Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1703)	% of Background Sequences with Motif
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-137	-3.173e+02	0.0000	1025.0	52.24%	437.1	25.67%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-137	-3.169e+02	0.0000	1812.0	92.35%	1178.1	69.20%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-128	-2.958e+02	0.0000	1744.0	88.89%	1109.5	65.17%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-126	-2.901e+02	0.0000	1596.0	81.35%	950.0	55.80%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-125	-2.891e+02	0.0000	1538.0	78.39%	891.1	52.34%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-124	-2.868e+02	0.0000	1602.0	81.65%	958.2	56.28%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-124	-2.858e+02	0.0000	1817.0	92.61%	1210.7	71.12%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-124	-2.856e+02	0.0000	1600.0	81.55%	957.2	56.22%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-122	-2.822e+02	0.0000	1489.0	75.89%	849.1	49.88%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-122	-2.821e+02	0.0000	1720.0	87.67%	1092.5	64.17%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-120	-2.767e+02	0.0000	1384.0	70.54%	756.4	44.43%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-119	-2.753e+02	0.0000	1341.0	68.35%	719.3	42.25%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-119	-2.751e+02	0.0000	1487.0	75.79%	853.3	50.13%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-118	-2.730e+02	0.0000	1778.0	90.62%	1170.8	68.78%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-118	-2.730e+02	0.0000	1445.0	73.65%	815.2	47.89%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-118	-2.728e+02	0.0000	1678.0	85.52%	1052.5	61.82%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-118	-2.720e+02	0.0000	1443.0	73.55%	814.7	47.85%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-117	-2.716e+02	0.0000	1341.0	68.35%	722.4	42.44%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-117	-2.715e+02	0.0000	1565.0	79.77%	933.2	54.82%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-114	-2.645e+02	0.0000	1788.0	91.13%	1190.1	69.91%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-114	-2.627e+02	0.0000	1651.0	84.15%	1031.6	60.60%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-113	-2.625e+02	0.0000	1832.0	93.37%	1250.2	73.44%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-113	-2.618e+02	0.0000	1454.0	74.11%	833.1	48.94%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-113	-2.605e+02	0.0000	1749.0	89.14%	1146.0	67.32%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-112	-2.587e+02	0.0000	1542.0	78.59%	922.0	54.16%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-111	-2.568e+02	0.0000	1414.0	72.07%	800.4	47.02%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-110	-2.539e+02	0.0000	1628.0	82.98%	1014.5	59.59%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-109	-2.530e+02	0.0000	1644.0	83.79%	1032.0	60.62%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-109	-2.521e+02	0.0000	1668.0	85.02%	1059.7	62.25%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-109	-2.520e+02	0.0000	1463.0	74.57%	850.2	49.94%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-109	-2.519e+02	0.0000	1815.0	92.51%	1236.2	72.62%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-108	-2.505e+02	0.0000	1776.0	90.52%	1187.5	69.76%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-108	-2.497e+02	0.0000	1153.0	58.77%	582.8	34.24%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-107	-2.487e+02	0.0000	1525.0	77.73%	913.9	53.68%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-107	-2.486e+02	0.0000	1530.0	77.98%	918.4	53.95%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-107	-2.479e+02	0.0000	1883.0	95.97%	1337.8	78.58%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-107	-2.478e+02	0.0000	1822.0	92.86%	1249.3	73.38%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-107	-2.468e+02	0.0000	1637.0	83.44%	1030.8	60.55%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-107	-2.466e+02	0.0000	1567.0	79.87%	957.1	56.22%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-106	-2.452e+02	0.0000	1725.0	87.92%	1130.4	66.40%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-106	-2.445e+02	0.0000	1457.0	74.26%	851.1	49.99%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-104	-2.410e+02	0.0000	1862.0	94.90%	1311.1	77.01%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-104	-2.403e+02	0.0000	977.0	49.80%	454.5	26.70%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-104	-2.401e+02	0.0000	1783.0	90.88%	1206.0	70.84%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-103	-2.389e+02	0.0000	1479.0	75.38%	877.1	51.52%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-103	-2.387e+02	0.0000	1707.0	87.00%	1115.2	65.51%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-103	-2.385e+02	0.0000	1464.0	74.62%	863.3	50.71%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-103	-2.383e+02	0.0000	1673.0	85.27%	1077.4	63.29%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-103	-2.379e+02	0.0000	1455.0	74.16%	855.5	50.25%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-102	-2.371e+02	0.0000	1815.0	92.51%	1249.1	