# DREME 4.12.0 # command: dreme -v 1 -oc /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/dreme_out -png -dna -p /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-centered -n /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/control-centered # positives: 4333 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/seqs-centered (Wed Jan 13 22:27:58 EST 2021) # negatives: 202202 from /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/MouseDNase/M1ScAtacSeqNEMO/BICCN_mouse_NEMO_snATAC-Seq_Chodl_reproduciblePeaks_enhancerShort.MemeChipResults/control-centered (Wed Jan 13 22:28:02 EST 2021) # host: compute-1-40.local # when: Thu Jan 14 00:04:33 EST 2021 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.273 C 0.228 G 0.227 T 0.272 MOTIF CAGGTR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAGGTR YACCTG 1015 12832 1.8e-278 7.7e-274 # CAGGTG CACCTG 861 9765 1.9e-262 8.5e-258 # CAGGTA TACCTG 181 3275 3.3e-028 1.5e-023 letter-probability matrix: alength= 4 w= 6 nsites= 1116 E= 7.7e-274 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.833333 0.000000 MOTIF CSGCD DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CSGCD HGCSG 1300 37302 7.5e-074 3.3e-069 # CCGCG CGCGG 142 1881 6.7e-035 3.0e-030 # CGGCG CGCCG 133 2133 2.1e-025 9.3e-021 # CCGCA TGCGG 303 7954 1.4e-020 6.2e-016 # CCGCT AGCGG 291 8721 5.8e-013 2.6e-008 # CGGCT AGCCG 335 10589 5.1e-012 2.3e-007 # CGGCA TGCCG 292 9085 2.7e-011 1.2e-006 letter-probability matrix: alength= 4 w= 5 nsites= 1479 E= 3.3e-069 0.000000 1.000000 0.000000 0.000000 0.000000 0.500338 0.499662 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.387424 0.000000 0.206897 0.405680 MOTIF CSGGS DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CSGGS SCCSG 641 18341 2.8e-033 1.2e-028 # CCGGG CCCGG 201 5349 1.6e-013 6.8e-009 # CGGGG CCCCG 239 6944 4.5e-012 1.8e-007 # CGGGC GCCCG 184 5474 7.0e-009 2.9e-004 # CCGGC GCCGG 53 1187 1.5e-006 6.4e-002 letter-probability matrix: alength= 4 w= 5 nsites= 594 E= 1.2e-028 0.000000 1.000000 0.000000 0.000000 0.000000 0.304714 0.695286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.378788 0.621212 0.000000 MOTIF BCGM DREME-4 # Word RC Word Pos Neg P-value E-value # BEST BCGM KCGV 1534 55788 8.0e-029 3.2e-024 # GCGC GCGC 423 12109 9.8e-022 3.9e-017 # CCGA TCGG 492 16944 1.6e-011 6.3e-007 # CCGC GCGG 204 5817 3.8e-011 1.5e-006 # GCGA TCGC 579 21638 3.3e-008 1.3e-003 # TCGA TCGA 248 9301 4.1e-004 1.7e+001 letter-probability matrix: alength= 4 w= 4 nsites= 2173 E= 3.2e-024 0.000000 0.348827 0.377819 0.273355 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.510815 0.489185 0.000000 0.000000 MOTIF BCAWTCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST BCAWTCA TGAWTGV 553 16487 1.4e-024 4.8e-020 # CCAATCA TGATTGG 97 2313 2.1e-009 7.4e-005 # TCATTCA TGAATGA 139 4171 7.3e-007 2.5e-002 # GCATTCA TGAATGC 114 3408 5.9e-006 2.1e-001 # GCAATCA TGATTGC 87 2489 1.6e-005 5.6e-001 # CCATTCA TGAATGG 100 3076 6.0e-005 2.1e+000 # TCAATCA TGATTGA 61 1803 5.9e-004 2.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 607 E= 4.8e-020 0.000000 0.331137 0.332784 0.336079 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.411862 0.000000 0.000000 0.588138 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ARGGK DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ARGGK MCCYT 2085 82464 2.8e-022 9.9e-018 # AAGGT ACCTT 636 22776 8.2e-012 2.8e-007 # AGGGG CCCCT 751 27722 1.9e-011 6.7e-007 # AGGGT ACCCT 651 26955 7.6e-004 2.6e+001 # AAGGG CCCTT 784 33670 6.6e-003 2.3e+002 letter-probability matrix: alength= 4 w= 5 nsites= 2796 E= 9.9e-018 1.000000 0.000000 0.000000 0.000000 0.496066 0.000000 0.503934 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.535408 0.464592 MOTIF CTWTTSA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTWTTSA TSAAWAG 371 11184 6.6e-016 2.2e-011 # CTTTTCA TGAAAAG 159 4603 1.4e-008 4.7e-004 # CTATTGA TCAATAG 48 1240 1.4e-004 4.5e+000 # CTATTCA TGAATAG 84 2578 2.1e-004 6.9e+000 # CTTTTGA TCAAAAG 91 3047 1.6e-003 5.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 387 E= 2.2e-011 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.343669 0.000000 0.000000 0.656331 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.638243 0.361757 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF BCG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST BCG CGV 1593 64644 2.1e-011 6.9e-007 # GCG CGC 685 26345 9.4e-008 3.2e-003 # CCG CGG 612 24081 7.7e-006 2.6e-001 # TCG CGA 612 24608 7.5e-005 2.5e+000 letter-probability matrix: alength= 4 w= 3 nsites= 2156 E= 6.9e-007 0.000000 0.311688 0.378479 0.309833 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TMATCAR DREME-9 # Word RC Word Pos Neg P-value E-value # BEST TMATCAR YTGATKA 302 9569 7.8e-011 2.2e-006 # TCATCAG CTGATGA 121 3624 3.4e-006 9.4e-002 # TAATCAG CTGATTA 72 2240 7.9e-004 2.2e+001 # TCATCAA TTGATGA 71 2348 3.6e-003 1.0e+002 # TAATCAA TTGATTA 49 1570 8.1e-003 2.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 315 E= 2.2e-006 0.000000 0.000000 0.000000 1.000000 0.387302 0.612698 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.384127 0.000000 0.615873 0.000000 MOTIF CAGCTGB DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CAGCTGB VCAGCTG 515 18185 1.7e-010 4.7e-006 # CAGCTGT ACAGCTG 280 9297 2.6e-008 7.1e-004 # CAGCTGG CCAGCTG 243 8348 2.4e-006 6.7e-002 # CAGCTGC GCAGCTG 258 9155 1.1e-005 3.1e-001 letter-probability matrix: alength= 4 w= 7 nsites= 547 E= 4.7e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.340037 0.294333 0.365631 MOTIF ACCTG DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ACCTG CAGGT 385 13019 4.3e-010 1.2e-005 # ACCTG CAGGT 385 13019 4.3e-010 1.2e-005 letter-probability matrix: alength= 4 w= 5 nsites= 410 E= 1.2e-005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAAWTCA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CAAWTCA TGAWTTG 185 5642 3.4e-008 9.3e-004 # CAAATCA TGATTTG 113 3252 1.3e-006 3.5e-002 # CAATTCA TGAATTG 73 2439 4.0e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 188 E= 9.3e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.611702 0.000000 0.000000 0.388298 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTTTSA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CTTTSA TSAAAG 632 24327 3.7e-007 1.0e-002 # CTTTCA TGAAAG 374 14296 6.7e-005 1.8e+000 # CTTTGA TCAAAG 287 11088 8.5e-004 2.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 688 E= 1.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.575581 0.424419 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 8013.63 seconds