Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1721)	% of Background Sequences with Motif
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-147	-3.401e+02	0.0000	1812.0	92.35%	1172.3	68.13%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-133	-3.066e+02	0.0000	1538.0	78.39%	887.0	51.55%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-132	-3.040e+02	0.0000	1725.0	87.92%	1091.5	63.44%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-131	-3.018e+02	0.0000	1443.0	73.55%	798.2	46.39%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-130	-3.008e+02	0.0000	1668.0	85.02%	1028.5	59.77%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-125	-2.891e+02	0.0000	1025.0	52.24%	460.3	26.75%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-125	-2.882e+02	0.0000	1487.0	75.79%	851.9	49.51%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-124	-2.868e+02	0.0000	1783.0	90.88%	1177.8	68.45%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-123	-2.845e+02	0.0000	1489.0	75.89%	856.8	49.79%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-121	-2.808e+02	0.0000	1628.0	82.98%	1001.6	58.21%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-120	-2.785e+02	0.0000	1571.0	80.07%	943.0	54.81%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-119	-2.761e+02	0.0000	1596.0	81.35%	971.4	56.45%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-118	-2.731e+02	0.0000	1455.0	74.16%	833.8	48.46%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-118	-2.730e+02	0.0000	1765.0	89.96%	1166.7	67.81%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-118	-2.725e+02	0.0000	1817.0	92.61%	1234.6	71.75%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-117	-2.713e+02	0.0000	1789.0	91.18%	1198.2	69.64%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-117	-2.711e+02	0.0000	1778.0	90.62%	1184.1	68.81%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-117	-2.700e+02	0.0000	1822.0	92.86%	1243.2	72.25%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-117	-2.697e+02	0.0000	1744.0	88.89%	1143.0	66.43%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-116	-2.686e+02	0.0000	1620.0	82.57%	1003.3	58.31%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-114	-2.635e+02	0.0000	1783.0	90.88%	1198.0	69.62%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-114	-2.633e+02	0.0000	1872.0	95.41%	1321.7	76.81%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-114	-2.633e+02	0.0000	1624.0	82.77%	1012.5	58.85%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-114	-2.626e+02	0.0000	1651.0	84.15%	1042.0	60.56%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-113	-2.613e+02	0.0000	1458.0	74.31%	846.9	49.22%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-113	-2.609e+02	0.0000	1445.0	73.65%	834.3	48.49%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-112	-2.598e+02	0.0000	1720.0	87.67%	1123.1	65.27%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-112	-2.594e+02	0.0000	1602.0	81.65%	992.1	57.66%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-112	-2.593e+02	0.0000	1832.0	93.37%	1266.1	73.58%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-112	-2.582e+02	0.0000	1678.0	85.52%	1076.4	62.56%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-111	-2.571e+02	0.0000	1642.0	83.69%	1037.4	60.29%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-111	-2.558e+02	0.0000	1810.0	92.25%	1240.0	72.06%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-110	-2.548e+02	0.0000	1757.0	89.55%	1172.0	68.12%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-110	-2.537e+02	0.0000	1600.0	81.55%	995.2	57.84%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-109	-2.529e+02	0.0000	1644.0	83.79%	1043.4	60.64%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-109	-2.528e+02	0.0000	1414.0	72.07%	812.8	47.24%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-109	-2.527e+02	0.0000	1525.0	77.73%	919.5	53.44%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-109	-2.523e+02	0.0000	1457.0	74.26%	853.4	49.60%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-108	-2.506e+02	0.0000	1713.0	87.31%	1123.6	65.30%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-108	-2.503e+02	0.0000	1788.0	91.13%	1215.1	70.62%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-108	-2.503e+02	0.0000	1311.0	66.82%	721.8	41.95%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-108	-2.503e+02	0.0000	1417.0	72.22%	818.0	47.54%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-108	-2.502e+02	0.0000	1379.0	70.29%	782.6	45.48%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-108	-2.489e+02	0.0000	1776.0	90.52%	1201.2	69.81%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-107	-2.476e+02	0.0000	1561.0	79.56%	960.6	55.83%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-107	-2.473e+02	0.0000	1547.0	78.85%	946.4	55.00%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-106	-2.453e+02	0.0000	1305.0	66.51%	720.1	41.85%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-105	-2.425e+02	0.0000	1761.0	89.76%	1188.8	69.09%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-105	-2.424e+02	0.0000	1356.0	69.11%	768.0	44.63%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-104	-2.414e+02	0.0000	1843.0	93.93%	1297.6	