| Alignment |
|
| Replicate 1 |
|
| Tag-align | /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/MonocyteCrawfordFemaleUnknown/align/rep1/ENCFF000TBL_trimmed.nodup.tagAlign.gz
|
| Replicate 2 |
|
| Tag-align | /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/MonocyteCrawfordFemaleUnknown/align/rep2/ENCFF000TBP_trimmed.nodup.tagAlign.gz
|
| Replicate 3 |
|
| Tag-align | /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/MonocyteStamFemale34/align/rep1/ENCFF231SIM.nodup.tagAlign.gz
|
| Replicate 4 |
|
| Tag-align | /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/MonocyteStamFemaleUnknown/align/rep1/MonocyteStamFemaleUnknown.nodup.tagAlign.gz
|
| Replicate 5 |
|
| Tag-align | /projects/pfenninggroup/machineLearningForComputationalBiology/regElEvoGrant/HumanDNase/MonocyteStamMale37/align/rep1/ENCFF690LNW.nodup.tagAlign.gz
|
| Pooled replicate |
|
| Tag-align | ./align/pooled_rep/ENCFF000TBL_trimmed.nodup_pooled.tagAlign.gz
|
| Pseudo-replicates |
|
| Replicate 1 |
|
| Pseudo-replicate 1 |
|
| Tag-align | ./align/pseudo_reps/rep1/pr1/ENCFF000TBL_trimmed.nodup.pr1.tagAlign.gz
|
| Pseudo-replicate 2 |
|
| Tag-align | ./align/pseudo_reps/rep1/pr2/ENCFF000TBL_trimmed.nodup.pr2.tagAlign.gz
|
| Replicate 2 |
|
| Pseudo-replicate 1 |
|
| Tag-align | ./align/pseudo_reps/rep2/pr1/ENCFF000TBP_trimmed.nodup.pr1.tagAlign.gz
|
| Pseudo-replicate 2 |
|
| Tag-align | ./align/pseudo_reps/rep2/pr2/ENCFF000TBP_trimmed.nodup.pr2.tagAlign.gz
|
| Replicate 3 |
|
| Pseudo-replicate 1 |
|
| Tag-align | ./align/pseudo_reps/rep3/pr1/ENCFF231SIM.nodup.pr1.tagAlign.gz
|
| Pseudo-replicate 2 |
|
| Tag-align | ./align/pseudo_reps/rep3/pr2/ENCFF231SIM.nodup.pr2.tagAlign.gz
|
| Replicate 4 |
|
| Pseudo-replicate 1 |
|
| Tag-align | ./align/pseudo_reps/rep4/pr1/MonocyteStamFemaleUnknown.nodup.pr1.tagAlign.gz
|
| Pseudo-replicate 2 |
|
| Tag-align | ./align/pseudo_reps/rep4/pr2/MonocyteStamFemaleUnknown.nodup.pr2.tagAlign.gz
|
| Replicate 5 |
|
| Pseudo-replicate 1 |
|
| Tag-align | ./align/pseudo_reps/rep5/pr1/ENCFF690LNW.nodup.pr1.tagAlign.gz
|
| Pseudo-replicate 2 |
|
| Tag-align | ./align/pseudo_reps/rep5/pr2/ENCFF690LNW.nodup.pr2.tagAlign.gz
|
| Pooled pseudo-replicates |
|
| Pooled pseudo-replicate 1 |
|
| Tag-align | ./align/pooled_pseudo_reps/ppr1/ENCFF000TBL_trimmed.nodup.pr1_pooled.tagAlign.gz
|
| Pooled pseudo-replicate 2 |
|
| Tag-align | ./align/pooled_pseudo_reps/ppr2/ENCFF000TBL_trimmed.nodup.pr2_pooled.tagAlign.gz
|
| Signal tracks |
|
| MACS2 |
|
| Replicate 1 |
|
| P-value | ./signal/macs2/rep1/ENCFF000TBL_trimmed.nodup.pf.pval.signal.bigwig
|
| Fold enrichment | ./signal/macs2/rep1/ENCFF000TBL_trimmed.nodup.pf.fc.signal.bigwig
|
| Replicate 2 |
|
| P-value | ./signal/macs2/rep2/ENCFF000TBP_trimmed.nodup.pf.pval.signal.bigwig
|
| Fold enrichment | ./signal/macs2/rep2/ENCFF000TBP_trimmed.nodup.pf.fc.signal.bigwig
|
| Replicate 3 |
|
| P-value | ./signal/macs2/rep3/ENCFF231SIM.nodup.pf.pval.signal.bigwig
|
| Fold enrichment | ./signal/macs2/rep3/ENCFF231SIM.nodup.pf.fc.signal.bigwig
