Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1734)	% of Background Sequences with Motif
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-145	-3.345e+02	0.0000	1812.0	92.35%	1186.2	68.41%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-136	-3.142e+02	0.0000	1628.0	82.98%	981.5	56.60%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-134	-3.086e+02	0.0000	1725.0	87.92%	1096.2	63.21%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-133	-3.066e+02	0.0000	1783.0	90.88%	1170.5	67.50%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-132	-3.060e+02	0.0000	1651.0	84.15%	1013.2	58.43%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-132	-3.045e+02	0.0000	1600.0	81.55%	959.5	55.33%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-132	-3.042e+02	0.0000	1596.0	81.35%	955.6	55.11%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-125	-2.893e+02	0.0000	1778.0	90.62%	1178.6	67.97%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-125	-2.887e+02	0.0000	1025.0	52.24%	464.5	26.79%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-124	-2.869e+02	0.0000	1489.0	75.89%	861.9	49.70%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-123	-2.854e+02	0.0000	1443.0	73.55%	818.5	47.20%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-122	-2.828e+02	0.0000	1678.0	85.52%	1063.5	61.33%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-120	-2.784e+02	0.0000	1542.0	78.59%	921.6	53.15%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-120	-2.767e+02	0.0000	1565.0	79.77%	946.7	54.59%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-119	-2.746e+02	0.0000	1802.0	91.85%	1222.1	70.47%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-119	-2.746e+02	0.0000	1384.0	70.54%	772.3	44.54%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-118	-2.724e+02	0.0000	1571.0	80.07%	956.7	55.17%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-117	-2.713e+02	0.0000	1822.0	92.86%	1252.1	72.20%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-117	-2.703e+02	0.0000	1817.0	92.61%	1246.4	71.88%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-117	-2.701e+02	0.0000	1525.0	77.73%	911.7	52.58%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-117	-2.699e+02	0.0000	1714.0	87.36%	1116.3	64.38%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-116	-2.687e+02	0.0000	1668.0	85.02%	1064.5	61.39%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-116	-2.677e+02	0.0000	1872.0	95.41%	1328.0	76.59%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-115	-2.660e+02	0.0000	1307.0	66.62%	710.8	40.99%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-114	-2.632e+02	0.0000	1620.0	82.57%	1016.4	58.61%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-114	-2.627e+02	0.0000	1341.0	68.35%	743.0	42.85%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-113	-2.624e+02	0.0000	1624.0	82.77%	1021.6	58.91%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-113	-2.619e+02	0.0000	1832.0	93.37%	1274.4	73.49%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-113	-2.612e+02	0.0000	1538.0	78.39%	932.1	53.75%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-112	-2.579e+02	0.0000	1595.0	81.29%	994.4	57.34%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-111	-2.578e+02	0.0000	1644.0	83.79%	1047.2	60.39%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-111	-2.576e+02	0.0000	1744.0	88.89%	1163.9	67.12%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-111	-2.568e+02	0.0000	1815.0	92.51%	1255.1	72.38%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-111	-2.566e+02	0.0000	1720.0	87.67%	1135.2	65.46%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-111	-2.558e+02	0.0000	1487.0	75.79%	886.3	51.11%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-110	-2.551e+02	0.0000	1891.0	96.38%	1369.4	78.97%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-110	-2.545e+02	0.0000	1455.0	74.16%	856.7	49.40%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-110	-2.543e+02	0.0000	1620.0	82.57%	1024.8	59.10%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-110	-2.541e+02	0.0000	1391.0	70.90%	796.4	45.93%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-110	-2.536e+02	0.0000	1788.0	91.13%	1222.9	70.52%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-110	-2.534e+02	0.0000	1794.0	91.44%	1230.1	70.94%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-109	-2.516e+02	0.0000	1789.0	91.18%	1225.2	70.66%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-108	-2.499e+02	0.0000	1417.0	72.22%	824.1	47.52%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-108	-2.499e+02	0.0000	1642.0	83.69%	1052.2	60.68%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-108	-2.497e+02	0.0000	1343.0	68.45%	756.7	43.64%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-108	-2.491e+02	0.0000	1383.0	70.49%	793.7	45.77%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-107	-2.471e+02	0.0000	1759.0	89.65%	1191.3	68.70%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-106	-2.441e+02	0.0000	1866.0	95.11%	1339.3	77.24%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-105	-2.435e+02	0.0000	1804.0	91.95%	1252.0	72.20%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-105	-2.432e+02	0.0000	1761.0	89.76%	1197.2	