Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1748)	% of Background Sequences with Motif
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-140	-3.228e+02	0.0000	1812.0	92.35%	1205.7	68.96%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-139	-3.215e+02	0.0000	1817.0	92.61%	1213.5	69.41%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-138	-3.183e+02	0.0000	1596.0	81.35%	951.2	54.41%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-135	-3.113e+02	0.0000	1778.0	90.62%	1169.7	66.90%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-128	-2.950e+02	0.0000	1457.0	74.26%	830.8	47.52%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-126	-2.923e+02	0.0000	1624.0	82.77%	1003.3	57.38%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-126	-2.912e+02	0.0000	1600.0	81.55%	978.7	55.97%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-125	-2.882e+02	0.0000	1542.0	78.59%	920.5	52.65%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-124	-2.864e+02	0.0000	1744.0	88.89%	1147.7	65.64%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-121	-2.797e+02	0.0000	1749.0	89.14%	1159.6	66.32%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-120	-2.782e+02	0.0000	1651.0	84.15%	1045.9	59.82%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-120	-2.766e+02	0.0000	1443.0	73.55%	832.3	47.60%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-119	-2.754e+02	0.0000	1025.0	52.24%	477.8	27.33%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-118	-2.726e+02	0.0000	1832.0	93.37%	1275.3	72.94%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-117	-2.715e+02	0.0000	1788.0	91.13%	1216.2	69.56%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-117	-2.710e+02	0.0000	1547.0	78.85%	940.5	53.79%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-117	-2.694e+02	0.0000	1489.0	75.89%	883.6	50.53%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-116	-2.683e+02	0.0000	1487.0	75.79%	882.3	50.46%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-115	-2.656e+02	0.0000	1620.0	82.57%	1022.1	58.46%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-115	-2.655e+02	0.0000	1384.0	70.54%	786.5	44.98%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-115	-2.653e+02	0.0000	1439.0	73.34%	838.4	47.95%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-115	-2.651e+02	0.0000	1602.0	81.65%	1004.0	57.42%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-115	-2.651e+02	0.0000	1872.0	95.41%	1341.3	76.72%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-115	-2.650e+02	0.0000	1565.0	79.77%	964.7	55.17%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-114	-2.639e+02	0.0000	1765.0	89.96%	1193.9	68.28%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-114	-2.638e+02	0.0000	1644.0	83.79%	1050.1	60.06%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-114	-2.627e+02	0.0000	1668.0	85.02%	1078.4	61.68%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-114	-2.626e+02	0.0000	1815.0	92.51%	1260.1	72.07%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-113	-2.617e+02	0.0000	1810.0	92.25%	1254.6	71.76%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-113	-2.611e+02	0.0000	1822.0	92.86%	1271.3	72.71%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-113	-2.606e+02	0.0000	1776.0	90.52%	1210.8	69.25%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-112	-2.601e+02	0.0000	1620.0	82.57%	1027.6	58.77%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-112	-2.581e+02	0.0000	1341.0	68.35%	753.8	43.11%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-111	-2.574e+02	0.0000	1538.0	78.39%	943.1	53.94%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-111	-2.571e+02	0.0000	1761.0	89.76%	1194.0	68.29%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-111	-2.570e+02	0.0000	1642.0	83.69%	1054.1	60.29%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-111	-2.568e+02	0.0000	1725.0	87.92%	1150.8	65.82%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-111	-2.561e+02	0.0000	1675.0	85.37%	1092.5	62.49%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-110	-2.554e+02	0.0000	1759.0	89.65%	1193.1	68.24%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-109	-2.518e+02	0.0000	1854.0	94.50%	1325.4	75.80%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-108	-2.506e+02	0.0000	1624.0	82.77%	1040.5	59.51%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-108	-2.506e+02	0.0000	1783.0	90.88%	1228.9	70.28%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-108	-2.497e+02	0.0000	1356.0	69.11%	774.0	44.27%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-108	-2.495e+02	0.0000	1652.0	84.20%	1072.4	61.34%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-108	-2.493e+02	0.0000	1307.0	66.62%	730.3	41.77%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-108	-2.493e+02	0.0000	1789.0	91.18%	1237.7	70.79%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-108	-2.492e+02	0.0000	1804.0	91.95%	1257.2	71.90%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-107	-2.485e+02	0.0000	1383.0	70.49%	800.5	45.78%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-107	-2.478e+02	0.0000	1812.0	92.35%	1269.2	72.59%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-107	-2.478e+02	0.0000	1455.0	74.16%	