Information for 7-AGGCTATTAC (Motif 25)

C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C
Reverse Opposite:
A T C G A C G T C G T A C G T A C G A T C G T A A C T G A G T C A G T C A C G T
p-value:1e-95
log p-value:-2.194e+02
Information Content per bp:1.911
Number of Target Sequences with motif1538.0
Percentage of Target Sequences with motif78.39%
Number of Background Sequences with motif958.8
Percentage of Background Sequences with motif56.03%
Average Position of motif in Targets3560.4 +/- 3840.7bp
Average Position of motif in Background2126.0 +/- 2110.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0015.1_Crx/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGCTATTAC------
AGGCTAATCCCCAANG
 C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTATTAC
AAGGATATNTN
 A C G T C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGCTATTAC
AAGGCAAGTGT
 A C G T C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGCTATTAC------
-GACTTTTAWTTTGAA
 C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGGCTATTAC
--GCTAATCC
 C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGGCTATTAC--
--GCTAATCCCC
 C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGCTATTAC-
-GGCCATTAAC
 C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGCTATTAC
-NGCTN----
 C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGGCTATTAC----
GNNAGCTAATCCCCCN
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C A C G T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGCTATTAC-----
AATCGTTAATCCCTTTA
 A C G T A C G T C G T A A C T G A C T G A G T C A C G T C G T A C G A T A C G T G T C A A T G C A C G T A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C