Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1721)	% of Background Sequences with Motif
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-139	-3.205e+02	0.0000	1596.0	81.35%	934.5	54.30%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-134	-3.106e+02	0.0000	1651.0	84.15%	1001.9	58.22%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-130	-3.015e+02	0.0000	1812.0	92.35%	1203.9	69.96%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-123	-2.846e+02	0.0000	1025.0	52.24%	463.7	26.95%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-121	-2.804e+02	0.0000	1720.0	87.67%	1105.6	64.24%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-119	-2.754e+02	0.0000	1457.0	74.26%	833.7	48.45%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-117	-2.710e+02	0.0000	1725.0	87.92%	1119.9	65.07%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-115	-2.663e+02	0.0000	1788.0	91.13%	1201.6	69.82%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-114	-2.641e+02	0.0000	1620.0	82.57%	1007.9	58.56%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-114	-2.633e+02	0.0000	1872.0	95.41%	1321.6	76.79%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-114	-2.629e+02	0.0000	1417.0	72.22%	806.2	46.84%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-113	-2.604e+02	0.0000	1832.0	93.37%	1265.5	73.53%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-111	-2.556e+02	0.0000	1776.0	90.52%	1195.9	69.49%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-110	-2.537e+02	0.0000	1600.0	81.55%	995.9	57.87%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-109	-2.527e+02	0.0000	1525.0	77.73%	919.8	53.45%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-108	-2.509e+02	0.0000	1815.0	92.51%	1250.5	72.66%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-108	-2.494e+02	0.0000	1817.0	92.61%	1254.2	72.88%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-108	-2.490e+02	0.0000	1668.0	85.02%	1073.9	62.40%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-107	-2.482e+02	0.0000	1678.0	85.52%	1085.2	63.06%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-107	-2.472e+02	0.0000	1802.0	91.85%	1236.7	71.86%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-107	-2.466e+02	0.0000	1489.0	75.89%	889.9	51.71%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-106	-2.459e+02	0.0000	1628.0	82.98%	1032.2	59.98%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-106	-2.444e+02	0.0000	1487.0	75.79%	889.6	51.69%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-105	-2.433e+02	0.0000	1624.0	82.77%	1030.2	59.86%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-105	-2.423e+02	0.0000	1822.0	92.86%	1267.8	73.67%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-104	-2.417e+02	0.0000	1749.0	89.14%	1175.0	68.28%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-104	-2.408e+02	0.0000	1644.0	83.79%	1054.9	61.30%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-104	-2.402e+02	0.0000	1568.0	79.92%	974.6	56.63%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-104	-2.395e+02	0.0000	1879.0	95.77%	1352.5	78.59%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-103	-2.389e+02	0.0000	1589.0	80.99%	997.4	57.96%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-103	-2.385e+02	0.0000	1815.0	92.51%	1261.8	73.32%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-103	-2.373e+02	0.0000	1341.0	68.35%	759.2	44.12%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-103	-2.372e+02	0.0000	1789.0	91.18%	1228.9	71.41%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-102	-2.371e+02	0.0000	1571.0	80.07%	980.7	56.99%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-102	-2.364e+02	0.0000	1730.0	88.18%	1156.8	67.22%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-102	-2.354e+02	0.0000	1311.0	66.82%	734.3	42.67%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-100	-2.318e+02	0.0000	1812.0	92.35%	1263.3	73.41%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-100	-2.311e+02	0.0000	1804.0	91.95%	1253.7	72.85%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-100	-2.306e+02	0.0000	1778.0	90.62%	1220.9	70.95%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-100	-2.304e+02	0.0000	1624.0	82.77%	1042.5	60.58%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-99	-2.294e+02	0.0000	1826.0	93.07%	1284.3	74.62%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-99	-2.292e+02	0.0000	1606.0	81.86%	1024.6	59.54%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-98	-2.261e+02	0.0000	1761.0	89.76%	1203.3	69.92%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-97	-2.256e+02	0.0000	1822.0	92.86%	1282.2	74.50%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-97	-2.253e+02	0.0000	1744.0	88.89%	1183.1	68.74%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-97	-2.253e+02	0.0000	1854.0	94.50%	1327.5	77.14%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-97	-2.250e+02	0.0000	1765.0	89.96%	1209.9	70.31%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-97	-2.249e+02	0.0000	1862.0	94.90%	1339.3	77.83%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-97	-2.248e+02	0.0000	1866.0	95.11%	1345.7	78.20%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-97	-2.235e+02	0.0000	1443.0	73.55%	866.4	