869.5	49.73%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-107	-2.475e+02	0.0000	1822.0	92.86%	1283.8	73.43%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-107	-2.473e+02	0.0000	1866.0	95.11%	1347.4	77.06%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-106	-2.461e+02	0.0000	1862.0	94.90%	1342.8	76.80%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-106	-2.454e+02	0.0000	1892.0	96.43%	1390.6	79.53%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-106	-2.446e+02	0.0000	1454.0	74.11%	871.2	49.83%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-105	-2.431e+02	0.0000	1414.0	72.07%	834.0	47.70%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-105	-2.421e+02	0.0000	1567.0	79.87%	987.5	56.48%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-105	-2.418e+02	0.0000	1783.0	90.88%	1236.0	70.69%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-104	-2.401e+02	0.0000	1458.0	74.31%	879.5	50.30%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-104	-2.398e+02	0.0000	1311.0	66.82%	742.8	42.48%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-104	-2.397e+02	0.0000	1525.0	77.73%	946.0	54.11%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-103	-2.392e+02	0.0000	1678.0	85.52%	1111.6	63.58%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-103	-2.385e+02	0.0000	1673.0	85.27%	1106.3	63.27%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-103	-2.384e+02	0.0000	1932.0	98.47%	1469.8	84.07%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-103	-2.380e+02	0.0000	1662.0	84.71%	1094.5	62.60%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-103	-2.379e+02	0.0000	1815.0	92.51%	1282.9	73.38%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-103	-2.374e+02	0.0000	1802.0	91.85%	1265.4	72.38%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-103	-2.374e+02	0.0000	1493.0	76.10%	916.5	52.42%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-102	-2.358e+02	0.0000	1568.0	79.92%	994.1	56.86%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-102	-2.357e+02	0.0000	1463.0	74.57%	888.1	50.79%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-102	-2.353e+02	0.0000	1595.0	81.29%	1023.3	58.53%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-101	-2.338e+02	0.0000	1637.0	83.44%	1070.7	61.24%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-100	-2.310e+02	0.0000	1417.0	72.22%	848.2	48.51%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-99	-2.298e+02	0.0000	1445.0	73.65%	876.3	50.12%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-99	-2.298e+02	0.0000	1720.0	87.67%	1169.9	66.91%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-99	-2.298e+02	0.0000	1628.0	82.98%	1064.9	60.90%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-99	-2.290e+02	0.0000	1479.0	75.38%	910.4	52.07%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-99	-2.286e+02	0.0000	1714.0	87.36%	1163.1	66.52%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-99	-2.283e+02	0.0000	1075.0	54.79%	552.1	31.58%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-98	-2.273e+02	0.0000	1713.0	87.31%	1163.3	66.53%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-98	-2.271e+02	0.0000	1561.0	79.56%	995.8	56.96%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-98	-2.271e+02	0.0000	1843.0	93.93%	1331.1	76.13%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-98	-2.271e+02	0.0000	1750.0	89.19%	1208.7	69.13%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-98	-2.261e+02	0.0000	1464.0	74.62%	898.1	51.37%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-98	-2.258e+02	0.0000	1787.0	91.08%	1256.1	71.84%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-97	-2.255e+02	0.0000	1786.0	91.03%	1255.9	71.83%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-97	-2.253e+02	0.0000	1702.0	86.75%	1152.8	65.94%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-97	-2.240e+02	0.0000	1883.0	95.97%	1394.7	79.77%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-97	-2.236e+02	0.0000	1879.0	95.77%	1388.5	79.41%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-96	-2.230e+02	0.0000	1839.0	93.73%	1329.7	76.05%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-96	-2.227e+02	0.0000	1794.0	91.44%	1268.3	72.54%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-96	-2.225e+02	0.0000	1341.0	68.35%	785.4	44.92%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-96	-2.225e+02	0.0000	1820.0	92.76%	1303.6	74.56%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-96	-2.218e+02	0.0000	1595.0	81.29%	1036.6	59.29%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-96	-2.216e+02	0.0000	1379.0	70.29%	821.5	46.98%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-96	-2.212e+02	0.0000	1898.0	96.74%	1421.6	81.31%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-95	-2.208e+02	0.0000	1362.0	69.42%	806.5	46.13%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-95	-2.199e+02	0.0000	1873.0	95.46%	1383.0	79.10%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-95	-2.195e+02	0.0000	1278.0	65.14%	731.2	41.82%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-95	-2.189e+02	0.0000	1597.0	81.40%	1041.6	59.58%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-95	-2.188e+02	0.0000	1844.0	93.99%	1340.8	