Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1711)	% of Background Sequences with Motif
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-125	-2.885e+02	0.0000	1025.0	52.24%	458.3	26.78%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-125	-2.882e+02	0.0000	1832.0	93.37%	1235.4	72.19%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-121	-2.794e+02	0.0000	1812.0	92.35%	1215.6	71.04%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-119	-2.758e+02	0.0000	1725.0	87.92%	1109.8	64.85%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-115	-2.667e+02	0.0000	1783.0	90.88%	1188.7	69.46%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-114	-2.634e+02	0.0000	1596.0	81.35%	977.5	57.12%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-111	-2.568e+02	0.0000	1600.0	81.55%	987.4	57.70%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-109	-2.529e+02	0.0000	1538.0	78.39%	927.0	54.17%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-107	-2.487e+02	0.0000	1720.0	87.67%	1127.3	65.88%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-106	-2.463e+02	0.0000	1678.0	85.52%	1081.4	63.19%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-105	-2.437e+02	0.0000	1620.0	82.57%	1020.1	59.61%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-104	-2.405e+02	0.0000	1822.0	92.86%	1262.6	73.78%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-104	-2.399e+02	0.0000	1651.0	84.15%	1057.1	61.77%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-103	-2.394e+02	0.0000	1439.0	73.34%	843.9	49.31%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-103	-2.382e+02	0.0000	1487.0	75.79%	890.4	52.03%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-102	-2.363e+02	0.0000	1872.0	95.41%	1337.6	78.16%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-101	-2.344e+02	0.0000	1815.0	92.51%	1258.2	73.53%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-101	-2.337e+02	0.0000	1443.0	73.55%	852.7	49.83%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-100	-2.313e+02	0.0000	1628.0	82.98%	1040.7	60.81%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-100	-2.305e+02	0.0000	1783.0	90.88%	1220.3	71.31%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-99	-2.299e+02	0.0000	1713.0	87.31%	1136.6	66.42%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-99	-2.299e+02	0.0000	1668.0	85.02%	1085.7	63.45%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-99	-2.297e+02	0.0000	1620.0	82.57%	1033.9	60.42%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-98	-2.278e+02	0.0000	1624.0	82.77%	1039.9	60.77%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-98	-2.269e+02	0.0000	1778.0	90.62%	1217.2	71.13%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-97	-2.240e+02	0.0000	1595.0	81.29%	1012.2	59.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-97	-2.238e+02	0.0000	1862.0	94.90%	1334.0	77.95%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-96	-2.212e+02	0.0000	1455.0	74.16%	875.8	51.18%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-96	-2.211e+02	0.0000	1788.0	91.13%	1235.8	72.21%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-95	-2.208e+02	0.0000	1384.0	70.54%	809.5	47.30%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-95	-2.203e+02	0.0000	1417.0	72.22%	840.7	49.13%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-95	-2.188e+02	0.0000	1642.0	83.69%	1067.1	62.36%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-94	-2.177e+02	0.0000	1749.0	89.14%	1190.4	69.56%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-94	-2.175e+02	0.0000	1817.0	92.61%	1277.0	74.62%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-94	-2.173e+02	0.0000	1542.0	78.59%	965.0	56.39%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-94	-2.172e+02	0.0000	1891.0	96.38%	1383.6	80.85%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-94	-2.169e+02	0.0000	1644.0	83.79%	1071.2	62.60%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-94	-2.167e+02	0.0000	1673.0	85.27%	1103.2	64.47%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-94	-2.167e+02	0.0000	1802.0	91.85%	1257.5	73.48%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-94	-2.165e+02	0.0000	1445.0	73.65%	870.1	50.85%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-93	-2.161e+02	0.0000	1810.0	92.25%	1268.7	74.14%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-93	-2.157e+02	0.0000	1866.0	95.11%	1346.6	78.69%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-93	-2.157e+02	0.0000	1815.0	92.51%	1275.1	74.52%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-93	-2.157e+02	0.0000	1759.0	89.65%	1204.5	70.39%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-93	-2.142e+02	0.0000	1794.0	91.44%	1249.8	73.03%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-92	-2.131e+02	0.0000	1525.0	77.73%	951.9	55.63%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-92	-2.130e+02	0.0000	1854.0	94.50%	1331.6	77.81%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-91	-2.114e+02	0.0000	1662.0	84.71%	1096.5	64.08%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-91	-2.111e+02	0.0000	1341.0	68.35%	779.2	45.54%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-91	-2.097e+02	0.0000	1883.0	95.97%	1377.6	