75.41%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-104	-2.409e+02	0.0000	1702.0	86.75%	1119.2	65.04%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-104	-2.409e+02	0.0000	1862.0	94.90%	1325.4	77.03%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-104	-2.408e+02	0.0000	1759.0	89.65%	1187.9	69.04%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-103	-2.385e+02	0.0000	1815.0	92.51%	1261.1	73.29%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-103	-2.384e+02	0.0000	1749.0	89.14%	1177.4	68.43%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-103	-2.372e+02	0.0000	1839.0	93.73%	1295.6	75.30%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-102	-2.366e+02	0.0000	1439.0	73.34%	850.7	49.44%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-102	-2.362e+02	0.0000	1815.0	92.51%	1263.6	73.44%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-102	-2.360e+02	0.0000	1802.0	91.85%	1246.8	72.46%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-102	-2.358e+02	0.0000	1624.0	82.77%	1037.0	60.27%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-102	-2.356e+02	0.0000	1804.0	91.95%	1249.1	72.59%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-102	-2.355e+02	0.0000	1278.0	65.14%	705.4	40.99%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-101	-2.338e+02	0.0000	1595.0	81.29%	1008.4	58.60%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-101	-2.335e+02	0.0000	1589.0	80.99%	1002.6	58.27%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-101	-2.330e+02	0.0000	1824.0	92.97%	1278.9	74.33%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-101	-2.328e+02	0.0000	1932.0	98.47%	1450.1	84.28%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-100	-2.323e+02	0.0000	1673.0	85.27%	1094.4	63.60%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-100	-2.322e+02	0.0000	1440.0	73.39%	855.6	49.72%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-100	-2.321e+02	0.0000	1464.0	74.62%	878.6	51.06%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-100	-2.320e+02	0.0000	1662.0	84.71%	1082.6	62.92%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-100	-2.318e+02	0.0000	1597.0	81.40%	1012.2	58.83%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-100	-2.315e+02	0.0000	1343.0	68.45%	766.1	44.52%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-100	-2.305e+02	0.0000	1866.0	95.11%	1340.3	77.90%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-99	-2.299e+02	0.0000	1530.0	77.98%	945.5	54.95%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-99	-2.295e+02	0.0000	1568.0	79.92%	984.7	57.23%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-99	-2.291e+02	0.0000	1891.0	96.38%	1380.6	80.24%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-99	-2.284e+02	0.0000	1479.0	75.38%	896.5	52.10%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-98	-2.272e+02	0.0000	1455.0	74.16%	874.5	50.82%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-98	-2.270e+02	0.0000	1820.0	92.76%	1278.9	74.32%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-98	-2.267e+02	0.0000	1822.0	92.86%	1281.8	74.49%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-98	-2.262e+02	0.0000	1675.0	85.37%	1102.2	64.06%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-97	-2.253e+02	0.0000	1202.0	61.26%	649.1	37.72%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-97	-2.241e+02	0.0000	1341.0	68.35%	771.7	44.85%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-97	-2.240e+02	0.0000	1454.0	74.11%	876.5	50.94%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-96	-2.232e+02	0.0000	1570.0	80.02%	992.7	57.69%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-96	-2.232e+02	0.0000	1384.0	70.54%	811.8	47.18%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-96	-2.231e+02	0.0000	1278.0	65.14%	716.1	41.62%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-96	-2.224e+02	0.0000	1750.0	89.19%	1193.1	69.34%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-96	-2.215e+02	0.0000	1464.0	74.62%	888.0	51.61%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-95	-2.204e+02	0.0000	1307.0	66.62%	744.5	43.27%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-95	-2.204e+02	0.0000	1707.0	87.00%	1144.7	66.53%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-95	-2.197e+02	0.0000	1341.0	68.35%	775.3	45.06%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-95	-2.194e+02	0.0000	1714.0	87.36%	1153.1	67.01%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-94	-2.187e+02	0.0000	1557.0	79.36%	983.5	57.16%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-94	-2.183e+02	0.0000	1892.0	96.43%	1391.8	80.89%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-94	-2.169e+02	0.0000	1911.0	97.40%	1424.3	82.78%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-94	-2.168e+02	0.0000	1883.0	95.97%	1378.7	80.12%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-94	-2.165e+02	0.0000	1620.0	82.57%	1051.1	61.09%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-93	-2.162e+02	0.0000	1826.0	93.07%	1296.9	75.37%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-93	-2.161e+02	0.0000	1844.0	93.99%	1321.9	76.82%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-93	-2.157e+02	0.0000	1786.0	91.03%	1244.2	