667 0.066667 0.066667 0.000000 0.200000 0.533333 0.266667 0.000000 0.800000 0.000000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASMBASAGAVAGMBAGAMDSAGAGASA MEME-7 regular expression -------------------------------------------------------------------------------- [CG]A[GC][AC][CTG]A[GCA]A[GT][AT][CGA]AG[AC][CGT][AT]G[AT][CA][ATG][CG]A[GCT]A[GA]A[CGA][AG] -------------------------------------------------------------------------------- Time 2037.67 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGSAGSAGGC MEME-8 width = 11 sites = 50 llr = 483 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGSAGSAGGC MEME-8 Description -------------------------------------------------------------------------------- Simplified A 18:271:a11: pos.-specific C 62:41:4::39 probability G 3:a4196:96: matrix T ::::1::::11 bits 2.1 * 1.9 * 1.7 * * * 1.5 * * ** * Relative 1.3 ** * ** * Entropy 1.1 ** **** * (13.9 bits) 0.9 *** **** * 0.6 *********** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel CAGCAGGAGGC consensus G G C C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAGSAGGC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr8:31031675-31031775 + 79 1.43e-07 CTTCCGGGGC CAGCAGGAGGC GCAAAAAGGC chr19:18078250-18078350 + 13 4.30e-07 AACAGTAAAG CAGCAGCAGGC AGTGGCTGAC chr5:141884333-141884433 - 34 8.61e-07 ATTAGATACA CAGCAGGAGCC AGCTGGCTGT chr12:26877578-26877678 + 21 8.61e-07 ATCAGGCAGA GAGCAGGAGGC TCCTGCAGGG chr5:71970059-71970159 + 30 8.61e-07 AGAAGAGCTT CAGCAGGAGCC TAAATTAATC chr10:70380006-70380106 + 25 8.61e-07 ATCACATGAT GAGCAGGAGGC AGGCCCTGGG chr18:79465850-79465950 + 75 1.32e-06 AACAAGAGCA GAGGAGGAGGC TAAGTAACTA chr7:134566326-134566426 - 28 2.07e-06 AGGAAGTGAA CAGAAGCAGGC ATTGCACAGG chr8:26351902-26352002 + 64 3.41e-06 GCAGTGAACA CCGGAGCAGGC TGCCAGACAC chr5:132817303-132817403 - 73 3.41e-06 GGTGAGCCTG GAGAAGGAGGC CTTTCAACAG chr14:66754562-66754662 - 83 4.70e-06 CTCCCCA GAGAAGCAGGC AGAGCCAGTT chr6:28203498-28203598 - 28 4.70e-06 GAGACTCTTG GAGGAGCAGCC CTACTCACAT chr17:62734924-62735024 + 59 4.70e-06 TTAAACCCCA CAGGCGGAGGC TCAGATTACC chr6:71763985-71764085 + 45 4.99e-06 GACAAAACAC CAGGAGGAGGT CATGGGCAAA chr14:11983066-11983166 - 44 5.28e-06 GTGGGTTCCT CAGCAGCAGGT AATTTCTGCA chr11:42839898-42839998 - 5 6.18e-06 TCAAAACCGA CAGCAGGAGAC TGTG chr1:143148052-143148152 + 17 6.18e-06 CTCCTAAGTG CAGCAGGAGAC ATCACACCTG chr1:116578457-116578557 + 45 6.18e-06 CTTTCCAAGT CAGCAGGAGTC ATTCATTTTG chr4:68022777-68022877 - 86 7.05e-06 AGCC CAGGAGGAGAC AAGCAGCCAC chr19:46523701-46523801 - 85 8.01e-06 CTGCA CAGCTGCAGGC AGCCCCCCTG chr5:149320571-149320671 + 87 1.15e-05 GCTTTGATTT CAGAGGCAGGC AGG chr13:18339078-18339178 + 78 1.15e-05 CGCTGGCTGC CAGCAGGAGCT TGTATGACCA chr15:39829830-39829930 + 63 1.38e-05 GATACTAAGA CAGGCGCAGCC TCTATTTGCA chr8:90886665-90886765 - 50 1.38e-05 CTAACTAGTA CAGACGCAGGC GCAAACATTA chr14:67123874-67123974 + 30 1.38e-05 ggagcagcag cagcagcagCT ACCATATGCT chr16:13447895-13447995 + 84 1.55e-05 TCCCTGTTCC CAGGAGGAAGC GCGGTG chr13:46217999-46218099 + 43 1.55e-05 GGAGCGCTGA GCGCAGGAGCC GAGATGCTTC chr3:127367485-127367585 + 44 1.55e-05 TGGTAAATCC CAGGAAGAGGC TTGGCGCTTA chr19:16386064-16386164 - 15 1.76e-05 CAACTCTGTG CAGCAGCAAGC TGCACCCTCA chr16:28511313-28511413 + 71 1.76e-05 TGCATGCTAG GCGGAGGAGCC ACGCCCACTT chr6:70453175-70453275 - 27 1.76e-05 TCAAGAGACT CAGAAGGAGTC AGAAGATTAC chr2:106650139-106650239 + 34 1.90e-05 ACACGCTGAA GCGCAGCAGCC AATCACGAGT chr2:61547919-61548019 + 71 1.90e-05 CCAGGCACAT CAGGAACAGGC TGTCAAAGAC chr4:70046700-70046800 + 66 1.90e-05 TAATTCAATG CAGGAACAGGC TGTGCTACTG chr1:179645591-179645691 + 26 2.14e-05 CTCACTGGTT CAGATGCAGGC GATGAGCCCC chr9:88522735-88522835 - 7 2.38e-05 GTGACAGAGG GAGGGGCAGCC TCGATC chr8:118182856-118182956 + 31 2.38e-05 GAGGCTCTGC AAGAAGGAGGC ATGCCTGTCT chr8:28688030-28688130 + 34 2.53e-05 CCAGCTCTTG AAGCAGCAGCC AGGAGAAACC chr1:194412227-194412327 - 54 2.53e-05 GCGGTGTTGG GAGAAGGAGGT GCCAATGGGG chr12:107927927-10792802 + 28 2.53e-05 GGCTGGGTGT GAGAAGGAGGT TCAGAGGACT chr4:125696179-125696279 + 3 