Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1716)	% of Background Sequences with Motif
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-138	-3.181e+02	0.0000	1812.0	92.35%	1186.1	69.14%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-133	-3.080e+02	0.0000	1817.0	92.61%	1201.6	70.05%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-128	-2.966e+02	0.0000	1778.0	90.62%	1159.3	67.58%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-126	-2.903e+02	0.0000	1651.0	84.15%	1015.3	59.18%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-125	-2.881e+02	0.0000	1596.0	81.35%	958.7	55.88%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-124	-2.865e+02	0.0000	1538.0	78.39%	900.3	52.48%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-120	-2.783e+02	0.0000	1379.0	70.29%	756.8	44.12%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-118	-2.722e+02	0.0000	1783.0	90.88%	1186.9	69.19%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-117	-2.702e+02	0.0000	1832.0	93.37%	1253.9	73.09%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-116	-2.686e+02	0.0000	1489.0	75.89%	867.7	50.58%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-116	-2.681e+02	0.0000	1862.0	94.90%	1298.6	75.70%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-116	-2.681e+02	0.0000	1822.0	92.86%	1241.7	72.38%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-115	-2.671e+02	0.0000	1872.0	95.41%	1314.6	76.63%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-115	-2.661e+02	0.0000	1341.0	68.35%	732.1	42.67%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-115	-2.657e+02	0.0000	1668.0	85.02%	1055.9	61.55%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-113	-2.612e+02	0.0000	1025.0	52.24%	478.8	27.91%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-112	-2.596e+02	0.0000	1620.0	82.57%	1008.9	58.81%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-112	-2.588e+02	0.0000	1624.0	82.77%	1013.9	59.10%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-111	-2.561e+02	0.0000	1600.0	81.55%	990.3	57.73%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-111	-2.558e+02	0.0000	1678.0	85.52%	1075.3	62.68%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-110	-2.540e+02	0.0000	1602.0	81.65%	995.0	58.00%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-110	-2.538e+02	0.0000	1714.0	87.36%	1118.3	65.19%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-110	-2.538e+02	0.0000	1783.0	90.88%	1202.3	70.08%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-109	-2.531e+02	0.0000	1788.0	91.13%	1209.4	70.50%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-109	-2.526e+02	0.0000	1725.0	87.92%	1132.4	66.01%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-108	-2.503e+02	0.0000	1345.0	68.55%	749.8	43.71%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-107	-2.483e+02	0.0000	1720.0	87.67%	1130.4	65.90%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-107	-2.483e+02	0.0000	1810.0	92.25%	1242.1	72.40%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-107	-2.479e+02	0.0000	1445.0	73.65%	843.1	49.15%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-107	-2.473e+02	0.0000	1644.0	83.79%	1045.4	60.94%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-107	-2.466e+02	0.0000	1879.0	95.77%	1342.2	78.24%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-106	-2.463e+02	0.0000	1454.0	74.11%	853.9	49.78%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-106	-2.447e+02	0.0000	1443.0	73.55%	844.8	49.24%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-106	-2.442e+02	0.0000	1525.0	77.73%	924.7	53.90%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-105	-2.427e+02	0.0000	1787.0	91.08%	1217.7	70.98%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-104	-2.410e+02	0.0000	1789.0	91.18%	1221.1	71.18%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-104	-2.403e+02	0.0000	1255.0	63.97%	679.5	39.61%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-103	-2.394e+02	0.0000	1487.0	75.79%	891.3	51.96%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-103	-2.390e+02	0.0000	1624.0	82.77%	1031.8	60.15%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-103	-2.375e+02	0.0000	1866.0	95.11%	1330.9	77.58%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-103	-2.374e+02	0.0000	1435.0	73.14%	843.1	49.15%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-102	-2.352e+02	0.0000	1311.0	66.82%	732.1	42.68%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-102	-2.351e+02	0.0000	1662.0	84.71%	1076.8	62.77%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-101	-2.347e+02	0.0000	1589.0	80.99%	998.6	58.21%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-101	-2.344e+02	0.0000	1620.0	82.57%	1031.7	60.14%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-101	-2.339e+02	0.0000	1568.0	79.92%	977.5	56.98%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-101	-2.333e+02	0.0000	1911.0	97.40%	1406.2	81.97%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-101	-2.328e+02	0.0000	1707.0	87.00%	1129.4	65.83%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-100	-2.318e+02	0.0000	1595.0	81.29%	1007.7	58.74%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-100	-2.315e+02	0.0000	1464.0	74.62%	876.6	