72.31%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-93	-2.154e+02	0.0000	1852.0	94.39%	1333.3	77.49%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-92	-2.141e+02	0.0000	1854.0	94.50%	1337.4	77.73%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-92	-2.138e+02	0.0000	1787.0	91.08%	1247.9	72.52%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-92	-2.138e+02	0.0000	1567.0	79.87%	998.1	58.01%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-92	-2.133e+02	0.0000	1542.0	78.59%	973.7	56.59%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-92	-2.132e+02	0.0000	1812.0	92.35%	1280.7	74.43%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-92	-2.132e+02	0.0000	1510.0	76.96%	941.6	54.72%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-92	-2.129e+02	0.0000	1730.0	88.18%	1178.4	68.49%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-92	-2.119e+02	0.0000	1829.0	93.22%	1304.8	75.83%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-91	-2.117e+02	0.0000	1940.0	98.88%	1484.1	86.25%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-91	-2.108e+02	0.0000	1335.0	68.04%	778.4	45.24%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-91	-2.108e+02	0.0000	1922.0	97.96%	1449.6	84.24%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-91	-2.103e+02	0.0000	1497.0	76.30%	931.7	54.15%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-91	-2.099e+02	0.0000	1595.0	81.29%	1031.9	59.97%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-90	-2.095e+02	0.0000	1704.0	86.85%	1151.1	66.90%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-90	-2.086e+02	0.0000	1153.0	58.77%	623.6	36.24%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-90	-2.080e+02	0.0000	1652.0	84.20%	1094.4	63.61%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-90	-2.074e+02	0.0000	1873.0	95.46%	1371.3	79.70%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-89	-2.068e+02	0.0000	1639.0	83.54%	1081.8	62.87%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-89	-2.064e+02	0.0000	1274.0	64.93%	729.0	42.37%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-89	-2.062e+02	0.0000	1858.0	94.70%	1350.7	78.50%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-89	-2.050e+02	0.0000	1079.0	54.99%	566.2	32.90%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-88	-2.047e+02	0.0000	1474.0	75.13%	914.8	53.16%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-88	-2.041e+02	0.0000	1797.0	91.59%	1269.6	73.78%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-88	-2.040e+02	0.0000	1389.0	70.80%	834.6	48.50%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-88	-2.040e+02	0.0000	1465.0	74.67%	906.0	52.66%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-88	-2.028e+02	0.0000	1669.0	85.07%	1118.4	65.00%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-88	-2.027e+02	0.0000	1611.0	82.11%	1055.0	61.32%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-87	-2.025e+02	0.0000	1345.0	68.55%	795.1	46.21%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-87	-2.024e+02	0.0000	1555.0	79.26%	997.2	57.95%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-86	-1.996e+02	0.0000	1637.0	83.44%	1086.3	63.13%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-86	-1.991e+02	0.0000	1922.0	97.96%	1459.3	84.81%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-86	-1.987e+02	0.0000	1565.0	79.77%	1011.6	58.79%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-85	-1.978e+02	0.0000	1311.0	66.82%	769.1	44.70%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-85	-1.976e+02	0.0000	1343.0	68.45%	798.8	46.42%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-85	-1.976e+02	0.0000	1741.0	88.74%	1206.8	70.14%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-85	-1.973e+02	0.0000	1886.0	96.13%	1400.3	81.38%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-85	-1.969e+02	0.0000	1757.0	89.55%	1226.6	71.29%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-85	-1.966e+02	0.0000	1906.0	97.15%	1433.5	83.31%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-85	-1.965e+02	0.0000	1606.0	81.86%	1056.3	61.39%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-85	-1.959e+02	0.0000	1794.0	91.44%	1273.6	74.02%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-85	-1.957e+02	0.0000	1592.0	81.14%	1042.3	60.57%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-84	-1.956e+02	0.0000	1066.0	54.33%	564.8	32.82%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-84	-1.954e+02	0.0000	1191.0	60.70%	667.1	38.77%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-84	-1.948e+02	0.0000	1376.0	70.13%	831.2	48.31%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-84	-1.947e+02	0.0000	1050.0	53.52%	552.5	32.11%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-84	-1.945e+02	0.0000	1118.0	56.98%	607.0	35.28%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-83	-1.934e+02	0.0000	969.0	49.39%	490.0	28.48%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-83	-1.929e+02	0.0000	1670.0	85.12%	1129.7	65.66%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-83	-1.929e+02	0.0000	1914.0	97.55%	1450.7	84.31%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-83	-1.928e+02	0.0000	1391.0	70.90%	847.8	49.27%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-83	