3.41e-05 GC CCGGTGCAGGC TCATCTCGGC chr17:28030341-28030441 - 57 3.69e-05 TCTCCTGCCT CAGGAGGTGGC GCGTCCTTGG chr2:160272624-160272724 + 40 4.52e-05 CTTTGTGTGG CAGGCGCAGTC TCCTCAGAAT chr12:12420802-12420902 - 34 4.84e-05 AGCTCAGAAG CCGGAGCAGCT ACGCAGGGCG chr2:159475970-159476070 + 38 5.23e-05 CTTCAGGCTG CAGGTGGAGTC TCATCAGTAT chr9:27192001-27192101 + 72 5.23e-05 TCATCAGCAT CAGCGGGAAGC TGGCACCTGC chr6:145340580-145340680 + 3 5.72e-05 GC GAGCGGGAGAC TCCCCAGGGC chr3:118431278-118431378 - 8 7.20e-05 TTGTGCTTCA GCGGGGCAGCC TGACTTA chr14:29937280-29937380 + 6 1.27e-04 CGATG ACGCCGGAGGC TTATCGCAGA chr4:8647004-8647104 - 53 1.51e-04 CGCTCCGAGC GAGCGGGCGGC CCGGGCAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAGSAGGC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:31031675-31031775 1.4e-07 78_[+8]_11 chr19:18078250-18078350 4.3e-07 12_[+8]_77 chr5:141884333-141884433 8.6e-07 33_[-8]_56 chr12:26877578-26877678 8.6e-07 20_[+8]_69 chr5:71970059-71970159 8.6e-07 29_[+8]_60 chr10:70380006-70380106 8.6e-07 24_[+8]_65 chr18:79465850-79465950 1.3e-06 74_[+8]_15 chr7:134566326-134566426 2.1e-06 27_[-8]_62 chr8:26351902-26352002 3.4e-06 63_[+8]_26 chr5:132817303-132817403 3.4e-06 72_[-8]_17 chr14:66754562-66754662 4.7e-06 82_[-8]_7 chr6:28203498-28203598 4.7e-06 27_[-8]_62 chr17:62734924-62735024 4.7e-06 58_[+8]_31 chr6:71763985-71764085 5e-06 44_[+8]_45 chr14:11983066-11983166 5.3e-06 43_[-8]_46 chr11:42839898-42839998 6.2e-06 4_[-8]_85 chr1:143148052-143148152 6.2e-06 16_[+8]_73 chr1:116578457-116578557 6.2e-06 44_[+8]_45 chr4:68022777-68022877 7e-06 85_[-8]_4 chr19:46523701-46523801 8e-06 84_[-8]_5 chr5:149320571-149320671 1.2e-05 86_[+8]_3 chr13:18339078-18339178 1.2e-05 77_[+8]_12 chr15:39829830-39829930 1.4e-05 62_[+8]_27 chr8:90886665-90886765 1.4e-05 49_[-8]_40 chr14:67123874-67123974 1.4e-05 29_[+8]_60 chr16:13447895-13447995 1.5e-05 83_[+8]_6 chr13:46217999-46218099 1.5e-05 42_[+8]_47 chr3:127367485-127367585 1.5e-05 43_[+8]_46 chr19:16386064-16386164 1.8e-05 14_[-8]_75 chr16:28511313-28511413 1.8e-05 70_[+8]_19 chr6:70453175-70453275 1.8e-05 26_[-8]_63 chr2:106650139-106650239 1.9e-05 33_[+8]_56 chr2:61547919-61548019 1.9e-05 70_[+8]_19 chr4:70046700-70046800 1.9e-05 65_[+8]_24 chr1:179645591-179645691 2.1e-05 25_[+8]_64 chr9:88522735-88522835 2.4e-05 6_[-8]_83 chr8:118182856-118182956 2.4e-05 30_[+8]_59 chr8:28688030-28688130 2.5e-05 33_[+8]_56 chr1:194412227-194412327 2.5e-05 53_[-8]_36 chr12:107927927-10792802 2.5e-05 27_[+8]_62 chr4:125696179-125696279 3.4e-05 2_[+8]_87 chr17:28030341-28030441 3.7e-05 56_[-8]_33 chr2:160272624-160272724 4.5e-05 39_[+8]_50 chr12:12420802-12420902 4.8e-05 33_[-8]_56 chr2:159475970-159476070 5.2e-05 37_[+8]_52 chr9:27192001-27192101 5.2e-05 71_[+8]_18 chr6:145340580-145340680 5.7e-05 2_[+8]_87 chr3:118431278-118431378 7.2e-05 7_[-8]_82 chr14:29937280-29937380 0.00013 5_[+8]_84 chr4:8647004-8647104 0.00015 52_[-8]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAGSAGGC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGSAGSAGGC width=11 seqs=50 chr8:31031675-31031775 ( 79) CAGCAGGAGGC 1 chr19:18078250-18078350 ( 13) CAGCAGCAGGC 1 chr5:141884333-141884433 ( 34) CAGCAGGAGCC 1 chr12:26877578-26877678 ( 21) GAGCAGGAGGC 1 chr5:71970059-71970159 ( 30) CAGCAGGAGCC 1 chr10:70380006-70380106 ( 25) GAGCAGGAGGC 1 chr18:79465850-79465950 ( 75) GAGGAGGAGGC 1 chr7:134566326-134566426 ( 28) CAGAAGCAGGC 1 chr8:26351902-26352002 ( 64) CCGGAGCAGGC 1 chr5:132817303-132817403 ( 73) GAGAAGGAGGC 1 chr14:66754562-66754662 ( 83) GAGAAGCAGGC 1 chr6:28203498-28203598 ( 28) GAGGAGCAGCC 1 chr17:62734924-62735024 ( 59) CAGGCGGAGGC 1 chr6:71763985-71764085 ( 45) CAGGAGGAGGT 1 chr14:11983066-11983166 ( 44) CAGCAGCAGGT 1 chr11:42839898-42839998 ( 5) CAGCAGGAGAC 1 chr1:143148052-143148152 ( 17) CAGCAGGAGAC 1 chr1:116578457-116578557 ( 45) CAGCAGGAGTC 1 chr4:68022777-68022877 ( 86) CAGGAGGAGAC 1 chr19:46523701-46523801 ( 85) CAGCTGCAGGC 1 chr5:149320571-149320671 ( 87) CAGAGGCAGGC 1 chr13:18339078-18339178 ( 78) CAGCAGGAGCT 1 chr15:39829830-39829930 ( 63) CAGGCGCAGCC 1 chr8:90886665-90886765 ( 50) CAGACGCAGGC 1 chr14:67123874-67123974 ( 30) CAGCAGCAGCT 1 chr16:13447895-13447995 ( 84) CAGGAGGAAGC 1 chr13:46217999-46218099 ( 43) GCGCAGGAGCC 1 chr3:127367485-127367585 ( 44) CAGGAAGAGGC 1 chr19:16386064-16386164 ( 15) CAGCAGCAAGC 1 chr16:28511313-28511413 ( 71) GCGGAGGAGCC 1 chr6:70453175-70453275 ( 27) CAGAAGGAGTC 1 chr2:106650139-106650239 ( 34) GCGCAGCAGCC 1 chr2:61547919-61548019 ( 71) CAGGAACAGGC 1 chr4:70046700-70046800 ( 66) CAGGAACAGGC 1 chr1:179645591-179645691 ( 26) CAGATGCAGGC 1 chr9:88522735-88522835 ( 7) GAGGGGCAGCC 1 chr8:118182856-118182956 ( 31) AAGAAGGAGGC 1 chr8:28688030-28688130 ( 34) AAGCAGCAGCC 1 chr1:194412227-194412327 ( 54) GAGAAGGAGGT 1 chr12:107927927-10792802 ( 28) GAGAAGGAGGT 1 chr4:125696179-125696279 ( 3) CCGGTGCAGGC 1 chr17:28030341-28030441 ( 57) CAGGAGGTGGC 1 chr2:160272624-160272724 ( 40) CAGGCGCAGTC 1 chr12:12420802-12420902 ( 34) CCGGAGCAGCT 1 chr2:159475970-159476070 ( 38) CAGGTGGAGTC 1 chr9:27192001-27192101 ( 72) CAGCGGGAAGC 1 chr6:145340580-145340680 ( 3) GAGCGGGAGAC 1 chr3:118431278-118431378 ( 8) GCGGGGCAGCC 1 chr14:29937280-29937380 ( 6) ACGCCGGAGGC 1 chr4:8647004-8647104 ( 53) GAGCGGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAGSAGGC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.2091 E= 3.1e+003 -219 150 40 -1229 162 -50 -1229 -1229 -1229 -1229 214 -1229 -45 89 74 -1229 136 -118 -92 -177 -219 -1229 205 -1229 -1229 96 130 -1229 181 -350 -1229 -377 -219 -1229 205 -1229 -177 20 135 -177 -1229 192 -1229 -96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAGSAGGC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 50 E= 3.1e+003 0.060000 0.640000 0.300000 0.000000 0.840000 0.160000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.420000 0.380000 0.000000 0.700000 0.100000 0.120000 0.080000 0.060000 0.000000 0.940000 0.000000 0.000000 0.440000 0.560000 0.000000 0.960000 0.020000 0.000000 0.020000 0.060000 0.000000 0.940000 0.000000 0.080000 0.260000 0.580000 0.080000 0.000000 0.860000 0.000000 0.140000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSAGSAGGC MEME-8 regular expression -------------------------------------------------------------------------------- [CG]AG[CGA]AG[GC]AG[GC]C -------------------------------------------------------------------------------- Time 2300.56 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAGCAY MEME-9 width = 8 sites = 23 llr = 242 E-value = 4.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAGCAY MEME-9 Description -------------------------------------------------------------------------------- Simplified A :a:a::a: pos.-specific C a:a::a:3 probability G ::::a::: matrix T :::::::7 bits 2.1 * * ** 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACAGCAT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGCAY MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr2:141302875-141302975 - 86 1.47e-05 TGTAGGT CACAGCAT CTCTTCACAG chr5:44573050-44573150 + 47 1.47e-05 GTGCTCAAAG CACAGCAT ACCTGTATCC chr5:82441286-82441386 + 22 1.47e-05 CAGCAATTTC CACAGCAT GTAATTTTAG chr15:51395073-51395173 + 78 1.47e-05 ATTCATCAGG CACAGCAT CGGAGCTGCT chr2:69084438-69084538 + 24 1.47e-05 CTGCGATTTC CACAGCAT CAGACATTTA chr12:105475565-10547566 - 72 1.47e-05 AGCAATCTAG CACAGCAT ACAGACAGCT chr10:60952519-60952619 + 78 1.47e-05 ACCGCTTCCC CACAGCAT ACTGGCTGCC chr17:48776296-48776396 + 32 1.47e-05 TCTGCTCTCT CACAGCAT CTCTACCTTT chr5:50397295-50397395 + 87 1.47e-05 AACTCACCTA CACAGCAT TTTGAA chr19:18078250-18078350 - 68 1.47e-05 TGTTTTTTCC CACAGCAT GTACCTATGA chr9:29358181-29358281 + 39 1.47e-05 AGAAGGTTCA CACAGCAT CCAGCCAGGA chr3:34671189-34671289 - 62 1.47e-05 CAGGAGCCAG CACAGCAT ATTGAGATGT chr15:27787730-27787830 + 54 1.47e-05 GTTTCTGCTT CACAGCAT ACATCAACCA chr17:17294031-17294131 + 54 1.47e-05 ACTGGCCAAT CACAGCAT CAAGGAGGAT chr15:11364002-11364102 + 30 1.47e-05 GGGTTCTTGG CACAGCAT AGACATCTCT chr11:81725624-81725724 - 66 2.70e-05 CTCCTTTCTG CACAGCAC TTCCCAGGAA chr10:82178184-82178284 - 9 2.70e-05 