73.37%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-102	-2.353e+02	0.0000	1914.0	97.55%	1399.9	82.23%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-101	-2.346e+02	0.0000	1571.0	80.07%	972.5	57.12%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-101	-2.337e+02	0.0000	1759.0	89.65%	1181.1	69.38%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-101	-2.336e+02	0.0000	1702.0	86.75%	1114.2	65.45%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-101	-2.335e+02	0.0000	1620.0	82.57%	1024.1	60.16%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-101	-2.335e+02	0.0000	1620.0	82.57%	1024.8	60.20%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-101	-2.334e+02	0.0000	1783.0	90.88%	1211.7	71.17%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-101	-2.328e+02	0.0000	1417.0	72.22%	824.6	48.44%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-101	-2.327e+02	0.0000	1872.0	95.41%	1334.0	78.36%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-100	-2.324e+02	0.0000	1568.0	79.92%	971.1	57.04%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-100	-2.323e+02	0.0000	1922.0	97.96%	1416.2	83.19%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-100	-2.322e+02	0.0000	1873.0	95.46%	1335.5	78.45%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-100	-2.312e+02	0.0000	1439.0	73.34%	846.4	49.72%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-100	-2.307e+02	0.0000	1391.0	70.90%	802.8	47.16%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-99	-2.300e+02	0.0000	1274.0	64.93%	699.2	41.07%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-98	-2.276e+02	0.0000	1642.0	83.69%	1053.2	61.87%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-98	-2.275e+02	0.0000	1810.0	92.25%	1251.7	73.52%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-98	-2.271e+02	0.0000	1343.0	68.45%	762.1	44.77%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-98	-2.263e+02	0.0000	1789.0	91.18%	1225.8	72.00%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-98	-2.263e+02	0.0000	1624.0	82.77%	1035.7	60.84%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-98	-2.259e+02	0.0000	1802.0	91.85%	1242.2	72.97%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-97	-2.256e+02	0.0000	1311.0	66.82%	735.2	43.19%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-97	-2.245e+02	0.0000	1713.0	87.31%	1135.3	66.69%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-97	-2.245e+02	0.0000	1311.0	66.82%	736.7	43.28%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-97	-2.245e+02	0.0000	1356.0	69.11%	776.0	45.59%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-97	-2.243e+02	0.0000	1786.0	91.03%	1223.6	71.88%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-96	-2.231e+02	0.0000	1881.0	95.87%	1355.5	79.62%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-96	-2.231e+02	0.0000	1305.0	66.51%	732.3	43.01%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-96	-2.226e+02	0.0000	1595.0	81.29%	1008.2	59.22%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-96	-2.226e+02	0.0000	1458.0	74.31%	872.7	51.26%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-96	-2.222e+02	0.0000	1464.0	74.62%	878.6	51.61%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-96	-2.211e+02	0.0000	1761.0	89.76%	1195.2	70.21%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-95	-2.207e+02	0.0000	1879.0	95.77%	1354.4	79.56%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-95	-2.202e+02	0.0000	1757.0	89.55%	1191.7	70.00%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-95	-2.194e+02	0.0000	1555.0	79.26%	970.6	57.01%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-95	-2.189e+02	0.0000	1624.0	82.77%	1042.4	61.23%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-95	-2.188e+02	0.0000	1765.0	89.96%	1202.8	70.65%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-94	-2.178e+02	0.0000	1820.0	92.76%	1273.7	74.82%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-94	-2.169e+02	0.0000	1843.0	93.93%	1305.8	76.70%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-94	-2.169e+02	0.0000	1652.0	84.20%	1074.1	63.09%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-94	-2.168e+02	0.0000	1730.0	88.18%	1162.0	68.26%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-93	-2.163e+02	0.0000	1307.0	66.62%	740.4	43.49%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-93	-2.149e+02	0.0000	1278.0	65.14%	716.8	42.11%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-92	-2.140e+02	0.0000	1844.0	93.99%	1309.6	76.93%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-92	-2.138e+02	0.0000	1465.0	74.67%	887.8	52.15%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-92	-2.122e+02	0.0000	1597.0	81.40%	1020.9	59.97%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-91	-2.113e+02	0.0000	1886.0	96.13%	1373.5	80.68%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-91	-2.103e+02	0.0000	1570.0	80.02%	994.0	58.39%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-90	-2.091e+02	0.0000	1557.0	79.36%	982.1	57.69%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-90	-2.091e+02	0.0000	1595.0	81.29%	1021.5	60.00%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-90	-2.086e+02	0.0000	1493.0	76.10%	919.1	53.99%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-90	-2.084e+02	0.0000	1469.0	74.87%	896.8	52.68%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-90	-2.080e+02	0.0000	1804.0	91.95%	1261.4	74.10%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-90	-2.077e+02	0.0000	1891.0	96.38%	1384.2	81.31%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-90	-2.076e+02	0.0000	1911.0	97.40%	1417.4	83.26%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-90	-2.073e+02	0.0000	1570.0	80.02%	998.0	58.