Information for 11-TGGGTCGA (Motif 33)

A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G C G T A A G T C A G T C G T A C C G T A
p-value:1e-93
log p-value:-2.163e+02
Information Content per bp:1.955
Number of Target Sequences with motif1519.0
Percentage of Target Sequences with motif77.42%
Number of Background Sequences with motif937.5
Percentage of Background Sequences with motif55.07%
Average Position of motif in Targets3736.6 +/- 4092.4bp
Average Position of motif in Background1906.1 +/- 1755.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)2.46
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TGGGTCGA----
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TGGGTCGA---
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

RORC/MA1151.1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TGGGTCGA
ATAAGTAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TGGGTCGA
TATAAGTAGGTCAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGGTCGA
-AGGTCA-
 A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGGTCGA-
ATGGGGTGAT
 A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A A C G T
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGGGTCGA--
CGTGGGTGGTCC
 A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A A C G T A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

SREBF1/MA0595.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGGGTCGA-
GTGGGGTGAT
 A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A A C G T
T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T

PB0179.1_Sp100_2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGGGTCGA-------
TCCGTCGCTTAAAAG
 A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGGGTCGA
AAYTAGGTCA-
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C A C T G C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T