GTCGGCAAGT CACAGCAC GGAACAGA chr8:10945810-10945910 + 63 2.70e-05 ACTGCATCTG CACAGCAC AGGGAGGAAG chr6:96349184-96349284 - 26 2.70e-05 CTGTAAGGAC CACAGCAC TGTCTATCCT chr5:4851570-4851670 - 16 2.70e-05 GGGTGCCCTG CACAGCAC TGAGTCCAGA chr15:73336302-73336402 + 39 2.70e-05 TCACTGAATC CACAGCAC CCACTCACTA chr3:130425375-130425475 - 67 2.70e-05 TTAATTTATC CACAGCAC CTACACATAT chr6:121424792-121424892 - 58 2.70e-05 CCCTGGCCAC CACAGCAC GGCTGAGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGCAY MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:141302875-141302975 1.5e-05 85_[-9]_7 chr5:44573050-44573150 1.5e-05 46_[+9]_46 chr5:82441286-82441386 1.5e-05 21_[+9]_71 chr15:51395073-51395173 1.5e-05 77_[+9]_15 chr2:69084438-69084538 1.5e-05 23_[+9]_69 chr12:105475565-10547566 1.5e-05 71_[-9]_21 chr10:60952519-60952619 1.5e-05 77_[+9]_15 chr17:48776296-48776396 1.5e-05 31_[+9]_61 chr5:50397295-50397395 1.5e-05 86_[+9]_6 chr19:18078250-18078350 1.5e-05 67_[-9]_25 chr9:29358181-29358281 1.5e-05 38_[+9]_54 chr3:34671189-34671289 1.5e-05 61_[-9]_31 chr15:27787730-27787830 1.5e-05 53_[+9]_39 chr17:17294031-17294131 1.5e-05 53_[+9]_39 chr15:11364002-11364102 1.5e-05 29_[+9]_63 chr11:81725624-81725724 2.7e-05 65_[-9]_27 chr10:82178184-82178284 2.7e-05 8_[-9]_84 chr8:10945810-10945910 2.7e-05 62_[+9]_30 chr6:96349184-96349284 2.7e-05 25_[-9]_67 chr5:4851570-4851670 2.7e-05 15_[-9]_77 chr15:73336302-73336402 2.7e-05 38_[+9]_54 chr3:130425375-130425475 2.7e-05 66_[-9]_26 chr6:121424792-121424892 2.7e-05 57_[-9]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGCAY MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAGCAY width=8 seqs=23 chr2:141302875-141302975 ( 86) CACAGCAT 1 chr5:44573050-44573150 ( 47) CACAGCAT 1 chr5:82441286-82441386 ( 22) CACAGCAT 1 chr15:51395073-51395173 ( 78) CACAGCAT 1 chr2:69084438-69084538 ( 24) CACAGCAT 1 chr12:105475565-10547566 ( 72) CACAGCAT 1 chr10:60952519-60952619 ( 78) CACAGCAT 1 chr17:48776296-48776396 ( 32) CACAGCAT 1 chr5:50397295-50397395 ( 87) CACAGCAT 1 chr19:18078250-18078350 ( 68) CACAGCAT 1 chr9:29358181-29358281 ( 39) CACAGCAT 1 chr3:34671189-34671289 ( 62) CACAGCAT 1 chr15:27787730-27787830 ( 54) CACAGCAT 1 chr17:17294031-17294131 ( 54) CACAGCAT 1 chr15:11364002-11364102 ( 30) CACAGCAT 1 chr11:81725624-81725724 ( 66) CACAGCAC 1 chr10:82178184-82178284 ( 9) CACAGCAC 1 chr8:10945810-10945910 ( 63) CACAGCAC 1 chr6:96349184-96349284 ( 26) CACAGCAC 1 chr5:4851570-4851670 ( 16) CACAGCAC 1 chr15:73336302-73336402 ( 39) CACAGCAC 1 chr3:130425375-130425475 ( 67) CACAGCAC 1 chr6:121424792-121424892 ( 58) CACAGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGCAY MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 10.8507 E= 4.5e+004 -1117 214 -1117 -1117 187 -1117 -1117 -1117 -1117 214 -1117 -1117 187 -1117 -1117 -1117 -1117 -1117 214 -1117 -1117 214 -1117 -1117 187 -1117 -1117 -1117 -1117 62 -1117 126 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGCAY MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.5e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.347826 0.000000 0.652174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAGCAY MEME-9 regular expression -------------------------------------------------------------------------------- CACAGCA[TC] -------------------------------------------------------------------------------- Time 2555.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCWGKGCWGG MEME-10 width = 11 sites = 32 llr = 334 E-value = 3.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCWGKGCWGG MEME-10 Description -------------------------------------------------------------------------------- Simplified A :2:6:2::6:: pos.