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-89	-2.064e+02	0.0000	1335.0	68.04%	774.4	45.49%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-89	-2.061e+02	0.0000	1892.0	96.43%	1387.4	81.50%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-89	-2.060e+02	0.0000	1455.0	74.16%	885.7	52.02%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-89	-2.057e+02	0.0000	1206.0	61.47%	663.9	39.00%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-89	-2.052e+02	0.0000	886.0	45.16%	415.0	24.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-88	-2.049e+02	0.0000	1592.0	81.14%	1022.5	60.06%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-88	-2.047e+02	0.0000	1675.0	85.37%	1111.0	65.26%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-88	-2.046e+02	0.0000	1932.0	98.47%	1458.5	85.67%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-88	-2.041e+02	0.0000	1391.0	70.90%	827.8	48.63%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-88	-2.040e+02	0.0000	1794.0	91.44%	1252.7	73.58%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-88	-2.039e+02	0.0000	1750.0	89.19%	1198.8	70.42%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-88	-2.037e+02	0.0000	1218.0	62.08%	675.1	39.65%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-88	-2.036e+02	0.0000	1461.0	74.46%	893.3	52.48%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-88	-2.030e+02	0.0000	1854.0	94.50%	1333.2	78.31%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-88	-2.027e+02	0.0000	1714.0	87.36%	1157.1	67.97%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-87	-2.023e+02	0.0000	1376.0	70.13%	815.6	47.91%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-87	-2.022e+02	0.0000	1866.0	95.11%	1351.8	79.41%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-87	-2.019e+02	0.0000	1547.0	78.85%	979.4	57.53%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-87	-2.017e+02	0.0000	1797.0	91.59%	1258.5	73.92%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-87	-2.014e+02	0.0000	982.0	50.05%	488.7	28.71%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-87	-2.014e+02	0.0000	1639.0	83.54%	1075.4	63.17%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-87	-2.011e+02	0.0000	1670.0	85.12%	1109.9	65.19%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-87	-2.010e+02	0.0000	1839.0	93.73%	1314.2	77.19%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-87	-2.004e+02	0.0000	969.0	49.39%	479.3	28.15%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-87	-2.004e+02	0.0000	1829.0	93.22%	1301.4	76.45%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-86	-1.999e+02	0.0000	1077.0	54.89%	563.7	33.11%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-86	-1.996e+02	0.0000	1440.0	73.39%	877.8	51.56%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-86	-1.992e+02	0.0000	1704.0	86.85%	1149.7	67.54%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-86	-1.989e+02	0.0000	1270.0	64.73%	724.3	42.55%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-86	-1.982e+02	0.0000	1915.0	97.60%	1432.0	84.12%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-85	-1.979e+02	0.0000	1368.0	69.72%	812.8	47.74%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-85	-1.979e+02	0.0000	1177.0	59.99%	646.4	37.97%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-85	-1.975e+02	0.0000	1824.0	92.97%	1297.8	76.24%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-85	-1.972e+02	0.0000	834.0	42.51%	383.5	22.53%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-85	-1.969e+02	0.0000	1379.0	70.29%	823.0	48.35%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-85	-1.968e+02	0.0000	1480.0	75.43%	918.1	53.93%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-85	-1.967e+02	0.0000	1852.0	94.39%	1336.3	78.49%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-85	-1.966e+02	0.0000	1906.0	97.15%	1418.0	83.30%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-85	-1.964e+02	0.0000	1922.0	97.96%	1446.2	84.95%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-84	-1.953e+02	0.0000	1662.0	84.71%	1106.6	65.00%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-84	-1.946e+02	0.0000	1383.0	70.49%	829.1	48.70%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-84	-1.943e+02	0.0000	1500.0	76.45%	940.2	55.23%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-83	-1.931e+02	0.0000	1510.0	76.96%	951.1	55.87%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-83	-1.926e+02	0.0000	1822.0	92.86%	1299.1	76.31%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-82	-1.904e+02	0.0000	1651.0	84.15%	1099.5	64.59%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-82	-1.901e+02	0.0000	1474.0	75.13%	919.3	54.00%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-82	-1.898e+02	