50.35%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-96	-2.231e+02	0.0000	1932.0	98.47%	1458.2	84.73%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-96	-2.230e+02	0.0000	1757.0	89.55%	1201.9	69.84%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-96	-2.223e+02	0.0000	1783.0	90.88%	1234.9	71.76%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-96	-2.221e+02	0.0000	1567.0	79.87%	990.2	57.54%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-95	-2.207e+02	0.0000	1493.0	76.10%	917.9	53.34%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-95	-2.205e+02	0.0000	1602.0	81.65%	1028.8	59.78%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-95	-2.205e+02	0.0000	1538.0	78.39%	962.4	55.92%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-95	-2.204e+02	0.0000	1510.0	76.96%	934.5	54.30%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-95	-2.201e+02	0.0000	1810.0	92.25%	1271.6	73.89%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-95	-2.192e+02	0.0000	1759.0	89.65%	1207.6	70.17%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-94	-2.183e+02	0.0000	1662.0	84.71%	1095.2	63.64%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-94	-2.173e+02	0.0000	1391.0	70.90%	824.0	47.88%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-94	-2.171e+02	0.0000	1892.0	96.43%	1392.1	80.89%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-94	-2.170e+02	0.0000	1783.0	90.88%	1239.1	72.00%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-94	-2.169e+02	0.0000	1911.0	97.40%	1424.8	82.79%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-93	-2.145e+02	0.0000	1843.0	93.93%	1322.0	76.82%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-92	-2.132e+02	0.0000	1714.0	87.36%	1159.9	67.40%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-92	-2.132e+02	0.0000	1464.0	74.62%	896.3	52.08%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-92	-2.121e+02	0.0000	1530.0	77.98%	962.0	55.90%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-92	-2.118e+02	0.0000	1891.0	96.38%	1395.8	81.11%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-91	-2.098e+02	0.0000	1570.0	80.02%	1005.5	58.42%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-90	-2.095e+02	0.0000	1384.0	70.54%	824.8	47.93%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-90	-2.093e+02	0.0000	1786.0	91.03%	1250.2	72.65%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-90	-2.090e+02	0.0000	1670.0	85.12%	1113.7	64.72%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-90	-2.090e+02	0.0000	1118.0	56.98%	594.2	34.53%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-90	-2.087e+02	0.0000	1345.0	68.55%	789.7	45.88%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-90	-2.075e+02	0.0000	1820.0	92.76%	1296.8	75.35%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-89	-2.069e+02	0.0000	1940.0	98.88%	1488.7	86.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-89	-2.062e+02	0.0000	1547.0	78.85%	985.8	57.28%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-89	-2.060e+02	0.0000	1439.0	73.34%	879.1	51.08%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-88	-2.048e+02	0.0000	1343.0	68.45%	791.5	45.99%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-88	-2.046e+02	0.0000	1637.0	83.44%	1081.5	62.85%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-88	-2.044e+02	0.0000	1852.0	94.39%	1343.3	78.06%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-88	-2.038e+02	0.0000	1595.0	81.29%	1037.1	60.26%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-88	-2.033e+02	0.0000	1914.0	97.55%	1441.2	83.74%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-87	-2.023e+02	0.0000	1620.0	82.57%	1065.0	61.89%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-87	-2.022e+02	0.0000	1542.0	78.59%	985.0	57.23%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-87	-2.015e+02	0.0000	1561.0	79.56%	1004.4	58.36%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-86	-1.999e+02	0.0000	1883.0	95.97%	1393.2	80.95%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-86	-1.998e+02	0.0000	1469.0	74.87%	915.0	53.17%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-86	-1.996e+02	0.0000	1278.0	65.14%	738.9	42.94%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-86	-1.996e+02	0.0000	1886.0	96.13%	1399.0	81.29%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-86	-1.995e+02	0.0000	1915.0	97.60%	1446.6	84.06%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-86	-1.993e+02	0.0000	1455.0	74.16%	901.2	52.37%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-86	-1.985e+02	0.0000	1278.0	65.14%	739.8	42.99%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-86	-1.985e+02	0.0000	1356.0	69.11%	809.4	47.03%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-86	-1.984e+02	0.0000	1675.0	85.37%	1129.8	65.65%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-85	-1.977e+02	0.0000	1445.0	73.65%	893.3	51.91%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-85	-1.977e+02	0.0000	1839.0	93.73%	1331.5	77.37%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-85	-1.976e+02	0.0000	1741.0	88.74%	1206.5	70.11%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-85	-1.970e+02	0.0000	1702.0	86.75%	1161.4	67.49%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-85	