-specific C 15a:::2a::: probability G 84:1a58:1a7 matrix T :::4:3::3:3 bits 2.1 * * * * 1.9 * * * * 1.7 * * * * 1.5 * * * ** * Relative 1.3 * * * ** ** Entropy 1.1 * * * ** ** (15.1 bits) 0.9 * * * ** ** 0.6 ***** ***** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GCCAGGGCAGG consensus G T T T T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGKGCWGG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr13:34687584-34687684 + 26 1.19e-07 TGAACTTGGG GCCAGGGCAGG TCCTCCTTTC chr15:12919882-12919982 - 62 2.39e-07 GTTGGGAGGC GGCAGGGCAGG ATGAGATCAC chr3:55888341-55888441 + 32 3.58e-07 GCAACCAGGA GCCTGGGCAGG ACACCGACTG chr12:76644337-76644437 + 44 5.96e-07 GCAGAGGCTT GCCAGGGCTGG GGCTCGGTTT chr8:126920827-126920927 + 70 7.40e-07 GGCCCAGTGA GCCAGTGCAGG ATGTCTGTGC chr15:94864252-94864352 - 14 1.00e-06 TTTTTCTCCA GGCAGTGCAGG TACAAGAAGC chr6:140157116-140157216 - 70 1.55e-06 GGGTGTACTT GCCTGTGCAGG TACACGTGGA chr18:4590645-4590745 - 23 1.96e-06 GGCTGGGCTG GGCTGGGCTGG GGTGTTTACC chrX:12857779-12857879 - 29 1.96e-06 TGAGACAGGG GGCAGAGCAGG AACATTGATC chr8:39966541-39966641 - 47 2.68e-06 TTAAGTTGTT GCCTGGGCAGT ATCAGATTTG chr10:11449955-11450055 + 4 3.23e-06 GAA GCCAGGCCAGG AAGCTCGAAA chr18:88376229-88376329 + 69 3.23e-06 CTCCCTCAAA GGCAGTGCTGG AAGTGGGAGA chr4:81005654-81005754 + 12 4.02e-06 CTTTTGAAAT GCCAGGGCTGT GCTCATTCCC chr6:71048398-71048498 + 13 5.91e-06 GGGCAGGGCC CGCAGGGCAGG AGCAGCTGGA chr14:69994654-69994754 - 78 5.91e-06 ATGCTCCAAG GCCTGGGCGGG GGTAGGAGTT chr5:144733799-144733899 - 78 6.44e-06 TTCACAGAGA GCCTGGGCTGT CTGTCTGCAG chrX:12468241-12468341 + 35 7.41e-06 ttcttaaaag gacagagcagg gaatgtcact chr6:10978012-10978112 - 52 8.22e-06 AATTGGATAA GGCAGAGCAGT ACTGACAGGG chr17:11210834-11210934 + 51 1.03e-05 TTTCCTGTCG CCCAGTGCAGG TGCAGGTGCA chr15:7194158-7194258 - 86 1.03e-05 GTGC GACAGTGCTGG GTGTTCGGAA chr11:28365157-28365257 - 7 1.64e-05 TCAGAACAGA GCCTGGCCAGT TGTGCC chr9:16422694-16422794 - 57 1.64e-05 CAAAGATACA GGCTGTGCTGT CTTCGTTCCT chr11:94160241-94160341 - 82 1.64e-05 TGAGTTGG CACAGGGCAGG GAAGGCAGAC chr11:81722189-81722289 - 47 1.77e-05 AGAGGAGAAT GGCTGACCAGG TTATGGGGGT chr3:116309929-116310029 - 19 1.77e-05 TCTTTCCAGA GACGGGGCAGG TTGAGTCTTT chr19:10277508-10277608 + 59 1.89e-05 TCTAGCTCTG GCCAGGCCGGG CTTTACTTCT chr16:29813276-29813376 + 83 2.02e-05 CAGAGATGAA ACCAGGGCAGG CACCGGA chr7:92325024-92325124 - 64 2.15e-05 TCTGGTTTGT GACTGTGCAGT AGAAAGAACC chr10:5865919-5866019 + 68 2.29e-05 cattaaagcc cccagagctgg agctgcagat chr14:88899303-88899403 + 42 2.29e-05 gtataaccct ggctgtcctgg aactcacttt chr4:104217263-104217363 + 81 3.87e-05 TTAAAGAAGC GGCTGAGCGGT GTTTGGTGG chr14:11983066-11983166 - 63 5.26e-05 TTCCTCAATG GGCGGAGCTGT GGGTTCCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGKGCWGG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:34687584-34687684 1.2e-07 25_[+10]_64 chr15:12919882-12919982 2.4e-07 61_[-10]_28 chr3:55888341-55888441 3.6e-07 31_[+10]_58 chr12:76644337-76644437 6e-07 43_[+10]_46 chr8:126920827-126920927 7.4e-07 69_[+10]_20 chr15:94864252-94864352 1e-06 13_[-10]_76 chr6:140157116-140157216 1.6e-06 69_[-10]_20 chr18:4590645-4590745 2e-06 22_[-10]_67 chrX:12857779-12857879 2e-06 28_[-10]_61 chr8:39966541-39966641 2.7e-06 46_[-10]_43 chr10:11449955-11450055 3.2e-06 3_[+10]_86 chr18:88376229-88376329 3.2e-06 68_[+10]_21 chr4:81005654-81005754 4e-06 11_[+10]_78 chr6:71048398-71048498 5.9e-06 12_[+10]_77 chr14:69994654-69994754 5.9e-06 77_[-10]_12 chr5:144733799-144733899 6.4e-06 77_[-10]_12 chrX:12468241-12468341 7.4e-06 34_[+10]_55 chr6:10978012-10978112 8.2e-06 51_[-10]_38 chr17:11210834-11210934 1e-05 50_[+10]_39 chr15:7194158-7194258 1e-05 85_[-10]_4 chr11:28365157-28365257 1.6e-05 6_[-10]_83 chr9:16422694-16422794 1.6e-05 56_[-10]_33 chr11:94160241-94160341 1.6e-05 81_[-10]_8 chr11:81722189-81722289 1.8e-05 46_[-10]_43 chr3:116309929-116310029 1.8e-05 18_[-10]_71 chr19:10277508-10277608 1.9e-05 58_[+10]_31 chr16:29813276-29813376 2e-05 82_[+10]_7 chr7:92325024-92325124 2.2e-05 63_[-10]_26 chr10:5865919-5866019 2.3e-05 67_[+10]_22 chr14:88899303-88899403 2.3e-05 41_[+10]_48 chr4:104217263-104217363 3.9e-05 80_[+10]_9 chr14:11983066-11983166 5.3e-05 62_[-10]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGKGCWGG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCWGKGCWGG width=11 seqs=32 chr13:34687584-34687684 ( 26) GCCAGGGCAGG 1 chr15:12919882-12919982 ( 62) GGCAGGGCAGG 