-1.913e+02	0.0000	1177.0	59.99%	659.3	38.31%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-82	-1.910e+02	0.0000	1469.0	74.87%	923.1	53.65%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-82	-1.903e+02	0.0000	1075.0	54.79%	576.5	33.50%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-82	-1.899e+02	0.0000	1890.0	96.33%	1413.6	82.15%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-82	-1.894e+02	0.0000	1500.0	76.45%	955.1	55.51%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-81	-1.886e+02	0.0000	1394.0	71.05%	854.5	49.66%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-81	-1.876e+02	0.0000	1009.0	51.43%	526.7	30.61%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-81	-1.876e+02	0.0000	982.0	50.05%	505.0	29.35%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-81	-1.872e+02	0.0000	1463.0	74.57%	921.8	53.57%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-81	-1.871e+02	0.0000	1317.0	67.13%	785.2	45.63%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-81	-1.866e+02	0.0000	1879.0	95.77%	1399.0	81.31%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-81	-1.866e+02	0.0000	1493.0	76.10%	951.5	55.30%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-80	-1.865e+02	0.0000	1906.0	97.15%	1442.6	83.84%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-80	-1.864e+02	0.0000	1383.0	70.49%	846.6	49.20%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-80	-1.863e+02	0.0000	1461.0	74.46%	920.8	53.52%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-80	-1.859e+02	0.0000	1391.0	70.90%	854.2	49.64%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-80	-1.859e+02	0.0000	1943.0	99.03%	1512.5	87.90%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-80	-1.858e+02	0.0000	1480.0	75.43%	939.1	54.58%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-80	-1.858e+02	0.0000	1915.0	97.60%	1458.1	84.74%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-80	-1.843e+02	0.0000	1807.0	92.10%	1301.0	75.61%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-79	-1.832e+02	0.0000	977.0	49.80%	505.8	29.40%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-79	-1.830e+02	0.0000	1218.0	62.08%	702.1	40.80%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-78	-1.816e+02	0.0000	1398.0	71.25%	866.0	50.33%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-78	-1.813e+02	0.0000	1892.0	96.43%	1424.4	82.78%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-78	-1.812e+02	0.0000	1008.0	51.38%	531.4	30.88%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-78	-1.812e+02	0.0000	1362.0	69.42%	832.9	48.41%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-78	-1.796e+02	0.0000	1236.0	63.00%	721.2	41.91%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-77	-1.796e+02	0.0000	1917.0	97.71%	1467.7	85.30%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-77	-1.795e+02	0.0000	834.0	42.51%	401.9	23.36%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-77	-1.786e+02	0.0000	1927.0	98.22%	1486.3	86.38%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-76	-1.772e+02	0.0000	1340.0	68.30%	816.3	47.44%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-76	-1.764e+02	0.0000	1898.0	96.74%	1438.6	83.61%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-76	-1.762e+02	0.0000	886.0	45.16%	442.8	25.74%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-76	-1.760e+02	0.0000	1311.0	66.82%	791.5	46.00%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-76	-1.759e+02	0.0000	1881.0	95.87%	1412.5	82.09%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-75	-1.748e+02	0.0000	1276.0	65.04%	761.4	44.25%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-75	-1.742e+02	0.0000	1898.0	96.74%	1440.7	83.73%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-75	-1.741e+02	0.0000	1413.0	72.02%	887.7	51.59%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-75	-1.739e+02	0.0000	1570.0	80.02%	1042.1	60.56%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-75	-1.728e+02	0.0000	1277.0	65.09%	764.6	44.43%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-74	-1.707e+02	0.0000	1270.0	64.73%	760.2	44.18%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-74	-1.705e+02	0.0000	1255.0	63.97%	747.4	43.44%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-73	-1.700e+02	0.0000	1651.0	84.15%	1132.1	65.79%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-73	-1.699e+02	0.0000	1071.0	54.59%	592.1	34.41%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-73	-1.697e+02	0.0000	1147.0	58.46%	655.2	38.08%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-73	-1.685e+02	0.0000	922.0	46.99%	476.8	27.71%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-73	-1.684e+02	0.0000	707.0	36.03%	320.1	18.60%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-72	-1.680e+02	0.0000	1206.0	61.47%	707.5	41.12%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-72	-1.671e+02	0.0000	1092.0	55.66%	612.7	35.61%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-72	-1.667e+02	0.0000	912.0	46.48%	470.4	27.34%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-72	-1.666e+02	0.0000	1383.0	70.49%	867.8	50.43%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-72	-1.663e+02	0.0000	1276.0	65.04%	770.6	