-1.962e+02	0.0000	1673.0	85.27%	1129.0	65.61%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-84	-1.954e+02	0.0000	1750.0	89.19%	1219.8	70.88%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-84	-1.951e+02	0.0000	1463.0	74.57%	913.4	53.07%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-84	-1.940e+02	0.0000	1787.0	91.08%	1266.5	73.59%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-84	-1.939e+02	0.0000	1570.0	80.02%	1021.9	59.38%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-84	-1.938e+02	0.0000	1757.0	89.55%	1229.7	71.45%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-84	-1.936e+02	0.0000	1343.0	68.45%	802.5	46.63%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-83	-1.928e+02	0.0000	1794.0	91.44%	1277.0	74.20%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-83	-1.923e+02	0.0000	1335.0	68.04%	796.3	46.27%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-83	-1.920e+02	0.0000	1824.0	92.97%	1316.1	76.47%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-83	-1.918e+02	0.0000	1341.0	68.35%	802.7	46.64%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-83	-1.912e+02	0.0000	1218.0	62.08%	694.1	40.33%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-83	-1.911e+02	0.0000	1307.0	66.62%	772.2	44.87%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-82	-1.906e+02	0.0000	1555.0	79.26%	1009.6	58.66%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-82	-1.905e+02	0.0000	1807.0	92.10%	1295.9	75.30%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-82	-1.905e+02	0.0000	1454.0	74.11%	909.4	52.84%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-82	-1.899e+02	0.0000	1592.0	81.14%	1048.9	60.95%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-82	-1.897e+02	0.0000	1479.0	75.38%	935.0	54.33%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-81	-1.884e+02	0.0000	1414.0	72.07%	873.3	50.75%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-81	-1.884e+02	0.0000	1383.0	70.49%	844.7	49.08%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-81	-1.883e+02	0.0000	1435.0	73.14%	893.2	51.90%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-81	-1.882e+02	0.0000	1465.0	74.67%	922.9	53.63%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-81	-1.875e+02	0.0000	1922.0	97.96%	1469.9	85.41%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-81	-1.870e+02	0.0000	1389.0	70.80%	851.5	49.48%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-81	-1.869e+02	0.0000	1669.0	85.07%	1134.7	65.94%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-80	-1.864e+02	0.0000	1398.0	71.25%	860.5	50.00%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-80	-1.854e+02	0.0000	1461.0	74.46%	921.2	53.53%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-80	-1.852e+02	0.0000	1652.0	84.20%	1117.8	64.95%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-80	-1.849e+02	0.0000	1844.0	93.99%	1350.2	78.46%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-80	-1.845e+02	0.0000	1873.0	95.46%	1392.4	80.91%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-80	-1.843e+02	0.0000	1464.0	74.62%	925.2	53.76%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-79	-1.841e+02	0.0000	1255.0	63.97%	733.1	42.60%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-79	-1.839e+02	0.0000	1480.0	75.43%	941.1	54.68%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-79	-1.838e+02	0.0000	1713.0	87.31%	1187.2	68.99%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-79	-1.836e+02	0.0000	1131.0	57.65%	628.6	36.53%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-79	-1.834e+02	0.0000	1881.0	95.87%	1405.6	81.68%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-79	-1.826e+02	0.0000	1050.0	53.52%	563.4	32.74%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-79	-1.819e+02	0.0000	1707.0	87.00%	1182.7	68.73%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-78	-1.818e+02	0.0000	1311.0	66.82%	785.5	45.64%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-78	-1.814e+02	0.0000	1858.0	94.70%	1373.8	79.83%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-78	-1.814e+02	0.0000	1440.0	73.39%	905.6	52.62%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-78	-1.813e+02	0.0000	1829.0	93.22%	1333.8	77.50%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-78	-1.813e+02	0.0000	1611.0	82.11%	1077.5	62.61%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-78	-1.809e+02	0.0000	1274.0	64.93%	753.4	43.78%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-78	-1.806e+02	0.0000	1922.0	97.96%	1475.3	85.73%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-78	-1.803e+02	0.0000	1639.0	83.54%	1108.9	64.43%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-78	-1.797e+02	0.0000	1383.0	70.49%	853.4	49.59%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-78	-1.797e+02	0.0000	1898.0	96.74%	1435.4	83.41%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-77	-1.789e+02	0.0000	1455.0	74.16%	922.4	53.60%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-77	-1.786e+02	0.0000	1642.0	83.69%	1113.8	64.72%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-77	-1.786e+02	0.0000	1597.0	81.40%	1065.5	61.92%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-77	-1.784e+02	