69.04%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-105	-2.420e+02	0.0000	1341.0	68.35%	761.0	43.89%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-104	-2.410e+02	0.0000	1815.0	92.51%	1269.0	73.18%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-104	-2.409e+02	0.0000	1464.0	74.62%	877.4	50.60%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-104	-2.402e+02	0.0000	1530.0	77.98%	943.5	54.41%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-104	-2.401e+02	0.0000	1749.0	89.14%	1185.2	68.35%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-104	-2.399e+02	0.0000	1757.0	89.55%	1195.6	68.95%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-103	-2.390e+02	0.0000	1414.0	72.07%	831.8	47.97%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-103	-2.387e+02	0.0000	1311.0	66.82%	737.9	42.56%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-103	-2.377e+02	0.0000	1765.0	89.96%	1207.7	69.65%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-103	-2.375e+02	0.0000	1469.0	74.87%	885.1	51.04%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-103	-2.373e+02	0.0000	1445.0	73.65%	862.4	49.73%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-102	-2.349e+02	0.0000	1862.0	94.90%	1341.4	77.36%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-101	-2.342e+02	0.0000	1783.0	90.88%	1233.4	71.13%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-101	-2.339e+02	0.0000	1305.0	66.51%	736.5	42.47%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-101	-2.338e+02	0.0000	1356.0	69.11%	782.6	45.13%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-101	-2.337e+02	0.0000	1454.0	74.11%	874.0	50.40%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-101	-2.335e+02	0.0000	1844.0	93.99%	1316.4	75.92%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-101	-2.334e+02	0.0000	1829.0	93.22%	1295.4	74.71%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-101	-2.330e+02	0.0000	1786.0	91.03%	1238.8	71.44%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-100	-2.322e+02	0.0000	1673.0	85.27%	1103.0	63.61%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-100	-2.316e+02	0.0000	1567.0	79.87%	989.1	57.04%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-100	-2.314e+02	0.0000	1675.0	85.37%	1106.6	63.82%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-100	-2.313e+02	0.0000	1824.0	92.97%	1290.5	74.42%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-100	-2.306e+02	0.0000	1854.0	94.50%	1333.7	76.91%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-99	-2.301e+02	0.0000	1557.0	79.36%	980.8	56.56%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-99	-2.292e+02	0.0000	1602.0	81.65%	1028.2	59.29%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-99	-2.287e+02	0.0000	1311.0	66.82%	746.3	43.04%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-99	-2.285e+02	0.0000	1652.0	84.20%	1083.8	62.50%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-98	-2.277e+02	0.0000	1898.0	96.74%	1404.3	80.98%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-98	-2.274e+02	0.0000	1606.0	81.86%	1034.1	59.63%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-98	-2.266e+02	0.0000	1662.0	84.71%	1096.3	63.22%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-98	-2.263e+02	0.0000	1750.0	89.19%	1199.4	69.17%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-98	-2.257e+02	0.0000	1547.0	78.85%	974.9	56.22%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-97	-2.242e+02	0.0000	1191.0	60.70%	646.1	37.26%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-97	-2.238e+02	0.0000	1757.0	89.55%	1210.9	69.83%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-96	-2.230e+02	0.0000	1843.0	93.93%	1324.8	76.40%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-96	-2.230e+02	0.0000	1927.0	98.22%	1460.9	84.25%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-96	-2.227e+02	0.0000	1883.0	95.97%	1384.5	79.84%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-96	-2.217e+02	0.0000	1465.0	74.67%	896.4	51.69%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-96	-2.214e+02	0.0000	1797.0	91.59%	1263.1	72.84%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-96	-2.212e+02	0.0000	1570.0	80.02%	1002.4	57.81%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-96	-2.211e+02	0.0000	1589.0	80.99%	1022.3	58.95%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-95	-2.207e+02	0.0000	1463.0	74.57%	895.5	51.64%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-95	-2.203e+02	0.0000	1776.0	90.52%	1237.1	71.34%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-95	-2.200e+02	0.0000	1826.0	93.07%	1303.2	75.15%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-95	-2.197e+02	0.0000	1713.0	87.31%	1161.8	67.00%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-95	-2.197e+02	0.0000	1464.0	74.62%	897.8	51.77%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-95	-2.195e+02	0.0000	1439.0	73.34%	873.6	50.38%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-95	-2.193e+02	0.0000	1932.0	98.47%	1473.7	84.98%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-94	-2.186e+02	0.0000	1707.0	87.00%	1155.7	66.65%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-94	-2.183e+02	0.0000	1810.0	92.25%	1283.3	