51.10%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-100	-2.315e+02	0.0000	1804.0	91.95%	1249.3	72.83%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-100	-2.310e+02	0.0000	1761.0	89.76%	1195.9	69.71%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-100	-2.305e+02	0.0000	1750.0	89.19%	1182.4	68.92%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-99	-2.298e+02	0.0000	1278.0	65.14%	708.6	41.31%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-99	-2.292e+02	0.0000	1843.0	93.93%	1305.0	76.07%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-99	-2.287e+02	0.0000	1455.0	74.16%	870.6	50.75%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-99	-2.286e+02	0.0000	1628.0	82.98%	1045.4	60.94%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-99	-2.285e+02	0.0000	1820.0	92.76%	1273.4	74.23%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-98	-2.277e+02	0.0000	1815.0	92.51%	1267.4	73.88%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-98	-2.276e+02	0.0000	1932.0	98.47%	1450.9	84.58%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-98	-2.275e+02	0.0000	1892.0	96.43%	1379.5	80.42%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-98	-2.266e+02	0.0000	1815.0	92.51%	1268.8	73.96%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-98	-2.261e+02	0.0000	1759.0	89.65%	1197.9	69.83%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-98	-2.258e+02	0.0000	1786.0	91.03%	1231.0	71.76%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-97	-2.256e+02	0.0000	1417.0	72.22%	837.4	48.82%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-97	-2.253e+02	0.0000	1270.0	64.73%	705.2	41.11%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-97	-2.252e+02	0.0000	1730.0	88.18%	1163.4	67.82%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-97	-2.247e+02	0.0000	1274.0	64.93%	709.6	41.36%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-97	-2.245e+02	0.0000	1642.0	83.69%	1064.4	62.05%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-97	-2.244e+02	0.0000	1571.0	80.07%	989.5	57.68%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-97	-2.236e+02	0.0000	1343.0	68.45%	771.7	44.98%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-96	-2.230e+02	0.0000	1776.0	90.52%	1221.5	71.20%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-96	-2.229e+02	0.0000	1547.0	78.85%	966.6	56.34%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-96	-2.222e+02	0.0000	1567.0	79.87%	987.3	57.55%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-96	-2.218e+02	0.0000	1839.0	93.73%	1305.0	76.07%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-95	-2.206e+02	0.0000	1744.0	88.89%	1184.6	69.05%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-95	-2.199e+02	0.0000	1440.0	73.39%	864.6	50.40%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-95	-2.190e+02	0.0000	1639.0	83.54%	1066.9	62.19%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-94	-2.175e+02	0.0000	1469.0	74.87%	894.6	52.15%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-94	-2.175e+02	0.0000	1202.0	61.26%	654.1	38.13%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-94	-2.171e+02	0.0000	1757.0	89.55%	1203.5	70.16%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-94	-2.170e+02	0.0000	1565.0	79.77%	990.6	57.75%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-93	-2.163e+02	0.0000	1917.0	97.71%	1432.0	83.47%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-93	-2.161e+02	0.0000	1305.0	66.51%	744.5	43.40%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-93	-2.160e+02	0.0000	1822.0	92.86%	1287.0	75.03%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-93	-2.158e+02	0.0000	982.0	50.05%	480.3	28.00%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-93	-2.157e+02	0.0000	1464.0	74.62%	891.5	51.97%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-93	-2.156e+02	0.0000	1802.0	91.85%	1261.2	73.52%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-93	-2.151e+02	0.0000	1236.0	63.00%	685.2	39.94%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-93	-2.149e+02	0.0000	1670.0	85.12%	1104.1	64.36%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-93	-2.149e+02	0.0000	1906.0	97.15%	1413.7	82.41%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-93	-2.148e+02	0.0000	1765.0	89.96%	1215.8	70.87%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-93	-2.143e+02	0.0000	1384.0	70.54%	817.6	47.66%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-92	-2.135e+02	0.0000	1914.0	97.55%	1428.8	83.29%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-92	-2.135e+02	0.0000	1606.0	81.86%	1036.9	60.44%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-92	-2.127e+02	0.0000	1391.0	70.90%	825.4	48.11%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-92	-2.126e+02	0.0000	1713.0	87.31%	1155.8	67.38%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-92	-2.126e+02	0.0000	1356.0	69.11%	793.7	46.27%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-92	-2.121e+02	0.0000	1340.0	68.30%	779.1	45.42%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-91	-2.118e+02	0.0000	1844.0	93.99%	1321.3	77.