Information for 2-NCGAGCRA (Motif 3)

C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A
Reverse Opposite:
G A C T G A C T C A T G G A T C A G C T T G A C A T C G G A C T
p-value:1e-144
log p-value:-3.326e+02
Information Content per bp:1.433
Number of Target Sequences with motif1415.0
Percentage of Target Sequences with motif72.12%
Number of Background Sequences with motif753.3
Percentage of Background Sequences with motif43.50%
Average Position of motif in Targets3627.7 +/- 3322.3bp
Average Position of motif in Background2124.9 +/- 1853.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcfl5/MA0632.1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---NCGAGCRA
GGCACGTGCC-
 A C G T A C G T A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----NCGAGCRA----
ATTTACGACAAATAGC
 A C G T A C G T A C G T A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A A C G T A C G T A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----NCGAGCRA
GAGSCCGAGC--
 A C G T A C G T A C G T A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----NCGAGCRA---
TTGACCGAGAATTCC
 A C G T A C G T A C G T A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0199.1_Zfp161_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-NCGAGCRA-----
GCCGCGCAGTGCGT
 A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

HIF1A/MA1106.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--NCGAGCRA
GTACGTGCCC
 A C G T A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

PB0138.1_Irf4_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----NCGAGCRA---
GNNACCGAGAATNNN
 A C G T A C G T A C G T A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PB0108.1_Atf1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----NCGAGCRA-
GAATGACGAATAAC
 A C G T A C G T A C G T A C G T A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-NCGAGCRA
TACGTGCV-
 A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------NCGAGCRA-
ATAAAGGCGCGCGAT
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C A C T G T C G A C T A G G T A C C T G A C T G A A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T