Information for 17-GGCAACAAAA (Motif 40)

A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C T G A G T C A G T C
p-value:1e-88
log p-value:-2.036e+02
Information Content per bp:1.980
Number of Target Sequences with motif1890.0
Percentage of Target Sequences with motif96.33%
Number of Background Sequences with motif1386.2
Percentage of Background Sequences with motif81.43%
Average Position of motif in Targets3564.8 +/- 4134.6bp
Average Position of motif in Background1913.5 +/- 1927.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)4.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0013.1_Cdx2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGCAACAAAA---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGCAACAAAA
AAGCCATAAAA
 A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCAACAAAA-
GGTAATAAAAA
 A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGCAACAAAA-
-GTCATAAAAN
 A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGCAACAAAA-
-GCAATAAAAA
 A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C G T
A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGCAACAAAA-----
AATGCAATAAAATTTAT
 A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGCAACAAAA----
AGAGCCATAAAATTCG
 A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GGCAACAAAA
---AACAAT-
 A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCAACAAAA----
TAGGTAATAAAATTCA
 A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGCAACAAAA---
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A