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-91	-2.114e+02	0.0000	1510.0	76.96%	940.9	54.85%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-91	-2.106e+02	0.0000	1497.0	76.30%	928.1	54.10%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-91	-2.104e+02	0.0000	1542.0	78.59%	973.8	56.76%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-91	-2.097e+02	0.0000	1376.0	70.13%	814.8	47.50%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-91	-2.096e+02	0.0000	1637.0	83.44%	1073.6	62.58%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-90	-2.086e+02	0.0000	1669.0	85.07%	1109.8	64.70%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-90	-2.085e+02	0.0000	1463.0	74.57%	897.8	52.34%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-90	-2.081e+02	0.0000	1812.0	92.35%	1281.6	74.71%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-89	-2.065e+02	0.0000	1439.0	73.34%	876.2	51.07%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-89	-2.059e+02	0.0000	1570.0	80.02%	1006.1	58.65%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-89	-2.054e+02	0.0000	1177.0	59.99%	644.6	37.57%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-88	-2.047e+02	0.0000	1702.0	86.75%	1150.9	67.09%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-88	-2.044e+02	0.0000	1500.0	76.45%	938.0	54.68%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-88	-2.040e+02	0.0000	1474.0	75.13%	912.5	53.19%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-88	-2.039e+02	0.0000	1597.0	81.40%	1036.8	60.44%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-88	-2.039e+02	0.0000	1479.0	75.38%	917.6	53.49%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-88	-2.036e+02	0.0000	1341.0	68.35%	788.8	45.98%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-88	-2.036e+02	0.0000	1206.0	61.47%	670.4	39.08%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-88	-2.035e+02	0.0000	1493.0	76.10%	931.9	54.32%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-88	-2.032e+02	0.0000	1368.0	69.72%	813.4	47.41%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-88	-2.030e+02	0.0000	1383.0	70.49%	827.6	48.24%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-87	-2.024e+02	0.0000	1826.0	93.07%	1305.8	76.12%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-87	-2.023e+02	0.0000	1008.0	51.38%	511.0	29.79%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-87	-2.006e+02	0.0000	1218.0	62.08%	683.3	39.83%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-87	-2.005e+02	0.0000	1278.0	65.14%	735.2	42.86%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-86	-2.003e+02	0.0000	920.0	46.89%	446.0	26.00%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-86	-2.001e+02	0.0000	1307.0	66.62%	761.2	44.37%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-86	-1.996e+02	0.0000	1457.0	74.26%	900.8	52.51%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-86	-1.995e+02	0.0000	1824.0	92.97%	1305.8	76.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-86	-1.993e+02	0.0000	1794.0	91.44%	1266.9	73.85%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-86	-1.983e+02	0.0000	1465.0	74.67%	909.6	53.03%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-86	-1.980e+02	0.0000	1940.0	98.88%	1491.3	86.94%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-85	-1.976e+02	0.0000	1922.0	97.96%	1456.2	84.89%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-85	-1.973e+02	0.0000	1886.0	96.13%	1396.7	81.42%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-85	-1.971e+02	0.0000	1891.0	96.38%	1404.2	81.86%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-85	-1.971e+02	0.0000	1335.0	68.04%	789.8	46.04%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-85	-1.965e+02	0.0000	1461.0	74.46%	907.2	52.88%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-85	-1.964e+02	0.0000	1922.0	97.96%	1457.0	84.93%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-85	-1.958e+02	0.0000	1852.0	94.39%	1347.6	78.56%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-84	-1.956e+02	0.0000	1749.0	89.14%	1214.5	70.80%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-84	-1.946e+02	0.0000	1557.0	79.36%	1004.7	58.57%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-83	-1.929e+02	0.0000	1797.0	91.59%	1276.5	74.41%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-83	-1.928e+02	0.0000	1652.0	84.20%	1106.0	64.47%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-83	-1.918e+02	0.0000	1611.0	82.11%	1063.8	62.01%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-83	-1.916e+02	0.0000	1182.0	60.24%	661.4	38.56%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-83	-1.915e+02	0.0000	1066.0	54.33%	566.9	33.04%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-83	-1.912e+02	0.0000	1915.0	97.60%	1449.3	84.49%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-82	-1.909e+02	0.0000	1873.0	95.46%	1382.1	80.57%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-82	-1.904e+02	0.0000	1276.0	65.04%	743.6	43.35%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-82	-1.904e+02	0.0000	1530.0	77.98%	981.9	57.24%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-81	-1.887e+02	0.0000	1555.0	79.26%	1008.7	58.80%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-81	-1.882e+02	0.0000	1757.0	89.55%	1231.4	71.78%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-81	-1.875e+02	0.0000	