0.0000	1276.0	65.04%	738.1	43.36%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-81	-1.876e+02	0.0000	920.0	46.89%	453.6	26.65%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-81	-1.875e+02	0.0000	1255.0	63.97%	722.2	42.42%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-81	-1.874e+02	0.0000	1362.0	69.42%	817.1	48.00%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-81	-1.872e+02	0.0000	1561.0	79.56%	1008.7	59.25%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-81	-1.871e+02	0.0000	1050.0	53.52%	553.4	32.51%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-80	-1.859e+02	0.0000	1589.0	80.99%	1039.0	61.03%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-80	-1.858e+02	0.0000	1757.0	89.55%	1224.4	71.92%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-80	-1.856e+02	0.0000	1606.0	81.86%	1056.3	62.04%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-80	-1.850e+02	0.0000	1079.0	54.99%	578.9	34.00%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-79	-1.839e+02	0.0000	761.0	38.79%	343.0	20.15%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-79	-1.826e+02	0.0000	1497.0	76.30%	949.2	55.76%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-79	-1.826e+02	0.0000	1917.0	97.71%	1449.7	85.16%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-78	-1.816e+02	0.0000	1085.0	55.30%	586.3	34.44%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-78	-1.814e+02	0.0000	1826.0	93.07%	1315.9	77.30%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-78	-1.811e+02	0.0000	1202.0	61.26%	683.4	40.14%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-78	-1.808e+02	0.0000	1741.0	88.74%	1210.2	71.09%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-78	-1.801e+02	0.0000	1943.0	99.03%	1501.5	88.20%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-78	-1.800e+02	0.0000	1812.0	92.35%	1298.5	76.27%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-78	-1.796e+02	0.0000	1940.0	98.88%	1496.0	87.88%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-77	-1.787e+02	0.0000	1191.0	60.70%	676.2	39.72%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-77	-1.785e+02	0.0000	1278.0	65.14%	751.8	44.16%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-77	-1.784e+02	0.0000	1787.0	91.08%	1268.0	74.48%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-77	-1.783e+02	0.0000	1435.0	73.14%	894.1	52.52%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-77	-1.782e+02	0.0000	1242.0	63.30%	720.7	42.33%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-77	-1.779e+02	0.0000	1801.0	91.79%	1286.8	75.59%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-76	-1.771e+02	0.0000	1071.0	54.59%	579.9	34.06%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-76	-1.758e+02	0.0000	1398.0	71.25%	863.0	50.69%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-76	-1.758e+02	0.0000	1890.0	96.33%	1411.7	82.93%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-76	-1.757e+02	0.0000	1311.0	66.82%	783.2	46.01%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-76	-1.751e+02	0.0000	1236.0	63.00%	718.9	42.23%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-76	-1.750e+02	0.0000	1118.0	56.98%	619.2	36.37%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-75	-1.745e+02	0.0000	1807.0	92.10%	1297.4	76.21%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-75	-1.740e+02	0.0000	1008.0	51.38%	532.4	31.27%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-75	-1.739e+02	0.0000	1413.0	72.02%	878.3	51.59%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-75	-1.738e+02	0.0000	1330.0	67.79%	802.8	47.16%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-75	-1.732e+02	0.0000	1317.0	67.13%	791.9	46.52%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-74	-1.719e+02	0.0000	1340.0	68.30%	813.3	47.77%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-74	-1.715e+02	0.0000	1345.0	68.55%	818.2	48.06%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-74	-1.707e+02	0.0000	1343.0	68.45%	817.6	48.02%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-73	-1.690e+02	0.0000	1277.0	65.09%	760.2	44.65%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-73	-1.689e+02	0.0000	1389.0	70.80%	861.1	50.58%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-73	-1.686e+02	0.0000	1898.0	96.74%	1430.1	84.01%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-73	-1.686e+02	0.0000	1898.0	96.74%	1430.2	84.01%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-72	-1.675e+02	0.0000	855.0	43.58%	422.9	24.84%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-71	-1.655e+02	0.0000	1360.0	69.32%	838.5	49.25%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-71	-1.653e+02	0.0000	1009.0	51.43%	541.8	31.82%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-70	-1.631e+02	0.0000	1254.0	63.91%	746.4	43.84%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-70	-1.631e+02	0.0000	1669.0	85.07%	1147.0	67.38%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-70	-1.629e+02	0.0000	1075.0	54.79%	597.0	35.07%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-70	-1.615e+02	0.0000	749.0	38.18%	351.2	20.63%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-69	-1.607e+02	0.0000	1055.0	53.77%	582.6	