Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1962)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1721)	% of Background Sequences with Motif
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-145	-3.360e+02	0.0000	1725.0	87.92%	1065.8	61.93%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-136	-3.143e+02	0.0000	1596.0	81.35%	939.1	54.57%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-130	-3.016e+02	0.0000	1487.0	75.79%	840.6	48.85%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-130	-3.003e+02	0.0000	1812.0	92.35%	1204.3	69.98%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-124	-2.861e+02	0.0000	1025.0	52.24%	462.4	26.87%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-122	-2.830e+02	0.0000	1565.0	79.77%	933.9	54.27%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-120	-2.772e+02	0.0000	1817.0	92.61%	1230.1	71.48%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-119	-2.753e+02	0.0000	1872.0	95.41%	1311.2	76.19%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-118	-2.727e+02	0.0000	1489.0	75.89%	866.7	50.36%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-116	-2.688e+02	0.0000	1720.0	87.67%	1115.7	64.83%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-116	-2.680e+02	0.0000	1443.0	73.55%	826.2	48.01%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-115	-2.660e+02	0.0000	1787.0	91.08%	1200.7	69.77%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-115	-2.652e+02	0.0000	1538.0	78.39%	921.2	53.53%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-114	-2.629e+02	0.0000	1644.0	83.79%	1034.4	60.11%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-114	-2.629e+02	0.0000	1525.0	77.73%	910.6	52.91%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-112	-2.596e+02	0.0000	1778.0	90.62%	1194.0	69.38%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-111	-2.571e+02	0.0000	1600.0	81.55%	992.2	57.66%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-111	-2.566e+02	0.0000	1815.0	92.51%	1245.1	72.36%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-111	-2.560e+02	0.0000	1417.0	72.22%	812.6	47.22%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-111	-2.559e+02	0.0000	1678.0	85.52%	1079.0	62.70%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-110	-2.549e+02	0.0000	1822.0	92.86%	1256.7	73.03%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-109	-2.525e+02	0.0000	1761.0	89.76%	1179.1	68.52%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-109	-2.522e+02	0.0000	1341.0	68.35%	746.8	43.40%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-108	-2.497e+02	0.0000	1673.0	85.27%	1078.5	62.67%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-107	-2.486e+02	0.0000	1815.0	92.51%	1252.5	72.78%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-107	-2.481e+02	0.0000	1651.0	84.15%	1055.6	61.34%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-107	-2.474e+02	0.0000	1620.0	82.57%	1022.6	59.43%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-106	-2.455e+02	0.0000	1776.0	90.52%	1204.0	69.97%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-106	-2.454e+02	0.0000	1783.0	90.88%	1213.6	70.52%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-105	-2.418e+02	0.0000	1542.0	78.59%	946.5	55.00%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-104	-2.405e+02	0.0000	1744.0	88.89%	1169.6	67.97%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-103	-2.384e+02	0.0000	1341.0	68.35%	758.6	44.08%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-103	-2.383e+02	0.0000	1628.0	82.98%	1039.3	60.39%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-103	-2.382e+02	0.0000	1307.0	66.62%	728.5	42.33%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-103	-2.374e+02	0.0000	1786.0	91.03%	1224.3	71.15%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-102	-2.369e+02	0.0000	1455.0	74.16%	865.6	50.30%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-102	-2.351e+02	0.0000	1866.0	95.11%	1336.1	77.64%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-101	-2.343e+02	0.0000	1311.0	66.82%	735.1	42.72%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-101	-2.342e+02	0.0000	1707.0	87.00%	1131.4	65.75%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-101	-2.338e+02	0.0000	1668.0	85.02%	1087.3	63.18%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-101	-2.329e+02	0.0000	1669.0	85.07%	1089.7	63.32%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-100	-2.321e+02	0.0000	1464.0	74.62%	878.6	51.06%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-100	-2.321e+02	0.0000	1602.0	81.65%	1017.1	59.11%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-100	-2.314e+02	0.0000	1788.0	91.13%	1232.5	71.62%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-100	-2.312e+02	0.0000	1620.0	82.57%	1038.0	60.32%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-100	-2.308e+02	0.0000	1384.0	70.54%	804.5	46.75%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-100	-2.306e+02	0.0000	1414.0	72.07%	832.1	48.35%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-99	-2.297e+02	0.0000	1749.0	89.14%	1185.0	68.86%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-98	-2.277e+02	0.0000	1759.0	89.65%	1199.5	69.70%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-98	