1311.0	66.82%	777.5	45.32%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-81	-1.871e+02	0.0000	1854.0	94.50%	1358.8	79.21%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-81	-1.869e+02	0.0000	1414.0	72.07%	872.8	50.88%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-81	-1.868e+02	0.0000	1458.0	74.31%	914.4	53.30%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-81	-1.866e+02	0.0000	1807.0	92.10%	1295.3	75.51%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-80	-1.860e+02	0.0000	1592.0	81.14%	1049.8	61.20%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-80	-1.855e+02	0.0000	1311.0	66.82%	779.6	45.45%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-80	-1.850e+02	0.0000	1561.0	79.56%	1018.3	59.36%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-80	-1.848e+02	0.0000	1077.0	54.89%	581.8	33.92%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-80	-1.846e+02	0.0000	1934.0	98.57%	1490.4	86.88%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-79	-1.840e+02	0.0000	1455.0	74.16%	914.2	53.29%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-79	-1.836e+02	0.0000	1389.0	70.80%	852.7	49.70%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-79	-1.825e+02	0.0000	1391.0	70.90%	855.6	49.88%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-78	-1.817e+02	0.0000	1898.0	96.74%	1429.1	83.31%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-78	-1.812e+02	0.0000	1883.0	95.97%	1406.1	81.97%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-78	-1.809e+02	0.0000	1191.0	60.70%	679.5	39.61%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-78	-1.805e+02	0.0000	1675.0	85.37%	1144.7	66.73%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-78	-1.797e+02	0.0000	1148.0	58.51%	644.7	37.58%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-77	-1.795e+02	0.0000	1906.0	97.15%	1444.5	84.20%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-77	-1.795e+02	0.0000	1898.0	96.74%	1431.0	83.42%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-77	-1.795e+02	0.0000	1343.0	68.45%	814.4	47.47%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-77	-1.781e+02	0.0000	1741.0	88.74%	1222.5	71.26%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-77	-1.779e+02	0.0000	1085.0	55.30%	594.7	34.67%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-77	-1.775e+02	0.0000	1031.0	52.55%	551.3	32.14%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-76	-1.771e+02	0.0000	1418.0	72.27%	886.5	51.68%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-76	-1.763e+02	0.0000	1223.0	62.33%	711.2	41.46%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-75	-1.747e+02	0.0000	1881.0	95.87%	1409.7	82.18%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-75	-1.747e+02	0.0000	1943.0	99.03%	1517.1	88.43%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-75	-1.737e+02	0.0000	1595.0	81.29%	1065.6	62.11%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-75	-1.734e+02	0.0000	1704.0	86.85%	1184.3	69.04%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-75	-1.732e+02	0.0000	1829.0	93.22%	1337.2	77.95%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-75	-1.728e+02	0.0000	1079.0	54.99%	594.9	34.68%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-74	-1.723e+02	0.0000	1890.0	96.33%	1425.8	83.12%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-74	-1.716e+02	0.0000	1277.0	65.09%	763.9	44.53%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-74	-1.714e+02	0.0000	969.0	49.39%	508.8	29.66%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-74	-1.711e+02	0.0000	1036.0	52.80%	561.3	32.72%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-74	-1.710e+02	0.0000	1480.0	75.43%	952.6	55.53%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-74	-1.710e+02	0.0000	1858.0	94.70%	1379.6	80.42%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-74	-1.708e+02	0.0000	1673.0	85.27%	1152.0	67.15%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-74	-1.707e+02	0.0000	1398.0	71.25%	874.1	50.95%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-74	-1.707e+02	0.0000	1118.0	56.98%	628.1	36.62%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-73	-1.687e+02	0.0000	1058.0	53.92%	581.7	33.91%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-72	-1.673e+02	0.0000	834.0	42.51%	410.7	23.94%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-72	-1.662e+02	0.0000	1242.0	63.30%	738.7	43.06%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-72	-1.659e+02	0.0000	1147.0	58.46%	657.3	38.32%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-71	-1.639e+02	0.0000	1362.0	69.42%	848.4	49.45%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-70	-1.634e+02	0.0000	1075.0	54.79%	600.1	34.98%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-70	-1.631e+02	0.0000	977.0	49.80%	522.7	30.47%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-70	-1.631e+02	0.0000	1206.0	61.47%	710.6	41.42%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-70	-1.626e+02	0.0000	1131.0	57.65%	647.1	37.72%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-70	-1.623e+02	0.0000	1276.0	65.04%	772.3	45.02%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-70	-1.622e+02	0.0000	1071.0	54.59%	598.7	