76.69%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-94	-2.183e+02	0.0000	1730.0	88.18%	1192.9	68.23%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-94	-2.182e+02	0.0000	1670.0	85.12%	1122.9	64.22%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-94	-2.175e+02	0.0000	1394.0	71.05%	839.2	48.00%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-94	-2.173e+02	0.0000	1571.0	80.07%	1015.0	58.05%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-93	-2.156e+02	0.0000	1474.0	75.13%	918.4	52.53%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-93	-2.156e+02	0.0000	1480.0	75.43%	924.9	52.90%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-93	-2.150e+02	0.0000	1915.0	97.60%	1456.4	83.30%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-92	-2.138e+02	0.0000	1922.0	97.96%	1470.1	84.08%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-92	-2.135e+02	0.0000	1510.0	76.96%	956.7	54.72%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-92	-2.134e+02	0.0000	1824.0	92.97%	1317.2	75.34%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-92	-2.133e+02	0.0000	1927.0	98.22%	1480.4	84.67%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-92	-2.132e+02	0.0000	1398.0	71.25%	847.9	48.49%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-92	-2.131e+02	0.0000	1757.0	89.55%	1230.3	70.37%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-92	-2.128e+02	0.0000	1707.0	87.00%	1170.6	66.95%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-92	-2.127e+02	0.0000	1469.0	74.87%	916.4	52.41%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-92	-2.126e+02	0.0000	1891.0	96.38%	1417.6	81.08%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-92	-2.125e+02	0.0000	1911.0	97.40%	1451.8	83.04%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-92	-2.122e+02	0.0000	1570.0	80.02%	1019.4	58.30%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-91	-2.112e+02	0.0000	1570.0	80.02%	1020.9	58.39%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-91	-2.110e+02	0.0000	1368.0	69.72%	821.9	47.01%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-91	-2.109e+02	0.0000	1147.0	58.46%	626.2	35.82%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-91	-2.108e+02	0.0000	1461.0	74.46%	910.2	52.06%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-91	-2.106e+02	0.0000	1914.0	97.55%	1458.3	83.40%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-91	-2.104e+02	0.0000	1741.0	88.74%	1213.5	69.40%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-91	-2.100e+02	0.0000	1917.0	97.71%	1464.7	83.77%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-91	-2.098e+02	0.0000	1611.0	82.11%	1066.0	60.97%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-90	-2.093e+02	0.0000	1589.0	80.99%	1042.4	59.62%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-90	-2.092e+02	0.0000	1218.0	62.08%	688.7	39.39%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-90	-2.087e+02	0.0000	1343.0	68.45%	800.3	45.77%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-90	-2.087e+02	0.0000	1079.0	54.99%	572.7	32.76%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-90	-2.086e+02	0.0000	1557.0	79.36%	1009.4	57.73%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-90	-2.083e+02	0.0000	1274.0	64.93%	739.0	42.26%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-90	-2.081e+02	0.0000	834.0	42.51%	385.1	22.03%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-90	-2.079e+02	0.0000	1669.0	85.07%	1131.0	64.69%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-90	-2.078e+02	0.0000	977.0	49.80%	492.9	28.19%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-90	-2.077e+02	0.0000	1464.0	74.62%	916.3	52.41%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-90	-2.075e+02	0.0000	1592.0	81.14%	1047.8	59.93%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-90	-2.075e+02	0.0000	1606.0	81.86%	1062.9	60.79%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-90	-2.074e+02	0.0000	1639.0	83.54%	1098.7	62.84%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-89	-2.069e+02	0.0000	1066.0	54.33%	563.2	32.21%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-89	-2.060e+02	0.0000	1906.0	97.15%	1448.3	82.83%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-89	-2.057e+02	0.0000	1465.0	74.67%	919.2	52.57%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-88	-2.049e+02	0.0000	1906.0	97.15%	1449.7	82.91%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-88	-2.044e+02	0.0000	1391.0	70.90%	849.7	48.60%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-88	-2.043e+02	0.0000	1376.0	70.13%	835.9	47.81%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-88	-2.037e+02	0.0000	1886.0	96.13%	1418.0	81.10%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-88	-2.035e+02	0.0000	1500.0	76.45%	956.0	54.68%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-88	-2.033e+02	0.0000	1335.0	68.04%	798.6	45.68%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-87	-2.023e+02	0.0000	1077.0	54.89%	576.0	32.95%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-87	-2.007e+02	0.0000	1555.0	79.26%	1015.7	58.09%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-87	-2.005e+02	0.0000	1345.0	68.55%	810.2	46.34%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-87	-2.003e+02	0.0000	1440.0	73.39%	900.7	51.51%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-86	-2.001e+02	0.0000	1153.0	58.77%	642.0	36.72%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-86	-1.988e+02	0.0000	1922.0	97.96%	1483.5	84.85%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-86	-1.983e+02	0.0000	1206.0	61.47%	688.1	39.36%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-85	-1.965e+02	0.0000	1940.0	98.88%	1521.9	87.