34.22%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-69	-1.606e+02	0.0000	1276.0	65.04%	768.4	45.14%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-68	-1.577e+02	0.0000	1857.0	94.65%	1380.2	81.07%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-68	-1.572e+02	0.0000	1875.0	95.57%	1406.7	82.63%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-68	-1.568e+02	0.0000	1611.0	82.11%	1092.3	64.16%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-67	-1.562e+02	0.0000	821.0	41.85%	407.9	23.96%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-67	-1.556e+02	0.0000	1066.0	54.33%	596.5	35.04%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-67	-1.555e+02	0.0000	742.0	37.82%	351.4	20.64%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-67	-1.553e+02	0.0000	1147.0	58.46%	663.3	38.96%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-67	-1.551e+02	0.0000	1927.0	98.22%	1491.8	87.63%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-67	-1.550e+02	0.0000	1858.0	94.70%	1384.0	81.30%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-67	-1.550e+02	0.0000	1155.0	58.87%	670.1	39.36%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-66	-1.538e+02	0.0000	707.0	36.03%	328.7	19.31%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-66	-1.538e+02	0.0000	933.0	47.55%	493.1	28.96%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-66	-1.532e+02	0.0000	1148.0	58.51%	666.0	39.12%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-66	-1.527e+02	0.0000	1241.0	63.25%	746.1	43.83%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-66	-1.523e+02	0.0000	922.0	46.99%	486.2	28.56%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-65	-1.517e+02	0.0000	1035.0	52.75%	575.2	33.78%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-65	-1.517e+02	0.0000	602.0	30.68%	259.2	15.23%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-65	-1.508e+02	0.0000	1050.0	53.52%	588.9	34.59%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-65	-1.504e+02	0.0000	1935.0	98.62%	1510.4	88.72%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-65	-1.501e+02	0.0000	1210.0	61.67%	722.8	42.46%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-65	-1.499e+02	0.0000	1906.0	97.15%	1460.3	85.78%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-65	-1.497e+02	0.0000	946.0	48.22%	507.1	29.79%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-64	-1.485e+02	0.0000	1223.0	62.33%	735.6	43.21%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-64	-1.478e+02	0.0000	1394.0	71.05%	889.7	52.26%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-63	-1.471e+02	0.0000	1934.0	98.57%	1511.4	88.78%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-63	-1.460e+02	0.0000	931.0	47.45%	499.3	29.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-62	-1.450e+02	0.0000	1072.0	54.64%	612.0	35.95%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-62	-1.449e+02	0.0000	1892.0	96.43%	1443.3	84.78%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-62	-1.448e+02	0.0000	902.0	45.97%	478.0	28.08%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-62	-1.446e+02	0.0000	1961.0	99.95%	1578.0	92.69%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-62	-1.441e+02	0.0000	798.0	40.67%	401.3	23.57%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-62	-1.441e+02	0.0000	646.0	32.93%	294.2	17.28%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-62	-1.436e+02	0.0000	886.0	45.16%	467.5	27.46%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-62	-1.429e+02	0.0000	1131.0	57.65%	663.3	38.96%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-61	-1.423e+02	0.0000	1105.0	56.32%	642.4	37.73%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-61	-1.416e+02	0.0000	1206.0	61.47%	728.7	42.80%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-61	-1.416e+02	0.0000	777.0	39.60%	388.9	22.84%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-60	-1.401e+02	0.0000	1952.0	99.49%	1555.4	91.37%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-60	-1.389e+02	0.0000	1949.0	99.34%	1549.5	91.02%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-60	-1.386e+02	0.0000	686.0	34.96%	326.5	19.18%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-60	-1.382e+02	0.0000	1383.0	70.49%	890.3	52.30%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-59	-1.381e+02	0.0000	539.0	27.47%	228.8	13.44%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-59	-1.376e+02	0.0000	1249.0	63.66%	770.5	45.26%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-59	-1.367e+02	0.0000	646.0	32.93%	300.2	17.64%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-58	-1.353e+02	0.0000	1037.0	52.85%	595.0	34.95%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-58	-1.351e+02	0.0000	1232.0	62.79%	758.0	44.53%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-58	-1.341e+02	0.0000	1218.0	62.08%	747.9	43.93%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-57	-1.327e+02	0.0000	860.0	43.83%	458.4	26.93%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-57	-1.326e+02	0.0000	1092.0	55.66%	642.7	37.75%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-57	-1.323e+02	0.0000	1028.0	52.40%	590.1	34.66%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-57	-1.319e+02	0.0000	1115.0	56.83%	