Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1746)	% of Background Sequences with Motif
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-151	-3.477e+02	0.0000	1812.0	92.35%	1183.0	67.77%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-142	-3.279e+02	0.0000	1489.0	75.89%	833.6	47.75%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-137	-3.165e+02	0.0000	1817.0	92.61%	1215.2	69.62%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-136	-3.151e+02	0.0000	1596.0	81.35%	952.7	54.58%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-136	-3.149e+02	0.0000	1525.0	77.73%	879.2	50.37%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-134	-3.095e+02	0.0000	1602.0	81.65%	963.3	55.19%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-133	-3.066e+02	0.0000	1668.0	85.02%	1038.8	59.51%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-130	-3.016e+02	0.0000	1620.0	82.57%	990.0	56.71%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-130	-3.010e+02	0.0000	1789.0	91.18%	1190.9	68.22%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-130	-3.005e+02	0.0000	1025.0	52.24%	459.1	26.30%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-127	-2.926e+02	0.0000	1624.0	82.77%	1001.6	57.38%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-126	-2.909e+02	0.0000	1538.0	78.39%	912.9	52.30%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-125	-2.897e+02	0.0000	1720.0	87.67%	1113.8	63.80%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-125	-2.887e+02	0.0000	1778.0	90.62%	1186.1	67.95%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-125	-2.886e+02	0.0000	1487.0	75.79%	863.2	49.45%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-124	-2.872e+02	0.0000	1628.0	82.98%	1010.6	57.90%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-124	-2.860e+02	0.0000	1678.0	85.52%	1067.8	61.17%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-122	-2.832e+02	0.0000	1443.0	73.55%	825.9	47.32%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-121	-2.791e+02	0.0000	1341.0	68.35%	734.7	42.09%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-121	-2.789e+02	0.0000	1417.0	72.22%	804.1	46.06%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-120	-2.773e+02	0.0000	1651.0	84.15%	1044.0	59.81%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-120	-2.770e+02	0.0000	1822.0	92.86%	1255.9	71.95%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-120	-2.766e+02	0.0000	1600.0	81.55%	989.4	56.68%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-120	-2.765e+02	0.0000	1872.0	95.41%	1329.5	76.16%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-119	-2.757e+02	0.0000	1714.0	87.36%	1118.7	64.09%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-118	-2.719e+02	0.0000	1341.0	68.35%	740.4	42.42%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-116	-2.679e+02	0.0000	1866.0	95.11%	1327.4	76.04%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-115	-2.666e+02	0.0000	1832.0	93.37%	1278.6	73.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-115	-2.661e+02	0.0000	1765.0	89.96%	1189.5	68.14%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-115	-2.659e+02	0.0000	1744.0	88.89%	1164.0	66.68%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-114	-2.627e+02	0.0000	1555.0	79.26%	954.8	54.70%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-113	-2.613e+02	0.0000	1815.0	92.51%	1260.0	72.18%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-113	-2.607e+02	0.0000	1454.0	74.11%	855.6	49.02%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-113	-2.605e+02	0.0000	1414.0	72.07%	817.7	46.84%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-112	-2.597e+02	0.0000	1787.0	91.08%	1223.5	70.09%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-112	-2.594e+02	0.0000	1783.0	90.88%	1218.9	69.82%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-112	-2.583e+02	0.0000	1783.0	90.88%	1219.2	69.84%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-111	-2.576e+02	0.0000	1670.0	85.12%	1083.0	62.04%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-110	-2.554e+02	0.0000	1565.0	79.77%	971.6	55.66%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-110	-2.549e+02	0.0000	1776.0	90.52%	1213.8	69.54%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-110	-2.548e+02	0.0000	1620.0	82.57%	1030.8	59.05%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-110	-2.537e+02	0.0000	1757.0	89.55%	1190.9	68.22%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-109	-2.527e+02	0.0000	1802.0	91.85%	1249.2	71.56%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-109	-2.525e+02	0.0000	1464.0	74.62%	872.9	50.01%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-109	-2.523e+02	0.0000	1439.0	73.34%	848.7	48.62%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-109	-2.514e+02	0.0000	1307.0	66.62%	727.5	41.68%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-109	-2.513e+02	0.0000	1810.0	92.25%	1261.4	72.26%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-109	-2.513e+02	0.0000	1571.0	80.07%	981.3	56.21%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-108	-2.498e+02	0.0000	1376.0	70.13%	792.0	45.37%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-108	-2.495e+02	0.0000	1343.0	68.45%	761.2	