-2.275e+02	0.0000	1892.0	96.43%	1383.6	80.40%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-98	-2.269e+02	0.0000	1391.0	70.90%	814.1	47.31%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-98	-2.258e+02	0.0000	1463.0	74.57%	883.4	51.33%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-97	-2.250e+02	0.0000	1826.0	93.07%	1288.0	74.85%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-97	-2.244e+02	0.0000	1077.0	54.89%	548.5	31.87%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-97	-2.239e+02	0.0000	1457.0	74.26%	879.4	51.10%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-97	-2.239e+02	0.0000	1802.0	91.85%	1257.3	73.06%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-96	-2.232e+02	0.0000	1568.0	79.92%	990.3	57.54%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-96	-2.231e+02	0.0000	1624.0	82.77%	1049.8	61.00%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-96	-2.230e+02	0.0000	1812.0	92.35%	1271.7	73.90%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-96	-2.230e+02	0.0000	1589.0	80.99%	1012.6	58.84%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-96	-2.229e+02	0.0000	1455.0	74.16%	878.1	51.02%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-96	-2.222e+02	0.0000	1571.0	80.07%	994.4	57.78%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-95	-2.207e+02	0.0000	1555.0	79.26%	979.6	56.92%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-95	-2.203e+02	0.0000	1730.0	88.18%	1171.4	68.07%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-95	-2.201e+02	0.0000	1797.0	91.59%	1254.1	72.87%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-95	-2.198e+02	0.0000	1454.0	74.11%	880.7	51.18%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-95	-2.194e+02	0.0000	1932.0	98.47%	1461.6	84.93%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-95	-2.191e+02	0.0000	1804.0	91.95%	1264.3	73.47%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-94	-2.184e+02	0.0000	1714.0	87.36%	1154.0	67.06%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-94	-2.184e+02	0.0000	1642.0	83.69%	1073.0	62.35%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-94	-2.176e+02	0.0000	1886.0	96.13%	1382.9	80.36%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-94	-2.175e+02	0.0000	1832.0	93.37%	1303.2	75.73%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-94	-2.170e+02	0.0000	1595.0	81.29%	1024.4	59.53%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-94	-2.170e+02	0.0000	1783.0	90.88%	1239.3	72.01%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-94	-2.168e+02	0.0000	1822.0	92.86%	1290.2	74.97%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-94	-2.168e+02	0.0000	1810.0	92.25%	1274.2	74.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-94	-2.166e+02	0.0000	1278.0	65.14%	722.9	42.01%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-94	-2.166e+02	0.0000	1278.0	65.14%	722.6	41.99%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-93	-2.163e+02	0.0000	1662.0	84.71%	1097.7	63.79%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-93	-2.160e+02	0.0000	1445.0	73.65%	875.9	50.90%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-93	-2.155e+02	0.0000	1789.0	91.18%	1248.2	72.53%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-92	-2.135e+02	0.0000	1311.0	66.82%	754.3	43.83%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-92	-2.134e+02	0.0000	1493.0	76.10%	924.6	53.73%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-92	-2.131e+02	0.0000	1153.0	58.77%	619.4	35.99%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-92	-2.130e+02	0.0000	1891.0	96.38%	1394.7	81.05%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-91	-2.117e+02	0.0000	1794.0	91.44%	1258.4	73.13%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-91	-2.115e+02	0.0000	1398.0	71.25%	835.3	48.54%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-91	-2.113e+02	0.0000	1458.0	74.31%	892.3	51.85%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-91	-2.113e+02	0.0000	1757.0	89.55%	1212.2	70.44%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-91	-2.101e+02	0.0000	1843.0	93.93%	1325.6	77.03%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-91	-2.099e+02	0.0000	1379.0	70.29%	819.2	47.60%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-90	-2.091e+02	0.0000	1530.0	77.98%	965.2	56.08%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-90	-2.089e+02	0.0000	1883.0	95.97%	1385.9	80.53%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-90	-2.088e+02	0.0000	1852.0	94.39%	1340.0	77.87%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-89	-2.066e+02	0.0000	1479.0	75.38%	917.4	53.31%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-89	-2.059e+02	0.0000	1670.0	85.12%	1116.9	64.90%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-89	-2.056e+02	0.0000	1750.0	89.19%	1209.9	70.31%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-89	-2.054e+02	0.0000	1606.0	81.86%	1047.7	60.88%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-89	-2.053e+02	0.0000	1820.0	92.76%	1298.9	75.48%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-89	-2.052e+02	0.0000	982.0	50.05%	490.8	28.52%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-89	-2.051e+02	0.0000	1461.0	74.46%	