74.01%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-94	-2.181e+02	0.0000	1568.0	79.92%	1003.4	57.87%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-94	-2.169e+02	0.0000	1274.0	64.93%	724.5	41.78%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-94	-2.166e+02	0.0000	1077.0	54.89%	559.4	32.26%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-93	-2.160e+02	0.0000	1206.0	61.47%	666.4	38.43%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-93	-2.156e+02	0.0000	1461.0	74.46%	898.7	51.83%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-93	-2.155e+02	0.0000	1820.0	92.76%	1299.0	74.91%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-93	-2.147e+02	0.0000	1457.0	74.26%	895.8	51.66%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-93	-2.146e+02	0.0000	1730.0	88.18%	1186.3	68.41%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-93	-2.145e+02	0.0000	1637.0	83.44%	1080.5	62.31%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-92	-2.137e+02	0.0000	1812.0	92.35%	1290.7	74.43%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-92	-2.136e+02	0.0000	1839.0	93.73%	1327.7	76.57%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-92	-2.131e+02	0.0000	1915.0	97.60%	1446.1	83.39%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-92	-2.131e+02	0.0000	1822.0	92.86%	1304.0	75.20%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-92	-2.125e+02	0.0000	1413.0	72.02%	855.6	49.34%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-92	-2.119e+02	0.0000	1852.0	94.39%	1347.3	77.70%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-91	-2.117e+02	0.0000	1455.0	74.16%	896.1	51.68%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-91	-2.108e+02	0.0000	1510.0	76.96%	951.3	54.86%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-91	-2.108e+02	0.0000	1376.0	70.13%	822.3	47.42%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-91	-2.101e+02	0.0000	886.0	45.16%	418.6	24.14%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-91	-2.097e+02	0.0000	1391.0	70.90%	837.9	48.32%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-90	-2.089e+02	0.0000	1886.0	96.13%	1401.2	80.80%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-90	-2.087e+02	0.0000	1787.0	91.08%	1262.9	72.83%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-90	-2.083e+02	0.0000	1624.0	82.77%	1072.5	61.85%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-90	-2.079e+02	0.0000	1493.0	76.10%	937.1	54.04%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-90	-2.078e+02	0.0000	1879.0	95.77%	1391.9	80.27%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-90	-2.078e+02	0.0000	1075.0	54.79%	565.9	32.63%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-90	-2.076e+02	0.0000	1906.0	97.15%	1435.2	82.77%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-89	-2.056e+02	0.0000	1639.0	83.54%	1091.3	62.93%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-89	-2.052e+02	0.0000	1914.0	97.55%	1451.4	83.70%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-88	-2.041e+02	0.0000	1592.0	81.14%	1042.1	60.10%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-88	-2.038e+02	0.0000	1911.0	97.40%	1447.7	83.49%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-88	-2.037e+02	0.0000	1890.0	96.33%	1412.5	81.45%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-87	-2.021e+02	0.0000	1873.0	95.46%	1387.1	79.99%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-87	-2.020e+02	0.0000	1670.0	85.12%	1129.2	65.12%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-87	-2.019e+02	0.0000	1276.0	65.04%	740.0	42.68%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-87	-2.014e+02	0.0000	1379.0	70.29%	835.0	48.15%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-87	-2.006e+02	0.0000	1892.0	96.43%	1418.3	81.79%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-87	-2.003e+02	0.0000	1611.0	82.11%	1066.6	61.51%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-86	-1.996e+02	0.0000	1362.0	69.42%	820.5	47.32%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-86	-1.992e+02	0.0000	1368.0	69.72%	827.0	47.69%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-86	-1.991e+02	0.0000	1058.0	53.92%	559.9	32.29%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-86	-1.985e+02	0.0000	1317.0	67.13%	780.2	44.99%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-86	-1.982e+02	0.0000	1474.0	75.13%	928.8	53.56%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-86	-1.981e+02	0.0000	1479.0	75.38%	933.9	53.86%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-85	-1.969e+02	0.0000	1500.0	76.45%	955.3	55.09%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-85	-1.966e+02	0.0000	1922.0	97.96%	1473.9	85.00%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-85	-1.966e+02	0.0000	1458.0	74.31%	914.6	52.74%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-85	-1.965e+02	0.0000	1702.0	86.75%	1171.1	67.53%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-85	-1.964e+02	0.0000	1340.0	68.30%	803.8	46.35%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-85	-1.959e+02	0.0000	1105.0	56.32%	600.5	34.63%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-85	-1.958e+02	0.0000	1704.0	86.85%	1174.9	67.75%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-84	