43.61%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-108	-2.491e+02	0.0000	1843.0	93.93%	1309.1	75.00%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-107	-2.470e+02	0.0000	1852.0	94.39%	1324.6	75.88%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-106	-2.463e+02	0.0000	1642.0	83.69%	1062.8	60.88%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-106	-2.458e+02	0.0000	1725.0	87.92%	1158.0	66.34%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-106	-2.455e+02	0.0000	1624.0	82.77%	1043.3	59.77%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-106	-2.453e+02	0.0000	1794.0	91.44%	1245.3	71.34%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-106	-2.448e+02	0.0000	1356.0	69.11%	777.2	44.52%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-106	-2.442e+02	0.0000	1820.0	92.76%	1281.1	73.39%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-105	-2.422e+02	0.0000	1788.0	91.13%	1240.6	71.07%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-105	-2.420e+02	0.0000	1557.0	79.36%	975.2	55.86%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-104	-2.404e+02	0.0000	1914.0	97.55%	1430.9	81.97%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-104	-2.401e+02	0.0000	1932.0	98.47%	1465.1	83.93%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-104	-2.395e+02	0.0000	1757.0	89.55%	1203.4	68.94%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-103	-2.394e+02	0.0000	1589.0	80.99%	1011.4	57.94%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-103	-2.385e+02	0.0000	1749.0	89.14%	1194.7	68.44%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-103	-2.380e+02	0.0000	1892.0	96.43%	1395.0	79.91%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-103	-2.380e+02	0.0000	1644.0	83.79%	1072.9	61.46%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-103	-2.377e+02	0.0000	1815.0	92.51%	1280.5	73.35%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-103	-2.376e+02	0.0000	1911.0	97.40%	1427.7	81.79%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-103	-2.374e+02	0.0000	1457.0	74.26%	879.9	50.40%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-103	-2.373e+02	0.0000	1761.0	89.76%	1210.1	69.32%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-102	-2.369e+02	0.0000	1669.0	85.07%	1101.6	63.11%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-102	-2.366e+02	0.0000	1595.0	81.29%	1020.8	58.48%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-102	-2.361e+02	0.0000	1311.0	66.82%	744.6	42.65%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-102	-2.361e+02	0.0000	1844.0	93.99%	1322.6	75.77%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-102	-2.354e+02	0.0000	1797.0	91.59%	1258.8	72.11%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-102	-2.350e+02	0.0000	1822.0	92.86%	1292.0	74.02%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-101	-2.342e+02	0.0000	1547.0	78.85%	972.3	55.70%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-101	-2.338e+02	0.0000	1662.0	84.71%	1096.9	62.84%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-101	-2.334e+02	0.0000	1826.0	93.07%	1299.2	74.43%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-101	-2.332e+02	0.0000	1606.0	81.86%	1035.4	59.31%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-100	-2.325e+02	0.0000	1493.0	76.10%	919.5	52.67%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-100	-2.322e+02	0.0000	1673.0	85.27%	1110.8	63.63%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-100	-2.321e+02	0.0000	1862.0	94.90%	1352.5	77.48%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-100	-2.314e+02	0.0000	1829.0	93.22%	1305.6	74.79%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-100	-2.304e+02	0.0000	1497.0	76.30%	925.9	53.04%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-99	-2.296e+02	0.0000	1873.0	95.46%	1371.8	78.59%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-98	-2.263e+02	0.0000	1713.0	87.31%	1162.6	66.60%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-98	-2.258e+02	0.0000	1883.0	95.97%	1390.8	79.67%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-97	-2.251e+02	0.0000	1383.0	70.49%	820.7	47.02%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-97	-2.251e+02	0.0000	1384.0	70.54%	821.5	47.06%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-97	-2.249e+02	0.0000	1824.0	92.97%	1304.0	74.70%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-97	-2.247e+02	0.0000	1542.0	78.59%	977.0	55.97%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-97	-2.240e+02	0.0000	1445.0	73.65%	880.8	50.46%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-96	-2.216e+02	0.0000	1839.0	93.73%	1328.9	76.13%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-96	-2.212e+02	0.0000	1340.0	68.30%	784.1	44.92%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-95	-2.205e+02	0.0000	1890.0	96.33%	1406.6	80.58%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-95	-2.197e+02	0.0000	1274.0	64.93%	726.6	41.62%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-95	-2.195e+02	0.0000	1389.0	70.80%	831.5	47.63%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-95	-2.192e+02	0.0000	1530.0	77.98%	969.7	55.55%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-95	-2.190e+02	0.0000	1854.0	94.50%	1352.3	