80.51%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-91	-2.096e+02	0.0000	1571.0	80.07%	1001.9	58.55%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-91	-2.096e+02	0.0000	1379.0	70.29%	815.6	47.66%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-90	-2.092e+02	0.0000	1510.0	76.96%	940.2	54.94%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-90	-2.085e+02	0.0000	1789.0	91.18%	1249.0	72.99%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-90	-2.075e+02	0.0000	1356.0	69.11%	796.7	46.56%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-90	-2.073e+02	0.0000	1464.0	74.62%	897.7	52.46%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-89	-2.071e+02	0.0000	1670.0	85.12%	1109.3	64.82%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-89	-2.065e+02	0.0000	1489.0	75.89%	922.6	53.91%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-89	-2.055e+02	0.0000	1274.0	64.93%	725.2	42.38%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-89	-2.055e+02	0.0000	1568.0	79.92%	1002.8	58.60%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-89	-2.052e+02	0.0000	1822.0	92.86%	1294.6	75.65%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-88	-2.047e+02	0.0000	1602.0	81.65%	1038.4	60.68%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-88	-2.040e+02	0.0000	1311.0	66.82%	759.8	44.40%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-88	-2.038e+02	0.0000	1714.0	87.36%	1162.9	67.96%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-88	-2.030e+02	0.0000	1744.0	88.89%	1198.3	70.03%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-87	-2.020e+02	0.0000	1383.0	70.49%	826.1	48.28%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-87	-2.018e+02	0.0000	1812.0	92.35%	1284.6	75.07%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-87	-2.014e+02	0.0000	1761.0	89.76%	1220.9	71.34%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-87	-2.012e+02	0.0000	1911.0	97.40%	1430.5	83.60%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-87	-2.011e+02	0.0000	1852.0	94.39%	1339.4	78.27%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-87	-2.004e+02	0.0000	1391.0	70.90%	835.1	48.80%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-86	-2.003e+02	0.0000	1914.0	97.55%	1436.9	83.97%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-86	-1.998e+02	0.0000	1776.0	90.52%	1240.7	72.50%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-86	-1.996e+02	0.0000	1454.0	74.11%	895.0	52.30%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-86	-1.993e+02	0.0000	1335.0	68.04%	785.8	45.92%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-86	-1.993e+02	0.0000	1898.0	96.74%	1410.5	82.43%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-85	-1.972e+02	0.0000	1765.0	89.96%	1229.3	71.84%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-85	-1.970e+02	0.0000	1820.0	92.76%	1299.9	75.96%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-85	-1.967e+02	0.0000	1480.0	75.43%	923.2	53.95%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-85	-1.966e+02	0.0000	1341.0	68.35%	793.3	46.36%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-85	-1.964e+02	0.0000	1595.0	81.29%	1039.3	60.73%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-85	-1.962e+02	0.0000	1589.0	80.99%	1033.2	60.38%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-85	-1.959e+02	0.0000	1191.0	60.70%	664.0	38.80%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-84	-1.951e+02	0.0000	1786.0	91.03%	1257.7	73.50%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-84	-1.950e+02	0.0000	1624.0	82.77%	1071.7	62.63%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-84	-1.947e+02	0.0000	1075.0	54.79%	569.4	33.27%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-84	-1.945e+02	0.0000	1675.0	85.37%	1127.6	65.89%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-84	-1.938e+02	0.0000	1479.0	75.38%	925.6	54.09%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-84	-1.936e+02	0.0000	1435.0	73.14%	883.4	51.62%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-83	-1.931e+02	0.0000	1469.0	74.87%	916.9	53.58%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-83	-1.929e+02	0.0000	1804.0	91.95%	1282.9	74.97%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-83	-1.925e+02	0.0000	1567.0	79.87%	1014.7	59.29%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-82	-1.910e+02	0.0000	1824.0	92.97%	1310.9	76.61%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-82	-1.896e+02	0.0000	1826.0	93.07%	1314.8	76.84%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-82	-1.893e+02	0.0000	1652.0	84.20%	1107.5	64.72%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-82	-1.892e+02	0.0000	1547.0	78.85%	997.1	58.27%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-82	-1.891e+02	0.0000	1307.0	66.62%	770.4	45.02%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-81	-1.877e+02	0.0000	1457.0	74.26%	910.7	53.22%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-81	-1.876e+02	0.0000	1932.0	98.47%	1480.4	86.51%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-81	-1.876e+02	0.0000	1843.0	93.93%	1339.6	78.28%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-81	-1.868e+02	0.0000	1202.0	61.26%	681.7	39.84%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-80	