Information for 1-GCAAAATGCACC (Motif 2)

A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C
Reverse Opposite:
T C A G A C T G C A G T C A T G G T A C G C T A A C G T A C G T A G C T A C G T A C T G T G A C
p-value:1e-139
log p-value:-3.204e+02
Information Content per bp:1.441
Number of Target Sequences with motif1557.0
Percentage of Target Sequences with motif79.36%
Number of Background Sequences with motif894.3
Percentage of Background Sequences with motif51.97%
Average Position of motif in Targets3711.5 +/- 4463.0bp
Average Position of motif in Background2151.3 +/- 2092.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0146.1_Mafk_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCAAAATGCACC-
GAAAAAATTGCAAGG
 A C G T A C G T A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

ZNF143/MA0088.2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCAAAATGCACC-
TACCCACAATGCATTG
 A C G T A C G T A C G T A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAAAATGCACC
ATGCATAATTCA--
 A C G T A C G T A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GCAAAATGCACC
CANAGNNCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCAAAATGCACC
WYATGCATWATGCAT-
 A C G T A C G T A C G T A C G T A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAATGCACC
AGAGTCCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAAAATGCACC--
--SSAATCCACANN
 A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C A C G T A C G T
A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAAAATGCACC
-TCCAATCCACA
 A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C
A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAAAATGCACC---
GGAAANTGAAACTNA
 A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C A C G T A C G T A C G T
T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GCAAAATGCACC
ARGAGGMCAAAATGW---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G A C T G C A T C G A T G C A T G C A C G A T C A T G G T A C G T C A G T A C A G T C
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T A C G T A C G T A C G T