0.0000	1797.0	91.59%	1294.6	75.22%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-77	-1.776e+02	0.0000	1595.0	81.29%	1064.8	61.88%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-76	-1.765e+02	0.0000	1906.0	97.15%	1451.7	84.35%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-76	-1.764e+02	0.0000	1362.0	69.42%	838.0	48.69%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-76	-1.757e+02	0.0000	1206.0	61.47%	699.9	40.67%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-76	-1.755e+02	0.0000	1270.0	64.73%	755.9	43.92%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-76	-1.753e+02	0.0000	1340.0	68.30%	819.0	47.59%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-76	-1.752e+02	0.0000	969.0	49.39%	506.1	29.41%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-75	-1.747e+02	0.0000	1305.0	66.51%	787.4	45.75%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-75	-1.740e+02	0.0000	1242.0	63.30%	732.0	42.54%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-75	-1.730e+02	0.0000	1066.0	54.33%	585.2	34.00%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-74	-1.726e+02	0.0000	1391.0	70.90%	868.8	50.49%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-74	-1.722e+02	0.0000	946.0	48.22%	491.3	28.55%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-74	-1.720e+02	0.0000	1191.0	60.70%	690.3	40.11%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-74	-1.709e+02	0.0000	1898.0	96.74%	1444.0	83.90%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-74	-1.705e+02	0.0000	1497.0	76.30%	972.3	56.50%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-73	-1.695e+02	0.0000	1917.0	97.71%	1476.0	85.77%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-73	-1.691e+02	0.0000	1704.0	86.85%	1192.7	69.30%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-73	-1.691e+02	0.0000	1474.0	75.13%	951.2	55.27%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-73	-1.689e+02	0.0000	1376.0	70.13%	858.4	49.88%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-73	-1.687e+02	0.0000	1379.0	70.29%	861.5	50.06%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-72	-1.680e+02	0.0000	1236.0	63.00%	733.6	42.63%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-72	-1.678e+02	0.0000	1153.0	58.77%	662.0	38.47%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-72	-1.673e+02	0.0000	1565.0	79.77%	1044.7	60.71%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-72	-1.671e+02	0.0000	1557.0	79.36%	1036.5	60.23%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-72	-1.659e+02	0.0000	1394.0	71.05%	878.6	51.06%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-71	-1.655e+02	0.0000	1182.0	60.24%	689.7	40.08%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-71	-1.652e+02	0.0000	1075.0	54.79%	600.3	34.88%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-71	-1.641e+02	0.0000	1500.0	76.45%	982.9	57.11%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-70	-1.634e+02	0.0000	1943.0	99.03%	1531.2	88.98%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-70	-1.627e+02	0.0000	1155.0	58.87%	669.1	38.88%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-70	-1.618e+02	0.0000	1202.0	61.26%	710.3	41.27%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-70	-1.615e+02	0.0000	1031.0	52.55%	568.4	33.03%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-70	-1.613e+02	0.0000	1458.0	74.31%	944.5	54.88%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-68	-1.584e+02	0.0000	1934.0	98.57%	1517.8	88.20%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-68	-1.582e+02	0.0000	1927.0	98.22%	1504.4	87.41%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-68	-1.580e+02	0.0000	1105.0	56.32%	632.1	36.73%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-68	-1.569e+02	0.0000	1317.0	67.13%	817.6	47.51%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-68	-1.568e+02	0.0000	1009.0	51.43%	555.5	32.28%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-68	-1.568e+02	0.0000	855.0	43.58%	436.4	25.36%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-67	-1.556e+02	0.0000	1079.0	54.99%	613.7	35.66%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-67	-1.552e+02	0.0000	1961.0	99.95%	1585.9	92.16%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-66	-1.536e+02	0.0000	1906.0	97.15%	1472.8	85.58%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-66	-1.534e+02	0.0000	1892.0	96.43%	1450.2	84.27%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-66	-1.531e+02	0.0000	1368.0	69.72%	868.6	50.47%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-66	-1.531e+02	0.0000	1077.0	54.89%	614.9	35.73%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-66	-1.530e+02	0.0000	1055.0	53.77%	596.9	34.68%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-66	-1.526e+02	0.0000	1036.0	52.80%	581.2	33.77%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-65	-1.519e+02	0.0000	1875.0	95.57%	1426.0	82.86%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-65	-1.512e+02	0.0000	1071.0	54.59%	611.8	35.55%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-65	-1.504e+02	0.0000	982.0	50.05%	540.8	31.42%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-65	-1.500e+02	0.0000	1952.0	99.49%	1563.6	