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-84	-1.949e+02	0.0000	1340.0	68.30%	811.2	46.39%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-84	-1.937e+02	0.0000	1241.0	63.25%	723.5	41.38%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-83	-1.925e+02	0.0000	1278.0	65.14%	757.7	43.33%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-83	-1.923e+02	0.0000	1311.0	66.82%	787.6	45.05%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-83	-1.918e+02	0.0000	1881.0	95.87%	1420.8	81.26%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-83	-1.915e+02	0.0000	1852.0	94.39%	1377.4	78.78%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-83	-1.913e+02	0.0000	1311.0	66.82%	789.0	45.12%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-82	-1.905e+02	0.0000	1218.0	62.08%	706.5	40.41%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-82	-1.901e+02	0.0000	1651.0	84.15%	1129.3	64.59%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-82	-1.899e+02	0.0000	1890.0	96.33%	1436.8	82.18%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-82	-1.899e+02	0.0000	1898.0	96.74%	1449.9	82.93%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-82	-1.898e+02	0.0000	1317.0	67.13%	795.4	45.49%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-82	-1.889e+02	0.0000	1305.0	66.51%	785.2	44.91%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-81	-1.888e+02	0.0000	1343.0	68.45%	820.1	46.91%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-81	-1.887e+02	0.0000	1249.0	63.66%	735.1	42.04%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-81	-1.880e+02	0.0000	1177.0	59.99%	673.4	38.51%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-81	-1.879e+02	0.0000	1757.0	89.55%	1255.3	71.80%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-81	-1.877e+02	0.0000	1391.0	70.90%	866.8	49.57%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-81	-1.874e+02	0.0000	1797.0	91.59%	1306.3	74.71%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-81	-1.872e+02	0.0000	1071.0	54.59%	585.5	33.48%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-80	-1.857e+02	0.0000	1232.0	62.79%	723.2	41.36%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-80	-1.855e+02	0.0000	1202.0	61.26%	697.3	39.88%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-80	-1.846e+02	0.0000	1530.0	77.98%	1006.4	57.56%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-79	-1.842e+02	0.0000	1497.0	76.30%	973.2	55.66%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-79	-1.838e+02	0.0000	1276.0	65.04%	764.3	43.71%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-79	-1.831e+02	0.0000	1255.0	63.97%	746.4	42.69%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-79	-1.829e+02	0.0000	1826.0	93.07%	1349.3	77.17%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-79	-1.828e+02	0.0000	1050.0	53.52%	572.9	32.77%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-79	-1.828e+02	0.0000	1009.0	51.43%	539.3	30.84%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-78	-1.817e+02	0.0000	1704.0	86.85%	1198.4	68.54%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-78	-1.813e+02	0.0000	1435.0	73.14%	915.4	52.36%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-78	-1.800e+02	0.0000	1829.0	93.22%	1356.3	77.57%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-78	-1.797e+02	0.0000	1801.0	91.79%	1319.0	75.44%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-77	-1.789e+02	0.0000	1455.0	74.16%	937.1	53.59%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-77	-1.784e+02	0.0000	1943.0	99.03%	1543.7	88.29%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-77	-1.781e+02	0.0000	1360.0	69.32%	847.4	48.47%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-77	-1.773e+02	0.0000	1035.0	52.75%	565.4	32.34%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-76	-1.773e+02	0.0000	1934.0	98.57%	1525.6	87.26%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-76	-1.770e+02	0.0000	1191.0	60.70%	696.8	39.85%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-75	-1.745e+02	0.0000	1961.0	99.95%	1595.9	91.27%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-75	-1.736e+02	0.0000	1807.0	92.10%	1333.9	76.29%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-75	-1.728e+02	0.0000	895.0	45.62%	459.5	26.28%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-74	-1.719e+02	0.0000	952.0	48.52%	504.7	28.86%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-74	-1.715e+02	0.0000	982.0	50.05%	528.5	30.22%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-74	-1.705e+02	0.0000	1276.0	65.04%	778.4	44.52%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-73	-1.699e+02	0.0000	1099.0	56.01%	625.5	35.78%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-72	-1.679e+02	0.0000	946.0	48.22%	503.8	