-1.957e+02	0.0000	1079.0	54.99%	579.4	33.41%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-84	-1.937e+02	0.0000	1276.0	65.04%	748.6	43.17%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-83	-1.929e+02	0.0000	1561.0	79.56%	1021.8	58.93%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-83	-1.920e+02	0.0000	1345.0	68.55%	812.4	46.85%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-83	-1.916e+02	0.0000	1597.0	81.40%	1060.3	61.15%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-83	-1.913e+02	0.0000	1440.0	73.39%	902.2	52.03%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-82	-1.906e+02	0.0000	1277.0	65.09%	752.6	43.40%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-82	-1.902e+02	0.0000	1343.0	68.45%	812.7	46.87%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-82	-1.897e+02	0.0000	1922.0	97.96%	1479.4	85.31%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-82	-1.896e+02	0.0000	1177.0	59.99%	666.3	38.42%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-81	-1.888e+02	0.0000	1218.0	62.08%	702.3	40.50%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-81	-1.870e+02	0.0000	1118.0	56.98%	619.9	35.75%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-81	-1.869e+02	0.0000	1858.0	94.70%	1379.9	79.58%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-80	-1.865e+02	0.0000	1480.0	75.43%	946.8	54.60%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-80	-1.849e+02	0.0000	1202.0	61.26%	692.5	39.94%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-80	-1.847e+02	0.0000	1435.0	73.14%	904.9	52.19%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-79	-1.835e+02	0.0000	834.0	42.51%	401.9	23.18%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-79	-1.831e+02	0.0000	1801.0	91.79%	1305.8	75.31%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-79	-1.827e+02	0.0000	1570.0	80.02%	1041.9	60.08%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-79	-1.827e+02	0.0000	1242.0	63.30%	729.2	42.05%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-79	-1.824e+02	0.0000	1236.0	63.00%	724.7	41.79%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-78	-1.816e+02	0.0000	1278.0	65.14%	762.8	43.99%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-78	-1.815e+02	0.0000	1943.0	99.03%	1528.3	88.13%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-78	-1.806e+02	0.0000	1497.0	76.30%	969.2	55.89%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-78	-1.801e+02	0.0000	752.0	38.33%	345.2	19.91%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-78	-1.797e+02	0.0000	1398.0	71.25%	874.4	50.42%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-77	-1.794e+02	0.0000	1555.0	79.26%	1029.0	59.34%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-77	-1.791e+02	0.0000	1153.0	58.77%	656.7	37.87%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-77	-1.783e+02	0.0000	1360.0	69.32%	840.7	48.48%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-77	-1.776e+02	0.0000	1669.0	85.07%	1153.5	66.52%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-76	-1.770e+02	0.0000	1857.0	94.65%	1387.3	80.00%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-76	-1.758e+02	0.0000	1741.0	88.74%	1238.8	71.44%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-75	-1.743e+02	0.0000	1394.0	71.05%	876.5	50.55%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-75	-1.736e+02	0.0000	1311.0	66.82%	800.2	46.14%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-75	-1.735e+02	0.0000	1952.0	99.49%	1556.3	89.75%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-75	-1.732e+02	0.0000	1881.0	95.87%	1427.0	82.29%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-74	-1.713e+02	0.0000	977.0	49.80%	520.1	30.00%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-74	-1.713e+02	0.0000	1085.0	55.30%	607.0	35.01%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-74	-1.712e+02	0.0000	886.0	45.16%	450.9	26.00%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-74	-1.709e+02	0.0000	1389.0	70.80%	875.2	50.47%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-73	-1.690e+02	0.0000	1807.0	92.10%	1327.1	76.53%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-73	-1.688e+02	0.0000	1254.0	63.91%	754.1	43.49%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-72	-1.679e+02	0.0000	707.0	36.03%	323.3	18.65%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-72	-1.677e+02	0.0000	1071.0	54.59%	599.5	34.57%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-72	-1.665e+02	0.0000	1232.0	62.79%	737.8	42.55%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-71	-1.651e+02	0.0000	1917.0	97.71%	1492.0	86.04%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-71	-1.645e+02	0.0000	1278.0	65.14%	780.1	44.99%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-71	-1.642e+02	0.0000	1182.0	60.24%	696.7	40.18%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-71	-1.638e+02	0.0000	1223.0	62.33%	732.8	42.26%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-71	-1.637e+02	0.0000	860.0	43.83%	437.0	25.20%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-71	-1.636e+02	0.0000	969.0	49.39%	521.4	30.07%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-70	-1.632e+02	0.0000	1898.0	96.74%	1462.1	