77.47%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-94	-2.168e+02	0.0000	1915.0	97.60%	1452.9	83.23%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-93	-2.159e+02	0.0000	1595.0	81.29%	1040.7	59.62%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-93	-2.158e+02	0.0000	1202.0	61.26%	667.1	38.22%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-93	-2.156e+02	0.0000	1639.0	83.54%	1088.1	62.34%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-93	-2.149e+02	0.0000	1379.0	70.29%	826.3	47.33%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-93	-2.149e+02	0.0000	1812.0	92.35%	1297.4	74.32%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-93	-2.149e+02	0.0000	1510.0	76.96%	953.0	54.60%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-93	-2.147e+02	0.0000	1383.0	70.49%	830.0	47.55%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-93	-2.146e+02	0.0000	1343.0	68.45%	793.3	45.44%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-93	-2.142e+02	0.0000	1804.0	91.95%	1287.7	73.77%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-92	-2.141e+02	0.0000	1730.0	88.18%	1194.6	68.43%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-92	-2.137e+02	0.0000	1786.0	91.03%	1264.4	72.44%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-92	-2.136e+02	0.0000	1940.0	98.88%	1504.9	86.21%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-92	-2.134e+02	0.0000	1455.0	74.16%	900.3	51.57%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-92	-2.134e+02	0.0000	1568.0	79.92%	1014.2	58.10%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-92	-2.130e+02	0.0000	1597.0	81.40%	1045.1	59.87%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-92	-2.122e+02	0.0000	1881.0	95.87%	1399.9	80.19%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-91	-2.112e+02	0.0000	1704.0	86.85%	1166.4	66.82%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-91	-2.112e+02	0.0000	1218.0	62.08%	685.9	39.29%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-91	-2.111e+02	0.0000	1561.0	79.56%	1010.0	57.86%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-91	-2.107e+02	0.0000	1707.0	87.00%	1170.7	67.07%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-91	-2.103e+02	0.0000	1567.0	79.87%	1016.1	58.21%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-91	-2.103e+02	0.0000	1458.0	74.31%	906.1	51.91%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-91	-2.099e+02	0.0000	1886.0	96.13%	1409.9	80.77%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-91	-2.098e+02	0.0000	1879.0	95.77%	1398.3	80.10%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-91	-2.097e+02	0.0000	1922.0	97.96%	1471.7	84.31%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-90	-2.094e+02	0.0000	1917.0	97.71%	1462.0	83.75%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-90	-2.092e+02	0.0000	1311.0	66.82%	769.6	44.09%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-90	-2.089e+02	0.0000	1480.0	75.43%	929.7	53.26%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-90	-2.083e+02	0.0000	1759.0	89.65%	1235.1	70.75%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-90	-2.082e+02	0.0000	1750.0	89.19%	1224.3	70.13%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-90	-2.082e+02	0.0000	1311.0	66.82%	770.0	44.11%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-89	-2.072e+02	0.0000	1050.0	53.52%	549.2	31.46%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-89	-2.070e+02	0.0000	1335.0	68.04%	793.3	45.44%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-89	-2.069e+02	0.0000	1435.0	73.14%	887.6	50.85%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-89	-2.062e+02	0.0000	1922.0	97.96%	1474.1	84.45%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-89	-2.058e+02	0.0000	1500.0	76.45%	952.7	54.58%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-89	-2.054e+02	0.0000	1891.0	96.38%	1421.2	81.42%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-88	-2.047e+02	0.0000	1807.0	92.10%	1300.2	74.48%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-88	-2.043e+02	0.0000	1455.0	74.16%	909.9	52.12%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-88	-2.039e+02	0.0000	1479.0	75.38%	933.8	53.49%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-88	-2.032e+02	0.0000	1463.0	74.57%	918.1	52.60%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-88	-2.032e+02	0.0000	977.0	49.80%	495.5	28.39%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-88	-2.031e+02	0.0000	1465.0	74.67%	920.4	52.73%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-88	-2.030e+02	0.0000	1391.0	70.90%	849.7	48.68%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-87	-2.026e+02	0.0000	1305.0	66.51%	770.9	44.16%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-87	-2.018e+02	0.0000	1675.0	85.37%	1143.0	65.48%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-87	-2.011e+02	0.0000	1469.0	74.87%	926.6	53.08%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-86	-1.991e+02	0.0000	1474.0	75.13%	933.9	53.50%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-86	-1.981e+02	0.0000	1345.0	68.55%	811.6	46.50%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-85	-1.979e+02	0.0000	1702.0	86.75%	1177.9	67.48%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-85	