-1.862e+02	0.0000	1741.0	88.74%	1211.8	70.82%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-80	-1.857e+02	0.0000	1707.0	87.00%	1172.5	68.52%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-80	-1.855e+02	0.0000	1922.0	97.96%	1463.8	85.54%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-80	-1.855e+02	0.0000	1557.0	79.36%	1011.1	59.08%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-80	-1.855e+02	0.0000	1463.0	74.57%	918.1	53.65%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-80	-1.855e+02	0.0000	1464.0	74.62%	919.6	53.74%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-80	-1.853e+02	0.0000	1730.0	88.18%	1199.2	70.08%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-80	-1.850e+02	0.0000	1839.0	93.73%	1336.3	78.09%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-80	-1.843e+02	0.0000	1757.0	89.55%	1232.1	72.00%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-79	-1.837e+02	0.0000	1458.0	74.31%	915.4	53.49%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-79	-1.836e+02	0.0000	1376.0	70.13%	838.2	48.98%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-79	-1.828e+02	0.0000	1915.0	97.60%	1453.8	84.96%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-79	-1.828e+02	0.0000	1565.0	79.77%	1022.5	59.75%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-79	-1.825e+02	0.0000	1343.0	68.45%	809.6	47.31%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-79	-1.822e+02	0.0000	1077.0	54.89%	582.4	34.03%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-79	-1.821e+02	0.0000	1787.0	91.08%	1271.9	74.33%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-78	-1.816e+02	0.0000	1391.0	70.90%	854.8	49.95%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-78	-1.814e+02	0.0000	1639.0	83.54%	1101.5	64.37%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-78	-1.813e+02	0.0000	1757.0	89.55%	1236.0	72.23%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-78	-1.804e+02	0.0000	1886.0	96.13%	1408.1	82.29%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-78	-1.798e+02	0.0000	1497.0	76.30%	957.4	55.95%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-77	-1.791e+02	0.0000	1906.0	97.15%	1441.3	84.23%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-77	-1.787e+02	0.0000	1797.0	91.59%	1287.0	75.21%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-77	-1.787e+02	0.0000	1922.0	97.96%	1469.6	85.88%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-77	-1.782e+02	0.0000	1414.0	72.07%	879.2	51.38%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-77	-1.779e+02	0.0000	1500.0	76.45%	962.6	56.25%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-76	-1.772e+02	0.0000	1702.0	86.75%	1175.4	68.69%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-76	-1.772e+02	0.0000	1940.0	98.88%	1505.5	87.98%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-76	-1.770e+02	0.0000	1493.0	76.10%	956.7	55.91%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-76	-1.765e+02	0.0000	1879.0	95.77%	1401.4	81.89%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-76	-1.760e+02	0.0000	855.0	43.58%	417.2	24.38%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-76	-1.760e+02	0.0000	1340.0	68.30%	813.2	47.52%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-76	-1.759e+02	0.0000	1440.0	73.39%	906.9	53.00%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-76	-1.752e+02	0.0000	1050.0	53.52%	567.7	33.17%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-75	-1.747e+02	0.0000	1606.0	81.86%	1073.9	62.76%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-75	-1.741e+02	0.0000	1461.0	74.46%	928.3	54.25%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-75	-1.739e+02	0.0000	1276.0	65.04%	758.1	44.30%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-74	-1.720e+02	0.0000	1892.0	96.43%	1425.0	83.27%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-74	-1.717e+02	0.0000	1413.0	72.02%	885.1	51.72%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-74	-1.716e+02	0.0000	1570.0	80.02%	1039.7	60.76%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-74	-1.715e+02	0.0000	1232.0	62.79%	722.4	42.22%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-74	-1.711e+02	0.0000	1311.0	66.82%	792.7	46.32%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-74	-1.710e+02	0.0000	1276.0	65.04%	761.1	44.48%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-74	-1.705e+02	0.0000	1218.0	62.08%	711.3	41.56%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-73	-1.703e+02	0.0000	1153.0	58.77%	656.4	38.36%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-73	-1.702e+02	0.0000	1750.0	89.19%	1238.0	72.35%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-73	-1.699e+02	0.0000	1637.0	83.44%	1111.1	64.93%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-73	-1.695e+02	0.0000	1561.0	79.56%	1032.9	60.36%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-73	-1.692e+02	0.0000	1873.0	95.46%	1399.8	81.80%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-73	-1.682e+02	0.0000	1474.0	75.13%	947.6	55.37%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-73	-1.681e+02	0.0000	1943.0	99.03%	1519.3	88.79%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-72	-1.680e+02	0.0000	1345.0	