84.32%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-70	-1.625e+02	0.0000	1270.0	64.73%	775.1	44.70%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-70	-1.624e+02	0.0000	1009.0	51.43%	554.7	31.99%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-70	-1.614e+02	0.0000	1418.0	72.27%	913.1	52.65%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-69	-1.608e+02	0.0000	1595.0	81.29%	1091.0	62.92%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-69	-1.603e+02	0.0000	1255.0	63.97%	764.6	44.09%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-69	-1.597e+02	0.0000	1875.0	95.57%	1430.1	82.47%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-69	-1.589e+02	0.0000	1940.0	98.88%	1541.1	88.87%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-68	-1.586e+02	0.0000	1050.0	53.52%	591.2	34.09%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-68	-1.577e+02	0.0000	1028.0	52.40%	574.8	33.15%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-68	-1.574e+02	0.0000	1651.0	84.15%	1155.8	66.65%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-68	-1.573e+02	0.0000	1249.0	63.66%	763.0	44.00%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-68	-1.570e+02	0.0000	1335.0	68.04%	840.6	48.48%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-68	-1.570e+02	0.0000	809.0	41.23%	405.1	23.36%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-67	-1.557e+02	0.0000	1906.0	97.15%	1482.2	85.47%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-67	-1.556e+02	0.0000	1155.0	58.87%	682.8	39.38%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-67	-1.547e+02	0.0000	982.0	50.05%	540.3	31.16%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-66	-1.539e+02	0.0000	1961.0	99.95%	1599.9	92.27%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-66	-1.536e+02	0.0000	895.0	45.62%	473.9	27.33%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-66	-1.535e+02	0.0000	798.0	40.67%	400.9	23.12%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-65	-1.504e+02	0.0000	1330.0	67.79%	843.3	48.63%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-65	-1.498e+02	0.0000	1934.0	98.57%	1537.0	88.64%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-64	-1.493e+02	0.0000	782.0	39.86%	392.3	22.63%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-64	-1.492e+02	0.0000	821.0	41.85%	421.2	24.29%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-64	-1.478e+02	0.0000	920.0	46.89%	498.3	28.74%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-64	-1.475e+02	0.0000	1935.0	98.62%	1541.2	88.88%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-63	-1.469e+02	0.0000	1099.0	56.01%	644.1	37.15%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-63	-1.468e+02	0.0000	1008.0	51.38%	569.1	32.82%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-62	-1.429e+02	0.0000	1134.0	57.80%	678.1	39.10%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-61	-1.420e+02	0.0000	1148.0	58.51%	691.3	39.87%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-61	-1.410e+02	0.0000	1115.0	56.83%	664.1	38.30%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-61	-1.409e+02	0.0000	1892.0	96.43%	1474.1	85.01%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-61	-1.405e+02	0.0000	1383.0	70.49%	904.1	52.14%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-60	-1.401e+02	0.0000	1218.0	62.08%	754.8	43.53%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-60	-1.400e+02	0.0000	1066.0	54.33%	624.1	35.99%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-60	-1.394e+02	0.0000	790.0	40.27%	408.0	23.53%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-60	-1.386e+02	0.0000	1147.0	58.46%	694.6	40.06%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-60	-1.383e+02	0.0000	1036.0	52.80%	601.5	34.69%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-59	-1.380e+02	0.0000	1055.0	53.77%	617.3	35.60%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-59	-1.375e+02	0.0000	946.0	48.22%	529.3	30.52%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-59	-1.375e+02	0.0000	1210.0	61.67%	750.1	43.25%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-59	-1.373e+02	0.0000	1031.0	52.55%	598.2	34.50%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-59	-1.363e+02	0.0000	659.0	33.59%	315.9	18.22%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-58	-1.353e+02	0.0000	933.0	47.55%	521.8	30.09%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-58	-1.339e+02	0.0000	875.0	44.60%	477.7	27.55%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-57	-1.321e+02	0.0000	1002.0	51.07%	580.7	33.49%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-57	-1.319e+02	0.0000	1131.0	57.65%	688.6	39.71%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-57	-1.319e+02	0.0000	507.0	25.84%	216.9	12.51%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-57	-1.319e+02	0.0000	1037.0	52.85%	609.6	35.15%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-56	-1.311e+02	0.0000	1957.0	99.75%	1605.9	92.61%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-56	-1.311e+02	0.0000	1072.0	54.64%	639.7	36.89%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-56	-1.304e+02	0.0000	742.0	37.82%	380.3	21.93%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-56	-1.300e+02	0.0000	922.0	46.99%	