Information for 9-AACTATTTAAAG (Motif 11)

C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G
Reverse Opposite:
G A T C G C A T A G C T C G A T C T G A T G C A C G T A A G C T C T G A A T C G C G A T G C A T
p-value:1e-16
log p-value:-3.899e+01
Information Content per bp:1.701
Number of Target Sequences with motif580.0
Percentage of Target Sequences with motif29.56%
Number of Background Sequences with motif8649.1
Percentage of Background Sequences with motif21.38%
Average Position of motif in Targets3165.8 +/- 3338.7bp
Average Position of motif in Background2477.1 +/- 2072.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0028.1_En1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AACTATTTAAAG-
GCGAACTAATTAATGC
 A C G T A C G T A C G T C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

PH0108.1_Msx3/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AACTATTTAAAG-
CAAAACCAATTAATTT
 A C G T A C G T A C G T C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AACTATTTAAAG
---NATTCAAAT
 C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AACTATTTAAAG
--CTATTTTTGG
 C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G
A C G T A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G

PH0005.1_Barhl1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AACTATTTAAAG-
AACAACCAATTAATTC
 A C G T A C G T A C G T C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PH0117.1_Nkx3-1/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AACTATTTAAAG-
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C G T C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0173.1_Uncx/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AACTATTTAAAG--
CATAATTAATTAACGCG
 A C G T A C G T A C G T C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G A C G T A C G T
T G A C C T G A G C A T C T G A T G C A A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G T C T A C G T A G C A C T G

PH0112.1_Nkx2-3/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----AACTATTTAAAG
CNTTAAGTACTTAANG
 A C G T A C G T A C G T A C G T C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PH0011.1_Alx1_2/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AACTATTTAAAG--
NNNAATTAATTAANGNG
 A C G T A C G T A C G T C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G A C G T A C G T
A C T G G A T C G A T C T C G A T C G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A G A C T C A T G A G T C T C A G

PH0093.1_Lhx3/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AACTATTTAAAG---
GAAATTAATTAAATAAT
 A C G T A C G T C G T A G C T A T A G C G A C T T C G A G C A T A C G T G A C T G C T A C T G A C G T A C T A G A C G T A C G T A C G T
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T