Information for 20-CGCAAATC (Motif 45)

A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T A C G T A C T G A G T C A C T G
p-value:1e-81
log p-value:-1.869e+02
Information Content per bp:1.530
Number of Target Sequences with motif1456.0
Percentage of Target Sequences with motif74.21%
Number of Background Sequences with motif922.7
Percentage of Background Sequences with motif53.21%
Average Position of motif in Targets3669.3 +/- 3987.2bp
Average Position of motif in Background1991.9 +/- 1930.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.30
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CGCAAATC----
--CAAATCACTG
 A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGCAAATC
ATATGCAAAT-
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGCAAATC
CACTAATT
 A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C
G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGCAAATC
TTATGCAAAT-
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGCAAATC--
ATATGCAAATNNN
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

RUNX3/MA0684.1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGCAAATC
AAACCGCAAA--
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CGCAAATC---
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CGCAAATC---
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGCAAATC-
-GCTAATCC
 A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C A C G T
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

Hoxc9/MA0485.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGCAAATC--
GGCCATAAATCAC
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A C G T A A C G T A G T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C