Information for 18-TGTAAATTTCAA (Motif 19)

G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
Reverse Opposite:
C G A T C G A T T A C G G C T A G T C A C G T A A C G T C G A T G A C T G T C A A G T C C G T A
p-value:1e-12
log p-value:-2.929e+01
Information Content per bp:1.687
Number of Target Sequences with motif398.0
Percentage of Target Sequences with motif20.29%
Number of Background Sequences with motif5760.7
Percentage of Background Sequences with motif14.24%
Average Position of motif in Targets2943.4 +/- 2757.5bp
Average Position of motif in Background2466.7 +/- 2070.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXB1/MA0845.1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGTAAATTTCAA
TATGTAAATAT---
 A C G T A C G T G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGTAAATTTCAA
ATTATGCTAATTT---
 A C G T A C G T A C G T A C G T G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGTAAATTTCAA
TTATGCAAATTA---
 A C G T A C G T A C G T G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGTAAATTTCAA-
---CGGTTTCAAA
 G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A A C G T
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGTAAATTTCAA
ANGNAAAGGTCA-
 A C G T G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TGTAAATTTCAA
TTATGCAAATTA---
 A C G T A C G T A C G T G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGTAAATTTCAA
ATGCATAATTCA-
 A C G T G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGTAAATTTCAA
AATATGCAAATT----
 A C G T A C G T A C G T A C G T G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGTAAATTTCAA-
----NATTCAAAT
 G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A A C G T
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGTAAATTTCAA
TATGCAAAT-----
 A C G T A C G T G C A T T C A G C A G T C T G A G C T A T G C A G C A T C A G T C G A T A T G C G C T A G C T A
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T