518.4	29.90%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-56	-1.300e+02	0.0000	836.0	42.61%	451.8	26.05%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-56	-1.296e+02	0.0000	855.0	43.58%	466.7	26.91%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-55	-1.287e+02	0.0000	1949.0	99.34%	1587.9	91.57%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-55	-1.279e+02	0.0000	1241.0	63.25%	789.9	45.55%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-55	-1.271e+02	0.0000	1206.0	61.47%	759.4	43.79%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-55	-1.269e+02	0.0000	1035.0	52.75%	613.3	35.37%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-54	-1.266e+02	0.0000	591.0	30.12%	276.2	15.93%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-54	-1.254e+02	0.0000	952.0	48.52%	547.2	31.56%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-54	-1.247e+02	0.0000	931.0	47.45%	531.2	30.63%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-53	-1.239e+02	0.0000	698.0	35.58%	354.3	20.43%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-53	-1.231e+02	0.0000	1050.0	53.52%	630.7	36.37%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-53	-1.228e+02	0.0000	902.0	45.97%	510.8	29.46%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-53	-1.227e+02	0.0000	912.0	46.48%	518.0	29.87%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-53	-1.225e+02	0.0000	1092.0	55.66%	666.5	38.43%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-52	-1.218e+02	0.0000	624.0	31.80%	303.2	17.48%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-52	-1.218e+02	0.0000	1954.0	99.59%	1605.7	92.60%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-52	-1.203e+02	0.0000	761.0	38.79%	404.2	23.31%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-51	-1.192e+02	0.0000	646.0	32.93%	321.8	18.56%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-51	-1.187e+02	0.0000	966.0	49.24%	566.7	32.68%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-51	-1.185e+02	0.0000	522.0	26.61%	236.6	13.64%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-51	-1.175e+02	0.0000	777.0	39.60%	419.6	24.20%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-50	-1.174e+02	0.0000	969.0	49.39%	570.9	32.92%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-50	-1.153e+02	0.0000	852.0	43.43%	479.2	27.63%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-49	-1.138e+02	0.0000	1260.0	64.22%	824.9	47.57%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-49	-1.135e+02	0.0000	753.0	38.38%	405.2	23.37%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-48	-1.116e+02	0.0000	650.0	33.13%	331.5	19.12%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-48	-1.106e+02	0.0000	882.0	44.95%	508.7	29.33%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-47	-1.097e+02	0.0000	646.0	32.93%	330.0	19.03%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-46	-1.077e+02	0.0000	758.0	38.63%	415.3	23.95%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-46	-1.070e+02	0.0000	549.0	27.98%	264.4	15.25%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-46	-1.069e+02	0.0000	827.0	42.15%	469.6	27.08%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-46	-1.064e+02	0.0000	1185.0	60.40%	767.9	44.28%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-45	-1.055e+02	0.0000	625.0	31.86%	319.1	18.40%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-44	-1.036e+02	0.0000	650.0	33.13%	339.2	19.56%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-44	-1.033e+02	0.0000	640.0	32.62%	332.1	19.15%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-44	-1.029e+02	0.0000	755.0	38.48%	418.4	24.13%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-44	-1.029e+02	0.0000	609.0	31.04%	310.3	17.89%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-43	-1.010e+02	0.0000	1139.0	58.05%	735.0	42.39%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-42	-9.887e+01	0.0000	521.0	26.55%	252.6	14.57%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-42	-9.849e+01	0.0000	651.0	33.18%	345.0	19.90%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-42	-9.847e+01	0.0000	674.0	34.35%	362.0	20.88%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-42	-9.843e+01	0.0000	640.0	32.62%	337.9	19.49%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-42	-9.829e+01	0.0000	590.0	30.07%	302.0	17.41%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-42	-9.822e+01	0.0000	1958.0	99.80%	1636.3	94.36%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-42	-9.808e+01	0.0000	980.0	49.95%	603.6	34.81%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-42	-9.794e+01	0.0000	657.0	33.49%	350.5	20.21%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-42	-9.716e+01	0.0000	825.0	42.05%	479.1	27.63%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-42	-9.696e+01	0.0000	560.0	28.54%	281.5	16.23%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-41	-9.658e+01	0.0000	686.0	34.96%	373.6	21.55%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-41	-9.649e+01	0.0000	548.0	27.93%	273.7	15.78%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-40	-9.399e+01	0.0000	1013.0	51.63%	636.6	36.