901.2	52.37%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-89	-2.050e+02	0.0000	1464.0	74.62%	904.3	52.55%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-88	-2.049e+02	0.0000	1765.0	89.96%	1228.4	71.38%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-88	-2.047e+02	0.0000	1255.0	63.97%	713.0	41.43%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-88	-2.041e+02	0.0000	1911.0	97.40%	1435.5	83.42%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-88	-2.040e+02	0.0000	1439.0	73.34%	881.6	51.23%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-88	-2.037e+02	0.0000	1611.0	82.11%	1054.6	61.28%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-88	-2.031e+02	0.0000	1202.0	61.26%	669.4	38.90%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-88	-2.031e+02	0.0000	1510.0	76.96%	951.4	55.29%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-88	-2.030e+02	0.0000	1465.0	74.67%	907.8	52.75%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-88	-2.027e+02	0.0000	1343.0	68.45%	793.4	46.11%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-87	-2.026e+02	0.0000	1624.0	82.77%	1069.9	62.17%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-87	-2.021e+02	0.0000	1236.0	63.00%	699.6	40.65%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-87	-2.017e+02	0.0000	1218.0	62.08%	684.2	39.76%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-87	-2.014e+02	0.0000	1922.0	97.96%	1457.5	84.69%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-87	-2.004e+02	0.0000	1335.0	68.04%	788.2	45.80%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-86	-2.001e+02	0.0000	1829.0	93.22%	1315.4	76.44%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-86	-2.000e+02	0.0000	1118.0	56.98%	602.4	35.01%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-86	-1.999e+02	0.0000	1854.0	94.50%	1351.0	78.50%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-86	-1.998e+02	0.0000	1570.0	80.02%	1015.9	59.03%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-86	-1.998e+02	0.0000	1570.0	80.02%	1015.3	59.00%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-86	-1.998e+02	0.0000	1844.0	93.99%	1336.8	77.68%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-86	-1.997e+02	0.0000	1713.0	87.31%	1171.7	68.09%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-86	-1.996e+02	0.0000	1858.0	94.70%	1356.5	78.83%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-86	-1.995e+02	0.0000	1305.0	66.51%	762.6	44.32%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-86	-1.993e+02	0.0000	1547.0	78.85%	992.8	57.69%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-85	-1.979e+02	0.0000	1922.0	97.96%	1460.9	84.90%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-85	-1.977e+02	0.0000	1567.0	79.87%	1014.9	58.98%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-85	-1.976e+02	0.0000	1343.0	68.45%	798.8	46.42%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-85	-1.972e+02	0.0000	1862.0	94.90%	1364.9	79.32%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-85	-1.970e+02	0.0000	1702.0	86.75%	1161.8	67.51%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-85	-1.964e+02	0.0000	1675.0	85.37%	1131.9	65.78%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-85	-1.962e+02	0.0000	1497.0	76.30%	946.0	54.97%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-85	-1.961e+02	0.0000	1915.0	97.60%	1449.2	84.21%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-85	-1.960e+02	0.0000	1940.0	98.88%	1497.3	87.01%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-84	-1.953e+02	0.0000	1383.0	70.49%	837.2	48.65%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-84	-1.953e+02	0.0000	1873.0	95.46%	1382.5	80.34%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-84	-1.949e+02	0.0000	1469.0	74.87%	919.4	53.43%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-84	-1.945e+02	0.0000	1557.0	79.36%	1007.1	58.52%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-84	-1.938e+02	0.0000	1376.0	70.13%	832.2	48.36%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-83	-1.930e+02	0.0000	1597.0	81.40%	1050.4	61.04%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-83	-1.929e+02	0.0000	1639.0	83.54%	1096.0	63.69%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-83	-1.917e+02	0.0000	1637.0	83.44%	1095.0	63.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-83	-1.914e+02	0.0000	1345.0	68.55%	806.9	46.89%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-83	-1.913e+02	0.0000	1704.0	86.85%	1169.1	67.94%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-82	-1.896e+02	0.0000	1276.0	65.04%	747.0	43.41%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-82	-1.894e+02	0.0000	1500.0	76.45%	955.7	55.54%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-82	-1.888e+02	0.0000	1824.0	92.97%	1319.0	76.65%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-81	-1.879e+02	0.0000	1592.0	81.14%	1050.6	61.05%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-81	-1.872e+02	0.0000	1914.0	97.55%	1455.1	84.56%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-81	-1.872e+02	0.0000	1177.0	59.99%	663.4	38.55%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-80	-1.865e+02	0.0000	1906.0	97.15%	1442.1	83.