68.55%	826.4	48.29%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-72	-1.679e+02	0.0000	1455.0	74.16%	929.7	54.33%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-72	-1.673e+02	0.0000	1079.0	54.99%	598.4	34.97%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-72	-1.671e+02	0.0000	1898.0	96.74%	1439.5	84.12%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-72	-1.670e+02	0.0000	1829.0	93.22%	1340.4	78.33%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-72	-1.670e+02	0.0000	1906.0	97.15%	1452.5	84.88%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-72	-1.669e+02	0.0000	1597.0	81.40%	1072.7	62.69%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-72	-1.667e+02	0.0000	1255.0	63.97%	747.9	43.71%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-72	-1.666e+02	0.0000	1099.0	56.01%	615.2	35.95%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-72	-1.660e+02	0.0000	982.0	50.05%	522.4	30.53%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-72	-1.658e+02	0.0000	969.0	49.39%	512.3	29.94%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-71	-1.656e+02	0.0000	1530.0	77.98%	1005.2	58.74%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-71	-1.652e+02	0.0000	1844.0	93.99%	1362.1	79.59%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-71	-1.647e+02	0.0000	1611.0	82.11%	1089.8	63.68%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-71	-1.642e+02	0.0000	1917.0	97.71%	1473.1	86.09%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-71	-1.642e+02	0.0000	1305.0	66.51%	794.0	46.40%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-70	-1.631e+02	0.0000	1360.0	69.32%	845.9	49.43%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-70	-1.630e+02	0.0000	1592.0	81.14%	1071.1	62.59%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-70	-1.623e+02	0.0000	1890.0	96.33%	1431.0	83.63%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-70	-1.615e+02	0.0000	1570.0	80.02%	1050.7	61.40%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-69	-1.602e+02	0.0000	1362.0	69.42%	850.3	49.69%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-69	-1.596e+02	0.0000	1934.0	98.57%	1509.0	88.18%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-69	-1.595e+02	0.0000	1278.0	65.14%	775.4	45.31%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-69	-1.595e+02	0.0000	1807.0	92.10%	1319.4	77.10%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-69	-1.589e+02	0.0000	1177.0	59.99%	688.5	40.23%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-69	-1.589e+02	0.0000	1368.0	69.72%	857.6	50.11%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-68	-1.587e+02	0.0000	1066.0	54.33%	596.3	34.84%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-68	-1.586e+02	0.0000	1704.0	86.85%	1197.4	69.97%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-68	-1.574e+02	0.0000	1881.0	95.87%	1422.3	83.12%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-68	-1.567e+02	0.0000	1465.0	74.67%	951.2	55.59%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-67	-1.563e+02	0.0000	1131.0	57.65%	652.1	38.11%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-67	-1.555e+02	0.0000	920.0	46.89%	484.9	28.34%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-67	-1.550e+02	0.0000	1206.0	61.47%	717.3	41.92%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-67	-1.546e+02	0.0000	977.0	49.80%	529.2	30.93%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-66	-1.536e+02	0.0000	1118.0	56.98%	644.1	37.64%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-66	-1.533e+02	0.0000	1858.0	94.70%	1393.8	81.45%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-66	-1.527e+02	0.0000	1210.0	61.67%	723.1	42.25%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-65	-1.509e+02	0.0000	1311.0	66.82%	814.9	47.62%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-65	-1.508e+02	0.0000	1398.0	71.25%	895.0	52.30%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-65	-1.501e+02	0.0000	912.0	46.48%	483.1	28.23%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-65	-1.499e+02	0.0000	1182.0	60.24%	702.7	41.07%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-64	-1.495e+02	0.0000	1317.0	67.13%	821.8	48.02%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-64	-1.488e+02	0.0000	1555.0	79.26%	1049.9	61.36%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-64	-1.487e+02	0.0000	1389.0	70.80%	888.5	51.92%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-64	-1.483e+02	0.0000	1343.0	68.45%	846.4	49.46%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-64	-1.480e+02	0.0000	1242.0	63.30%	756.1	44.19%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-64	-1.479e+02	0.0000	1277.0	65.09%	787.3	46.01%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-64	-1.477e+02	0.0000	1270.0	64.73%	781.4	45.66%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-63	-1.461e+02	0.0000	1009.0	51.43%	563.7	32.94%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-62	-1.449e+02	0.0000	1394.0	71.05%	897.9	52.47%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-62	-1.444e+02	0.0000	860.0	43.83%	450.0	26.30%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-62	-1.430e+02	0.0000	1651.0	84.15%	1156.3	67.57%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-61	