Information for 7-CCCGAGTGGCGA (Motif 13)

A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C G T A G T C A C T G A C T G A C T G
p-value:1e-121
log p-value:-2.803e+02
Information Content per bp:1.530
Number of Target Sequences with motif1811.0
Percentage of Target Sequences with motif92.30%
Number of Background Sequences with motif1237.9
Percentage of Background Sequences with motif70.91%
Average Position of motif in Targets3754.5 +/- 3922.4bp
Average Position of motif in Background2122.4 +/- 1950.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)4.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCCGAGTGGCGA
-TTRAGTGSYK-
 A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCCGAGTGGCGA
-CCGATTGGCT-
 A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCCGAGTGGCGA
CTTGAGTGGCT-
 A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCCGAGTGGCGA
CTYRAGTGSY--
 A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCCGAGTGGCGA------
-NAGANTGGCGGGGNGNA
 A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCGAGTGGCGA
BTBRAGTGSN--
 A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCCGAGTGGCGA-
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCCGAGTGGCGA
-TTGAGTGSTT-
 A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCCGAGTGGCGA
NTCAAGTGG---
 A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T

MYCN/MA0104.4/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCCGAGTGGCGA
GGCCACGTGGCC-
 A C G T A G T C A G T C A G T C A C T G C G T A A C T G A C G T A C T G A C T G A G T C A C T G C G T A
T A C G T C A G T A G C T G A C C T G A A G T C T C A G G A C T A C T G A T C G A G T C A T G C A C G T