662.1	38.89%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-57	-1.317e+02	0.0000	852.0	43.43%	453.2	26.62%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-57	-1.315e+02	0.0000	895.0	45.62%	486.6	28.58%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-57	-1.313e+02	0.0000	1418.0	72.27%	931.8	54.73%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-56	-1.305e+02	0.0000	1954.0	99.59%	1568.2	92.12%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-56	-1.302e+02	0.0000	875.0	44.60%	472.2	27.74%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-56	-1.297e+02	0.0000	912.0	46.48%	501.2	29.44%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-56	-1.295e+02	0.0000	659.0	33.59%	315.5	18.53%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-56	-1.294e+02	0.0000	590.0	30.07%	268.5	15.77%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-56	-1.290e+02	0.0000	657.0	33.49%	314.4	18.47%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-55	-1.284e+02	0.0000	809.0	41.23%	424.4	24.93%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-55	-1.272e+02	0.0000	966.0	49.24%	546.6	32.11%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-54	-1.264e+02	0.0000	1031.0	52.55%	599.6	35.22%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-54	-1.260e+02	0.0000	1139.0	58.05%	689.4	40.49%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-54	-1.258e+02	0.0000	624.0	31.80%	294.1	17.28%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-54	-1.249e+02	0.0000	589.0	30.02%	271.1	15.92%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-53	-1.232e+02	0.0000	522.0	26.61%	228.7	13.43%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-53	-1.232e+02	0.0000	1182.0	60.24%	729.4	42.85%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-53	-1.230e+02	0.0000	1036.0	52.80%	608.0	35.71%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-53	-1.229e+02	0.0000	882.0	44.95%	485.7	28.53%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-53	-1.222e+02	0.0000	1058.0	53.92%	626.4	36.80%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-51	-1.196e+02	0.0000	793.0	40.42%	421.6	24.77%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-51	-1.194e+02	0.0000	755.0	38.48%	393.1	23.09%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-51	-1.190e+02	0.0000	640.0	32.62%	311.8	18.31%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-51	-1.185e+02	0.0000	590.0	30.07%	277.6	16.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-51	-1.181e+02	0.0000	591.0	30.12%	278.0	16.33%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-51	-1.179e+02	0.0000	650.0	33.13%	319.9	18.79%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-50	-1.156e+02	0.0000	952.0	48.52%	548.2	32.20%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-50	-1.155e+02	0.0000	1099.0	56.01%	668.9	39.29%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-49	-1.150e+02	0.0000	486.0	24.77%	211.7	12.44%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-49	-1.143e+02	0.0000	752.0	38.33%	396.4	23.28%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-49	-1.137e+02	0.0000	758.0	38.63%	401.9	23.61%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-48	-1.122e+02	0.0000	548.0	27.93%	254.7	14.96%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-48	-1.114e+02	0.0000	1260.0	64.22%	812.2	47.71%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-48	-1.113e+02	0.0000	1957.0	99.75%	1592.5	93.55%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-48	-1.112e+02	0.0000	825.0	42.05%	455.0	26.72%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-48	-1.109e+02	0.0000	698.0	35.58%	360.6	21.18%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-47	-1.099e+02	0.0000	790.0	40.27%	429.7	25.24%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-47	-1.097e+02	0.0000	632.0	32.21%	314.7	18.49%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-47	-1.094e+02	0.0000	507.0	25.84%	229.5	13.48%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-47	-1.092e+02	0.0000	753.0	38.38%	402.0	23.62%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-47	-1.089e+02	0.0000	836.0	42.61%	465.2	27.33%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-46	-1.077e+02	0.0000	560.0	28.54%	266.1	15.63%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-46	-1.067e+02	0.0000	980.0	49.95%	581.7	34.17%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-46	-1.066e+02	0.0000	1002.0	51.07%	599.8	35.23%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-45	-1.047e+02	0.0000	531.0	27.06%	249.4	14.65%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-44	-1.033e+02	0.0000	1185.0	60.40%	757.8	44.51%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-44	-1.026e+02	0.0000	549.0	27.98%	263.5	15.48%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-43	-1.010e+02	0.0000	1013.0	51.63%	615.9	36.18%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-43	-1.008e+02	0.0000	441.0	22.48%	193.7	11.38%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-43	-1.008e+02	0.0000	782.0	39.86%	433.2	25.44%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-43	-1.004e+02	0.0000	521.0	26.55%	246.9	14.50%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-42	-9.882e+01	0.0000	969.0	49.39%	