-1.976e+02	0.0000	1906.0	97.15%	1453.6	83.27%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-85	-1.975e+02	0.0000	1637.0	83.44%	1104.2	63.26%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-85	-1.972e+02	0.0000	1858.0	94.70%	1378.4	78.96%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-85	-1.968e+02	0.0000	1362.0	69.42%	828.4	47.46%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-85	-1.966e+02	0.0000	1570.0	80.02%	1033.5	59.21%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-84	-1.953e+02	0.0000	1943.0	99.03%	1526.4	87.44%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-84	-1.946e+02	0.0000	855.0	43.58%	410.5	23.52%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-84	-1.942e+02	0.0000	1906.0	97.15%	1456.6	83.44%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-84	-1.939e+02	0.0000	1206.0	61.47%	691.4	39.61%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-84	-1.938e+02	0.0000	1255.0	63.97%	734.2	42.06%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-83	-1.931e+02	0.0000	1652.0	84.20%	1126.0	64.50%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-83	-1.920e+02	0.0000	1079.0	54.99%	586.2	33.58%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-83	-1.919e+02	0.0000	1191.0	60.70%	680.5	38.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-83	-1.915e+02	0.0000	1898.0	96.74%	1445.6	82.81%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-83	-1.914e+02	0.0000	1317.0	67.13%	792.8	45.42%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-82	-1.910e+02	0.0000	1413.0	72.02%	882.8	50.57%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-82	-1.904e+02	0.0000	1055.0	53.77%	568.1	32.54%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-82	-1.902e+02	0.0000	1278.0	65.14%	758.6	43.46%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-82	-1.894e+02	0.0000	1153.0	58.77%	650.2	37.25%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-82	-1.892e+02	0.0000	1077.0	54.89%	587.2	33.64%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-82	-1.891e+02	0.0000	1440.0	73.39%	910.5	52.16%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-81	-1.882e+02	0.0000	1898.0	96.74%	1448.2	82.96%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-81	-1.873e+02	0.0000	1278.0	65.14%	761.6	43.63%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-80	-1.863e+02	0.0000	1242.0	63.30%	730.6	41.85%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-79	-1.838e+02	0.0000	1118.0	56.98%	626.3	35.88%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-79	-1.837e+02	0.0000	1611.0	82.11%	1090.1	62.45%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-79	-1.834e+02	0.0000	895.0	45.62%	449.5	25.75%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-79	-1.820e+02	0.0000	860.0	43.83%	424.9	24.34%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-78	-1.816e+02	0.0000	1223.0	62.33%	718.3	41.15%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-78	-1.811e+02	0.0000	920.0	46.89%	470.1	26.93%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-78	-1.806e+02	0.0000	1391.0	70.90%	872.1	49.96%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-78	-1.802e+02	0.0000	982.0	50.05%	519.2	29.74%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-78	-1.797e+02	0.0000	1276.0	65.04%	767.8	43.99%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-77	-1.790e+02	0.0000	886.0	45.16%	446.5	25.58%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-77	-1.788e+02	0.0000	1028.0	52.40%	557.7	31.95%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-77	-1.781e+02	0.0000	1058.0	53.92%	582.1	33.34%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-76	-1.769e+02	0.0000	834.0	42.51%	410.0	23.48%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-76	-1.764e+02	0.0000	1270.0	64.73%	765.9	43.88%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-76	-1.757e+02	0.0000	1277.0	65.09%	772.6	44.26%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-76	-1.754e+02	0.0000	1464.0	74.62%	948.4	54.33%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-76	-1.751e+02	0.0000	1182.0	60.24%	689.4	39.50%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-75	-1.739e+02	0.0000	836.0	42.61%	413.9	23.71%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-75	-1.727e+02	0.0000	1461.0	74.46%	948.3	54.33%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-74	-1.720e+02	0.0000	1206.0	61.47%	713.3	40.86%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-74	-1.718e+02	0.0000	1741.0	88.74%	1250.1	71.61%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-74	-1.715e+02	0.0000	1066.0	54.33%	595.4	34.11%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-73	-1.702e+02	0.0000	1276.0	65.04%	777.1	44.52%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-73	-1.701e+02	0.0000	1009.0	51.43%	550.8	31.55%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-73	-1.701e+02	0.0000	1155.0	58.87%	671.4	38.46%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-73	-1.698e+02	0.0000	952.0	48.52%	506.0	28.99%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-73	-1.696e+02	0.0000	1801.0	91.79%	1327.5	76.05%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-73	-1.695e+02	0.0000	1071.0	54.59%	601.6	