Information for 4-GCTCAGAAAC (Motif 12)

A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C
Reverse Opposite:
A C T G G A C T A C G T C G A T G T A C A G C T C A T G G T C A T A C G A T G C
p-value:1e-111
log p-value:-2.563e+02
Information Content per bp:1.792
Number of Target Sequences with motif1379.0
Percentage of Target Sequences with motif70.29%
Number of Background Sequences with motif783.6
Percentage of Background Sequences with motif45.19%
Average Position of motif in Targets3640.0 +/- 3881.5bp
Average Position of motif in Background2128.1 +/- 2157.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.91
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTCAGAAAC-
GCTCGTAAAAA
 A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCTCAGAAAC---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCTCAGAAAC---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCTCAGAAAC-
KGTTGCTAGGMAACA
 A C G T A C G T A C G T A C G T A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCTCAGAAAC
NTTTCTNAGAAA-
 A C G T A C G T A C G T A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T

PB0115.1_Ehf_2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCTCAGAAAC----
AAGATCGGAANTNNNA
 A C G T A C G T A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C A C G T A C G T A C G T A C G T
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

STAT3/MA0144.2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGAAAC
CTTCTGGGAAA-
 A C G T A C G T A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C
A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCTCAGAAAC
NGCTN------
 A C G T A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCTCAGAAAC--
GGTCGTAAAATT
 A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTCAGAAAC
TTCTTGGAAAN
 A C G T A T C G A T G C A C G T G T A C T C G A A C T G C G T A C G T A C T G A G T A C
A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T