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-80	-1.860e+02	0.0000	1839.0	93.73%	1342.2	77.99%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-80	-1.858e+02	0.0000	1274.0	64.93%	748.8	43.51%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-80	-1.858e+02	0.0000	1757.0	89.55%	1237.1	71.89%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-80	-1.856e+02	0.0000	1356.0	69.11%	822.4	47.79%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-80	-1.848e+02	0.0000	1311.0	66.82%	782.1	45.45%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-80	-1.844e+02	0.0000	834.0	42.51%	397.9	23.12%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-79	-1.837e+02	0.0000	1206.0	61.47%	691.7	40.20%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-79	-1.830e+02	0.0000	1340.0	68.30%	810.2	47.08%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-79	-1.823e+02	0.0000	1595.0	81.29%	1059.0	61.54%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-78	-1.816e+02	0.0000	1435.0	73.14%	900.6	52.33%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-78	-1.808e+02	0.0000	1242.0	63.30%	725.2	42.14%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-78	-1.797e+02	0.0000	1383.0	70.49%	853.7	49.61%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-77	-1.787e+02	0.0000	1276.0	65.04%	757.7	44.03%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-77	-1.783e+02	0.0000	1362.0	69.42%	835.5	48.55%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-77	-1.782e+02	0.0000	1232.0	62.79%	719.3	41.80%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-77	-1.775e+02	0.0000	1898.0	96.74%	1437.5	83.53%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-77	-1.774e+02	0.0000	1075.0	54.79%	588.2	34.18%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-76	-1.769e+02	0.0000	1881.0	95.87%	1411.2	82.01%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-76	-1.757e+02	0.0000	1890.0	96.33%	1426.7	82.91%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-76	-1.755e+02	0.0000	1085.0	55.30%	598.7	34.79%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-76	-1.753e+02	0.0000	1898.0	96.74%	1439.4	83.64%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-76	-1.751e+02	0.0000	1071.0	54.59%	587.7	34.15%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-75	-1.749e+02	0.0000	1191.0	60.70%	687.5	39.95%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-75	-1.745e+02	0.0000	1270.0	64.73%	756.5	43.96%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-75	-1.727e+02	0.0000	855.0	43.58%	422.6	24.55%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-75	-1.727e+02	0.0000	1561.0	79.56%	1034.7	60.13%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-74	-1.725e+02	0.0000	1058.0	53.92%	579.8	33.69%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-74	-1.716e+02	0.0000	1879.0	95.77%	1413.0	82.11%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-73	-1.699e+02	0.0000	1480.0	75.43%	956.9	55.61%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-73	-1.696e+02	0.0000	1394.0	71.05%	874.3	50.80%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-72	-1.669e+02	0.0000	1943.0	99.03%	1529.0	88.85%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-72	-1.663e+02	0.0000	1474.0	75.13%	954.9	55.49%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-71	-1.657e+02	0.0000	1148.0	58.51%	660.2	38.36%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-71	-1.654e+02	0.0000	1652.0	84.20%	1138.6	66.17%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-71	-1.643e+02	0.0000	1952.0	99.49%	1551.7	90.17%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-71	-1.642e+02	0.0000	1317.0	67.13%	809.6	47.05%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-71	-1.641e+02	0.0000	1115.0	56.83%	634.4	36.87%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-70	-1.634e+02	0.0000	1277.0	65.09%	774.0	44.98%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-70	-1.628e+02	0.0000	1917.0	97.71%	1482.7	86.16%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-70	-1.624e+02	0.0000	1079.0	54.99%	606.4	35.24%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-70	-1.615e+02	0.0000	1031.0	52.55%	568.5	33.04%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-69	-1.610e+02	0.0000	1440.0	73.39%	927.8	53.92%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-69	-1.598e+02	0.0000	1155.0	58.87%	673.0	39.11%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-68	-1.588e+02	0.0000	821.0	41.85%	409.1	23.77%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-68	-1.585e+02	0.0000	977.0	49.80%	528.2	30.69%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-68	-1.580e+02	0.0000	1099.0	56.01%	627.7	36.48%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-68	-1.577e+02	0.0000	1961.0	99.95%	1583.9	92.04%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-68	-1.573e+02	0.0000	1002.0	51.07%	549.3	31.92%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-68	-1.571e+02	0.0000	920.0	46.89%	485.5	28.21%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-68	-1.568e+02	0.0000	1906.0	97.15%	1469.6	85.40%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-67	-1.563e+02	0.0000	1037.0	52.85%	578.8	33.63%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-67	-1.561e+02	0.0000	1218.0	62.08%	730.8	