|
| Replicate 4 |
|
| P-value | ./signal/macs2/rep4/MonocyteStamFemaleUnknown.nodup.pf.pval.signal.bigwig
|
| Fold enrichment | ./signal/macs2/rep4/MonocyteStamFemaleUnknown.nodup.pf.fc.signal.bigwig
|
| Replicate 5 |
|
| P-value | ./signal/macs2/rep5/ENCFF690LNW.nodup.pf.pval.signal.bigwig
|
| Fold enrichment | ./signal/macs2/rep5/ENCFF690LNW.nodup.pf.fc.signal.bigwig
|
| Pooled replicate |
|
| P-value | ./signal/macs2/pooled_rep/ENCFF000TBL_trimmed.nodup_pooled.pf.pval.signal.bigwig
|
| Fold enrichment | ./signal/macs2/pooled_rep/ENCFF000TBL_trimmed.nodup_pooled.pf.fc.signal.bigwig
|
| Peaks |
|
| MACS2 |
|
| Replicate 1 |
|
| Narrow peak (p-val thresh=0.01) | ./peak/macs2/rep1/ENCFF000TBL_trimmed.nodup.pf.pval0.01.300K.narrowPeak.gz
|
| Replicate 2 |
|
| Narrow peak (p-val thresh=0.01) | ./peak/macs2/rep2/ENCFF000TBP_trimmed.nodup.pf.pval0.01.300K.narrowPeak.gz
|
| Replicate 3 |
|
| Narrow peak (p-val thresh=0.01) | ./peak/macs2/rep3/ENCFF231SIM.nodup.pf.pval0.01.300K.narrowPeak.gz
|
| Replicate 4 |
|
| Narrow peak (p-val thresh=0.01) | ./peak/macs2/rep4/MonocyteStamFemaleUnknown.nodup.pf.pval0.01.300K.narrowPeak.gz
|
| Replicate 5 |
|
| Narrow peak (p-val thresh=0.01) | ./peak/macs2/rep5/ENCFF690LNW.nodup.pf.pval0.01.300K.narrowPeak.gz
|
| Pooled replicate |
|
| Narrow peak (p-val thresh=.01) | ./peak/macs2/pooled_rep/ENCFF000TBL_trimmed.nodup_pooled.pf.pval0.01.300K.narrowPeak.gz
|
| Pseudo-replicates |
|
| Replicate 1 |
|
| Pseudo-replicate 1 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep1/pr1/ENCFF000TBL_trimmed.nodup.pr1.pf.pval0.01.300K.narrowPeak.gz
|
| Pseudo-replicate 2 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep1/pr2/ENCFF000TBL_trimmed.nodup.pr2.pf.pval0.01.300K.narrowPeak.gz
|
| Replicate 2 |
|
| Pseudo-replicate 1 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep2/pr1/ENCFF000TBP_trimmed.nodup.pr1.pf.pval0.01.300K.narrowPeak.gz
|
| Pseudo-replicate 2 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep2/pr2/ENCFF000TBP_trimmed.nodup.pr2.pf.pval0.01.300K.narrowPeak.gz
|
| Replicate 3 |
|
| Pseudo-replicate 1 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep3/pr1/ENCFF231SIM.nodup.pr1.pf.pval0.01.300K.narrowPeak.gz
|
| Pseudo-replicate 2 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep3/pr2/ENCFF231SIM.nodup.pr2.pf.pval0.01.300K.narrowPeak.gz
|
| Replicate 4 |
|
| Pseudo-replicate 1 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep4/pr1/MonocyteStamFemaleUnknown.nodup.pr1.pf.pval0.01.300K.narrowPeak.gz
|
| Pseudo-replicate 2 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep4/pr2/MonocyteStamFemaleUnknown.nodup.pr2.pf.pval0.01.300K.narrowPeak.gz
|
| Replicate 5 |
|
| Pseudo-replicate 1 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep5/pr1/ENCFF690LNW.nodup.pr1.pf.pval0.01.300K.narrowPeak.gz
|
| Pseudo-replicate 2 |
|
| Narrow peak | ./peak/macs2/pseudo_reps/rep5/pr2/ENCFF690LNW.nodup.pr2.pf.pval0.01.300K.narrowPeak.gz
|