582.3	34.21%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-42	-9.750e+01	0.0000	625.0	31.86%	322.0	18.91%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-41	-9.624e+01	0.0000	460.0	23.45%	209.2	12.29%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-41	-9.622e+01	0.0000	651.0	33.18%	341.6	20.07%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-41	-9.552e+01	0.0000	687.0	35.02%	368.1	21.62%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-40	-9.410e+01	0.0000	1948.0	99.29%	1586.3	93.18%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-40	-9.293e+01	0.0000	533.0	27.17%	261.5	15.36%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-40	-9.283e+01	0.0000	330.0	16.82%	130.7	7.68%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-40	-9.276e+01	0.0000	313.0	15.95%	120.1	7.06%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-39	-9.203e+01	0.0000	295.0	15.04%	110.8	6.51%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-39	-9.200e+01	0.0000	827.0	42.15%	478.2	28.09%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-39	-9.161e+01	0.0000	451.0	22.99%	207.2	12.17%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-38	-8.937e+01	0.0000	609.0	31.04%	318.1	18.69%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-38	-8.861e+01	0.0000	1958.0	99.80%	1614.2	94.82%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-37	-8.742e+01	0.0000	544.0	27.73%	274.2	16.11%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-37	-8.614e+01	0.0000	670.0	34.15%	366.5	21.53%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-37	-8.551e+01	0.0000	305.0	15.55%	120.4	7.07%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-37	-8.547e+01	0.0000	554.0	28.24%	283.7	16.66%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-36	-8.347e+01	0.0000	690.0	35.17%	384.1	22.57%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-36	-8.313e+01	0.0000	601.0	30.63%	319.7	18.78%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-35	-8.278e+01	0.0000	1134.0	57.80%	742.3	43.61%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-35	-8.259e+01	0.0000	485.0	24.72%	238.8	14.03%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-35	-8.158e+01	0.0000	367.0	18.71%	161.2	9.47%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-35	-8.073e+01	0.0000	494.0	25.18%	246.1	14.46%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-34	-8.002e+01	0.0000	640.0	32.62%	351.1	20.63%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-34	-7.971e+01	0.0000	352.0	17.94%	153.0	8.99%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-34	-7.937e+01	0.0000	674.0	34.35%	377.1	22.15%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-33	-7.738e+01	0.0000	388.0	19.78%	179.0	10.51%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-33	-7.709e+01	0.0000	383.0	19.52%	175.6	10.32%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-33	-7.698e+01	0.0000	358.0	18.25%	159.6	9.38%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-33	-7.638e+01	0.0000	420.0	21.41%	200.2	11.76%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-32	-7.472e+01	0.0000	389.0	19.83%	181.2	10.65%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-32	-7.434e+01	0.0000	367.0	18.71%	167.1	9.81%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-32	-7.393e+01	0.0000	368.0	18.76%	168.3	9.88%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-31	-7.352e+01	0.0000	561.0	28.59%	301.3	17.70%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-30	-7.042e+01	0.0000	822.0	41.90%	503.4	29.57%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-30	-6.992e+01	0.0000	622.0	31.70%	350.1	20.56%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-29	-6.907e+01	0.0000	533.0	27.17%	286.2	16.81%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-29	-6.885e+01	0.0000	259.0	13.20%	104.1	6.11%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-29	-6.881e+01	0.0000	513.0	26.15%	272.8	16.02%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-29	-6.835e+01	0.0000	595.0	30.33%	333.0	19.56%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-29	-6.791e+01	0.0000	402.0	20.49%	196.1	11.52%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-28	-6.585e+01	0.0000	360.0	18.35%	170.9	10.04%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-28	-6.585e+01	0.0000	360.0	18.35%	170.9	10.04%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-28	-6.522e+01	0.0000	423.0	21.56%	213.5	12.54%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-27	-6.424e+01	0.0000	324.0	16.51%	148.6	8.73%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-27	-6.390e+01	0.0000	447.0	22.78%	231.3	13.59%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-27	-6.361e+01	0.0000	261.0	13.30%	109.7	6.44%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-27	-6.309e+01	0.0000	512.0	26.10%	278.1	16.34%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-27	-6.238e+01	0.0000	323.0	16.46%	149.8	8.80%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-26	-6.170e+01	0.0000	650.0	33.13%	382.2	22.45%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-25	-5.927e+01	0.0000	346.0	17.64%	168.0	9.87%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-25	-5.914e+01	0.0000	415.0	21.15%	214.4	