34.90%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-70	-1.614e+02	0.0000	1028.0	52.40%	564.3	32.89%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-70	-1.613e+02	0.0000	1952.0	99.49%	1549.8	90.34%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-69	-1.607e+02	0.0000	1413.0	72.02%	899.4	52.43%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-69	-1.606e+02	0.0000	1241.0	63.25%	743.7	43.35%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-69	-1.602e+02	0.0000	1317.0	67.13%	811.1	47.28%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-69	-1.601e+02	0.0000	1570.0	80.02%	1054.4	61.47%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-69	-1.589e+02	0.0000	886.0	45.16%	456.6	26.61%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-68	-1.587e+02	0.0000	855.0	43.58%	433.2	25.25%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-68	-1.580e+02	0.0000	1232.0	62.79%	738.3	43.04%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-68	-1.570e+02	0.0000	1383.0	70.49%	875.9	51.06%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-67	-1.562e+02	0.0000	1099.0	56.01%	627.8	36.60%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-67	-1.548e+02	0.0000	1875.0	95.57%	1419.5	82.75%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-67	-1.546e+02	0.0000	946.0	48.22%	506.7	29.54%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-66	-1.542e+02	0.0000	1009.0	51.43%	556.4	32.44%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-66	-1.537e+02	0.0000	1394.0	71.05%	889.5	51.85%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-66	-1.523e+02	0.0000	1050.0	53.52%	591.7	34.49%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-66	-1.522e+02	0.0000	1892.0	96.43%	1447.1	84.36%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-66	-1.521e+02	0.0000	1927.0	98.22%	1505.9	87.78%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-65	-1.519e+02	0.0000	931.0	47.45%	497.8	29.02%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-65	-1.518e+02	0.0000	852.0	43.43%	437.7	25.52%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-65	-1.518e+02	0.0000	1115.0	56.83%	645.6	37.64%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-65	-1.517e+02	0.0000	1153.0	58.77%	677.4	39.49%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-65	-1.516e+02	0.0000	742.0	37.82%	358.0	20.87%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-65	-1.515e+02	0.0000	1249.0	63.66%	760.1	44.31%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-65	-1.508e+02	0.0000	1037.0	52.85%	582.1	33.93%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-65	-1.506e+02	0.0000	1360.0	69.32%	861.9	50.24%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-64	-1.495e+02	0.0000	1155.0	58.87%	681.4	39.72%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-64	-1.495e+02	0.0000	902.0	45.97%	477.1	27.81%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-64	-1.483e+02	0.0000	707.0	36.03%	336.0	19.58%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-64	-1.479e+02	0.0000	1210.0	61.67%	730.4	42.58%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-64	-1.476e+02	0.0000	860.0	43.83%	447.0	26.06%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-63	-1.463e+02	0.0000	539.0	27.47%	224.3	13.08%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-63	-1.454e+02	0.0000	1935.0	98.62%	1526.4	88.98%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-62	-1.444e+02	0.0000	646.0	32.93%	296.4	17.28%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-62	-1.439e+02	0.0000	922.0	46.99%	498.7	29.07%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-62	-1.434e+02	0.0000	1961.0	99.95%	1590.6	92.72%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-62	-1.434e+02	0.0000	933.0	47.55%	507.8	29.60%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-61	-1.427e+02	0.0000	969.0	49.39%	536.5	31.28%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-61	-1.422e+02	0.0000	1105.0	56.32%	647.2	37.73%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-61	-1.413e+02	0.0000	1254.0	63.91%	776.9	45.29%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-60	-1.390e+02	0.0000	882.0	44.95%	472.1	27.52%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-60	-1.389e+02	0.0000	1134.0	57.80%	676.0	39.40%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-60	-1.382e+02	0.0000	1072.0	54.64%	624.1	36.38%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-59	-1.381e+02	0.0000	640.0	32.62%	297.6	17.35%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-59	-1.369e+02	0.0000	624.0	31.80%	287.8	16.78%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-59	-1.367e+02	0.0000	1651.0	84.15%	1166.5	68.00%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-59	-1.367e+02	0.0000	798.0	40.67%	411.6	23.99%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-58	-1.354e+02	0.0000	1002.0	51.07%	570.5	33.26%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-58	-1.339e+02	0.0000	1139.0	58.05%	685.4	39.96%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-57	-1.329e+02	0.0000	1949.0	99.34%	1566.0	91.29%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-57	-1.317e+02	0.0000	1092.0	55.66%	648.8	37.82%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-57	-1.316e+02	0.0000	1957.0	99.75%	1587.1	