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-40	-9.261e+01	0.0000	485.0	24.72%	233.4	13.46%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-40	-9.226e+01	0.0000	486.0	24.77%	234.7	13.54%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-39	-9.163e+01	0.0000	554.0	28.24%	282.6	16.30%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-39	-9.075e+01	0.0000	622.0	31.70%	332.1	19.15%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-39	-9.072e+01	0.0000	589.0	30.02%	308.7	17.80%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-39	-9.042e+01	0.0000	305.0	15.55%	119.4	6.88%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-39	-9.041e+01	0.0000	749.0	38.18%	428.8	24.73%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-39	-9.018e+01	0.0000	602.0	30.68%	318.7	18.38%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-39	-8.999e+01	0.0000	352.0	17.94%	148.2	8.55%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-38	-8.968e+01	0.0000	634.0	32.31%	343.0	19.78%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-38	-8.888e+01	0.0000	822.0	41.90%	487.4	28.11%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-38	-8.876e+01	0.0000	533.0	27.17%	270.4	15.59%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-38	-8.801e+01	0.0000	539.0	27.47%	275.1	15.86%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-38	-8.770e+01	0.0000	561.0	28.59%	291.4	16.80%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-38	-8.764e+01	0.0000	590.0	30.07%	312.4	18.02%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-37	-8.746e+01	0.0000	632.0	32.21%	343.2	19.79%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-37	-8.698e+01	0.0000	383.0	19.52%	170.6	9.84%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-37	-8.636e+01	0.0000	531.0	27.06%	271.4	15.65%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-34	-7.962e+01	0.0000	441.0	22.48%	215.6	12.43%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-34	-7.926e+01	0.0000	595.0	30.33%	325.3	18.76%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-33	-7.622e+01	0.0000	670.0	34.15%	385.7	22.24%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-32	-7.565e+01	0.0000	460.0	23.45%	232.1	13.38%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-32	-7.416e+01	0.0000	690.0	35.17%	403.7	23.28%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-32	-7.379e+01	0.0000	402.0	20.49%	194.5	11.22%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-31	-7.260e+01	0.0000	793.0	40.42%	486.9	28.08%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-30	-7.097e+01	0.0000	420.0	21.41%	209.2	12.06%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-30	-7.075e+01	0.0000	368.0	18.76%	174.6	10.07%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-30	-7.065e+01	0.0000	513.0	26.15%	275.6	15.89%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-30	-7.045e+01	0.0000	295.0	15.04%	127.3	7.34%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-30	-7.043e+01	0.0000	1948.0	99.29%	1638.5	94.49%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-30	-7.019e+01	0.0000	687.0	35.02%	406.9	23.47%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-29	-6.894e+01	0.0000	367.0	18.71%	175.4	10.12%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-29	-6.772e+01	0.0000	389.0	19.83%	191.9	11.06%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-29	-6.740e+01	0.0000	259.0	13.20%	107.6	6.21%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-29	-6.678e+01	0.0000	451.0	22.99%	235.4	13.57%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-28	-6.603e+01	0.0000	259.0	13.20%	108.7	6.27%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-28	-6.505e+01	0.0000	330.0	16.82%	154.9	8.93%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-27	-6.422e+01	0.0000	295.0	15.04%	132.7	7.65%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-26	-6.110e+01	0.0000	294.0	14.98%	134.7	7.77%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-25	-5.779e+01	0.0000	367.0	18.71%	186.7	10.77%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-24	-5.691e+01	0.0000	544.0	27.73%	316.0	18.22%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-23	-5.459e+01	0.0000	330.0	16.82%	164.8	9.51%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-23	-5.381e+01	0.0000	533.0	27.17%	311.4	17.96%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-23	-5.371e+01	0.0000	601.0	30.63%	363.8	20.98%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-22	-5.281e+01	0.0000	339.0	17.28%	172.6	9.95%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-22	-5.265e+01	0.0000	346.0	17.64%	177.6	10.24%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-22	-5.233e+01	0.0000	444.0	22.63%	247.1	14.25%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-22	-5.215e+01	0.0000	423.0	21.56%	232.7	13.42%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-22	-5.123e+01	0.0000	234.0	11.93%	104.4	6.02%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-22	-5.073e+01	0.0000	415.0	21.15%	228.8	13.19%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-21	-4.961e+01	0.0000	388.0	19.78%	210.2	12.12%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-21	-4.933e+01	0.0000	494.0	25.18%	288.8	16.65%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-21	-4.901e+01	0.0000	512.0	26.10%	302.4	17.44%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-20	