1 chr3:55888341-55888441 ( 32) GCCTGGGCAGG 1 chr12:76644337-76644437 ( 44) GCCAGGGCTGG 1 chr8:126920827-126920927 ( 70) GCCAGTGCAGG 1 chr15:94864252-94864352 ( 14) GGCAGTGCAGG 1 chr6:140157116-140157216 ( 70) GCCTGTGCAGG 1 chr18:4590645-4590745 ( 23) GGCTGGGCTGG 1 chrX:12857779-12857879 ( 29) GGCAGAGCAGG 1 chr8:39966541-39966641 ( 47) GCCTGGGCAGT 1 chr10:11449955-11450055 ( 4) GCCAGGCCAGG 1 chr18:88376229-88376329 ( 69) GGCAGTGCTGG 1 chr4:81005654-81005754 ( 12) GCCAGGGCTGT 1 chr6:71048398-71048498 ( 13) CGCAGGGCAGG 1 chr14:69994654-69994754 ( 78) GCCTGGGCGGG 1 chr5:144733799-144733899 ( 78) GCCTGGGCTGT 1 chrX:12468241-12468341 ( 35) GACAGAGCAGG 1 chr6:10978012-10978112 ( 52) GGCAGAGCAGT 1 chr17:11210834-11210934 ( 51) CCCAGTGCAGG 1 chr15:7194158-7194258 ( 86) GACAGTGCTGG 1 chr11:28365157-28365257 ( 7) GCCTGGCCAGT 1 chr9:16422694-16422794 ( 57) GGCTGTGCTGT 1 chr11:94160241-94160341 ( 82) CACAGGGCAGG 1 chr11:81722189-81722289 ( 47) GGCTGACCAGG 1 chr3:116309929-116310029 ( 19) GACGGGGCAGG 1 chr19:10277508-10277608 ( 59) GCCAGGCCGGG 1 chr16:29813276-29813376 ( 83) ACCAGGGCAGG 1 chr7:92325024-92325124 ( 64) GACTGTGCAGT 1 chr10:5865919-5866019 ( 68) CCCAGAGCTGG 1 chr14:88899303-88899403 ( 42) GGCTGTCCTGG 1 chr4:104217263-104217363 ( 81) GGCTGAGCGGT 1 chr14:11983066-11983166 ( 63) GGCGGAGCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGKGCWGG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 11.4571 E= 3.5e+004 -312 -86 189 -1164 -81 105 72 -1164 -1164 214 -1164 -1164 104 -1164 -186 46 -1164 -1164 214 -1164 -32 -1164 114 4 -1164 -54 189 -1164 -1164 214 -1164 -1164 112 -1164 -127 19 -1164 -1164 214 -1164 -1164 -1164 166 4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGKGCWGG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 32 E= 3.5e+004 0.031250 0.125000 0.843750 0.000000 0.156250 0.468750 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.562500 0.000000 0.062500 0.375000 0.000000 0.000000 1.000000 0.000000 0.218750 0.000000 0.500000 0.281250 0.000000 0.156250 0.843750 0.000000 0.000000 1.000000 0.000000 0.000000 0.593750 0.000000 0.093750 0.312500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.718750 0.281250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCWGKGCWGG MEME-10 regular expression -------------------------------------------------------------------------------- G[CG]C[AT]G[GTA]GC[AT]G[GT] -------------------------------------------------------------------------------- Time 2809.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:123427397-123427497 9.58e-01 100 chr17:73135297-73135397 1.38e-01 100 chr6:121424792-121424892 2.53e-06 46_[-5(4.47e-05)]_9_[-3(1.12e-05)]_\ 16 chr14:106041661-10604176 1.97e-01 91_[+2(6.94e-05)]_1 chr2:85543578-85543678 3.33e-03 13_[+8(8.22e-05)]_19_[+2(6.94e-05)]_\ 49 chr1:13196812-13196912 3.98e-01 100 chr12:30292860-30292960 7.44e-02 32_[-2(1.23e-05)]_60 chrX:69453757-69453857 8.39e-01 100 chr5:58776938-58777038 4.08e-03 83_[+10(4.08e-05)]_6 chr15:61179276-61179376 4.45e-01 45_[+2(1.23e-05)]_47 chr15:27959633-27959733 7.18e-03 36_[+7(5.25e-05)]_36 chr2:115042176-115042276 8.47e-01 100 chr11:20011192-20011292 2.04e-01 51_[+2(8.98e-05)]_41 chr1:178871980-178872080 9.97e-01 100 chr9:27192001-27192101 1.34e-02 71_[+8(5.23e-05)]_2_[+2(4.49e-05)]_\ 8 chr11:74440051-74440151 1.37e-01 65_[-7(4.82e-05)]_7 chr2:141463788-141463888 1.07e-01 34_[+2(3.47e-05)]_58 chr12:107927927-10792802 2.66e-05 16_[-3(1.72e-05)]_21_[+3(3.97e-06)]_\ 21 chr6:69942940-69943040 6.58e-01 100 chr11:36700251-36700351 1.09e-03 12_[+2(1.23e-05)]_60_[+9(5.40e-05)]_\ 12 chr3:37956665-37956765 1.37e-03 55_[+5(2.70e-05)]_37 chr12:97511707-97511807 1.63e-02 46_[+2(6.94e-05)]_46 chr1:42243611-42243711 1.21e-13 3_[+3(2.12e-05)]_2_[+1(2.85e-16)]_2_\ [+1(3.77e-06)]_12 chr2:117654475-117654575 1.07e-01 17_[+2(5.72e-05)]_75 chr8:116111285-116111385 4.67e-09 35_[+7(1.49e-12)]_[+7(1.49e-12)]_9 chr15:11364002-11364102 1.88e-03 29_[+9(1.47e-05)]_29_[+2(5.72e-05)]_\ 26 chr8:14152647-14152747 9.99e-01 100 chr2:161609742-161609842 