34.46%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-73	-1.693e+02	0.0000	1394.0	71.05%	888.0	50.87%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-73	-1.689e+02	0.0000	1075.0	54.79%	605.8	34.70%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-73	-1.686e+02	0.0000	1236.0	63.00%	743.0	42.57%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-72	-1.676e+02	0.0000	1651.0	84.15%	1151.4	65.96%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-72	-1.671e+02	0.0000	1232.0	62.79%	741.1	42.46%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-72	-1.668e+02	0.0000	852.0	43.43%	431.6	24.73%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-72	-1.667e+02	0.0000	1254.0	63.91%	761.8	43.64%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-72	-1.663e+02	0.0000	1935.0	98.62%	1534.6	87.91%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-71	-1.646e+02	0.0000	1398.0	71.25%	896.6	51.36%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-70	-1.620e+02	0.0000	1105.0	56.32%	638.0	36.55%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-70	-1.618e+02	0.0000	1875.0	95.57%	1437.1	82.33%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-70	-1.614e+02	0.0000	1177.0	59.99%	699.5	40.07%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-69	-1.610e+02	0.0000	1099.0	56.01%	634.0	36.32%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-69	-1.603e+02	0.0000	1952.0	99.49%	1577.4	90.37%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-69	-1.596e+02	0.0000	1934.0	98.57%	1538.2	88.12%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-69	-1.589e+02	0.0000	1368.0	69.72%	874.2	50.08%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-68	-1.574e+02	0.0000	1085.0	55.30%	625.1	35.81%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-68	-1.571e+02	0.0000	1139.0	58.05%	671.3	38.46%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-68	-1.570e+02	0.0000	1570.0	80.02%	1076.2	61.65%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-68	-1.568e+02	0.0000	1148.0	58.51%	679.6	38.93%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-67	-1.561e+02	0.0000	591.0	30.12%	255.9	14.66%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-67	-1.550e+02	0.0000	1036.0	52.80%	587.1	33.63%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-66	-1.542e+02	0.0000	1008.0	51.38%	565.0	32.37%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-66	-1.536e+02	0.0000	1592.0	81.14%	1103.9	63.24%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-66	-1.529e+02	0.0000	1961.0	99.95%	1610.1	92.24%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-65	-1.519e+02	0.0000	1037.0	52.85%	591.4	33.88%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-65	-1.516e+02	0.0000	1260.0	64.22%	783.6	44.89%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-65	-1.515e+02	0.0000	1360.0	69.32%	875.2	50.14%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-65	-1.515e+02	0.0000	1892.0	96.43%	1473.9	84.44%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-65	-1.505e+02	0.0000	1949.0	99.34%	1578.8	90.44%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-65	-1.498e+02	0.0000	1092.0	55.66%	639.2	36.62%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-64	-1.496e+02	0.0000	1857.0	94.65%	1423.1	81.52%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-63	-1.471e+02	0.0000	1131.0	57.65%	676.0	38.72%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-63	-1.465e+02	0.0000	1115.0	56.83%	662.9	37.97%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-63	-1.457e+02	0.0000	777.0	39.60%	394.8	22.62%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-62	-1.450e+02	0.0000	1210.0	61.67%	746.2	42.75%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-62	-1.438e+02	0.0000	1035.0	52.75%	598.4	34.28%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-62	-1.436e+02	0.0000	946.0	48.22%	526.5	30.16%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-61	-1.417e+02	0.0000	1031.0	52.55%	597.5	34.23%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-61	-1.416e+02	0.0000	1927.0	98.22%	1541.6	88.32%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-61	-1.414e+02	0.0000	1134.0	57.80%	684.7	39.22%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-61	-1.412e+02	0.0000	707.0	36.03%	347.8	19.93%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-61	-1.406e+02	0.0000	1418.0	72.27%	943.3	54.04%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-60	-1.398e+02	0.0000	1147.0	58.46%	698.0	39.98%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-60	-1.390e+02	0.0000	548.0	27.93%	239.9	13.74%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-60	-1.387e+02	0.0000	1241.0	63.25%	781.2	44.75%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-59	-1.378e+02	0.0000	539.0	27.47%	234.8	13.45%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-59	-1.369e+02	0.0000	912.0	46.48%	506.6	29.02%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-58	-1.337e+02	0.0000	969.0	49.39%	555.3	31.81%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-57	-1.332e+02	0.0000	931.0	47.45%	525.1	30.08%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-57	-1.328e+02	0.0000	969.0	49.39%	556.7	31.89%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-57	-1.313e+02	0.0000	