Information for 3-ARCAGAAAGAGA (Motif 5)

C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C G T A C G T A C G T A T G C C G A T A T C G A G T C A G C T
p-value:1e-124
log p-value:-2.867e+02
Information Content per bp:1.825
Number of Target Sequences with motif1557.0
Percentage of Target Sequences with motif79.36%
Number of Background Sequences with motif913.0
Percentage of Background Sequences with motif53.63%
Average Position of motif in Targets3493.0 +/- 3901.1bp
Average Position of motif in Background1781.0 +/- 1757.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)2.54
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1/MA0508.2/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ARCAGAAAGAGA
--GTGAAAGTGA
 C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A
A C G T A C G T C T A G C G A T A C T G C G T A G C T A G T C A C T A G A G C T C T A G C G T A

IRF1/MA0050.2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ARCAGAAAGAGA--------
AAANNGAAAGTGAAAGTAAAN
 A C G T C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:ARCAGAAAGAGA----
----GAAAGTGAAAGT
 C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:ARCAGAAAGAGA----
----GAAACTGAAACT
 C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

IRF7/MA0772.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ARCAGAAAGAGA----
--ACGAAAGCGAAAGT
 C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T

IRF2/MA0051.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ARCAGAAAGAGA---------
---GGAAAGCGAAACCAAAAC
 C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:ARCAGAAAGAGA----
----GRAASTGAAAST
 C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T C A G G C T A C G T A T A C G G A C T T C A G T C G A C T G A C G T A T A C G G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ARCAGAAAGAGA----
----GAAAGTGAAAGT
 C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:ARCAGAAAGAGA----
----GAAASYGAAASY
 C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C T G A C G T A T A C G G A C T T C A G T C G A G T C A T G C A T A C G A G C T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ARCAGAAAGAGA
GGAAANTGAAACTNA
 A C G T A C G T A C G T C T G A T C A G A T G C G C T A T A C G C G T A C G T A C G T A A C T G T G C A T C A G T G C A
T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A