Information for 25-AGCAAGACAG (Motif 54)

C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C A C G T
p-value:1e-80
log p-value:-1.852e+02
Information Content per bp:1.988
Number of Target Sequences with motif1916.0
Percentage of Target Sequences with motif97.66%
Number of Background Sequences with motif1484.3
Percentage of Background Sequences with motif84.89%
Average Position of motif in Targets3779.7 +/- 4326.2bp
Average Position of motif in Background2015.2 +/- 2085.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)6.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGCAAGACAG
-TCTAGACA-
 C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGCAAGACAG----
CAAATCCAGACATCACA
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AGCAAGACAG
--CCAGACAG
 C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGCAAGACAG
AGGTGNCAGACAG
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGCAAGACAG--
--CCAGACRSVB
 C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGCAAGACAG----
AACACCAAAACAAAGGA
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGCAAGACAG-
-----CACAGN
 C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGCAAGACAG
AGGTGHCAGACA-
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGCAAGACAG
---TTGACAG
 C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G
A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGCAAGACAG-
---TTGACAGG
 C G T A A C T G A G T C C G T A G T C A A C T G C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G