-4.699e+01	0.0000	82.0	4.18%	21.5	1.24%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-20	-4.626e+01	0.0000	261.0	13.30%	126.0	7.27%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-19	-4.600e+01	0.0000	305.0	15.55%	156.3	9.01%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-19	-4.551e+01	0.0000	323.0	16.46%	169.7	9.78%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-19	-4.441e+01	0.0000	358.0	18.25%	195.9	11.30%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-19	-4.387e+01	0.0000	343.0	17.48%	185.7	10.71%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-19	-4.380e+01	0.0000	313.0	15.95%	164.4	9.48%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-18	-4.366e+01	0.0000	447.0	22.78%	261.4	15.07%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-18	-4.363e+01	0.0000	242.0	12.33%	116.7	6.73%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-18	-4.363e+01	0.0000	242.0	12.33%	116.7	6.73%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-18	-4.340e+01	0.0000	154.0	7.85%	61.7	3.56%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-18	-4.331e+01	0.0000	217.0	11.06%	100.3	5.78%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-18	-4.316e+01	0.0000	360.0	18.35%	198.5	11.45%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-18	-4.316e+01	0.0000	360.0	18.35%	198.5	11.45%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-18	-4.270e+01	0.0000	324.0	16.51%	173.7	10.02%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-18	-4.166e+01	0.0000	157.0	8.00%	64.3	3.71%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-17	-4.126e+01	0.0000	330.0	16.82%	179.0	10.33%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-15	-3.638e+01	0.0000	67.0	3.41%	18.3	1.06%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-15	-3.589e+01	0.0000	288.0	14.68%	156.5	9.03%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-14	-3.346e+01	0.0000	285.0	14.53%	157.1	9.06%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-14	-3.304e+01	0.0000	280.0	14.27%	155.0	8.94%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-14	-3.249e+01	0.0000	242.0	12.33%	128.6	7.42%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-13	-3.164e+01	0.0000	141.0	7.19%	62.1	3.58%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-13	-3.062e+01	0.0000	243.0	12.39%	131.3	7.57%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-12	-2.780e+01	0.0000	165.0	8.41%	81.1	4.68%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-11	-2.737e+01	0.0000	237.0	12.08%	131.9	7.60%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-11	-2.709e+01	0.0000	104.0	5.30%	43.5	2.51%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-10	-2.516e+01	0.0000	285.0	14.53%	169.1	9.75%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-10	-2.436e+01	0.0000	193.0	9.84%	104.2	6.01%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-10	-2.336e+01	0.0000	218.0	11.11%	123.0	7.10%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-10	-2.333e+01	0.0000	168.0	8.56%	88.7	5.12%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-9	-2.201e+01	0.0000	58.0	2.96%	20.4	1.18%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-8	-1.954e+01	0.0000	135.0	6.88%	70.6	4.07%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-8	-1.929e+01	0.0000	215.0	10.96%	127.9	7.38%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-7	-1.800e+01	0.0000	122.0	6.22%	64.0	3.69%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-7	-1.695e+01	0.0000	139.0	7.08%	76.4	4.41%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-7	-1.615e+01	0.0000	101.0	5.15%	51.9	2.99%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-6	-1.545e+01	0.0000	234.0	11.93%	148.4	8.56%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-6	-1.447e+01	0.0000	58.0	2.96%	25.8	1.49%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-5	-1.163e+01	0.0000	25.0	1.27%	8.3	0.48%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-4	-1.130e+01	0.0000	105.0	5.35%	60.0	3.46%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-4	-1.107e+01	0.0000	67.0	3.41%	34.3	1.98%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-4	-1.054e+01	0.0000	202.0	10.30%	134.6	7.76%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-4	-1.050e+01	0.0000	57.0	2.91%	28.6	1.65%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-4	-1.024e+01	0.0000	111.0	5.66%	66.4	3.83%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-3	-8.946e+00	0.0001	170.0	8.66%	113.1	6.52%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-3	-8.423e+00	0.0002	55.0	2.80%	29.2	1.69%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-3	-7.637e+00	0.0005	153.0	7.80%	104.0	6.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-7.499e+00	0.0006	46.0	2.34%	24.5	1.41%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-2	-6.275e+00	0.0019	35.0	1.78%	18.0	1.04%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-2	-5.835e+00	0.0029	106.0	5.40%	71.9	4.15%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-2	-5.497e+00	0.0041	20.0	1.02%	9.8	0.57%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-2	-5.201e+00	0.0055	13.0	0.66%	5.0	0.29%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.931e+00	0.0196	32.0	1.63%	19.3	1.12%