28.81%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-72	-1.670e+02	0.0000	1857.0	94.65%	1408.8	80.58%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-72	-1.670e+02	0.0000	1236.0	63.00%	747.0	42.72%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-72	-1.664e+02	0.0000	1270.0	64.73%	777.1	44.45%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-72	-1.661e+02	0.0000	1008.0	51.38%	554.2	31.70%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-71	-1.656e+02	0.0000	1206.0	61.47%	721.3	41.25%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-71	-1.653e+02	0.0000	1875.0	95.57%	1436.3	82.15%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-71	-1.652e+02	0.0000	1085.0	55.30%	618.7	35.39%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-71	-1.650e+02	0.0000	922.0	46.99%	487.5	27.88%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-71	-1.649e+02	0.0000	1118.0	56.98%	646.6	36.98%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-71	-1.647e+02	0.0000	1031.0	52.55%	574.1	32.83%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-71	-1.646e+02	0.0000	855.0	43.58%	436.3	24.95%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-71	-1.644e+02	0.0000	1858.0	94.70%	1412.2	80.77%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-71	-1.639e+02	0.0000	1277.0	65.09%	786.3	44.97%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-70	-1.617e+02	0.0000	761.0	38.79%	369.7	21.15%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-69	-1.601e+02	0.0000	1389.0	70.80%	894.4	51.16%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-69	-1.599e+02	0.0000	1952.0	99.49%	1580.3	90.38%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-69	-1.597e+02	0.0000	969.0	49.39%	529.9	30.31%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-69	-1.590e+02	0.0000	1058.0	53.92%	602.7	34.47%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-68	-1.583e+02	0.0000	1092.0	55.66%	631.3	36.10%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-68	-1.582e+02	0.0000	1892.0	96.43%	1469.9	84.07%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-68	-1.576e+02	0.0000	886.0	45.16%	466.6	26.69%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-67	-1.560e+02	0.0000	1383.0	70.49%	893.7	51.11%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-67	-1.546e+02	0.0000	1131.0	57.65%	668.0	38.21%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-66	-1.536e+02	0.0000	1935.0	98.62%	1548.7	88.58%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-66	-1.523e+02	0.0000	1148.0	58.51%	685.5	39.21%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-65	-1.518e+02	0.0000	821.0	41.85%	422.1	24.14%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-65	-1.508e+02	0.0000	1105.0	56.32%	650.6	37.21%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-65	-1.498e+02	0.0000	777.0	39.60%	391.3	22.38%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-65	-1.497e+02	0.0000	969.0	49.39%	539.1	30.84%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-64	-1.489e+02	0.0000	624.0	31.80%	283.9	16.24%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-64	-1.485e+02	0.0000	591.0	30.12%	261.4	14.95%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-64	-1.480e+02	0.0000	1413.0	72.02%	932.0	53.30%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-64	-1.479e+02	0.0000	1949.0	99.34%	1583.7	90.58%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-63	-1.470e+02	0.0000	1418.0	72.27%	937.3	53.61%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-63	-1.468e+02	0.0000	522.0	26.61%	217.8	12.46%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-63	-1.468e+02	0.0000	1330.0	67.79%	854.4	48.87%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-63	-1.466e+02	0.0000	1242.0	63.30%	774.5	44.30%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-63	-1.453e+02	0.0000	1139.0	58.05%	685.5	39.21%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-63	-1.453e+02	0.0000	659.0	33.59%	310.8	17.77%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-62	-1.450e+02	0.0000	1260.0	64.22%	792.4	45.32%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-62	-1.442e+02	0.0000	809.0	41.23%	420.5	24.05%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-62	-1.441e+02	0.0000	860.0	43.83%	459.7	26.29%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-62	-1.439e+02	0.0000	1182.0	60.24%	724.3	41.43%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-62	-1.437e+02	0.0000	1954.0	99.59%	1599.9	91.51%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-62	-1.437e+02	0.0000	836.0	42.61%	441.9	25.27%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-61	-1.414e+02	0.0000	1223.0	62.33%	763.2	43.65%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-61	-1.407e+02	0.0000	632.0	32.21%	295.1	16.88%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-60	-1.404e+02	0.0000	1254.0	63.91%	792.1	45.31%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-60	-1.396e+02	0.0000	707.0	36.03%	349.5	19.99%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-60	-1.387e+02	0.0000	912.0	46.48%	505.5	28.91%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-60	-1.387e+02	0.0000	1115.0	56.83%	672.0	38.44%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-60	-1.382e+02	0.0000	