92.52%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-56	-1.305e+02	0.0000	912.0	46.48%	504.2	29.39%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-56	-1.295e+02	0.0000	698.0	35.58%	345.2	20.12%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-56	-1.293e+02	0.0000	1055.0	53.77%	620.8	36.19%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-56	-1.291e+02	0.0000	1801.0	91.79%	1347.8	78.57%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-55	-1.288e+02	0.0000	777.0	39.60%	403.3	23.51%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-55	-1.282e+02	0.0000	749.0	38.18%	383.4	22.35%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-54	-1.260e+02	0.0000	602.0	30.68%	281.7	16.42%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-54	-1.257e+02	0.0000	1050.0	53.52%	620.7	36.18%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-54	-1.256e+02	0.0000	1218.0	62.08%	763.4	44.50%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-54	-1.251e+02	0.0000	836.0	42.61%	451.3	26.31%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-53	-1.237e+02	0.0000	895.0	45.62%	498.8	29.08%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-53	-1.232e+02	0.0000	1260.0	64.22%	803.3	46.83%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-52	-1.200e+02	0.0000	886.0	45.16%	495.8	28.90%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-51	-1.194e+02	0.0000	521.0	26.55%	232.1	13.53%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-51	-1.194e+02	0.0000	560.0	28.54%	258.7	15.08%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-50	-1.171e+02	0.0000	591.0	30.12%	281.3	16.40%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-50	-1.163e+02	0.0000	752.0	38.33%	397.9	23.19%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-50	-1.158e+02	0.0000	827.0	42.15%	454.6	26.50%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-50	-1.152e+02	0.0000	1954.0	99.59%	1593.6	92.89%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-49	-1.142e+02	0.0000	809.0	41.23%	442.3	25.78%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-49	-1.138e+02	0.0000	758.0	38.63%	404.7	23.59%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-49	-1.138e+02	0.0000	1185.0	60.40%	749.1	43.67%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-48	-1.118e+02	0.0000	590.0	30.07%	285.2	16.63%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-48	-1.116e+02	0.0000	531.0	27.06%	245.5	14.31%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-48	-1.107e+02	0.0000	821.0	41.85%	455.5	26.55%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-47	-1.091e+02	0.0000	782.0	39.86%	427.1	24.90%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-47	-1.087e+02	0.0000	980.0	49.95%	583.8	34.03%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-46	-1.081e+02	0.0000	825.0	42.05%	461.3	26.89%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-46	-1.066e+02	0.0000	1330.0	67.79%	888.8	51.81%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-46	-1.065e+02	0.0000	952.0	48.52%	563.3	32.84%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-45	-1.047e+02	0.0000	790.0	40.27%	438.9	25.59%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-45	-1.046e+02	0.0000	875.0	44.60%	504.2	29.39%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-45	-1.043e+02	0.0000	659.0	33.59%	341.3	19.90%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-45	-1.041e+02	0.0000	793.0	40.42%	441.0	25.71%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-45	-1.038e+02	0.0000	367.0	18.71%	146.3	8.53%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-44	-1.035e+02	0.0000	966.0	49.24%	578.5	33.72%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-44	-1.032e+02	0.0000	507.0	25.84%	236.7	13.80%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-44	-1.024e+02	0.0000	1013.0	51.63%	619.0	36.08%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-44	-1.020e+02	0.0000	1857.0	94.65%	1449.5	84.50%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-44	-1.014e+02	0.0000	441.0	22.48%	194.9	11.36%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-43	-1.009e+02	0.0000	625.0	31.86%	320.9	18.71%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-43	-1.002e+02	0.0000	1035.0	52.75%	639.8	37.30%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-43	-9.971e+01	0.0000	561.0	28.59%	276.2	16.10%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-43	-9.928e+01	0.0000	388.0	19.78%	162.3	9.46%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-42	-9.727e+01	0.0000	589.0	30.02%	298.2	17.38%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-42	-9.673e+01	0.0000	761.0	38.79%	425.8	24.82%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-41	-9.580e+01	0.0000	753.0	38.38%	421.0	24.54%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-41	-9.555e+01	0.0000	690.0	35.17%	373.1	21.75%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-41	-9.492e+01	0.0000	651.0	33.18%	345.3	20.13%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-41	-9.445e+01	0.0000	687.0	35.02%	372.3	21.70%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-40	-9.432e+01	0.0000	494.0	25.18%	235.7	13.74%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-39	-9.164e+01	0.0000	486.0	24.77%	232.4	