1.01e-05 69_[+1(7.28e-06)]_1 chr16:29813276-29813376 8.47e-04 82_[+10(2.02e-05)]_7 chr8:31761657-31761757 2.73e-01 100 chr4:50008561-50008661 5.45e-02 77_[-3(1.28e-06)]_2 chr13:28811560-28811660 1.07e-01 100 chr9:45537268-45537368 4.64e-02 100 chr1:72076245-72076345 1.50e-01 100 chr10:107932352-10793245 1.43e-01 58_[+5(1.47e-05)]_34 chr7:131670648-131670748 2.47e-01 11_[+10(5.85e-05)]_78 chr10:113946569-11394666 3.29e-02 74_[-2(6.94e-05)]_18 chr5:66376811-66376911 1.84e-01 100 chr14:29296165-29296265 1.00e+00 100 chr3:88200809-88200909 5.95e-05 28_[+6(3.93e-05)]_30_[+3(4.48e-06)]_\ 1 chr17:17294031-17294131 4.35e-04 53_[+9(1.47e-05)]_39 chr19:10277508-10277608 2.81e-02 58_[+10(1.89e-05)]_31 chr14:75566617-75566717 8.21e-01 100 chr17:62734924-62735024 3.52e-04 58_[+8(4.70e-06)]_31 chr3:127367485-127367585 3.28e-01 43_[+8(1.55e-05)]_46 chr4:70046700-70046800 1.51e-01 65_[+8(1.90e-05)]_24 chr5:132817303-132817403 7.97e-07 19_[+4(1.30e-07)]_24_[-8(3.41e-06)]_\ 17 chr6:84775842-84775942 2.72e-03 57_[-3(1.39e-05)]_22 chr14:88899303-88899403 4.81e-03 41_[+10(2.29e-05)]_19_\ [+2(7.96e-05)]_21 chr9:115441325-115441425 8.57e-02 100 chr4:12212261-12212361 2.23e-03 27_[+7(2.51e-05)]_45 chr11:87448116-87448216 7.31e-03 67_[+7(1.76e-06)]_5 chr7:115315348-115315448 3.50e-02 100 chr4:62773779-62773879 8.69e-01 100 chr16:6333918-6334018 6.01e-01 100 chr2:102951694-102951794 8.18e-01 100 chr18:47224940-47225040 3.31e-02 100 chr13:107888521-10788862 3.03e-04 4_[+3(9.81e-05)]_24_[+1(1.01e-06)]_\ 21 chr8:126920827-126920927 4.54e-08 26_[+4(1.96e-08)]_14_\ [+10(7.40e-07)]_20 chr13:85513640-85513740 4.58e-03 1_[+3(4.27e-05)]_36_[+9(5.40e-05)]_\ 34 chr2:21554897-21554997 5.62e-04 11_[+8(1.90e-05)]_34_[+7(6.92e-05)]_\ 16 chr3:104992702-104992802 3.85e-03 19_[+6(1.35e-06)]_61 chr2:118061263-118061363 3.53e-01 100 chr19:20253434-20253534 1.86e-11 8_[-1(2.85e-16)]_[-1(4.29e-09)]_32 chr12:97833079-97833179 9.82e-01 100 chr10:69636175-69636275 5.08e-03 79_[+3(7.14e-06)] chr14:11983066-11983166 1.38e-03 43_[-8(5.28e-06)]_8_[-10(5.26e-05)]_\ 27 chr4:77427407-77427507 6.58e-04 21_[+7(2.22e-09)]_51 chr5:99441777-99441877 2.82e-01 1_[-3(4.70e-05)]_47_[-3(8.97e-05)]_\ 10 chr3:154816640-154816740 2.99e-02 100 chr3:21824052-21824152 2.84e-03 100 chr16:6964586-6964686 1.28e-01 100 chr19:26369175-26369275 3.68e-02 57_[-3(2.60e-05)]_22 chr2:68435731-68435831 6.35e-02 22_[-6(1.47e-05)]_58 chr3:130425375-130425475 1.04e-03 4_[+6(5.11e-07)]_42_[-9(2.70e-05)]_\ 26 chr8:126325047-126325147 7.36e-01 100 chr12:86798817-86798917 1.72e-02 100 chr2:164521721-164521821 2.01e-01 100 chr10:54052134-54052234 3.94e-01 100 chr2:122558266-122558366 2.87e-05 48_[-6(6.88e-05)]_10_[-3(6.50e-07)]_\ 1 chr13:107460961-10746106 3.88e-01 100 chr9:28887893-28887993 5.76e-03 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51_[-5(1.47e-05)]_41 chr8:33973923-33974023 9.87e-10 24_[-5(4.47e-05)]_37_[+4(7.21e-10)]_\ 2 chr15:41583708-41583808 9.84e-02 100 chr3:115604044-115604144 1.84e-01 100 chr14:85935005-85935105 1.40e-01 84_[+5(1.47e-05)]_8 chr18:34088723-34088823 1.28e-01 100 chr11:42839898-42839998 3.27e-03 4_[-8(6.18e-06)]_45_[+2(1.23e-05)]_\ 32 chr14:78614883-78614983 3.42e-01 100 chr1:141853750-141853850 6.00e-01 100 chr5:131801019-131801119 2.28e-01 100 chr3:29337773-29337873 6.32e-01 100 chr2:135124201-135124301 1.47e-03 100 chr10:53212544-53212644 7.42e-01 100 chr15:51395073-51395173 8.66e-04 48_[+8(8.80e-05)]_18_[+9(1.47e-05)]_\ 15 chr6:108307637-108307737 3.60e-12 38_[-1(9.97e-11)]_9_[-10(1.27e-06)]_\ 12 chr19:15052657-15052757 7.17e-01 100 chr6:140157116-140157216 6.22e-04 69_[-10(1.55e-06)]_20 chr14:71348267-71348367 2.22e-01 100 chr5:149320571-149320671 2.40e-07 39_[-7(2.96e-08)]_19_[+8(1.15e-05)]_\ 3 chr6:8622970-8623070 9.36e-05 73_[+6(1.59e-06)]_7 chr15:59596540-59596640 5.08e-06 30_[-4(1.21e-08)]_41 chr9:27361555-27361655 9.08e-01 100 chr12:52604642-52604742 1.65e-05 30_[-1(1.01e-06)]_6_[-3(3.51e-05)]_\ 13 chr5:82441286-82441386 2.48e-04 21_[+9(1.47e-05)]_14_[-7(7.61e-08)]_\ 29 