1036.0	52.80%	606.2	34.67%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-59	-1.380e+02	0.0000	1055.0	53.77%	622.4	35.60%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-59	-1.376e+02	0.0000	798.0	40.67%	418.7	23.95%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-59	-1.367e+02	0.0000	875.0	44.60%	478.9	27.39%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-59	-1.365e+02	0.0000	1155.0	58.87%	709.4	40.58%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-59	-1.359e+02	0.0000	931.0	47.45%	523.2	29.93%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-58	-1.349e+02	0.0000	852.0	43.43%	463.0	26.48%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-58	-1.336e+02	0.0000	1037.0	52.85%	612.5	35.03%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-57	-1.326e+02	0.0000	827.0	42.15%	445.2	25.46%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-57	-1.324e+02	0.0000	920.0	46.89%	519.0	29.68%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-57	-1.317e+02	0.0000	1210.0	61.67%	763.7	43.68%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-56	-1.312e+02	0.0000	698.0	35.58%	350.2	20.03%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-55	-1.286e+02	0.0000	749.0	38.18%	390.1	22.31%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-54	-1.256e+02	0.0000	980.0	49.95%	574.0	32.83%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-54	-1.253e+02	0.0000	602.0	30.68%	288.0	16.47%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-54	-1.248e+02	0.0000	1050.0	53.52%	634.0	36.26%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-54	-1.246e+02	0.0000	933.0	47.55%	537.8	30.76%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-53	-1.224e+02	0.0000	1013.0	51.63%	605.0	34.60%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-52	-1.220e+02	0.0000	646.0	32.93%	322.0	18.41%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-52	-1.213e+02	0.0000	1134.0	57.80%	709.3	40.57%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-52	-1.211e+02	0.0000	902.0	45.97%	516.9	29.57%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-52	-1.211e+02	0.0000	1028.0	52.40%	619.1	35.41%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-52	-1.201e+02	0.0000	755.0	38.48%	403.7	23.09%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-52	-1.200e+02	0.0000	966.0	49.24%	569.0	32.54%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-51	-1.196e+02	0.0000	886.0	45.16%	505.1	28.89%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-51	-1.184e+02	0.0000	758.0	38.63%	407.7	23.32%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-50	-1.173e+02	0.0000	742.0	37.82%	396.8	22.70%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-50	-1.171e+02	0.0000	793.0	40.42%	435.0	24.88%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-50	-1.167e+02	0.0000	782.0	39.86%	427.9	24.47%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-50	-1.154e+02	0.0000	650.0	33.13%	330.8	18.92%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-49	-1.151e+02	0.0000	825.0	42.05%	462.4	26.45%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-49	-1.148e+02	0.0000	1957.0	99.75%	1632.4	93.36%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-49	-1.148e+02	0.0000	1002.0	51.07%	605.0	34.60%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-49	-1.132e+02	0.0000	601.0	30.63%	297.6	17.02%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-48	-1.124e+02	0.0000	882.0	44.95%	510.2	29.18%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-47	-1.103e+02	0.0000	752.0	38.33%	411.3	23.52%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-47	-1.101e+02	0.0000	531.0	27.06%	251.9	14.41%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-47	-1.095e+02	0.0000	539.0	27.47%	257.8	14.74%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-47	-1.090e+02	0.0000	560.0	28.54%	272.4	15.58%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-47	-1.083e+02	0.0000	589.0	30.02%	293.3	16.78%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-45	-1.053e+02	0.0000	646.0	32.93%	337.4	19.30%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-45	-1.042e+02	0.0000	822.0	41.90%	472.7	27.03%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-45	-1.038e+02	0.0000	549.0	27.98%	269.1	15.39%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-44	-1.014e+02	0.0000	1185.0	60.40%	780.3	44.63%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-43	-1.008e+02	0.0000	790.0	40.27%	451.6	25.83%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-42	-9.794e+01	0.0000	1072.0	54.64%	686.5	39.26%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-42	-9.722e+01	0.0000	640.0	32.62%	341.2	19.52%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-42	-9.705e+01	0.0000	507.0	25.84%	246.1	14.08%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-42	-9.673e+01	0.0000	590.0	30.07%	305.7	17.48%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-42	-9.672e+01	0.0000	753.0	38.38%	427.8	24.47%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-41	-9.569e+01	0.0000	686.0	34.96%	377.8	21.61%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-40	-9.394e+01	0.0000	690.0	35.17%	382.5	21.88%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-40	-9.388e+01	0.0000	