42.47%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-67	-1.553e+02	0.0000	1391.0	70.90%	887.0	51.55%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-67	-1.551e+02	0.0000	1008.0	51.38%	556.9	32.36%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-67	-1.549e+02	0.0000	1368.0	69.72%	866.2	50.33%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-65	-1.516e+02	0.0000	1934.0	98.57%	1523.5	88.53%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-65	-1.515e+02	0.0000	1927.0	98.22%	1511.0	87.80%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-65	-1.513e+02	0.0000	1741.0	88.74%	1254.7	72.91%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-65	-1.502e+02	0.0000	1066.0	54.33%	608.6	35.36%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-65	-1.498e+02	0.0000	1807.0	92.10%	1336.5	77.67%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-64	-1.493e+02	0.0000	931.0	47.45%	501.5	29.14%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-64	-1.484e+02	0.0000	1389.0	70.80%	893.2	51.90%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-64	-1.481e+02	0.0000	969.0	49.39%	533.0	30.97%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-64	-1.479e+02	0.0000	1147.0	58.46%	678.7	39.44%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-63	-1.469e+02	0.0000	1182.0	60.24%	709.9	41.25%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-63	-1.465e+02	0.0000	1131.0	57.65%	666.2	38.71%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-63	-1.463e+02	0.0000	1050.0	53.52%	599.7	34.85%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-63	-1.459e+02	0.0000	1036.0	52.80%	588.5	34.20%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-62	-1.447e+02	0.0000	707.0	36.03%	340.0	19.76%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-62	-1.439e+02	0.0000	1223.0	62.33%	748.4	43.49%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-61	-1.425e+02	0.0000	1050.0	53.52%	604.0	35.10%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-61	-1.417e+02	0.0000	1055.0	53.77%	608.7	35.37%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-61	-1.408e+02	0.0000	1875.0	95.57%	1437.5	83.53%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-60	-1.403e+02	0.0000	1105.0	56.32%	651.5	37.86%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-60	-1.399e+02	0.0000	761.0	38.79%	382.9	22.25%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-60	-1.398e+02	0.0000	1254.0	63.91%	780.8	45.37%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-60	-1.394e+02	0.0000	836.0	42.61%	438.5	25.48%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-60	-1.386e+02	0.0000	860.0	43.83%	457.9	26.61%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-59	-1.372e+02	0.0000	1801.0	91.79%	1343.0	78.04%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-59	-1.366e+02	0.0000	969.0	49.39%	544.4	31.63%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-58	-1.355e+02	0.0000	624.0	31.80%	289.1	16.80%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-58	-1.354e+02	0.0000	1413.0	72.02%	931.4	54.12%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-57	-1.335e+02	0.0000	1954.0	99.59%	1582.5	91.96%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-57	-1.335e+02	0.0000	1949.0	99.34%	1571.0	91.29%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-57	-1.320e+02	0.0000	1651.0	84.15%	1175.5	68.31%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-57	-1.316e+02	0.0000	886.0	45.16%	484.3	28.15%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-57	-1.314e+02	0.0000	1935.0	98.62%	1543.6	89.70%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-56	-1.305e+02	0.0000	1035.0	52.75%	604.6	35.13%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-56	-1.297e+02	0.0000	895.0	45.62%	493.8	28.69%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-56	-1.295e+02	0.0000	933.0	47.55%	523.5	30.42%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-56	-1.293e+02	0.0000	742.0	37.82%	378.7	22.00%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-56	-1.290e+02	0.0000	1028.0	52.40%	600.7	34.91%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-55	-1.288e+02	0.0000	1857.0	94.65%	1424.4	82.77%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-55	-1.279e+02	0.0000	758.0	38.63%	391.1	22.72%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-55	-1.267e+02	0.0000	1360.0	69.32%	892.7	51.88%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-54	-1.264e+02	0.0000	522.0	26.61%	228.9	13.30%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-54	-1.261e+02	0.0000	946.0	48.22%	537.5	31.23%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-54	-1.260e+02	0.0000	777.0	39.60%	407.3	23.67%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-54	-1.259e+02	0.0000	1892.0	96.43%	1477.9	85.88%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-53	-1.241e+02	0.0000	886.0	45.16%	492.8	28.64%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-53	-1.232e+02	0.0000	1418.0	72.27%	951.0	55.26%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-52	-1.211e+02	0.0000	809.0	41.23%	436.1	25.34%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-52	-1.205e+02	0.0000	1249.0	63.66%	799.3	46.44%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-52	-1.204e+02	0.0000	591.0	