| Pooled pseudo-replicates |
|
| Pooled pseudo-replicate 1 |
|
| Narrow peak | ./peak/macs2/pooled_pseudo_reps/ppr1/ENCFF000TBL_trimmed.nodup.pr1_pooled.pf.pval0.01.300K.narrowPeak.gz
|
| Pooled pseudo-replicate 2 |
|
| Narrow peak | ./peak/macs2/pooled_pseudo_reps/ppr2/ENCFF000TBL_trimmed.nodup.pr2_pooled.pf.pval0.01.300K.narrowPeak.gz
|
| Naive overlap |
|
| True replicates |
|
| Rep. 1 vs. Rep. 2 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep1-rep2/humanMonocyteDHS_rep1-rep2.naive_overlap.filt.narrowPeak.gz
|
| Rep. 1 vs. Rep. 3 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep1-rep3/humanMonocyteDHS_rep1-rep3.naive_overlap.filt.narrowPeak.gz
|
| Rep. 1 vs. Rep. 4 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep1-rep4/humanMonocyteDHS_rep1-rep4.naive_overlap.filt.narrowPeak.gz
|
| Rep. 1 vs. Rep. 5 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep1-rep5/humanMonocyteDHS_rep1-rep5.naive_overlap.filt.narrowPeak.gz
|
| Rep. 2 vs. Rep. 3 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep2-rep3/humanMonocyteDHS_rep2-rep3.naive_overlap.filt.narrowPeak.gz
|
| Rep. 2 vs. Rep. 4 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep2-rep4/humanMonocyteDHS_rep2-rep4.naive_overlap.filt.narrowPeak.gz
|
| Rep. 2 vs. Rep. 5 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep2-rep5/humanMonocyteDHS_rep2-rep5.naive_overlap.filt.narrowPeak.gz
|
| Rep. 3 vs. Rep. 4 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep3-rep4/humanMonocyteDHS_rep3-rep4.naive_overlap.filt.narrowPeak.gz
|
| Rep. 3 vs. Rep. 5 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep3-rep5/humanMonocyteDHS_rep3-rep5.naive_overlap.filt.narrowPeak.gz
|
| Rep. 4 vs. Rep. 5 |
|
| Narrow peak | ./peak/macs2/overlap/true_reps/rep4-rep5/humanMonocyteDHS_rep4-rep5.naive_overlap.filt.narrowPeak.gz
|
| Pseudo-replicates |
|
| Replicate 1 |
|
| Narrow peak | ./peak/macs2/overlap/pseudo_reps/rep1/humanMonocyteDHS_rep1-pr.naive_overlap.filt.narrowPeak.gz
|
| Replicate 2 |
|
| Narrow peak | ./peak/macs2/overlap/pseudo_reps/rep2/humanMonocyteDHS_rep2-pr.naive_overlap.filt.narrowPeak.gz
|
| Replicate 3 |
|
| Narrow peak | ./peak/macs2/overlap/pseudo_reps/rep3/humanMonocyteDHS_rep3-pr.naive_overlap.filt.narrowPeak.gz
|
| Replicate 4 |
|
| Narrow peak | ./peak/macs2/overlap/pseudo_reps/rep4/humanMonocyteDHS_rep4-pr.naive_overlap.filt.narrowPeak.gz
|
| Replicate 5 |
|
| Narrow peak | ./peak/macs2/overlap/pseudo_reps/rep5/humanMonocyteDHS_rep5-pr.naive_overlap.filt.narrowPeak.gz
|
| Pooled pseudo-replicates |
|
| Narrow peak | ./peak/macs2/overlap/pooled_pseudo_reps/humanMonocyteDHS_ppr.naive_overlap.filt.narrowPeak.gz
|
| Optimal set |
|
| Overlapping peak | ./peak/macs2/overlap/optimal_set/humanMonocyteDHS_ppr.naive_overlap.filt.narrowPeak.gz
|
| Conservative set |
|
| Overlapping peak | ./peak/macs2/overlap/conservative_set/humanMonocyteDHS_rep1-rep2.naive_overlap.filt.narrowPeak.gz
|
| IDR |
|
| True replicates |
|
