Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1029)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 213705)	% of Background Sequences with Motif
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-135	-3.125e+02	0.0000	772.0	75.02%	78921.3	36.93%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-134	-3.086e+02	0.0000	927.0	90.09%	117194.7	54.83%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-126	-2.915e+02	0.0000	760.0	73.86%	79153.5	37.03%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-122	-2.827e+02	0.0000	780.0	75.80%	84537.0	39.55%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-122	-2.824e+02	0.0000	666.0	64.72%	62197.5	29.10%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-122	-2.816e+02	0.0000	937.0	91.06%	124225.6	58.12%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-119	-2.753e+02	0.0000	797.0	77.45%	89276.5	41.77%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-118	-2.740e+02	0.0000	769.0	74.73%	83395.4	39.02%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-118	-2.740e+02	0.0000	702.0	68.22%	69923.4	32.72%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-118	-2.718e+02	0.0000	890.0	86.49%	112340.6	52.56%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-117	-2.711e+02	0.0000	735.0	71.43%	76775.3	35.92%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-116	-2.690e+02	0.0000	826.0	80.27%	96793.7	45.29%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-116	-2.688e+02	0.0000	915.0	88.92%	119715.2	56.01%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-116	-2.677e+02	0.0000	929.0	90.28%	123974.4	58.00%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-116	-2.674e+02	0.0000	913.0	88.73%	119362.9	55.85%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-114	-2.640e+02	0.0000	907.0	88.14%	118193.3	55.30%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-114	-2.635e+02	0.0000	601.0	58.41%	53151.3	24.87%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-113	-2.620e+02	0.0000	869.0	84.45%	108348.7	50.69%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-112	-2.597e+02	0.0000	884.0	85.91%	112610.3	52.69%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-112	-2.590e+02	0.0000	725.0	70.46%	76408.8	35.75%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-112	-2.587e+02	0.0000	951.0	92.42%	132216.4	61.86%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-112	-2.580e+02	0.0000	755.0	73.37%	82691.5	38.69%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-111	-2.561e+02	0.0000	934.0	90.77%	127317.0	59.57%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-111	-2.557e+02	0.0000	762.0	74.05%	84486.8	39.53%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-110	-2.552e+02	0.0000	752.0	73.08%	82458.3	38.58%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-110	-2.548e+02	0.0000	935.0	90.86%	127830.8	59.81%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-110	-2.544e+02	0.0000	956.0	92.91%	134542.1	62.95%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-110	-2.543e+02	0.0000	978.0	95.04%	142182.7	66.52%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-110	-2.539e+02	0.0000	916.0	89.02%	122351.3	57.25%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-110	-2.535e+02	0.0000	663.0	64.43%	65253.0	30.53%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-110	-2.535e+02	0.0000	760.0	73.86%	84381.4	39.48%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-109	-2.521e+02	0.0000	916.0	89.02%	122636.0	57.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-109	-2.513e+02	0.0000	841.0	81.73%	103027.3	48.20%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-109	-2.511e+02	0.0000	897.0	87.17%	117460.2	54.96%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-108	-2.502e+02	0.0000	921.0	89.50%	124386.0	58.20%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-108	-2.495e+02	0.0000	900.0	87.46%	118540.6	55.46%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-108	-2.493e+02	0.0000	947.0	92.03%	132447.7	61.97%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-107	-2.483e+02	0.0000	923.0	89.70%	125286.0	58.62%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-107	-2.479e+02	0.0000	782.0	76.00%	89949.4	42.08%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-107	-2.474e+02	0.0000	962.0	93.49%	137675.1	64.41%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-107	-2.473e+02	0.0000	894.0	86.88%	117256.8	54.86%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-107	-2.468e+02	0.0000	850.0	82.60%	105932.7	49.56%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-106	-2.462e+02	0.0000	826.0	80.27%	100232.0	46.90%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-106	-2.449e+02	0.0000	685.0	66.57%	70531.3	33.00%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-106	-2.446e+02	0.0000	877.0	85.23%	113160.7	52.94%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-106	-2.444e+02	0.0000	821.0	79.79%	99330.0	46.47%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-106	-2.444e+02	0.0000	976.0	94.85%	143070.8	66.94%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-106	-2.444e+02	0.0000	803.0	78.04%	95175.2	44.53%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-105	-2.439e+02	0.0000	747.0	72.59%	83041.6	38.85%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-105	-2.419e+02	0.0000	822.0	79.88%	99945.8	46.76%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-104	-2.418e+02	0.0000	865.0	84.06%	110505.1	51.70%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-104	-2.411e+02	0.0000	686.0	66.67%	71238.0	33.33%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-104	-2.410e+02	0.0000	844.0	82.02%	105376.9	49.30%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-104	-2.408e+02	0.0000	937.0	91.06%	130711.2	61.16%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-104	-2.402e+02	0.0000	972.0	94.46%	142324.2	66.59%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-103	-2.394e+02	0.0000	915.0	88.92%	124407.4	58.21%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-103	-2.390e+02	0.0000	898.0	87.27%	119698.9	56.00%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-103	-2.385e+02	0.0000	957.0	93.00%	137467.4	64.32%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-103	-2.377e+02	0.0000	810.0	78.72%	97815.1	45.77%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-102	-2.369e+02	0.0000	872.0	84.74%	113089.7	52.91%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-102	-2.368e+02	0.0000	1005.0	