1958.0	99.80%	1653.8	94.59%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-40	-9.379e+01	0.0000	441.0	22.48%	204.3	11.68%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-39	-9.180e+01	0.0000	1948.0	99.29%	1631.4	93.31%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-39	-9.157e+01	0.0000	625.0	31.86%	336.2	19.23%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-39	-9.098e+01	0.0000	651.0	33.18%	356.3	20.38%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-39	-9.084e+01	0.0000	609.0	31.04%	325.2	18.60%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-38	-8.892e+01	0.0000	486.0	24.77%	239.4	13.69%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-38	-8.877e+01	0.0000	657.0	33.49%	363.1	20.77%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-38	-8.769e+01	0.0000	548.0	27.93%	284.1	16.25%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-37	-8.684e+01	0.0000	687.0	35.02%	388.7	22.23%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-36	-8.506e+01	0.0000	485.0	24.72%	242.4	13.86%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-36	-8.441e+01	0.0000	674.0	34.35%	382.0	21.85%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-36	-8.418e+01	0.0000	595.0	30.33%	322.7	18.46%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-35	-8.211e+01	0.0000	544.0	27.73%	287.8	16.46%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-35	-8.209e+01	0.0000	640.0	32.62%	358.4	20.50%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-35	-8.063e+01	0.0000	521.0	26.55%	272.1	15.56%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-34	-8.029e+01	0.0000	533.0	27.17%	281.1	16.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-34	-7.959e+01	0.0000	415.0	21.15%	199.3	11.40%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-33	-7.718e+01	0.0000	330.0	16.82%	145.8	8.34%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-33	-7.631e+01	0.0000	670.0	34.15%	388.6	22.22%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-32	-7.534e+01	0.0000	561.0	28.59%	307.8	17.60%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-32	-7.526e+01	0.0000	650.0	33.13%	374.7	21.43%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-32	-7.522e+01	0.0000	451.0	22.99%	228.8	13.09%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-32	-7.519e+01	0.0000	343.0	17.48%	155.1	8.87%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-32	-7.478e+01	0.0000	423.0	21.56%	209.8	12.00%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-32	-7.374e+01	0.0000	512.0	26.10%	273.0	15.62%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-31	-7.351e+01	0.0000	389.0	19.83%	187.4	10.72%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-31	-7.179e+01	0.0000	554.0	28.24%	306.0	17.50%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-31	-7.161e+01	0.0000	323.0	16.46%	145.6	8.33%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-30	-6.951e+01	0.0000	622.0	31.70%	360.1	20.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-30	-6.928e+01	0.0000	590.0	30.07%	336.4	19.24%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-29	-6.831e+01	0.0000	367.0	18.71%	177.3	10.14%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-29	-6.825e+01	0.0000	358.0	18.25%	171.4	9.80%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-28	-6.665e+01	0.0000	634.0	32.31%	373.9	21.39%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-28	-6.527e+01	0.0000	402.0	20.49%	204.4	11.69%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-27	-6.441e+01	0.0000	460.0	23.45%	246.6	14.10%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-27	-6.430e+01	0.0000	295.0	15.04%	133.5	7.63%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-27	-6.415e+01	0.0000	367.0	18.71%	182.0	10.41%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-26	-6.192e+01	0.0000	259.0	13.20%	112.4	6.43%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-26	-6.073e+01	0.0000	388.0	19.78%	199.4	11.40%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-25	-5.966e+01	0.0000	295.0	15.04%	137.3	7.85%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-25	-5.926e+01	0.0000	494.0	25.18%	277.5	15.87%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-24	-5.705e+01	0.0000	305.0	15.55%	146.5	8.38%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-23	-5.505e+01	0.0000	352.0	17.94%	180.6	10.33%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-23	-5.393e+01	0.0000	305.0	15.55%	149.7	8.56%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-22	-5.215e+01	0.0000	218.0	11.11%	94.3	5.39%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-22	-5.199e+01	0.0000	154.0	7.85%	56.9	3.25%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-22	-5.172e+01	0.0000	447.0	22.78%	252.3	14.43%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-21	-5.042e+01	0.0000	339.0	17.28%	176.5	10.09%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-21	-5.001e+01	0.0000	533.0	27.17%	319.0	18.25%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-21	-4.993e+01	0.0000	368.0	18.76%	197.6	11.30%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-21	-4.983e+01	0.0000	513.0	26.15%	304.7	17.43%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-21	-4.978e+01	0.0000	237.0	12.08%	109.0	