| Rep. 1 vs. Rep. 2 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep1-rep2/humanMonocyteDHS_rep1-rep2.IDR0.1.filt.narrowPeak.gz
|
| Rep. 1 vs. Rep. 3 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep1-rep3/humanMonocyteDHS_rep1-rep3.IDR0.1.filt.narrowPeak.gz
|
| Rep. 1 vs. Rep. 4 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep1-rep4/humanMonocyteDHS_rep1-rep4.IDR0.1.filt.narrowPeak.gz
|
| Rep. 1 vs. Rep. 5 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep1-rep5/humanMonocyteDHS_rep1-rep5.IDR0.1.filt.narrowPeak.gz
|
| Rep. 2 vs. Rep. 3 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep2-rep3/humanMonocyteDHS_rep2-rep3.IDR0.1.filt.narrowPeak.gz
|
| Rep. 2 vs. Rep. 4 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep2-rep4/humanMonocyteDHS_rep2-rep4.IDR0.1.filt.narrowPeak.gz
|
| Rep. 2 vs. Rep. 5 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep2-rep5/humanMonocyteDHS_rep2-rep5.IDR0.1.filt.narrowPeak.gz
|
| Rep. 3 vs. Rep. 4 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep3-rep4/humanMonocyteDHS_rep3-rep4.IDR0.1.filt.narrowPeak.gz
|
| Rep. 3 vs. Rep. 5 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep3-rep5/humanMonocyteDHS_rep3-rep5.IDR0.1.filt.narrowPeak.gz
|
| Rep. 4 vs. Rep. 5 |
|
| IDR peak | ./peak/macs2/idr/true_reps/rep4-rep5/humanMonocyteDHS_rep4-rep5.IDR0.1.filt.narrowPeak.gz
|
| Pseudo-replicates |
|
| Replicate 1 |
|
| IDR peak | ./peak/macs2/idr/pseudo_reps/rep1/humanMonocyteDHS_rep1-pr.IDR0.1.filt.narrowPeak.gz
|
| Replicate 2 |
|
| IDR peak | ./peak/macs2/idr/pseudo_reps/rep2/humanMonocyteDHS_rep2-pr.IDR0.1.filt.narrowPeak.gz
|
| Replicate 3 |
|
| IDR peak | ./peak/macs2/idr/pseudo_reps/rep3/humanMonocyteDHS_rep3-pr.IDR0.1.filt.narrowPeak.gz
|
| Replicate 4 |
|
| IDR peak | ./peak/macs2/idr/pseudo_reps/rep4/humanMonocyteDHS_rep4-pr.IDR0.1.filt.narrowPeak.gz
|
| Replicate 5 |
|
| IDR peak | ./peak/macs2/idr/pseudo_reps/rep5/humanMonocyteDHS_rep5-pr.IDR0.1.filt.narrowPeak.gz
|
| Pooled pseudo-replicates |
|
| IDR peak | ./peak/macs2/idr/pooled_pseudo_reps/humanMonocyteDHS_ppr.IDR0.1.filt.narrowPeak.gz
|
| Optimal set |
|
| IDR peak | ./peak/macs2/idr/optimal_set/humanMonocyteDHS_ppr.IDR0.1.filt.narrowPeak.gz
|
| Conservative set |
|
| IDR peak | ./peak/macs2/idr/conservative_set/humanMonocyteDHS_rep1-rep4.IDR0.1.filt.narrowPeak.gz
|
| QC and logs |
|
| Replicate 1 |
|
| Cross-corr. plot | ./qc/rep1/ENCFF000TBL_trimmed.nodup.no_chrM.25M.cc.plot.pdf
|
| Replicate 2 |
|
| Cross-corr. plot | ./qc/rep2/ENCFF000TBP_trimmed.nodup.no_chrM.25M.cc.plot.pdf
|
| Replicate 3 |
|
| Cross-corr. plot | ./qc/rep3/ENCFF231SIM.nodup.no_chrM.25M.cc.plot.pdf
|
| Replicate 4 |
|
| Cross-corr. plot | ./qc/rep4/MonocyteStamFemaleUnknown.nodup.no_chrM.25M.cc.plot.pdf
|
| Replicate 5 |
|
| Cross-corr. plot | ./qc/rep5/ENCFF690LNW.nodup.no_chrM.25M.cc.plot.pdf
|
| Naive overlap |
|
| Naive overlap QC log | ./qc/humanMonocyteDHS_peak_overlap_final.qc
|
| True replicates |
|