44.79%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-71	-1.656e+02	0.0000	1232.0	62.79%	733.0	42.60%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-71	-1.639e+02	0.0000	1368.0	69.72%	856.4	49.77%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-71	-1.636e+02	0.0000	1182.0	60.24%	691.9	40.21%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-70	-1.635e+02	0.0000	1242.0	63.30%	743.5	43.21%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-70	-1.630e+02	0.0000	1134.0	57.80%	651.7	37.87%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-70	-1.627e+02	0.0000	1241.0	63.25%	743.4	43.20%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-70	-1.620e+02	0.0000	1952.0	99.49%	1553.4	90.28%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-70	-1.613e+02	0.0000	1857.0	94.65%	1391.9	80.89%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-70	-1.612e+02	0.0000	1254.0	63.91%	756.5	43.97%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-69	-1.602e+02	0.0000	798.0	40.67%	391.7	22.76%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-69	-1.601e+02	0.0000	1875.0	95.57%	1418.7	82.45%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-69	-1.598e+02	0.0000	860.0	43.83%	437.4	25.42%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-68	-1.579e+02	0.0000	1077.0	54.89%	610.0	35.45%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-68	-1.576e+02	0.0000	1435.0	73.14%	926.4	53.84%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-67	-1.555e+02	0.0000	1031.0	52.55%	574.3	33.38%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-67	-1.550e+02	0.0000	920.0	46.89%	487.2	28.31%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-67	-1.548e+02	0.0000	1035.0	52.75%	578.3	33.61%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-67	-1.544e+02	0.0000	1249.0	63.66%	759.7	44.15%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-66	-1.541e+02	0.0000	1155.0	58.87%	678.7	39.44%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-66	-1.539e+02	0.0000	1206.0	61.47%	722.2	41.97%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-66	-1.536e+02	0.0000	1085.0	55.30%	620.6	36.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-66	-1.532e+02	0.0000	1260.0	64.22%	770.7	44.79%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-66	-1.531e+02	0.0000	821.0	41.85%	414.8	24.11%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-66	-1.527e+02	0.0000	1934.0	98.57%	1522.2	88.46%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-65	-1.506e+02	0.0000	1218.0	62.08%	736.7	42.82%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-65	-1.502e+02	0.0000	1131.0	57.65%	662.6	38.51%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-64	-1.487e+02	0.0000	1058.0	53.92%	603.2	35.06%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-64	-1.483e+02	0.0000	1223.0	62.33%	743.4	43.20%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-63	-1.469e+02	0.0000	933.0	47.55%	505.3	29.36%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-63	-1.467e+02	0.0000	1961.0	99.95%	1593.0	92.58%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-63	-1.453e+02	0.0000	1210.0	61.67%	735.9	42.77%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-62	-1.445e+02	0.0000	809.0	41.23%	413.8	24.05%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-62	-1.439e+02	0.0000	855.0	43.58%	448.5	26.06%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-61	-1.427e+02	0.0000	1418.0	72.27%	927.2	53.88%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-61	-1.426e+02	0.0000	852.0	43.43%	447.4	26.00%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-61	-1.418e+02	0.0000	1801.0	91.79%	1337.6	77.74%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-61	-1.406e+02	0.0000	1954.0	99.59%	1576.0	91.59%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-60	-1.403e+02	0.0000	1935.0	98.62%	1535.2	89.22%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-60	-1.397e+02	0.0000	758.0	38.63%	380.2	22.10%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-60	-1.393e+02	0.0000	1330.0	67.79%	849.7	49.38%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-58	-1.356e+02	0.0000	1139.0	58.05%	685.2	39.82%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-58	-1.352e+02	0.0000	1050.0	53.52%	611.4	35.53%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-57	-1.333e+02	0.0000	952.0	48.52%	534.6	31.07%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-57	-1.323e+02	0.0000	1099.0	56.01%	656.0	38.12%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-57	-1.316e+02	0.0000	1028.0	52.40%	597.9	34.75%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-57	-1.316e+02	0.0000	1360.0	69.32%	886.6	51.53%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-56	-1.302e+02	0.0000	761.0	38.79%	391.8	22.77%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-56	-1.300e+02	0.0000	825.0	42.05%	439.5	25.54%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-56	-1.293e+02	0.0000	742.0	37.82%	378.8	22.02%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-56	-1.290e+02	0.0000	777.0	39.60%	404.5	23.51%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-55	-1.276e+02	0.0000	1115.0	56.83%	674.9	39.22%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-54	-1.264e+02	0.0000	875.0	44.60%	482.0	