90.86%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-65	-1.497e+02	0.0000	1147.0	58.46%	676.1	39.29%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-64	-1.496e+02	0.0000	912.0	46.48%	486.4	28.26%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-64	-1.493e+02	0.0000	1177.0	59.99%	702.3	40.81%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-64	-1.489e+02	0.0000	860.0	43.83%	447.4	26.00%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-64	-1.481e+02	0.0000	1276.0	65.04%	790.3	45.92%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-63	-1.471e+02	0.0000	1890.0	96.33%	1453.7	84.47%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-63	-1.455e+02	0.0000	1413.0	72.02%	919.3	53.42%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-63	-1.453e+02	0.0000	1210.0	61.67%	735.9	42.76%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-63	-1.453e+02	0.0000	1008.0	51.38%	566.7	32.93%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-63	-1.452e+02	0.0000	834.0	42.51%	431.5	25.07%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-62	-1.441e+02	0.0000	1360.0	69.32%	871.5	50.64%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-62	-1.433e+02	0.0000	931.0	47.45%	507.3	29.48%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-62	-1.429e+02	0.0000	1276.0	65.04%	796.8	46.30%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-61	-1.423e+02	0.0000	922.0	46.99%	501.4	29.13%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-61	-1.421e+02	0.0000	1058.0	53.92%	610.6	35.48%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-61	-1.420e+02	0.0000	1232.0	62.79%	758.0	44.05%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-61	-1.419e+02	0.0000	1277.0	65.09%	798.8	46.41%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-60	-1.386e+02	0.0000	1249.0	63.66%	777.9	45.20%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-59	-1.366e+02	0.0000	1311.0	66.82%	835.5	48.55%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-59	-1.364e+02	0.0000	882.0	44.95%	476.9	27.71%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-59	-1.361e+02	0.0000	1085.0	55.30%	639.3	37.15%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-58	-1.358e+02	0.0000	1949.0	99.34%	1568.2	91.13%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-58	-1.355e+02	0.0000	886.0	45.16%	480.3	27.91%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-58	-1.353e+02	0.0000	1115.0	56.83%	665.2	38.65%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-58	-1.345e+02	0.0000	1148.0	58.51%	694.2	40.34%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-58	-1.337e+02	0.0000	1037.0	52.85%	602.1	34.99%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-58	-1.336e+02	0.0000	1935.0	98.62%	1541.2	89.56%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-57	-1.333e+02	0.0000	707.0	36.03%	350.0	20.34%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-57	-1.330e+02	0.0000	1254.0	63.91%	788.1	45.80%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-57	-1.327e+02	0.0000	1223.0	62.33%	761.9	44.27%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-57	-1.323e+02	0.0000	1035.0	52.75%	602.3	35.00%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-57	-1.320e+02	0.0000	902.0	45.97%	496.9	28.87%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-56	-1.307e+02	0.0000	1028.0	52.40%	598.2	34.76%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-56	-1.303e+02	0.0000	836.0	42.61%	447.0	25.97%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-56	-1.301e+02	0.0000	1241.0	63.25%	780.9	45.38%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-56	-1.295e+02	0.0000	977.0	49.80%	558.3	32.44%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-55	-1.279e+02	0.0000	1857.0	94.65%	1425.4	82.82%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-55	-1.268e+02	0.0000	952.0	48.52%	541.2	31.45%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-54	-1.263e+02	0.0000	1418.0	72.27%	947.3	55.05%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-54	-1.259e+02	0.0000	895.0	45.62%	497.9	28.93%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-54	-1.253e+02	0.0000	539.0	27.47%	240.5	13.98%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-53	-1.231e+02	0.0000	886.0	45.16%	493.9	28.70%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-53	-1.231e+02	0.0000	659.0	33.59%	324.0	18.83%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-53	-1.227e+02	0.0000	1002.0	51.07%	586.4	34.08%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-52	-1.219e+02	0.0000	1801.0	91.79%	1359.7	79.01%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-52	-1.208e+02	0.0000	798.0	40.67%	428.4	24.89%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-51	-1.197e+02	0.0000	1651.0	84.15%	1190.7	69.19%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-51	-1.181e+02	0.0000	1206.0	61.47%	764.8	44.44%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-51	-1.180e+02	0.0000	1099.0	56.01%	672.7	39.09%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-51	-1.180e+02	0.0000	742.0	37.82%	389.3	22.62%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-50	-1.172e+02	0.0000	1260.0	64.22%	813.8	47.29%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-50	-1.161e+02	0.0000	933.0	47.55%	