13.55%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-39	-9.160e+01	0.0000	657.0	33.49%	353.9	20.63%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-38	-8.884e+01	0.0000	609.0	31.04%	321.7	18.75%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-38	-8.832e+01	0.0000	548.0	27.93%	278.8	16.25%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-37	-8.657e+01	0.0000	485.0	24.72%	236.4	13.78%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-37	-8.562e+01	0.0000	554.0	28.24%	285.4	16.64%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-37	-8.534e+01	0.0000	601.0	30.63%	319.9	18.65%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-36	-8.500e+01	0.0000	632.0	32.21%	342.5	19.96%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-35	-8.231e+01	0.0000	595.0	30.33%	318.2	18.55%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-35	-8.180e+01	0.0000	650.0	33.13%	359.5	20.96%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-35	-8.173e+01	0.0000	822.0	41.90%	491.0	28.62%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-35	-8.097e+01	0.0000	295.0	15.04%	118.6	6.91%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-35	-8.095e+01	0.0000	533.0	27.17%	275.2	16.04%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-34	-8.008e+01	0.0000	1948.0	99.29%	1612.0	93.97%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-34	-7.996e+01	0.0000	590.0	30.07%	317.4	18.51%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-34	-7.984e+01	0.0000	544.0	27.73%	284.1	16.56%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-34	-7.861e+01	0.0000	1958.0	99.80%	1635.9	95.36%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-34	-7.832e+01	0.0000	522.0	26.61%	270.7	15.78%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-33	-7.772e+01	0.0000	686.0	34.96%	391.5	22.82%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-33	-7.765e+01	0.0000	755.0	38.48%	444.8	25.93%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-33	-7.765e+01	0.0000	670.0	34.15%	379.9	22.15%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-32	-7.544e+01	0.0000	512.0	26.10%	266.3	15.52%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-32	-7.514e+01	0.0000	389.0	19.83%	182.7	10.65%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-32	-7.449e+01	0.0000	674.0	34.35%	386.7	22.54%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-32	-7.401e+01	0.0000	640.0	32.62%	361.3	21.06%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-32	-7.398e+01	0.0000	324.0	16.51%	141.9	8.27%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-32	-7.391e+01	0.0000	451.0	22.99%	225.9	13.17%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-31	-7.204e+01	0.0000	622.0	31.70%	350.1	20.41%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-31	-7.202e+01	0.0000	634.0	32.31%	359.1	20.94%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-31	-7.170e+01	0.0000	420.0	21.41%	206.5	12.04%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-31	-7.144e+01	0.0000	259.0	13.20%	103.1	6.01%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-30	-7.125e+01	0.0000	646.0	32.93%	369.1	21.52%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-30	-6.926e+01	0.0000	415.0	21.15%	205.7	11.99%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-29	-6.838e+01	0.0000	533.0	27.17%	289.2	16.86%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-29	-6.829e+01	0.0000	323.0	16.46%	145.7	8.49%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-29	-6.800e+01	0.0000	358.0	18.25%	168.3	9.81%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-29	-6.690e+01	0.0000	242.0	12.33%	96.8	5.64%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-28	-6.617e+01	0.0000	360.0	18.35%	172.0	10.03%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-28	-6.617e+01	0.0000	360.0	18.35%	172.0	10.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-28	-6.591e+01	0.0000	346.0	17.64%	162.4	9.47%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-28	-6.552e+01	0.0000	383.0	19.52%	187.3	10.92%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-28	-6.551e+01	0.0000	447.0	22.78%	231.8	13.51%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-27	-6.428e+01	0.0000	330.0	16.82%	153.1	8.92%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-27	-6.322e+01	0.0000	549.0	27.98%	307.2	17.91%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-27	-6.294e+01	0.0000	305.0	15.55%	138.6	8.08%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-27	-6.268e+01	0.0000	343.0	17.48%	163.9	9.55%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-26	-6.155e+01	0.0000	402.0	20.49%	204.9	11.94%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-26	-6.121e+01	0.0000	460.0	23.45%	245.5	14.31%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-26	-6.064e+01	0.0000	305.0	15.55%	140.2	8.17%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-26	-6.053e+01	0.0000	513.0	26.15%	284.7	16.60%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-26	-6.036e+01	0.0000	157.0	8.00%	52.1	3.