| Rep. 1 vs. Rep. 2 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep1-rep2/humanMonocyteDHS_rep1-rep2.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 1 vs. Rep. 3 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep1-rep3/humanMonocyteDHS_rep1-rep3.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 1 vs. Rep. 4 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep1-rep4/humanMonocyteDHS_rep1-rep4.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 1 vs. Rep. 5 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep1-rep5/humanMonocyteDHS_rep1-rep5.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 2 vs. Rep. 3 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep2-rep3/humanMonocyteDHS_rep2-rep3.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 2 vs. Rep. 4 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep2-rep4/humanMonocyteDHS_rep2-rep4.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 2 vs. Rep. 5 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep2-rep5/humanMonocyteDHS_rep2-rep5.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 3 vs. Rep. 4 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep3-rep4/humanMonocyteDHS_rep3-rep4.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 3 vs. Rep. 5 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep3-rep5/humanMonocyteDHS_rep3-rep5.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Rep. 4 vs. Rep. 5 |
|
| FRiP | ./peak/macs2/overlap/true_reps/rep4-rep5/humanMonocyteDHS_rep4-rep5.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Pseudo-replicates |
|
| Replicate 1 |
|
| FRiP | ./peak/macs2/overlap/pseudo_reps/rep1/humanMonocyteDHS_rep1-pr.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Replicate 2 |
|
| FRiP | ./peak/macs2/overlap/pseudo_reps/rep2/humanMonocyteDHS_rep2-pr.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Replicate 3 |
|
| FRiP | ./peak/macs2/overlap/pseudo_reps/rep3/humanMonocyteDHS_rep3-pr.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Replicate 4 |
|
| FRiP | ./peak/macs2/overlap/pseudo_reps/rep4/humanMonocyteDHS_rep4-pr.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Replicate 5 |
|
| FRiP | ./peak/macs2/overlap/pseudo_reps/rep5/humanMonocyteDHS_rep5-pr.naive_overlap.filt.narrowPeak.FRiP.qc
|
| Pooled pseudo-replicates |
|
| FRiP | ./peak/macs2/overlap/pooled_pseudo_reps/humanMonocyteDHS_ppr.naive_overlap.filt.narrowPeak.FRiP.qc
|
| IDR |
|
| IDR QC log | ./qc/humanMonocyteDHS_IDR_final.qc
|
| True replicates |
|
| Rep. 1 vs. Rep. 2 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep1-rep2/humanMonocyteDHS_rep1-rep2.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep1-rep2/humanMonocyteDHS_rep1-rep2.unthresholded-peaks.txt.png
|
| Rep. 1 vs. Rep. 3 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep1-rep3/humanMonocyteDHS_rep1-rep3.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep1-rep3/humanMonocyteDHS_rep1-rep3.unthresholded-peaks.txt.png
|
| Rep. 1 vs. Rep. 4 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep1-rep4/humanMonocyteDHS_rep1-rep4.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep1-rep4/humanMonocyteDHS_rep1-rep4.unthresholded-peaks.txt.png