30.12%	279.9	16.27%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-52	-1.198e+02	0.0000	659.0	33.59%	327.1	19.01%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-52	-1.198e+02	0.0000	922.0	46.99%	526.0	30.57%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-51	-1.197e+02	0.0000	952.0	48.52%	549.0	31.90%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-51	-1.197e+02	0.0000	1206.0	61.47%	762.4	44.30%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-51	-1.188e+02	0.0000	782.0	39.86%	418.3	24.31%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-51	-1.188e+02	0.0000	698.0	35.58%	356.9	20.74%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-51	-1.185e+02	0.0000	646.0	32.93%	319.0	18.54%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-51	-1.181e+02	0.0000	753.0	38.38%	397.9	23.12%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-51	-1.174e+02	0.0000	1072.0	54.64%	650.3	37.79%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-50	-1.164e+02	0.0000	752.0	38.33%	398.6	23.16%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-50	-1.154e+02	0.0000	852.0	43.43%	475.9	27.65%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-50	-1.154e+02	0.0000	875.0	44.60%	494.0	28.70%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-49	-1.150e+02	0.0000	686.0	34.96%	351.9	20.45%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-49	-1.141e+02	0.0000	798.0	40.67%	435.2	25.29%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-49	-1.137e+02	0.0000	912.0	46.48%	524.4	30.47%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-49	-1.134e+02	0.0000	1241.0	63.25%	801.7	46.58%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-48	-1.126e+02	0.0000	549.0	27.98%	257.9	14.99%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-48	-1.114e+02	0.0000	882.0	44.95%	503.2	29.24%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-47	-1.103e+02	0.0000	902.0	45.97%	520.5	30.25%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-47	-1.088e+02	0.0000	1957.0	99.75%	1611.7	93.66%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-46	-1.082e+02	0.0000	539.0	27.47%	254.3	14.78%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-46	-1.078e+02	0.0000	1139.0	58.05%	719.4	41.80%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-46	-1.072e+02	0.0000	822.0	41.90%	461.5	26.82%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-46	-1.070e+02	0.0000	1092.0	55.66%	680.5	39.54%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-46	-1.066e+02	0.0000	609.0	31.04%	304.4	17.69%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-46	-1.062e+02	0.0000	1210.0	61.67%	783.9	45.55%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-45	-1.055e+02	0.0000	1330.0	67.79%	892.7	51.87%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-45	-1.053e+02	0.0000	1134.0	57.80%	718.1	41.73%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-45	-1.048e+02	0.0000	1185.0	60.40%	763.4	44.36%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-45	-1.044e+02	0.0000	1260.0	64.22%	830.5	48.26%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-45	-1.040e+02	0.0000	690.0	35.17%	365.9	21.26%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-45	-1.038e+02	0.0000	548.0	27.93%	264.2	15.35%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-44	-1.036e+02	0.0000	640.0	32.62%	329.2	19.13%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-44	-1.035e+02	0.0000	595.0	30.33%	297.4	17.28%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-44	-1.020e+02	0.0000	1009.0	51.43%	617.1	35.86%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-44	-1.019e+02	0.0000	650.0	33.13%	338.4	19.66%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-43	-9.937e+01	0.0000	966.0	49.24%	585.1	34.00%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-42	-9.868e+01	0.0000	531.0	27.06%	257.3	14.95%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-42	-9.855e+01	0.0000	305.0	15.55%	113.4	6.59%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-42	-9.845e+01	0.0000	561.0	28.59%	278.4	16.18%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-42	-9.839e+01	0.0000	602.0	30.68%	307.8	17.89%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-42	-9.713e+01	0.0000	646.0	32.93%	340.4	19.78%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-41	-9.601e+01	0.0000	507.0	25.84%	243.8	14.17%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-41	-9.594e+01	0.0000	625.0	31.86%	326.3	18.96%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-41	-9.590e+01	0.0000	980.0	49.95%	601.7	34.96%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-40	-9.373e+01	0.0000	533.0	27.17%	264.0	15.34%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-40	-9.345e+01	0.0000	657.0	33.49%	352.8	20.50%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-40	-9.333e+01	0.0000	1958.0	99.80%	1627.6	94.58%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-40	-9.235e+01	0.0000	521.0	26.55%	256.7	14.92%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-39	-9.159e+01	0.0000	825.0	42.05%	482.7	28.05%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-39	-9.139e+01	0.0000	389.0	19.83%	169.7	9.86%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-39	-9.086e+01	0.0000	749.0	38.18%	424.9	