28.01%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-54	-1.263e+02	0.0000	646.0	32.93%	312.4	18.15%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-54	-1.258e+02	0.0000	1072.0	54.64%	640.7	37.23%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-54	-1.248e+02	0.0000	1055.0	53.77%	627.7	36.48%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-53	-1.239e+02	0.0000	591.0	30.12%	276.1	16.05%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-53	-1.235e+02	0.0000	1148.0	58.51%	707.1	41.09%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-53	-1.235e+02	0.0000	931.0	47.45%	529.0	30.74%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-53	-1.232e+02	0.0000	895.0	45.62%	500.6	29.09%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-53	-1.222e+02	0.0000	886.0	45.16%	494.0	28.71%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-52	-1.220e+02	0.0000	1949.0	99.34%	1580.3	91.84%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-52	-1.219e+02	0.0000	698.0	35.58%	354.0	20.57%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-52	-1.216e+02	0.0000	946.0	48.22%	542.9	31.55%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-52	-1.207e+02	0.0000	1037.0	52.85%	618.0	35.91%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-52	-1.200e+02	0.0000	1036.0	52.80%	617.9	35.91%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-52	-1.197e+02	0.0000	836.0	42.61%	459.0	26.67%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-51	-1.185e+02	0.0000	980.0	49.95%	573.7	33.34%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-51	-1.183e+02	0.0000	650.0	33.13%	322.3	18.73%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-51	-1.182e+02	0.0000	1957.0	99.75%	1603.4	93.18%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-51	-1.176e+02	0.0000	882.0	44.95%	496.3	28.84%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-51	-1.175e+02	0.0000	1013.0	51.63%	601.6	34.96%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-50	-1.153e+02	0.0000	539.0	27.47%	248.6	14.45%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-50	-1.152e+02	0.0000	753.0	38.38%	400.6	23.28%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-49	-1.150e+02	0.0000	640.0	32.62%	318.8	18.53%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-49	-1.145e+02	0.0000	659.0	33.59%	332.2	19.30%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-49	-1.142e+02	0.0000	646.0	32.93%	323.1	18.78%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-49	-1.140e+02	0.0000	389.0	19.83%	153.5	8.92%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-49	-1.133e+02	0.0000	749.0	38.18%	399.2	23.20%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-48	-1.125e+02	0.0000	624.0	31.80%	309.9	18.01%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-48	-1.125e+02	0.0000	1105.0	56.32%	684.2	39.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-48	-1.111e+02	0.0000	632.0	32.21%	316.4	18.39%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-47	-1.097e+02	0.0000	640.0	32.62%	323.8	18.82%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-47	-1.093e+02	0.0000	969.0	49.39%	575.5	33.45%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-47	-1.088e+02	0.0000	752.0	38.33%	406.5	23.62%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-46	-1.070e+02	0.0000	793.0	40.42%	439.1	25.52%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-46	-1.060e+02	0.0000	686.0	34.96%	360.3	20.94%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-45	-1.055e+02	0.0000	651.0	33.18%	335.3	19.49%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-45	-1.047e+02	0.0000	441.0	22.48%	192.6	11.19%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-45	-1.037e+02	0.0000	1002.0	51.07%	609.7	35.43%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-44	-1.035e+02	0.0000	602.0	30.68%	302.6	17.59%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-44	-1.027e+02	0.0000	1948.0	99.29%	1595.1	92.70%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-43	-1.008e+02	0.0000	494.0	25.18%	230.1	13.37%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-42	-9.886e+01	0.0000	590.0	30.07%	298.6	17.36%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-42	-9.877e+01	0.0000	560.0	28.54%	277.6	16.14%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-42	-9.856e+01	0.0000	827.0	42.15%	475.6	27.64%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-42	-9.814e+01	0.0000	589.0	30.02%	298.7	17.36%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-42	-9.785e+01	0.0000	590.0	30.07%	299.3	17.39%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-41	-9.668e+01	0.0000	601.0	30.63%	309.0	17.96%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-41	-9.629e+01	0.0000	966.0	49.24%	589.6	34.27%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-41	-9.563e+01	0.0000	690.0	35.17%	374.7	21.77%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-41	-9.555e+01	0.0000	521.0	26.55%	253.8	14.75%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-40	-9.339e+01	0.0000	330.0	16.82%	131.6	7.65%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-40	-9.323e+01	0.0000	1185.0	60.40%	779.9	45.32%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-40	-9.308e+01	0.0000	522.0	26.61%	256.2	