chr19:36000767-36000867 9.94e-01 100 chr5:44573050-44573150 2.50e-01 46_[+9(1.47e-05)]_46 chr19:28589143-28589243 5.45e-01 100 chr1:179645591-179645691 9.23e-04 25_[+8(2.14e-05)]_53_[-8(2.30e-06)] chr5:51187221-51187321 2.10e-02 57_[+4(1.72e-05)]_14 chr11:108204184-10820428 1.48e-01 100 chr19:38771774-38771874 1.96e-01 68_[-4(4.33e-06)]_3 chr6:21746282-21746382 3.07e-01 100 chr11:81725624-81725724 1.18e-04 65_[-9(2.70e-05)]_27 chr10:72025306-72025406 5.60e-01 100 chr15:13222767-13222867 7.55e-01 100 chr18:31014386-31014486 3.96e-01 100 chr17:73491899-73491999 1.71e-01 87_[-8(2.14e-05)]_2 chr11:85541399-85541499 1.34e-03 38_[-3(1.39e-05)]_12_[+2(6.94e-05)]_\ 21 chr2:102027405-102027505 3.86e-01 25_[+2(4.49e-05)]_67 chr1:105180600-105180700 2.98e-01 100 chr5:27074951-27075051 1.05e-05 6_[-3(3.52e-06)]_22_[+6(1.26e-07)]_\ 31 chr18:63859905-63860005 5.09e-02 100 chr7:115745617-115745717 3.98e-01 100 chr5:144733799-144733899 1.90e-02 77_[-10(6.44e-06)]_12 chr1:116616345-116616445 1.85e-03 71_[+7(3.20e-05)]_1 chr14:69994654-69994754 2.55e-06 51_[-3(1.66e-06)]_5_[-10(5.91e-06)]_\ 12 chr5:128304272-128304372 1.43e-01 54_[-2(1.23e-05)]_38 chr2:18468029-18468129 6.91e-03 63_[+7(1.25e-05)]_9 chr2:76070306-76070406 3.38e-02 48_[+6(2.52e-05)]_32 chr6:51015598-51015698 4.02e-01 100 chr10:112626460-11262656 9.54e-01 100 chr13:110627514-11062761 1.17e-04 61_[-3(1.89e-06)]_18 chr11:112470306-11247040 3.81e-07 2_[+7(4.15e-09)]_1_[+10(8.06e-05)]_\ 58 chr2:33543957-33544057 1.48e-06 18_[+1(1.18e-07)]_28_[-3(1.09e-07)]_\ 3 chr17:72669175-72669275 9.80e-01 100 chr4:153634672-153634772 3.02e-02 60_[+5(1.47e-05)]_32 chr8:12302214-12302314 4.97e-01 100 chr5:84681740-84681840 9.02e-01 100 chr9:28507979-28508079 2.23e-01 7_[-9(5.40e-05)]_85 chr13:106789003-10678910 1.45e-01 21_[-5(1.47e-05)]_71 chrX:105391580-105391680 2.81e-02 54_[+8(5.72e-05)]_35 chr14:11711156-11711256 9.35e-01 100 chr2:143353363-143353463 3.42e-02 12_[+2(3.47e-05)]_64_[-5(2.70e-05)]_\ 8 chr8:101262565-101262665 8.73e-01 100 chr5:78501063-78501163 3.77e-11 22_[+1(2.85e-16)]_48 chr11:9629955-9630055 6.33e-04 47_[+4(5.41e-09)]_24 chr19:16386064-16386164 3.19e-03 14_[-8(1.76e-05)]_75 chr9:64628351-64628451 1.63e-01 89_[-2(5.72e-05)]_3 chr14:99894655-99894755 5.12e-02 3_[+9(5.40e-05)]_89 chr15:23581913-23582013 5.21e-03 2_[+2(6.94e-05)]_90 chr1:164898693-164898793 2.47e-03 12_[+6(7.35e-07)]_68 chr2:4108238-4108338 6.34e-01 100 chr5:27402390-27402490 1.23e-04 58_[-5(1.47e-05)]_34 chr17:70468032-70468132 1.50e-05 11_[-5(1.47e-05)]_8_[+3(8.00e-06)]_\ 52 chr11:81722189-81722289 1.05e-04 8_[+5(5.95e-05)]_3_[+3(1.39e-05)]_6_\ [-10(1.77e-05)]_43 chr2:141302875-141302975 4.72e-01 72_[-9(5.40e-05)]_5_[-9(1.47e-05)]_\ 7 chr17:43825816-43825916 5.89e-02 81_[-2(2.45e-05)]_11 chr14:105572261-10557236 6.01e-01 100 chr1:28976540-28976640 1.61e-01 24_[+2(2.45e-05)]_68 chr13:34687584-34687684 1.36e-04 25_[+10(1.19e-07)]_64 chr17:50119520-50119620 5.21e-01 100 chr10:12437977-12438077 2.54e-03 26_[-7(2.75e-05)]_46 chr15:27884758-27884858 2.67e-01 100 chr6:71048398-71048498 1.03e-08 12_[+10(5.91e-06)]_20_\ [-1(4.74e-07)]_27 chr3:51611774-51611874 3.84e-02 [-4(7.67e-05)]_71 chr14:29937280-29937380 1.19e-02 100 chr6:80856744-80856844 8.47e-03 30_[-2(4.49e-05)]_28_[-3(4.70e-05)]_\ 13 chr13:99837725-99837825 1.20e-02 54_[-6(3.59e-08)]_26 chr6:9062111-9062211 8.64e-02 100 chr5:141884333-141884433 4.87e-04 33_[-8(8.61e-07)]_56 chr2:103186536-103186636 2.54e-02 100 chr19:20228050-20228150 1.47e-01 100 chr7:50334941-50335041 6.33e-01 100 chr17:67119842-67119942 2.71e-01 100 chr7:54274014-54274114 3.97e-01 100 chr1:130575999-130576099 2.42e-13 1_[-7(1.49e-12)]_[-7(3.18e-08)]_21_\ [+3(1.46e-06)]_1 chr10:119318314-11931841 2.86e-03 44_[+5(1.47e-05)]_14_[+2(6.94e-05)]_\ 26 chr13:57619282-57619382 1.89e-03 53_[+3(2.35e-05)]_26 chr13:102134126-10213422 7.86e-01 100 chr10:72399728-72399828 1.38e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: compute-1-40.local ********************************************************************************