-1.426e+02	0.0000	1278.0	65.14%	794.6	46.43%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-61	-1.414e+02	0.0000	1949.0	99.34%	1555.7	90.91%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-61	-1.406e+02	0.0000	1254.0	63.91%	775.3	45.31%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-60	-1.403e+02	0.0000	1875.0	95.57%	1430.6	83.60%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-60	-1.401e+02	0.0000	1058.0	53.92%	609.9	35.64%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-60	-1.392e+02	0.0000	1148.0	58.51%	685.3	40.05%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-60	-1.391e+02	0.0000	1669.0	85.07%	1180.7	68.99%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-60	-1.390e+02	0.0000	1236.0	63.00%	761.4	44.49%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-59	-1.376e+02	0.0000	969.0	49.39%	541.0	31.61%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-59	-1.369e+02	0.0000	882.0	44.95%	473.4	27.67%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-59	-1.361e+02	0.0000	1927.0	98.22%	1516.7	88.63%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-58	-1.358e+02	0.0000	1935.0	98.62%	1531.1	89.48%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-58	-1.347e+02	0.0000	1155.0	58.87%	696.6	40.71%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-58	-1.344e+02	0.0000	1952.0	99.49%	1568.9	91.68%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-57	-1.332e+02	0.0000	1147.0	58.46%	691.1	40.38%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-57	-1.326e+02	0.0000	1801.0	91.79%	1340.5	78.34%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-57	-1.322e+02	0.0000	1892.0	96.43%	1463.4	85.51%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-57	-1.321e+02	0.0000	886.0	45.16%	481.7	28.15%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-57	-1.317e+02	0.0000	1071.0	54.59%	629.7	36.80%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-57	-1.315e+02	0.0000	798.0	40.67%	415.7	24.30%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-57	-1.314e+02	0.0000	1134.0	57.80%	682.9	39.91%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-57	-1.313e+02	0.0000	1857.0	94.65%	1414.4	82.65%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-56	-1.311e+02	0.0000	1105.0	56.32%	658.9	38.50%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-56	-1.311e+02	0.0000	1036.0	52.80%	601.3	35.14%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-56	-1.306e+02	0.0000	1028.0	52.40%	595.7	34.81%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-55	-1.288e+02	0.0000	1085.0	55.30%	644.5	37.66%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-55	-1.279e+02	0.0000	933.0	47.55%	522.5	30.53%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-55	-1.277e+02	0.0000	1008.0	51.38%	582.8	34.06%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-55	-1.274e+02	0.0000	1037.0	52.85%	606.9	35.46%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-54	-1.261e+02	0.0000	1223.0	62.33%	765.3	44.72%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-54	-1.260e+02	0.0000	1035.0	52.75%	606.5	35.44%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-54	-1.256e+02	0.0000	1418.0	72.27%	944.0	55.16%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-54	-1.252e+02	0.0000	952.0	48.52%	540.3	31.57%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-54	-1.245e+02	0.0000	1050.0	53.52%	621.0	36.29%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-54	-1.243e+02	0.0000	1249.0	63.66%	791.0	46.22%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-51	-1.195e+02	0.0000	1055.0	53.77%	630.4	36.84%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-51	-1.195e+02	0.0000	1241.0	63.25%	789.2	46.12%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-51	-1.182e+02	0.0000	1961.0	99.95%	1607.2	93.92%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-51	-1.179e+02	0.0000	834.0	42.51%	456.1	26.65%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-50	-1.172e+02	0.0000	1115.0	56.83%	683.8	39.96%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-50	-1.171e+02	0.0000	1072.0	54.64%	647.6	37.85%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-50	-1.166e+02	0.0000	931.0	47.45%	533.4	31.17%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-50	-1.165e+02	0.0000	922.0	46.99%	526.8	30.79%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-50	-1.163e+02	0.0000	1383.0	70.49%	922.6	53.92%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-50	-1.160e+02	0.0000	507.0	25.84%	225.2	13.16%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-50	-1.155e+02	0.0000	1031.0	52.55%	615.0	35.94%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-49	-1.144e+02	0.0000	1954.0	99.59%	1590.9	92.97%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-49	-1.138e+02	0.0000	1218.0	62.08%	776.1	45.35%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-49	-1.136e+02	0.0000	886.0	45.16%	501.8	29.32%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-49	-1.131e+02	0.0000	761.0	38.79%	406.0	23.73%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-48	-1.124e+02	0.0000	1002.0	51.07%	595.4	34.79%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-48	-1.115e+02	0.0000	632.0	32.21%	314.8	