Information for 3-TTTTAAAA (Motif 6)

A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T C G T A C G T A C G T A C G T A
p-value:1e-124
log p-value:-2.866e+02
Information Content per bp:1.956
Number of Target Sequences with motif1144.0
Percentage of Target Sequences with motif58.31%
Number of Background Sequences with motif547.1
Percentage of Background Sequences with motif32.14%
Average Position of motif in Targets3196.3 +/- 3760.0bp
Average Position of motif in Background1975.8 +/- 2150.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)2.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TTTTAAAA---
-TTTGAAACCG
 A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAA
NATTCAAAT
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAA-
NTTTTATDRG
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

HOXD11/MA0908.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAA-
NTTTTACGAC
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAA----
CCGTATTATAAACAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAA--
NTTTTACGAGN
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

HOXC12/MA0906.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAA--
NTTTTACGACC
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T A C G T
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAAAA-----
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAA-
NTTTTACGAC
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAA--
NTTTTACGACT
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C G T A A C G T A C G T
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T