14.89%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-40	-9.303e+01	0.0000	755.0	38.48%	426.2	24.77%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-40	-9.268e+01	0.0000	533.0	27.17%	264.7	15.38%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-39	-9.210e+01	0.0000	822.0	41.90%	479.3	27.86%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-39	-9.134e+01	0.0000	790.0	40.27%	455.9	26.50%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-39	-9.067e+01	0.0000	451.0	22.99%	210.0	12.20%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-38	-8.955e+01	0.0000	782.0	39.86%	451.7	26.25%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-38	-8.931e+01	0.0000	561.0	28.59%	287.3	16.69%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-38	-8.912e+01	0.0000	548.0	27.93%	278.4	16.18%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-38	-8.849e+01	0.0000	507.0	25.84%	250.5	14.56%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-38	-8.774e+01	0.0000	674.0	34.35%	371.8	21.61%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-37	-8.723e+01	0.0000	902.0	45.97%	549.1	31.91%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-37	-8.693e+01	0.0000	609.0	31.04%	324.2	18.84%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-37	-8.642e+01	0.0000	554.0	28.24%	286.0	16.62%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-37	-8.622e+01	0.0000	460.0	23.45%	220.8	12.83%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-37	-8.541e+01	0.0000	634.0	32.31%	344.7	20.04%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-36	-8.398e+01	0.0000	625.0	31.86%	339.9	19.76%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-36	-8.312e+01	0.0000	485.0	24.72%	240.5	13.97%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-35	-8.154e+01	0.0000	544.0	27.73%	283.8	16.49%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-35	-8.119e+01	0.0000	657.0	33.49%	366.0	21.27%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-34	-8.016e+01	0.0000	670.0	34.15%	377.7	21.95%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-34	-7.877e+01	0.0000	367.0	18.71%	165.6	9.62%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-33	-7.807e+01	0.0000	383.0	19.52%	176.0	10.23%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-33	-7.607e+01	0.0000	687.0	35.02%	395.4	22.98%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-32	-7.530e+01	0.0000	595.0	30.33%	327.9	19.06%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-31	-7.332e+01	0.0000	313.0	15.95%	135.4	7.87%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-31	-7.318e+01	0.0000	402.0	20.49%	193.7	11.26%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-31	-7.289e+01	0.0000	650.0	33.13%	371.7	21.60%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-31	-7.263e+01	0.0000	1958.0	99.80%	1645.6	95.64%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-31	-7.173e+01	0.0000	295.0	15.04%	125.2	7.27%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-30	-7.074e+01	0.0000	305.0	15.55%	132.1	7.68%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-28	-6.658e+01	0.0000	533.0	27.17%	292.2	16.98%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-28	-6.514e+01	0.0000	261.0	13.30%	109.7	6.38%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-28	-6.458e+01	0.0000	360.0	18.35%	173.5	10.09%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-28	-6.458e+01	0.0000	360.0	18.35%	173.5	10.09%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-27	-6.374e+01	0.0000	531.0	27.06%	294.8	17.14%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-27	-6.340e+01	0.0000	447.0	22.78%	234.3	13.62%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-27	-6.302e+01	0.0000	242.0	12.33%	99.7	5.80%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-27	-6.302e+01	0.0000	242.0	12.33%	99.7	5.80%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-26	-6.148e+01	0.0000	154.0	7.85%	51.0	2.96%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-26	-6.089e+01	0.0000	259.0	13.20%	111.3	6.47%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-26	-6.028e+01	0.0000	415.0	21.15%	215.6	12.53%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-25	-5.938e+01	0.0000	324.0	16.51%	154.9	9.00%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-25	-5.903e+01	0.0000	512.0	26.10%	286.8	16.67%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-25	-5.894e+01	0.0000	420.0	21.41%	220.7	12.82%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-25	-5.778e+01	0.0000	549.0	27.98%	315.4	18.33%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-24	-5.755e+01	0.0000	280.0	14.27%	127.5	7.41%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-24	-5.717e+01	0.0000	358.0	18.25%	179.5	10.43%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-24	-5.692e+01	0.0000	168.0	8.56%	60.2	3.50%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-24	-5.653e+01	0.0000	622.0	31.70%	372.5	21.65%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-24	-5.588e+01	0.0000	486.0	24.77%	271.4	15.77%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-24	-5.561e+01	0.0000	135.0	6.88%	43.4	2.52%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-24	-5.557e+01	0.0000	323.0	16.46%	157.4	9.15%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-23	