18.39%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-47	-1.103e+02	0.0000	827.0	42.15%	459.5	26.85%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-47	-1.097e+02	0.0000	821.0	41.85%	455.3	26.61%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-47	-1.097e+02	0.0000	902.0	45.97%	518.7	30.31%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-47	-1.094e+02	0.0000	707.0	36.03%	370.0	21.62%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-46	-1.073e+02	0.0000	522.0	26.61%	242.4	14.17%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-46	-1.072e+02	0.0000	946.0	48.22%	556.9	32.54%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-46	-1.071e+02	0.0000	1957.0	99.75%	1604.3	93.75%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-46	-1.065e+02	0.0000	1206.0	61.47%	775.7	45.33%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-46	-1.062e+02	0.0000	852.0	43.43%	483.3	28.24%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-45	-1.053e+02	0.0000	521.0	26.55%	243.2	14.21%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-45	-1.045e+02	0.0000	742.0	37.82%	401.5	23.46%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-45	-1.045e+02	0.0000	624.0	31.80%	316.0	18.46%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-44	-1.026e+02	0.0000	895.0	45.62%	521.5	30.47%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-44	-1.020e+02	0.0000	1092.0	55.66%	683.9	39.97%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-43	-9.978e+01	0.0000	549.0	27.98%	267.7	15.64%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-42	-9.853e+01	0.0000	825.0	42.05%	471.8	27.57%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-42	-9.831e+01	0.0000	441.0	22.48%	197.0	11.51%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-42	-9.824e+01	0.0000	758.0	38.63%	420.0	24.55%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-42	-9.685e+01	0.0000	790.0	40.27%	446.8	26.11%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-41	-9.519e+01	0.0000	777.0	39.60%	438.1	25.60%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-41	-9.516e+01	0.0000	560.0	28.54%	279.9	16.36%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-41	-9.494e+01	0.0000	674.0	34.35%	361.2	21.11%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-41	-9.479e+01	0.0000	548.0	27.93%	271.4	15.86%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-40	-9.300e+01	0.0000	591.0	30.12%	303.6	17.74%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-40	-9.251e+01	0.0000	485.0	24.72%	230.9	13.49%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-39	-9.043e+01	0.0000	1139.0	58.05%	739.2	43.20%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-38	-8.945e+01	0.0000	690.0	35.17%	379.2	22.16%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-38	-8.925e+01	0.0000	752.0	38.33%	426.1	24.90%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-38	-8.902e+01	0.0000	1185.0	60.40%	782.0	45.70%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-38	-8.899e+01	0.0000	646.0	32.93%	348.0	20.33%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-38	-8.889e+01	0.0000	1330.0	67.79%	911.7	53.27%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-37	-8.626e+01	0.0000	650.0	33.13%	353.3	20.65%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-37	-8.576e+01	0.0000	1948.0	99.29%	1602.6	93.65%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-37	-8.564e+01	0.0000	590.0	30.07%	310.4	18.14%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-36	-8.518e+01	0.0000	698.0	35.58%	390.7	22.83%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-36	-8.511e+01	0.0000	494.0	25.18%	243.8	14.25%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-36	-8.466e+01	0.0000	836.0	42.61%	498.0	29.10%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-36	-8.351e+01	0.0000	602.0	30.68%	321.1	18.76%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-36	-8.306e+01	0.0000	561.0	28.59%	292.1	17.07%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-35	-8.221e+01	0.0000	809.0	41.23%	479.0	27.99%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-35	-8.162e+01	0.0000	822.0	41.90%	490.1	28.64%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-35	-8.070e+01	0.0000	1260.0	64.22%	860.1	50.26%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-34	-8.027e+01	0.0000	554.0	28.24%	290.9	17.00%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-34	-8.020e+01	0.0000	749.0	38.18%	435.5	25.45%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-34	-8.019e+01	0.0000	590.0	30.07%	316.9	18.52%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-34	-7.964e+01	0.0000	539.0	27.47%	280.3	16.38%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-34	-7.950e+01	0.0000	486.0	24.77%	243.6	14.24%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-34	-7.949e+01	0.0000	753.0	38.38%	439.2	25.67%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-34	-7.915e+01	0.0000	755.0	38.48%	441.7	25.81%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-34	-7.881e+01	0.0000	793.0	40.42%	471.5	27.55%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-34	-7.845e+01	0.0000	601.0	30.63%	326.9	19.10%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-33	-7.780e+01	0.0000	305.0	15.55%	126.6	