538.5	31.29%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-50	-1.152e+02	0.0000	749.0	38.18%	397.5	23.10%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-49	-1.139e+02	0.0000	1050.0	53.52%	636.6	36.99%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-49	-1.138e+02	0.0000	1134.0	57.80%	707.5	41.11%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-49	-1.129e+02	0.0000	640.0	32.62%	320.8	18.64%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-48	-1.116e+02	0.0000	1185.0	60.40%	754.3	43.83%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-48	-1.116e+02	0.0000	1218.0	62.08%	783.1	45.51%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-47	-1.100e+02	0.0000	1330.0	67.79%	886.5	51.51%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-47	-1.091e+02	0.0000	591.0	30.12%	289.3	16.81%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-47	-1.089e+02	0.0000	827.0	42.15%	463.6	26.94%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-47	-1.086e+02	0.0000	777.0	39.60%	425.7	24.74%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-47	-1.085e+02	0.0000	753.0	38.38%	407.5	23.68%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-46	-1.079e+02	0.0000	1954.0	99.59%	1604.6	93.24%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-46	-1.072e+02	0.0000	920.0	46.89%	538.8	31.31%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-46	-1.070e+02	0.0000	686.0	34.96%	359.6	20.90%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-46	-1.060e+02	0.0000	969.0	49.39%	579.7	33.68%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-45	-1.057e+02	0.0000	821.0	41.85%	462.9	26.90%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-45	-1.056e+02	0.0000	602.0	30.68%	300.6	17.47%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-45	-1.055e+02	0.0000	1072.0	54.64%	665.4	38.66%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-45	-1.048e+02	0.0000	698.0	35.58%	370.3	21.52%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-45	-1.042e+02	0.0000	752.0	38.33%	411.3	23.90%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-44	-1.031e+02	0.0000	782.0	39.86%	435.5	25.30%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-44	-1.014e+02	0.0000	790.0	40.27%	443.2	25.76%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-43	-1.005e+02	0.0000	507.0	25.84%	239.9	13.94%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-43	-9.987e+01	0.0000	852.0	43.43%	493.2	28.66%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-43	-9.949e+01	0.0000	822.0	41.90%	471.0	27.37%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-42	-9.889e+01	0.0000	1139.0	58.05%	731.3	42.50%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-42	-9.867e+01	0.0000	1092.0	55.66%	691.6	40.19%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-42	-9.859e+01	0.0000	966.0	49.24%	586.3	34.07%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-42	-9.825e+01	0.0000	1948.0	99.29%	1599.5	92.94%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-42	-9.713e+01	0.0000	1957.0	99.75%	1621.7	94.23%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-42	-9.697e+01	0.0000	632.0	32.21%	330.4	19.20%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-42	-9.676e+01	0.0000	875.0	44.60%	515.5	29.95%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-41	-9.517e+01	0.0000	650.0	33.13%	345.7	20.09%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-41	-9.499e+01	0.0000	625.0	31.86%	327.8	19.05%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-41	-9.448e+01	0.0000	521.0	26.55%	254.2	14.77%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-40	-9.431e+01	0.0000	646.0	32.93%	343.0	19.93%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-40	-9.269e+01	0.0000	761.0	38.79%	431.9	25.10%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-40	-9.214e+01	0.0000	548.0	27.93%	275.4	16.00%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-39	-9.206e+01	0.0000	690.0	35.17%	378.3	21.98%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-39	-9.139e+01	0.0000	389.0	19.83%	169.9	9.87%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-39	-9.086e+01	0.0000	601.0	30.63%	314.6	18.28%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-39	-9.064e+01	0.0000	609.0	31.04%	320.2	18.61%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-39	-9.037e+01	0.0000	674.0	34.35%	368.8	21.43%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-38	-8.893e+01	0.0000	305.0	15.55%	119.7	6.96%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-38	-8.809e+01	0.0000	590.0	30.07%	309.2	17.97%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-38	-8.794e+01	0.0000	646.0	32.93%	350.7	20.38%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-38	-8.766e+01	0.0000	825.0	42.05%	487.6	28.33%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-37	-8.644e+01	0.0000	755.0	38.48%	434.8	25.27%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-37	-8.524e+01	0.0000	793.0	40.42%	465.6	27.06%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-36	-8.510e+01	0.0000	624.0	31.80%	337.8	19.63%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-36	-8.404e+01	0.0000	595.0	30.33%	317.9	18.47%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-36	-8.390e+01	0.0000	1013.0	51.63%	645.7	