24.69%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-39	-9.010e+01	0.0000	687.0	35.02%	378.1	21.97%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-38	-8.837e+01	0.0000	485.0	24.72%	235.6	13.69%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-38	-8.812e+01	0.0000	790.0	40.27%	459.0	26.67%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-38	-8.767e+01	0.0000	632.0	32.21%	340.3	19.77%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-38	-8.762e+01	0.0000	441.0	22.48%	206.7	12.01%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-38	-8.760e+01	0.0000	793.0	40.42%	462.1	26.85%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-37	-8.733e+01	0.0000	827.0	42.15%	489.8	28.46%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-37	-8.679e+01	0.0000	651.0	33.18%	355.6	20.66%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-37	-8.597e+01	0.0000	295.0	15.04%	115.4	6.71%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-37	-8.555e+01	0.0000	589.0	30.02%	312.0	18.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-37	-8.540e+01	0.0000	494.0	25.18%	245.0	14.24%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-37	-8.528e+01	0.0000	601.0	30.63%	320.1	18.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-36	-8.438e+01	0.0000	590.0	30.07%	313.5	18.22%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-36	-8.405e+01	0.0000	460.0	23.45%	222.8	12.95%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-36	-8.404e+01	0.0000	640.0	32.62%	350.6	20.37%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-35	-8.289e+01	0.0000	560.0	28.54%	293.2	17.04%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-35	-8.245e+01	0.0000	367.0	18.71%	162.7	9.46%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-35	-8.184e+01	0.0000	1013.0	51.63%	648.7	37.70%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-35	-8.075e+01	0.0000	554.0	28.24%	291.0	16.91%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-34	-8.033e+01	0.0000	622.0	31.70%	341.6	19.85%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-34	-7.970e+01	0.0000	324.0	16.51%	137.8	8.01%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-34	-7.863e+01	0.0000	755.0	38.48%	445.0	25.86%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-34	-7.854e+01	0.0000	670.0	34.15%	379.3	22.04%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-33	-7.814e+01	0.0000	590.0	30.07%	320.6	18.63%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-31	-7.336e+01	0.0000	1948.0	99.29%	1622.5	94.29%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-31	-7.254e+01	0.0000	368.0	18.76%	172.0	9.99%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-31	-7.178e+01	0.0000	330.0	16.82%	147.5	8.57%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-30	-7.115e+01	0.0000	486.0	24.77%	253.1	14.70%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-29	-6.901e+01	0.0000	402.0	20.49%	198.0	11.51%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-29	-6.821e+01	0.0000	330.0	16.82%	150.3	8.73%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-29	-6.821e+01	0.0000	330.0	16.82%	150.1	8.72%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-29	-6.741e+01	0.0000	367.0	18.71%	175.8	10.22%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-28	-6.667e+01	0.0000	634.0	32.31%	367.4	21.35%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-28	-6.633e+01	0.0000	674.0	34.35%	398.2	23.14%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-28	-6.614e+01	0.0000	513.0	26.15%	278.1	16.16%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-27	-6.418e+01	0.0000	544.0	27.73%	303.3	17.62%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-27	-6.381e+01	0.0000	261.0	13.30%	110.2	6.40%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-27	-6.236e+01	0.0000	451.0	22.99%	238.3	13.85%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-26	-6.082e+01	0.0000	323.0	16.46%	152.2	8.84%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-26	-6.061e+01	0.0000	512.0	26.10%	284.4	16.52%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-26	-6.012e+01	0.0000	358.0	18.25%	176.2	10.24%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-25	-5.961e+01	0.0000	388.0	19.78%	197.7	11.49%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-25	-5.919e+01	0.0000	383.0	19.52%	194.2	11.28%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-25	-5.827e+01	0.0000	650.0	33.13%	391.1	22.72%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-24	-5.716e+01	0.0000	243.0	12.39%	104.7	6.09%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-24	-5.697e+01	0.0000	313.0	15.95%	149.5	8.69%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-24	-5.651e+01	0.0000	447.0	22.78%	242.5	14.09%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-23	-5.501e+01	0.0000	295.0	15.04%	139.2	8.09%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-23	-5.416e+01	0.0000	415.0	21.15%	222.6	12.94%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-23	-5.390e+01	0.0000	423.0	21.56%	229.0	13.31%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-23	-5.375e+01	0.0000	360.0	18.35%	184.3	10.71%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-23	-5.375e+01	0.0000	360.0	18.35%	184.3	10.71%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-21	