821.0	41.85%	441.0	25.27%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-57	-1.313e+02	0.0000	650.0	33.13%	315.6	18.08%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-56	-1.301e+02	0.0000	933.0	47.55%	530.5	30.39%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-56	-1.298e+02	0.0000	624.0	31.80%	298.5	17.10%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-56	-1.298e+02	0.0000	742.0	37.82%	383.5	21.97%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-56	-1.297e+02	0.0000	758.0	38.63%	395.2	22.64%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-55	-1.279e+02	0.0000	590.0	30.07%	276.3	15.83%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-55	-1.278e+02	0.0000	798.0	40.67%	427.4	24.48%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-55	-1.267e+02	0.0000	902.0	45.97%	509.8	29.20%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-54	-1.265e+02	0.0000	1002.0	51.07%	590.1	33.81%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-54	-1.251e+02	0.0000	1218.0	62.08%	778.0	44.57%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-54	-1.250e+02	0.0000	882.0	44.95%	495.6	28.39%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-53	-1.243e+02	0.0000	1954.0	99.59%	1613.8	92.45%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-53	-1.239e+02	0.0000	1050.0	53.52%	633.4	36.28%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-53	-1.239e+02	0.0000	922.0	46.99%	528.0	30.25%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-53	-1.228e+02	0.0000	659.0	33.59%	329.6	18.88%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-53	-1.223e+02	0.0000	809.0	41.23%	441.3	25.28%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-52	-1.202e+02	0.0000	1249.0	63.66%	811.6	46.49%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-52	-1.199e+02	0.0000	761.0	38.79%	407.3	23.34%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-51	-1.191e+02	0.0000	875.0	44.60%	496.5	28.44%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-51	-1.189e+02	0.0000	749.0	38.18%	399.0	22.86%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-51	-1.183e+02	0.0000	793.0	40.42%	433.5	24.83%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-51	-1.179e+02	0.0000	886.0	45.16%	506.3	29.00%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-51	-1.177e+02	0.0000	822.0	41.90%	456.7	26.17%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-50	-1.171e+02	0.0000	825.0	42.05%	459.7	26.33%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-50	-1.166e+02	0.0000	507.0	25.84%	229.1	13.13%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-50	-1.165e+02	0.0000	1013.0	51.63%	611.9	35.05%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-50	-1.159e+02	0.0000	657.0	33.49%	334.9	19.19%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-50	-1.153e+02	0.0000	752.0	38.33%	405.6	23.23%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-49	-1.146e+02	0.0000	755.0	38.48%	408.4	23.40%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-49	-1.130e+02	0.0000	690.0	35.17%	361.1	20.69%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-48	-1.127e+02	0.0000	625.0	31.86%	314.0	17.99%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-48	-1.125e+02	0.0000	640.0	32.62%	325.8	18.67%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-48	-1.123e+02	0.0000	670.0	34.15%	347.2	19.89%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-48	-1.122e+02	0.0000	674.0	34.35%	350.9	20.10%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-48	-1.118e+02	0.0000	646.0	32.93%	330.6	18.94%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-47	-1.100e+02	0.0000	698.0	35.58%	370.9	21.25%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-47	-1.099e+02	0.0000	1072.0	54.64%	669.3	38.34%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-47	-1.097e+02	0.0000	980.0	49.95%	592.4	33.94%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-46	-1.081e+02	0.0000	1957.0	99.75%	1635.5	93.69%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-46	-1.066e+02	0.0000	753.0	38.38%	415.3	23.79%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-46	-1.061e+02	0.0000	531.0	27.06%	254.9	14.60%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-44	-1.026e+02	0.0000	632.0	32.21%	329.1	18.85%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-43	-9.995e+01	0.0000	295.0	15.04%	108.1	6.19%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-43	-9.983e+01	0.0000	1330.0	67.79%	913.1	52.31%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-43	-9.953e+01	0.0000	521.0	26.55%	253.8	14.54%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-43	-9.905e+01	0.0000	782.0	39.86%	446.7	25.59%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-42	-9.896e+01	0.0000	646.0	32.93%	343.3	19.67%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-42	-9.704e+01	0.0000	650.0	33.13%	348.9	19.99%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-41	-9.595e+01	0.0000	522.0	26.61%	257.9	14.77%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-41	-9.579e+01	0.0000	687.0	35.02%	377.5	21.63%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-41	-9.459e+01	0.0000	367.0	18.71%	155.8	8.92%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-40	-9.348e+01	0.0000	634.0	32.31%	