12.59%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-24	-5.624e+01	0.0000	343.0	17.48%	168.6	9.91%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-24	-5.614e+01	0.0000	305.0	15.55%	143.6	8.44%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-24	-5.533e+01	0.0000	634.0	32.31%	379.1	22.27%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-23	-5.487e+01	0.0000	280.0	14.27%	128.8	7.57%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-23	-5.361e+01	0.0000	339.0	17.28%	168.7	9.91%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-21	-4.932e+01	0.0000	168.0	8.56%	64.0	3.76%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-20	-4.783e+01	0.0000	242.0	12.33%	110.0	6.46%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-20	-4.728e+01	0.0000	444.0	22.63%	249.7	14.67%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-20	-4.699e+01	0.0000	330.0	16.82%	169.4	9.95%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-20	-4.670e+01	0.0000	294.0	14.98%	145.1	8.52%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-18	-4.289e+01	0.0000	285.0	14.53%	143.1	8.41%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-18	-4.195e+01	0.0000	135.0	6.88%	50.3	2.95%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-17	-4.089e+01	0.0000	295.0	15.04%	153.0	8.98%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-17	-4.042e+01	0.0000	242.0	12.33%	117.5	6.90%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-17	-4.042e+01	0.0000	242.0	12.33%	117.5	6.90%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-16	-3.862e+01	0.0000	330.0	16.82%	179.2	10.52%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-16	-3.721e+01	0.0000	237.0	12.08%	117.7	6.91%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-16	-3.707e+01	0.0000	217.0	11.06%	104.3	6.13%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-15	-3.633e+01	0.0000	154.0	7.85%	65.8	3.87%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-15	-3.538e+01	0.0000	243.0	12.39%	123.3	7.25%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-14	-3.354e+01	0.0000	259.0	13.20%	136.3	8.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-13	-3.111e+01	0.0000	105.0	5.35%	40.3	2.37%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-13	-3.052e+01	0.0000	193.0	9.84%	96.0	5.64%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-13	-3.014e+01	0.0000	234.0	11.93%	123.2	7.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-12	-2.990e+01	0.0000	288.0	14.68%	161.7	9.50%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-12	-2.932e+01	0.0000	234.0	11.93%	124.8	7.33%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-12	-2.911e+01	0.0000	141.0	7.19%	63.1	3.71%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-12	-2.883e+01	0.0000	139.0	7.08%	62.1	3.65%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-12	-2.878e+01	0.0000	104.0	5.30%	41.5	2.44%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-11	-2.710e+01	0.0000	122.0	6.22%	53.1	3.12%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-10	-2.426e+01	0.0000	157.0	8.00%	78.4	4.60%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-10	-2.310e+01	0.0000	215.0	10.96%	119.8	7.03%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-9	-2.221e+01	0.0000	57.0	2.91%	19.2	1.13%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-9	-2.213e+01	0.0000	55.0	2.80%	18.7	1.10%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-8	-1.982e+01	0.0000	25.0	1.27%	5.2	0.31%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-8	-1.978e+01	0.0000	285.0	14.53%	175.2	10.29%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-8	-1.959e+01	0.0000	165.0	8.41%	89.9	5.28%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-8	-1.846e+01	0.0000	170.0	8.66%	95.0	5.58%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-7	-1.653e+01	0.0000	58.0	2.96%	23.2	1.36%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-7	-1.640e+01	0.0000	202.0	10.30%	120.3	7.06%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-6	-1.513e+01	0.0000	218.0	11.11%	134.2	7.88%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-6	-1.449e+01	0.0000	67.0	3.41%	30.4	1.78%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-6	-1.393e+01	0.0000	106.0	5.40%	56.8	3.34%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-5	-1.284e+01	0.0000	101.0	5.15%	54.9	3.23%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-5	-1.274e+01	0.0000	111.0	5.66%	61.0	3.58%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-5	-1.203e+01	0.0000	153.0	7.80%	92.5	5.43%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-4	-1.114e+01	0.0000	46.0	2.34%	20.6	1.21%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.051e+01	0.0000	67.0	3.41%	34.2	2.01%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-4	-1.023e+01	0.0000	20.0	1.02%	6.8	0.40%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-3	-7.942e+00	0.0004	35.0	1.78%	16.1	0.94%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-6.171e+00	0.0021	82.0	4.18%	51.7	3.03%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-5.932e+00	0.0027	58.0	2.96%	34.2	2.01%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-2.706e+00	0.0670	13.0	0.66%	7.7	0.45%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.808e+00	0.1641	32.0	1.63%	23.4	1.37%