-5.019e+01	0.0000	285.0	14.53%	137.3	7.98%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-21	-4.973e+01	0.0000	420.0	21.41%	231.9	13.48%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-21	-4.909e+01	0.0000	259.0	13.20%	121.2	7.04%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-21	-4.909e+01	0.0000	259.0	13.20%	121.1	7.04%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-20	-4.792e+01	0.0000	352.0	17.94%	185.2	10.76%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-20	-4.734e+01	0.0000	168.0	8.56%	66.0	3.84%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-20	-4.723e+01	0.0000	533.0	27.17%	318.1	18.49%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-20	-4.717e+01	0.0000	285.0	14.53%	140.0	8.14%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-19	-4.596e+01	0.0000	343.0	17.48%	181.1	10.53%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-17	-4.117e+01	0.0000	280.0	14.27%	143.6	8.34%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-17	-4.065e+01	0.0000	242.0	12.33%	118.5	6.89%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-17	-4.040e+01	0.0000	339.0	17.28%	185.8	10.80%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-17	-4.038e+01	0.0000	346.0	17.64%	190.0	11.04%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-17	-3.933e+01	0.0000	104.0	5.30%	35.8	2.08%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-16	-3.883e+01	0.0000	305.0	15.55%	163.7	9.51%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-15	-3.649e+01	0.0000	234.0	11.93%	117.1	6.80%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-15	-3.594e+01	0.0000	154.0	7.85%	66.1	3.84%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-14	-3.453e+01	0.0000	157.0	8.00%	69.8	4.06%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-14	-3.438e+01	0.0000	444.0	22.63%	271.9	15.80%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-14	-3.399e+01	0.0000	135.0	6.88%	56.2	3.26%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-14	-3.332e+01	0.0000	105.0	5.35%	39.7	2.31%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-14	-3.294e+01	0.0000	237.0	12.08%	123.9	7.20%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-13	-3.002e+01	0.0000	242.0	12.33%	130.7	7.60%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-13	-3.002e+01	0.0000	242.0	12.33%	130.7	7.60%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-12	-2.957e+01	0.0000	234.0	11.93%	125.6	7.30%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-12	-2.900e+01	0.0000	288.0	14.68%	164.2	9.54%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-12	-2.815e+01	0.0000	217.0	11.06%	115.5	6.71%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-12	-2.790e+01	0.0000	218.0	11.11%	116.7	6.78%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-11	-2.658e+01	0.0000	122.0	6.22%	54.5	3.17%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-10	-2.458e+01	0.0000	57.0	2.91%	18.9	1.10%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-10	-2.360e+01	0.0000	58.0	2.96%	19.4	1.13%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-9	-2.188e+01	0.0000	215.0	10.96%	122.0	7.09%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-9	-2.146e+01	0.0000	193.0	9.84%	108.0	6.27%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-9	-2.081e+01	0.0000	141.0	7.19%	72.2	4.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-8	-1.864e+01	0.0000	67.0	3.41%	27.7	1.61%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-7	-1.837e+01	0.0000	58.0	2.96%	22.2	1.29%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-7	-1.811e+01	0.0000	35.0	1.78%	10.2	0.59%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-7	-1.803e+01	0.0000	139.0	7.08%	74.1	4.30%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-7	-1.739e+01	0.0000	165.0	8.41%	93.3	5.42%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-7	-1.669e+01	0.0000	101.0	5.15%	50.9	2.96%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-7	-1.636e+01	0.0000	20.0	1.02%	4.8	0.28%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-5	-1.352e+01	0.0000	294.0	14.98%	197.5	11.48%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-5	-1.321e+01	0.0000	55.0	2.80%	24.8	1.44%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-5	-1.280e+01	0.0000	202.0	10.30%	128.9	7.49%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-5	-1.173e+01	0.0000	82.0	4.18%	43.6	2.53%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-4	-1.149e+01	0.0000	25.0	1.27%	8.1	0.47%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-4	-1.140e+01	0.0000	46.0	2.34%	20.3	1.18%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-4	-1.129e+01	0.0000	170.0	8.66%	107.3	6.23%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-1.108e+01	0.0000	32.0	1.63%	12.8	0.74%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-4	-1.079e+01	0.0000	106.0	5.40%	61.2	3.56%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-4	-9.968e+00	0.0000	67.0	3.41%	35.3	2.05%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-3	-8.121e+00	0.0003	153.0	7.80%	101.9	5.92%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-2	-5.137e+00	0.0059	13.0	0.66%	5.5	0.32%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-1	-4.456e+00	0.0116	111.0	5.66%	78.5	4.56%