|
| Rep. 1 vs. Rep. 5 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep1-rep5/humanMonocyteDHS_rep1-rep5.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep1-rep5/humanMonocyteDHS_rep1-rep5.unthresholded-peaks.txt.png
|
| Rep. 2 vs. Rep. 3 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep2-rep3/humanMonocyteDHS_rep2-rep3.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep2-rep3/humanMonocyteDHS_rep2-rep3.unthresholded-peaks.txt.png
|
| Rep. 2 vs. Rep. 4 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep2-rep4/humanMonocyteDHS_rep2-rep4.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep2-rep4/humanMonocyteDHS_rep2-rep4.unthresholded-peaks.txt.png
|
| Rep. 2 vs. Rep. 5 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep2-rep5/humanMonocyteDHS_rep2-rep5.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep2-rep5/humanMonocyteDHS_rep2-rep5.unthresholded-peaks.txt.png
|
| Rep. 3 vs. Rep. 4 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep3-rep4/humanMonocyteDHS_rep3-rep4.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep3-rep4/humanMonocyteDHS_rep3-rep4.unthresholded-peaks.txt.png
|
| Rep. 3 vs. Rep. 5 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep3-rep5/humanMonocyteDHS_rep3-rep5.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep3-rep5/humanMonocyteDHS_rep3-rep5.unthresholded-peaks.txt.png
|
| Rep. 4 vs. Rep. 5 |
|
| FRiP | ./peak/macs2/idr/true_reps/rep4-rep5/humanMonocyteDHS_rep4-rep5.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/true_reps/rep4-rep5/humanMonocyteDHS_rep4-rep5.unthresholded-peaks.txt.png
|
| Pseudo-replicates |
|
| Replicate 1 |
|
| FRiP | ./peak/macs2/idr/pseudo_reps/rep1/humanMonocyteDHS_rep1-pr.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/pseudo_reps/rep1/humanMonocyteDHS_rep1-pr.unthresholded-peaks.txt.png
|
| Replicate 2 |
|
| FRiP | ./peak/macs2/idr/pseudo_reps/rep2/humanMonocyteDHS_rep2-pr.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/pseudo_reps/rep2/humanMonocyteDHS_rep2-pr.unthresholded-peaks.txt.png
|
| Replicate 3 |
|
| FRiP | ./peak/macs2/idr/pseudo_reps/rep3/humanMonocyteDHS_rep3-pr.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/pseudo_reps/rep3/humanMonocyteDHS_rep3-pr.unthresholded-peaks.txt.png
|
| Replicate 4 |
|
| FRiP | ./peak/macs2/idr/pseudo_reps/rep4/humanMonocyteDHS_rep4-pr.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/pseudo_reps/rep4/humanMonocyteDHS_rep4-pr.unthresholded-peaks.txt.png
|
| Replicate 5 |
|
| FRiP | ./peak/macs2/idr/pseudo_reps/rep5/humanMonocyteDHS_rep5-pr.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/pseudo_reps/rep5/humanMonocyteDHS_rep5-pr.unthresholded-peaks.txt.png
|
| Pooled pseudo-replicates |
|
| FRiP | ./peak/macs2/idr/pooled_pseudo_reps/humanMonocyteDHS_ppr.IDR0.1.filt.narrowPeak.FRiP.qc
|
| IDR plot | ./peak/macs2/idr/pooled_pseudo_reps/humanMonocyteDHS_ppr.unthresholded-peaks.txt.png
|