37.52%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-36	-8.383e+01	0.0000	486.0	24.77%	240.8	13.99%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-36	-8.290e+01	0.0000	522.0	26.61%	266.6	15.49%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-35	-8.267e+01	0.0000	533.0	27.17%	274.1	15.93%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-35	-8.121e+01	0.0000	367.0	18.71%	164.0	9.53%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-35	-8.075e+01	0.0000	554.0	28.24%	291.9	16.96%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-35	-8.062e+01	0.0000	640.0	32.62%	354.5	20.60%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-34	-7.855e+01	0.0000	634.0	32.31%	352.8	20.50%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-34	-7.843e+01	0.0000	687.0	35.02%	392.2	22.79%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-34	-7.834e+01	0.0000	1958.0	99.80%	1640.4	95.32%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-32	-7.588e+01	0.0000	758.0	38.63%	450.1	26.16%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-32	-7.587e+01	0.0000	651.0	33.18%	368.0	21.39%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-32	-7.568e+01	0.0000	549.0	27.98%	293.3	17.04%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-32	-7.526e+01	0.0000	650.0	33.13%	368.1	21.39%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-32	-7.495e+01	0.0000	589.0	30.02%	323.1	18.77%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-32	-7.426e+01	0.0000	544.0	27.73%	291.6	16.94%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-32	-7.423e+01	0.0000	485.0	24.72%	249.1	14.47%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-32	-7.394e+01	0.0000	531.0	27.06%	282.3	16.40%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-32	-7.388e+01	0.0000	590.0	30.07%	325.3	18.90%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-32	-7.378e+01	0.0000	670.0	34.15%	385.8	22.42%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-31	-7.282e+01	0.0000	561.0	28.59%	305.8	17.77%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-31	-7.234e+01	0.0000	657.0	33.49%	377.5	21.94%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-31	-7.152e+01	0.0000	980.0	49.95%	636.6	36.99%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-30	-6.969e+01	0.0000	809.0	41.23%	499.0	29.00%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-29	-6.722e+01	0.0000	560.0	28.54%	311.5	18.10%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-29	-6.687e+01	0.0000	451.0	22.99%	233.6	13.57%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-28	-6.484e+01	0.0000	259.0	13.20%	108.1	6.28%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-27	-6.445e+01	0.0000	388.0	19.78%	192.9	11.21%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-27	-6.251e+01	0.0000	533.0	27.17%	297.4	17.28%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-27	-6.230e+01	0.0000	441.0	22.48%	231.3	13.44%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-26	-6.176e+01	0.0000	295.0	15.04%	133.9	7.78%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-26	-6.154e+01	0.0000	324.0	16.51%	152.3	8.85%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-26	-6.041e+01	0.0000	330.0	16.82%	157.1	9.13%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-26	-6.001e+01	0.0000	622.0	31.70%	367.9	21.38%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-25	-5.761e+01	0.0000	460.0	23.45%	250.6	14.56%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-24	-5.746e+01	0.0000	261.0	13.30%	115.8	6.73%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-24	-5.661e+01	0.0000	402.0	20.49%	210.7	12.24%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-24	-5.640e+01	0.0000	383.0	19.52%	197.5	11.47%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-24	-5.568e+01	0.0000	447.0	22.78%	243.7	14.16%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-23	-5.489e+01	0.0000	313.0	15.95%	151.6	8.81%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-23	-5.457e+01	0.0000	305.0	15.55%	146.2	8.49%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-23	-5.456e+01	0.0000	323.0	16.46%	158.7	9.22%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-23	-5.329e+01	0.0000	330.0	16.82%	164.3	9.55%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-22	-5.242e+01	0.0000	259.0	13.20%	118.9	6.91%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-22	-5.152e+01	0.0000	512.0	26.10%	296.7	17.24%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-22	-5.138e+01	0.0000	330.0	16.82%	166.0	9.65%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-21	-5.016e+01	0.0000	294.0	14.98%	143.8	8.36%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-21	-4.981e+01	0.0000	358.0	18.25%	187.5	10.89%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-21	-4.966e+01	0.0000	352.0	17.94%	183.1	10.64%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-21	-4.926e+01	0.0000	415.0	21.15%	228.0	13.25%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-21	-4.877e+01	0.0000	339.0	17.28%	175.9	10.22%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-20	-4.690e+01	0.0000	295.0	15.04%	147.7	8.58%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-20	-4.620e+01	0.0000	285.0	14.53%	141.5	