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-25	-5.962e+01	0.0000	135.0	6.88%	41.5	2.42%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-25	-5.952e+01	0.0000	261.0	13.30%	113.8	6.63%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-24	-5.745e+01	0.0000	368.0	18.76%	185.3	10.80%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-24	-5.680e+01	0.0000	367.0	18.71%	185.6	10.82%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-24	-5.549e+01	0.0000	650.0	33.13%	394.3	22.98%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-22	-5.142e+01	0.0000	313.0	15.95%	154.0	8.98%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-21	-5.020e+01	0.0000	154.0	7.85%	56.8	3.31%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-21	-4.947e+01	0.0000	280.0	14.27%	135.0	7.87%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-21	-4.941e+01	0.0000	295.0	15.04%	144.9	8.45%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-21	-4.871e+01	0.0000	259.0	13.20%	121.9	7.11%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-21	-4.837e+01	0.0000	243.0	12.39%	111.0	6.47%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-20	-4.655e+01	0.0000	242.0	12.33%	112.5	6.56%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-20	-4.655e+01	0.0000	242.0	12.33%	112.5	6.56%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-19	-4.463e+01	0.0000	330.0	16.82%	173.5	10.11%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-18	-4.318e+01	0.0000	339.0	17.28%	181.1	10.56%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-18	-4.297e+01	0.0000	285.0	14.53%	144.6	8.43%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-18	-4.250e+01	0.0000	352.0	17.94%	191.9	11.19%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-18	-4.222e+01	0.0000	444.0	22.63%	258.1	15.05%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-18	-4.203e+01	0.0000	237.0	12.08%	113.2	6.60%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-18	-4.170e+01	0.0000	218.0	11.11%	101.6	5.92%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-17	-4.120e+01	0.0000	423.0	21.56%	244.9	14.28%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-17	-4.107e+01	0.0000	104.0	5.30%	34.5	2.01%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-17	-4.013e+01	0.0000	141.0	7.19%	55.6	3.24%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-16	-3.891e+01	0.0000	168.0	8.56%	72.9	4.25%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-16	-3.828e+01	0.0000	105.0	5.35%	36.3	2.12%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-15	-3.515e+01	0.0000	330.0	16.82%	185.5	10.82%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-14	-3.376e+01	0.0000	288.0	14.68%	157.3	9.17%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-14	-3.346e+01	0.0000	234.0	11.93%	121.0	7.05%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-13	-3.214e+01	0.0000	217.0	11.06%	110.3	6.43%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-13	-3.141e+01	0.0000	285.0	14.53%	158.1	9.22%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-13	-3.093e+01	0.0000	106.0	5.40%	41.7	2.43%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-12	-2.916e+01	0.0000	170.0	8.66%	82.8	4.83%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-12	-2.844e+01	0.0000	193.0	9.84%	98.1	5.72%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-12	-2.824e+01	0.0000	139.0	7.08%	63.7	3.71%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-12	-2.776e+01	0.0000	58.0	2.96%	17.6	1.02%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-11	-2.639e+01	0.0000	122.0	6.22%	54.2	3.16%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-11	-2.601e+01	0.0000	165.0	8.41%	82.9	4.83%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-11	-2.542e+01	0.0000	101.0	5.15%	42.7	2.49%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-10	-2.499e+01	0.0000	294.0	14.98%	174.7	10.18%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-10	-2.445e+01	0.0000	55.0	2.80%	17.6	1.03%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-9	-2.271e+01	0.0000	234.0	11.93%	134.7	7.85%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-9	-2.248e+01	0.0000	57.0	2.91%	19.0	1.11%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-9	-2.104e+01	0.0000	82.0	4.18%	34.4	2.00%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-8	-2.031e+01	0.0000	215.0	10.96%	124.7	7.27%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-8	-1.997e+01	0.0000	67.0	3.41%	26.2	1.52%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-7	-1.710e+01	0.0000	111.0	5.66%	56.9	3.32%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-7	-1.678e+01	0.0000	58.0	2.96%	23.4	1.36%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-7	-1.635e+01	0.0000	202.0	10.30%	121.5	7.08%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-6	-1.552e+01	0.0000	153.0	7.80%	87.7	5.11%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-5	-1.164e+01	0.0000	67.0	3.41%	33.5	1.95%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-4	-1.059e+01	0.0000	35.0	1.78%	14.8	0.86%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-8.152e+00	0.0003	46.0	2.34%	23.3	1.36%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-3	-8.002e+00	0.0003	25.0	1.27%	10.1	0.59%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-2	-6.688e+00	0.0013	20.0	1.02%	8.8	0.51%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.212e+00	0.0404	32.0	1.63%	20.3	1.18%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-2.752e+00	0.0638	13.0	0.66%	7.9	0.46%