6.23%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-21	-4.905e+01	0.0000	280.0	14.27%	137.8	7.88%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-20	-4.767e+01	0.0000	360.0	18.35%	194.6	11.13%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-20	-4.767e+01	0.0000	360.0	18.35%	194.6	11.13%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-20	-4.749e+01	0.0000	330.0	16.82%	173.6	9.93%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-20	-4.749e+01	0.0000	330.0	16.82%	173.6	9.93%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-20	-4.673e+01	0.0000	313.0	15.95%	162.0	9.27%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-19	-4.594e+01	0.0000	259.0	13.20%	126.5	7.24%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-19	-4.564e+01	0.0000	242.0	12.33%	115.2	6.59%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-19	-4.564e+01	0.0000	242.0	12.33%	115.2	6.59%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-19	-4.471e+01	0.0000	324.0	16.51%	172.4	9.86%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-19	-4.432e+01	0.0000	420.0	21.41%	243.0	13.90%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-19	-4.430e+01	0.0000	234.0	11.93%	111.6	6.38%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-18	-4.358e+01	0.0000	346.0	17.64%	189.5	10.84%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-18	-4.168e+01	0.0000	215.0	10.96%	101.9	5.83%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-17	-4.095e+01	0.0000	217.0	11.06%	103.1	5.90%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-16	-3.837e+01	0.0000	383.0	19.52%	223.8	12.80%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-16	-3.766e+01	0.0000	444.0	22.63%	270.0	15.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-15	-3.631e+01	0.0000	294.0	14.98%	161.3	9.22%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-14	-3.443e+01	0.0000	285.0	14.53%	157.4	9.00%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-14	-3.252e+01	0.0000	242.0	12.33%	129.2	7.39%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-14	-3.238e+01	0.0000	157.0	8.00%	72.4	4.14%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-13	-3.072e+01	0.0000	285.0	14.53%	162.5	9.30%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-13	-3.066e+01	0.0000	243.0	12.39%	132.8	7.59%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-13	-3.037e+01	0.0000	104.0	5.30%	41.2	2.36%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-12	-2.976e+01	0.0000	261.0	13.30%	146.2	8.36%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-12	-2.945e+01	0.0000	288.0	14.68%	166.8	9.54%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-12	-2.834e+01	0.0000	193.0	9.84%	100.4	5.75%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-11	-2.748e+01	0.0000	168.0	8.56%	84.3	4.82%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-11	-2.703e+01	0.0000	105.0	5.35%	44.7	2.56%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-11	-2.654e+01	0.0000	165.0	8.41%	83.0	4.75%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-10	-2.421e+01	0.0000	58.0	2.96%	19.8	1.13%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-10	-2.341e+01	0.0000	170.0	8.66%	90.3	5.17%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-9	-2.133e+01	0.0000	57.0	2.91%	20.6	1.18%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-8	-2.071e+01	0.0000	106.0	5.40%	51.0	2.92%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-8	-1.980e+01	0.0000	139.0	7.08%	73.0	4.18%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-7	-1.772e+01	0.0000	141.0	7.19%	77.9	4.46%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-7	-1.757e+01	0.0000	135.0	6.88%	73.3	4.19%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-7	-1.707e+01	0.0000	82.0	4.18%	38.1	2.18%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-7	-1.658e+01	0.0000	234.0	11.93%	147.6	8.44%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-7	-1.652e+01	0.0000	101.0	5.15%	51.4	2.94%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-6	-1.495e+01	0.0000	55.0	2.80%	23.6	1.35%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-6	-1.404e+01	0.0000	25.0	1.27%	7.8	0.45%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-5	-1.309e+01	0.0000	46.0	2.34%	19.8	1.13%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-1.139e+01	0.0000	32.0	1.63%	12.3	0.70%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-1.061e+01	0.0000	122.0	6.22%	74.8	4.28%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.044e+01	0.0000	67.0	3.41%	35.9	2.06%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-3	-8.845e+00	0.0001	111.0	5.66%	69.7	3.99%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-3	-7.887e+00	0.0004	58.0	2.96%	32.6	1.87%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-7.192e+00	0.0008	202.0	10.30%	144.1	8.24%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-3	-7.162e+00	0.0008	13.0	0.66%	4.5	0.26%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-6.804e+00	0.0011	153.0	7.80%	107.0	6.12%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-4.500e+00	0.0112	20.0	1.02%	10.8	0.62%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-4.150e+00	0.0158	35.0	1.78%	21.3	1.22%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.794e+00	0.0612	67.0	3.41%	49.9	2.85%