340.1	19.48%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-40	-9.342e+01	0.0000	554.0	28.24%	282.6	16.19%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-39	-9.103e+01	0.0000	595.0	30.33%	314.5	18.02%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-39	-9.070e+01	0.0000	512.0	26.10%	255.8	14.65%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-39	-9.020e+01	0.0000	602.0	30.68%	320.4	18.35%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-39	-8.988e+01	0.0000	441.0	22.48%	207.7	11.90%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-38	-8.948e+01	0.0000	590.0	30.07%	312.3	17.89%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-38	-8.944e+01	0.0000	790.0	40.27%	464.3	26.60%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-38	-8.940e+01	0.0000	609.0	31.04%	326.9	18.73%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-38	-8.936e+01	0.0000	640.0	32.62%	349.0	19.99%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-38	-8.787e+01	0.0000	589.0	30.02%	313.2	17.94%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-37	-8.608e+01	0.0000	1958.0	99.80%	1657.9	94.97%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-37	-8.538e+01	0.0000	1185.0	60.40%	802.3	45.96%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-36	-8.446e+01	0.0000	544.0	27.73%	284.3	16.29%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-36	-8.435e+01	0.0000	651.0	33.18%	363.6	20.83%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-36	-8.365e+01	0.0000	827.0	42.15%	501.9	28.75%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-35	-8.260e+01	0.0000	485.0	24.72%	244.3	13.99%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-35	-8.239e+01	0.0000	1948.0	99.29%	1637.7	93.82%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-35	-8.197e+01	0.0000	451.0	22.99%	221.3	12.68%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-34	-8.039e+01	0.0000	560.0	28.54%	300.2	17.20%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-34	-8.018e+01	0.0000	323.0	16.46%	138.3	7.92%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-34	-7.982e+01	0.0000	313.0	15.95%	132.1	7.57%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-34	-7.885e+01	0.0000	601.0	30.63%	332.5	19.05%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-33	-7.810e+01	0.0000	460.0	23.45%	231.4	13.26%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-33	-7.599e+01	0.0000	415.0	21.15%	202.5	11.60%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-32	-7.591e+01	0.0000	549.0	27.98%	297.7	17.06%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-32	-7.575e+01	0.0000	561.0	28.59%	306.2	17.54%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-32	-7.571e+01	0.0000	388.0	19.78%	184.8	10.59%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-32	-7.548e+01	0.0000	486.0	24.77%	252.6	14.47%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-32	-7.548e+01	0.0000	295.0	15.04%	124.4	7.13%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-32	-7.452e+01	0.0000	622.0	31.70%	353.8	20.27%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-32	-7.427e+01	0.0000	494.0	25.18%	259.8	14.88%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-31	-7.195e+01	0.0000	330.0	16.82%	149.2	8.55%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-31	-7.193e+01	0.0000	402.0	20.49%	197.3	11.31%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-30	-7.062e+01	0.0000	339.0	17.28%	157.0	8.99%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-30	-7.051e+01	0.0000	966.0	49.24%	635.8	36.42%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-30	-7.004e+01	0.0000	686.0	34.96%	408.6	23.41%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-30	-6.999e+01	0.0000	389.0	19.83%	190.1	10.89%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-30	-6.956e+01	0.0000	513.0	26.15%	278.4	15.95%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-29	-6.843e+01	0.0000	533.0	27.17%	294.7	16.88%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-29	-6.759e+01	0.0000	218.0	11.11%	83.7	4.80%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-29	-6.747e+01	0.0000	423.0	21.56%	216.5	12.40%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-28	-6.615e+01	0.0000	330.0	16.82%	154.7	8.86%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-28	-6.502e+01	0.0000	242.0	12.33%	99.2	5.68%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-27	-6.351e+01	0.0000	368.0	18.76%	182.7	10.46%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-27	-6.283e+01	0.0000	383.0	19.52%	193.3	11.07%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-26	-6.209e+01	0.0000	294.0	14.98%	134.4	7.70%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-26	-6.183e+01	0.0000	367.0	18.71%	184.0	10.54%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-25	-5.816e+01	0.0000	533.0	27.17%	307.9	17.64%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-24	-5.545e+01	0.0000	285.0	14.53%	134.2	7.69%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-23	-5.451e+01	0.0000	447.0	22.78%	248.1	14.21%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-23	-5.354e+01	0.0000	154.0	7.85%	55.8	3.19%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-22	-5.164e+01	0.0000	324.0	16.51%	164.6	