Information for 15-ATTTTAATGCAA (Motif 16)

G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A
Reverse Opposite:
G A C T C G A T A C T G G T A C G C T A C G A T C G A T C G T A C T G A G T C A G C T A C G A T
p-value:1e-14
log p-value:-3.264e+01
Information Content per bp:1.699
Number of Target Sequences with motif569.0
Percentage of Target Sequences with motif29.00%
Number of Background Sequences with motif8725.0
Percentage of Background Sequences with motif21.56%
Average Position of motif in Targets2874.1 +/- 3105.7bp
Average Position of motif in Background2448.5 +/- 2053.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-ATTTTAATGCAA--
CATTGTTATGCAAAT
 A C G T G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ATTTTAATGCAA-
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:ATTTTAATGCAA---
ANATTTTTGCAANTN
 G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ATTTTAATGCAA--
CTTTGTTATGCAAAT
 A C G T G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:ATTTTAATGCAA
--TTTAAT----
 G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A
A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ATTTTAATGCAA-
NNANTTTTATTGGNNN
 A C G T A C G T A C G T G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PB0079.1_Sry_1/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ATTTTAATGCAA
NANTATTATAATTNNN
 A C G T A C G T A C G T A C G T G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATTTTAATGCAA
TTTTTATTGC--
 G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATTTTAATGCAA
NTTTTATGAC--
 G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATTTTAATGCAA
ATATTAATTAA-
 G C T A C G A T C A G T G A C T G C A T G C T A G C T A C G A T C A T G T G A C G C T A C T G A
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T