Information for 22-GAGTGGCTCTAG (Motif 42)

T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
Reverse Opposite:
G A T C G A C T C T G A T A C G C T G A T A C G G T A C G T A C G C T A A T G C G A C T A T G C
p-value:1e-82
log p-value:-1.907e+02
Information Content per bp:1.503
Number of Target Sequences with motif1480.0
Percentage of Target Sequences with motif75.43%
Number of Background Sequences with motif934.0
Percentage of Background Sequences with motif54.27%
Average Position of motif in Targets3898.2 +/- 4534.1bp
Average Position of motif in Background2249.2 +/- 2160.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)2.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGCTCTAG
CTTGAGTGGCT----
 A C G T A C G T A C G T T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAGTGGCTCTAG
TTRAGTGSYK----
 A C G T A C G T T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGGCTCTAG
TTGAGTGSTT----
 A C G T A C G T T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GAGTGGCTCTAG----
----GGCTCYAKCAYC
 T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

PB0114.1_Egr1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAGTGGCTCTAG
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T A C G T T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAGTGGCTCTAG----
-BCNGGTTCTAGANCN
 T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGTGGCTCTAG
BTBRAGTGSN-----
 A C G T A C G T A C G T T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGGCTCTAG
TGATTGGCTANN-
 A C G T T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGCTCTAG
CTYRAGTGSY-----
 A C G T A C G T A C G T T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GAGTGGCTCTAG
AATTTCAAGTGGCTTN--
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G C T G A T A C G C G A T C A T G C A T G A T G C G A C T A T G C G A C T C T G A C T A G
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T A C G T