8.22%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-19	-4.605e+01	0.0000	346.0	17.64%	183.0	10.64%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-19	-4.566e+01	0.0000	154.0	7.85%	59.4	3.45%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-19	-4.506e+01	0.0000	367.0	18.71%	199.9	11.62%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-19	-4.428e+01	0.0000	360.0	18.35%	195.6	11.37%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-19	-4.428e+01	0.0000	360.0	18.35%	195.6	11.37%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-18	-4.169e+01	0.0000	494.0	25.18%	297.6	17.29%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-17	-4.133e+01	0.0000	513.0	26.15%	312.7	18.17%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-17	-4.106e+01	0.0000	343.0	17.48%	187.3	10.89%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-17	-4.025e+01	0.0000	217.0	11.06%	102.3	5.94%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-16	-3.874e+01	0.0000	368.0	18.76%	208.9	12.14%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-16	-3.809e+01	0.0000	444.0	22.63%	265.3	15.41%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-16	-3.793e+01	0.0000	168.0	8.56%	73.1	4.25%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-16	-3.777e+01	0.0000	242.0	12.33%	121.1	7.04%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-16	-3.777e+01	0.0000	242.0	12.33%	121.1	7.04%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-16	-3.768e+01	0.0000	280.0	14.27%	147.9	8.59%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-16	-3.699e+01	0.0000	157.0	8.00%	67.0	3.89%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-15	-3.641e+01	0.0000	285.0	14.53%	152.6	8.87%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-14	-3.395e+01	0.0000	215.0	10.96%	107.1	6.23%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-14	-3.381e+01	0.0000	237.0	12.08%	122.0	7.09%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-14	-3.330e+01	0.0000	242.0	12.33%	126.7	7.36%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-14	-3.310e+01	0.0000	420.0	21.41%	255.5	14.84%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-13	-3.175e+01	0.0000	105.0	5.35%	40.0	2.33%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-13	-3.142e+01	0.0000	135.0	6.88%	58.5	3.40%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-12	-2.812e+01	0.0000	423.0	21.56%	266.3	15.47%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-12	-2.800e+01	0.0000	234.0	11.93%	127.6	7.41%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-12	-2.782e+01	0.0000	193.0	9.84%	99.1	5.76%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-11	-2.717e+01	0.0000	165.0	8.41%	81.1	4.71%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-11	-2.698e+01	0.0000	288.0	14.68%	167.1	9.71%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-10	-2.423e+01	0.0000	139.0	7.08%	67.2	3.90%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-9	-2.288e+01	0.0000	104.0	5.30%	46.7	2.71%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-9	-2.193e+01	0.0000	13.0	0.66%	2.0	0.12%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-8	-2.040e+01	0.0000	234.0	11.93%	139.0	8.08%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-8	-1.967e+01	0.0000	202.0	10.30%	116.1	6.75%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-7	-1.811e+01	0.0000	35.0	1.78%	10.9	0.63%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-7	-1.750e+01	0.0000	57.0	2.91%	23.0	1.34%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-7	-1.677e+01	0.0000	243.0	12.39%	151.7	8.82%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-7	-1.669e+01	0.0000	101.0	5.15%	50.3	2.92%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-6	-1.579e+01	0.0000	170.0	8.66%	99.7	5.79%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-6	-1.422e+01	0.0000	58.0	2.96%	25.7	1.49%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-5	-1.215e+01	0.0000	141.0	7.19%	84.2	4.89%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-5	-1.202e+01	0.0000	153.0	7.80%	93.9	5.45%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-4	-1.098e+01	0.0000	55.0	2.80%	26.7	1.55%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-4	-1.064e+01	0.0000	218.0	11.11%	145.6	8.46%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-4	-1.018e+01	0.0000	82.0	4.18%	45.4	2.64%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-4	-1.016e+01	0.0000	106.0	5.40%	62.5	3.63%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-4	-9.962e+00	0.0000	58.0	2.96%	29.8	1.73%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-4	-9.614e+00	0.0001	25.0	1.27%	9.9	0.58%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-9.384e+00	0.0001	122.0	6.22%	75.3	4.37%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-3	-8.788e+00	0.0002	111.0	5.66%	68.2	3.96%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-7.335e+00	0.0007	46.0	2.34%	24.6	1.43%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.863e+00	0.0575	67.0	3.41%	48.3	2.80%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.281e+00	0.1027	32.0	1.63%	23.0	1.34%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.266e+00	0.1040	67.0	3.41%	50.2	2.92%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.689e+00	0.1848	20.0	1.02%	14.5	0.84%