7.40%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-33	-7.754e+01	0.0000	533.0	27.17%	278.5	16.27%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-33	-7.670e+01	0.0000	875.0	44.60%	539.5	31.52%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-33	-7.657e+01	0.0000	640.0	32.62%	357.3	20.88%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-33	-7.654e+01	0.0000	980.0	49.95%	625.0	36.52%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-33	-7.646e+01	0.0000	625.0	31.86%	346.9	20.27%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-33	-7.615e+01	0.0000	966.0	49.24%	614.2	35.89%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-33	-7.601e+01	0.0000	687.0	35.02%	393.5	22.99%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-32	-7.381e+01	0.0000	622.0	31.70%	347.2	20.29%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-31	-7.353e+01	0.0000	651.0	33.18%	369.3	21.58%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-31	-7.314e+01	0.0000	657.0	33.49%	374.2	21.86%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-31	-7.215e+01	0.0000	650.0	33.13%	370.3	21.64%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-31	-7.205e+01	0.0000	544.0	27.73%	292.4	17.09%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-31	-7.198e+01	0.0000	659.0	33.59%	378.0	22.09%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-30	-7.111e+01	0.0000	782.0	39.86%	473.6	27.68%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-30	-7.007e+01	0.0000	686.0	34.96%	400.2	23.38%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-30	-6.926e+01	0.0000	609.0	31.04%	343.8	20.09%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-30	-6.925e+01	0.0000	389.0	19.83%	187.3	10.94%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-30	-6.909e+01	0.0000	323.0	16.46%	144.9	8.47%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-29	-6.865e+01	0.0000	640.0	32.62%	367.7	21.49%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-29	-6.858e+01	0.0000	367.0	18.71%	173.3	10.13%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-29	-6.730e+01	0.0000	330.0	16.82%	150.3	8.78%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-28	-6.609e+01	0.0000	1013.0	51.63%	669.8	39.14%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-28	-6.580e+01	0.0000	595.0	30.33%	337.3	19.71%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-28	-6.544e+01	0.0000	589.0	30.02%	333.6	19.50%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-28	-6.529e+01	0.0000	646.0	32.93%	376.7	22.01%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-28	-6.501e+01	0.0000	330.0	16.82%	152.2	8.90%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-27	-6.299e+01	0.0000	154.0	7.85%	49.2	2.88%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-27	-6.285e+01	0.0000	1958.0	99.80%	1645.2	96.14%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-27	-6.276e+01	0.0000	280.0	14.27%	122.2	7.14%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-26	-6.141e+01	0.0000	305.0	15.55%	139.2	8.13%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-26	-6.109e+01	0.0000	415.0	21.15%	213.6	12.48%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-25	-5.987e+01	0.0000	670.0	34.15%	402.5	23.52%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-25	-5.902e+01	0.0000	460.0	23.45%	247.1	14.44%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-25	-5.868e+01	0.0000	451.0	22.99%	241.8	14.13%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-25	-5.781e+01	0.0000	531.0	27.06%	300.2	17.54%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-24	-5.737e+01	0.0000	634.0	32.31%	378.5	22.12%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-24	-5.708e+01	0.0000	512.0	26.10%	287.3	16.79%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-24	-5.566e+01	0.0000	360.0	18.35%	181.4	10.60%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-24	-5.566e+01	0.0000	360.0	18.35%	181.4	10.60%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-23	-5.470e+01	0.0000	288.0	14.68%	134.7	7.87%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-23	-5.444e+01	0.0000	533.0	27.17%	306.0	17.88%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-23	-5.361e+01	0.0000	367.0	18.71%	188.1	10.99%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-23	-5.321e+01	0.0000	388.0	19.78%	203.6	11.90%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-23	-5.312e+01	0.0000	135.0	6.88%	44.4	2.59%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-23	-5.306e+01	0.0000	313.0	15.95%	152.0	8.88%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-22	-5.242e+01	0.0000	352.0	17.94%	179.9	10.51%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-22	-5.135e+01	0.0000	343.0	17.48%	174.7	10.21%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-21	-4.957e+01	0.0000	104.0	5.30%	30.6	1.79%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-20	-4.707e+01	0.0000	339.0	17.28%	176.4	10.31%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-20	-4.677e+01	0.0000	513.0	26.15%	302.5	17.68%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-20	-4.659e+01	0.0000	423.0	21.56%	236.6	13.83%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-20	-4.647e+01	0.0000	294.0	14.98%	146.9	8.59%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-20	