-5.514e+01	0.0000	368.0	18.76%	188.3	10.94%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-22	-5.127e+01	0.0000	343.0	17.48%	175.7	10.21%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-21	-5.022e+01	0.0000	234.0	11.93%	105.0	6.10%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-21	-5.017e+01	0.0000	288.0	14.68%	139.2	8.09%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-21	-5.005e+01	0.0000	367.0	18.71%	193.8	11.26%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-21	-4.983e+01	0.0000	295.0	15.04%	144.3	8.39%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-21	-4.893e+01	0.0000	237.0	12.08%	107.9	6.27%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-21	-4.874e+01	0.0000	105.0	5.35%	32.0	1.86%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-20	-4.769e+01	0.0000	330.0	16.82%	171.0	9.94%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-20	-4.753e+01	0.0000	423.0	21.56%	236.7	13.75%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-20	-4.690e+01	0.0000	242.0	12.33%	112.2	6.52%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-20	-4.652e+01	0.0000	243.0	12.39%	113.1	6.58%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-19	-4.524e+01	0.0000	285.0	14.53%	142.4	8.27%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-19	-4.490e+01	0.0000	259.0	13.20%	125.3	7.28%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-19	-4.456e+01	0.0000	352.0	17.94%	189.8	11.03%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-19	-4.428e+01	0.0000	388.0	19.78%	215.2	12.51%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-18	-4.258e+01	0.0000	513.0	26.15%	310.4	18.04%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-17	-4.049e+01	0.0000	305.0	15.55%	162.0	9.41%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-16	-3.811e+01	0.0000	346.0	17.64%	193.1	11.22%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-14	-3.378e+01	0.0000	444.0	22.63%	272.7	15.85%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-14	-3.241e+01	0.0000	46.0	2.34%	11.0	0.64%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-13	-3.202e+01	0.0000	330.0	16.82%	190.7	11.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-13	-3.111e+01	0.0000	67.0	3.41%	20.2	1.17%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-13	-3.110e+01	0.0000	106.0	5.40%	41.3	2.40%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-13	-3.000e+01	0.0000	157.0	8.00%	73.5	4.27%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-12	-2.981e+01	0.0000	217.0	11.06%	113.4	6.59%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-12	-2.915e+01	0.0000	339.0	17.28%	201.2	11.69%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-12	-2.798e+01	0.0000	104.0	5.30%	42.7	2.48%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-11	-2.556e+01	0.0000	218.0	11.11%	119.8	6.96%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-11	-2.556e+01	0.0000	285.0	14.53%	167.9	9.76%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-9	-2.221e+01	0.0000	122.0	6.22%	58.7	3.41%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-9	-2.193e+01	0.0000	13.0	0.66%	1.5	0.09%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-9	-2.188e+01	0.0000	165.0	8.41%	87.2	5.07%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-9	-2.170e+01	0.0000	141.0	7.19%	71.9	4.18%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-9	-2.091e+01	0.0000	153.0	7.80%	80.5	4.68%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-9	-2.075e+01	0.0000	101.0	5.15%	46.4	2.69%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-8	-2.066e+01	0.0000	170.0	8.66%	92.8	5.40%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-8	-2.065e+01	0.0000	294.0	14.98%	182.1	10.58%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-8	-2.040e+01	0.0000	234.0	11.93%	138.1	8.02%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-8	-1.990e+01	0.0000	215.0	10.96%	125.2	7.28%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-8	-1.889e+01	0.0000	55.0	2.80%	20.3	1.18%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-8	-1.883e+01	0.0000	139.0	7.08%	73.9	4.29%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-8	-1.866e+01	0.0000	82.0	4.18%	36.3	2.11%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-7	-1.688e+01	0.0000	58.0	2.96%	23.4	1.36%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-7	-1.656e+01	0.0000	202.0	10.30%	121.8	7.08%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-6	-1.485e+01	0.0000	67.0	3.41%	30.2	1.75%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-5	-1.348e+01	0.0000	57.0	2.91%	25.3	1.47%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-5	-1.217e+01	0.0000	35.0	1.78%	13.1	0.76%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-4	-1.100e+01	0.0000	193.0	9.84%	125.9	7.32%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-3	-8.264e+00	0.0003	58.0	2.96%	31.7	1.84%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-2	-6.722e+00	0.0012	20.0	1.02%	8.7	0.51%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-2	-6.720e+00	0.0012	25.0	1.27%	11.4	0.66%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-1	-4.456e+00	0.0116	111.0	5.66%	79.0	4.59%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-2.729e+00	0.0653	32.0	1.63%	21.8	1.27%