9.43%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-22	-5.083e+01	0.0000	330.0	16.82%	169.0	9.68%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-21	-4.917e+01	0.0000	261.0	13.30%	124.1	7.11%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-21	-4.877e+01	0.0000	305.0	15.55%	154.3	8.84%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-21	-4.877e+01	0.0000	305.0	15.55%	154.4	8.84%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-21	-4.870e+01	0.0000	242.0	12.33%	112.2	6.43%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-21	-4.870e+01	0.0000	242.0	12.33%	112.2	6.43%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-20	-4.822e+01	0.0000	360.0	18.35%	193.3	11.07%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-20	-4.822e+01	0.0000	360.0	18.35%	193.3	11.07%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-20	-4.770e+01	0.0000	420.0	21.41%	237.3	13.59%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-20	-4.765e+01	0.0000	352.0	17.94%	188.7	10.81%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-19	-4.572e+01	0.0000	259.0	13.20%	126.5	7.25%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-19	-4.534e+01	0.0000	288.0	14.68%	146.4	8.39%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-19	-4.436e+01	0.0000	285.0	14.53%	145.2	8.32%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-18	-4.302e+01	0.0000	358.0	18.25%	198.2	11.36%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-18	-4.258e+01	0.0000	215.0	10.96%	100.4	5.75%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-18	-4.257e+01	0.0000	444.0	22.63%	262.7	15.05%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-17	-4.086e+01	0.0000	259.0	13.20%	131.1	7.51%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-17	-4.084e+01	0.0000	343.0	17.48%	190.9	10.94%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-17	-4.081e+01	0.0000	135.0	6.88%	52.9	3.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-17	-4.020e+01	0.0000	346.0	17.64%	193.5	11.08%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-16	-3.904e+01	0.0000	234.0	11.93%	116.9	6.70%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-16	-3.869e+01	0.0000	217.0	11.06%	105.1	6.02%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-14	-3.453e+01	0.0000	157.0	8.00%	70.2	4.02%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-14	-3.378e+01	0.0000	280.0	14.27%	154.7	8.86%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-14	-3.332e+01	0.0000	104.0	5.30%	39.0	2.23%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-14	-3.269e+01	0.0000	234.0	11.93%	123.5	7.08%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-14	-3.265e+01	0.0000	170.0	8.66%	80.8	4.63%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-14	-3.233e+01	0.0000	168.0	8.56%	79.4	4.55%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-13	-3.209e+01	0.0000	243.0	12.39%	130.9	7.50%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-12	-2.827e+01	0.0000	105.0	5.35%	43.3	2.48%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-11	-2.579e+01	0.0000	237.0	12.08%	134.1	7.68%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-10	-2.414e+01	0.0000	58.0	2.96%	19.6	1.12%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-8	-2.052e+01	0.0000	82.0	4.18%	35.8	2.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-8	-1.970e+01	0.0000	139.0	7.08%	73.8	4.23%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-8	-1.959e+01	0.0000	106.0	5.40%	52.0	2.98%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-8	-1.934e+01	0.0000	101.0	5.15%	48.1	2.76%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-7	-1.839e+01	0.0000	141.0	7.19%	76.5	4.38%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-7	-1.820e+01	0.0000	202.0	10.30%	120.5	6.90%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-7	-1.654e+01	0.0000	153.0	7.80%	87.5	5.01%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-6	-1.589e+01	0.0000	122.0	6.22%	66.2	3.79%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-6	-1.467e+01	0.0000	58.0	2.96%	25.4	1.46%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.317e+01	0.0000	67.0	3.41%	32.6	1.87%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-5	-1.246e+01	0.0000	55.0	2.80%	25.0	1.43%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-5	-1.173e+01	0.0000	25.0	1.27%	8.5	0.49%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-5	-1.168e+01	0.0000	165.0	8.41%	104.4	5.98%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-5	-1.167e+01	0.0000	57.0	2.91%	27.4	1.57%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-9.853e+00	0.0001	32.0	1.63%	13.8	0.79%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-4	-9.588e+00	0.0001	35.0	1.78%	15.7	0.90%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-4	-9.501e+00	0.0001	46.0	2.34%	22.7	1.30%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-2	-6.392e+00	0.0017	193.0	9.84%	139.9	8.01%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-2	-6.391e+00	0.0017	111.0	5.66%	75.0	4.29%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.092e+00	0.0456	67.0	3.41%	48.5	2.78%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-2.093e+00	0.1236	13.0	0.66%	8.1	0.46%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.777e+00	0.1692	20.0	1.02%	14.7	0.84%