-4.628e+01	0.0000	259.0	13.20%	123.4	7.21%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-19	-4.557e+01	0.0000	358.0	18.25%	191.9	11.22%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-19	-4.548e+01	0.0000	285.0	14.53%	141.4	8.26%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-19	-4.546e+01	0.0000	447.0	22.78%	255.2	14.91%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-19	-4.523e+01	0.0000	217.0	11.06%	97.3	5.68%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-19	-4.451e+01	0.0000	383.0	19.52%	210.9	12.32%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-18	-4.329e+01	0.0000	324.0	16.51%	170.9	9.99%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-18	-4.248e+01	0.0000	295.0	15.04%	151.2	8.83%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-17	-4.117e+01	0.0000	346.0	17.64%	188.3	11.00%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-17	-4.103e+01	0.0000	242.0	12.33%	117.1	6.85%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-17	-4.103e+01	0.0000	242.0	12.33%	117.1	6.85%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-17	-4.049e+01	0.0000	157.0	8.00%	64.8	3.78%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-16	-3.901e+01	0.0000	295.0	15.04%	155.4	9.08%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-16	-3.858e+01	0.0000	330.0	16.82%	180.3	10.54%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-16	-3.848e+01	0.0000	444.0	22.63%	263.1	15.37%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-16	-3.741e+01	0.0000	285.0	14.53%	150.2	8.78%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-16	-3.711e+01	0.0000	402.0	20.49%	234.4	13.70%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-16	-3.702e+01	0.0000	261.0	13.30%	134.7	7.87%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-15	-3.665e+01	0.0000	420.0	21.41%	248.7	14.53%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-15	-3.626e+01	0.0000	168.0	8.56%	74.1	4.33%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-15	-3.593e+01	0.0000	237.0	12.08%	119.1	6.96%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-15	-3.533e+01	0.0000	215.0	10.96%	105.5	6.17%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-14	-3.360e+01	0.0000	242.0	12.33%	125.2	7.31%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-14	-3.331e+01	0.0000	259.0	13.20%	137.3	8.02%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-14	-3.235e+01	0.0000	234.0	11.93%	121.8	7.11%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-13	-3.216e+01	0.0000	82.0	4.18%	27.9	1.63%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-12	-2.989e+01	0.0000	218.0	11.11%	113.9	6.65%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-12	-2.830e+01	0.0000	202.0	10.30%	104.3	6.09%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-11	-2.697e+01	0.0000	243.0	12.39%	134.1	7.84%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-11	-2.590e+01	0.0000	368.0	18.76%	227.7	13.31%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-10	-2.456e+01	0.0000	234.0	11.93%	131.2	7.67%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-10	-2.417e+01	0.0000	141.0	7.19%	68.1	3.98%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-9	-2.104e+01	0.0000	105.0	5.35%	48.2	2.82%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-8	-2.056e+01	0.0000	153.0	7.80%	80.9	4.73%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-7	-1.729e+01	0.0000	122.0	6.22%	63.9	3.73%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-7	-1.639e+01	0.0000	165.0	8.41%	94.8	5.54%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-6	-1.548e+01	0.0000	139.0	7.08%	77.6	4.54%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-6	-1.533e+01	0.0000	58.0	2.96%	24.7	1.44%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-6	-1.498e+01	0.0000	106.0	5.40%	55.4	3.24%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-6	-1.431e+01	0.0000	55.0	2.80%	23.7	1.38%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-5	-1.311e+01	0.0000	193.0	9.84%	120.8	7.06%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.254e+01	0.0000	67.0	3.41%	32.1	1.88%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-5	-1.178e+01	0.0000	58.0	2.96%	27.8	1.63%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-4	-1.094e+01	0.0000	111.0	5.66%	64.7	3.78%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-4	-1.014e+01	0.0000	57.0	2.91%	28.1	1.64%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-4	-9.816e+00	0.0001	67.0	3.41%	35.4	2.07%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-4	-9.604e+00	0.0001	170.0	8.66%	111.0	6.48%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-4	-9.533e+00	0.0001	25.0	1.27%	9.4	0.55%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-7.230e+00	0.0007	46.0	2.34%	24.3	1.42%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-2	-5.244e+00	0.0053	35.0	1.78%	19.9	1.16%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-2	-4.735e+00	0.0088	101.0	5.15%	69.2	4.05%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.990e+00	0.1374	13.0	0.66%	8.7	0.51%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.657e+00	0.1911	20.0	1.02%	14.3	0.83%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.000e+00	0.3677	32.0	1.63%	26.9	1.57%