97.67%	155933.8	72.96%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-102	-2.365e+02	0.0000	968.0	94.07%	141536.6	66.22%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-102	-2.358e+02	0.0000	815.0	79.20%	99263.9	46.44%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-102	-2.358e+02	0.0000	854.0	82.99%	108681.4	50.85%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-102	-2.358e+02	0.0000	689.0	66.96%	72562.1	33.95%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-102	-2.350e+02	0.0000	962.0	93.49%	139730.0	65.38%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-101	-2.345e+02	0.0000	809.0	78.62%	98083.4	45.89%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-101	-2.344e+02	0.0000	980.0	95.24%	146186.8	68.40%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-101	-2.334e+02	0.0000	781.0	75.90%	91932.2	43.01%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-101	-2.332e+02	0.0000	731.0	71.04%	81303.1	38.04%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-100	-2.320e+02	0.0000	731.0	71.04%	81489.7	38.13%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-100	-2.320e+02	0.0000	904.0	87.85%	122517.4	57.32%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-100	-2.314e+02	0.0000	784.0	76.19%	92910.2	43.47%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-100	-2.314e+02	0.0000	804.0	78.13%	97427.8	45.58%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-99	-2.302e+02	0.0000	858.0	83.38%	110598.4	51.75%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-99	-2.300e+02	0.0000	704.0	68.42%	76332.1	35.71%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-99	-2.283e+02	0.0000	763.0	74.15%	88783.7	41.54%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-98	-2.278e+02	0.0000	633.0	61.52%	63193.0	29.57%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-98	-2.278e+02	0.0000	918.0	89.21%	127209.0	59.52%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-98	-2.275e+02	0.0000	966.0	93.88%	142346.4	66.60%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-98	-2.265e+02	0.0000	949.0	92.23%	136882.0	64.04%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-98	-2.263e+02	0.0000	791.0	76.87%	95268.9	44.57%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-98	-2.259e+02	0.0000	970.0	94.27%	144021.3	67.38%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-97	-2.256e+02	0.0000	886.0	86.10%	118649.7	55.51%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-97	-2.255e+02	0.0000	659.0	64.04%	68295.7	31.95%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-97	-2.252e+02	0.0000	758.0	73.66%	88187.5	41.26%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-97	-2.247e+02	0.0000	725.0	70.46%	81346.4	38.06%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-97	-2.242e+02	0.0000	880.0	85.52%	117283.4	54.87%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-97	-2.240e+02	0.0000	738.0	71.72%	84139.6	39.37%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-96	-2.233e+02	0.0000	989.0	96.11%	151490.4	70.88%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-96	-2.228e+02	0.0000	745.0	72.40%	85793.8	40.14%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-96	-2.218e+02	0.0000	833.0	80.95%	105803.6	49.50%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-96	-2.218e+02	0.0000	915.0	88.92%	127361.1	59.59%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-96	-2.213e+02	0.0000	785.0	76.29%	94719.5	44.32%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-96	-2.212e+02	0.0000	920.0	89.41%	128914.7	60.32%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-95	-2.206e+02	0.0000	769.0	74.73%	91291.6	42.71%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-95	-2.205e+02	0.0000	668.0	64.92%	70715.7	33.09%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-95	-2.203e+02	0.0000	1007.0	97.86%	159604.9	74.68%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-95	-2.189e+02	0.0000	820.0	79.69%	103167.7	48.27%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-94	-2.187e+02	0.0000	678.0	65.89%	72894.7	34.11%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-94	-2.184e+02	0.0000	970.0	94.27%	145294.5	67.98%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-94	-2.169e+02	0.0000	793.0	77.07%	97243.4	45.50%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-93	-2.163e+02	0.0000	872.0	84.74%	116512.0	54.51%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-93	-2.161e+02	0.0000	757.0	73.57%	89410.0	41.83%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-93	-2.157e+02	0.0000	868.0	84.35%	115586.5	54.08%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-93	-2.151e+02	0.0000	792.0	76.97%	97309.4	45.53%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-93	-2.147e+02	0.0000	694.0	67.44%	76612.5	35.85%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-93	-2.146e+02	0.0000	987.0	95.92%	152195.6	71.21%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-93	-2.144e+02	0.0000	739.0	71.82%	85850.4	40.17%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-92	-2.139e+02	0.0000	961.0	93.39%	142977.7	66.90%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-92	-2.136e+02	0.0000	628.0	61.03%	64245.2	30.06%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-92	-2.128e+02	0.0000	754.0	73.28%	89292.5	41.78%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-92	-2.126e+02	0.0000	873.0	84.84%	117405.4	54.93%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-92	-2.125e+02	0.0000	968.0	94.07%	145613.2	68.13%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-91	-2.118e+02	0.0000	886.0	86.10%	120995.7	56.61%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-91	-2.117e+02	0.0000	992.0	96.40%	154670.5	72.37%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-91	-2.115e+02	0.0000	741.0	72.01%	86723.7	40.58%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-91	-2.110e+02	0.0000	819.0	79.59%	104252.3	48.78%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-91	-2.108e+02	0.0000	1010.0	98.15%	162640.8	76.10%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-91	-2.103e+02	0.0000	653.0	63.46%	69346.7	32.45%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-91	-2.101e+02	0.0000	714.0	69.39%	81344.2	38.06%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-90	-2.094e+02	0.0000	987.0	95.92%	153102.3	71.63%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-90	-2.091e+02	0.0000	929.0	90.28%	133676.8	62.54%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-90	-2.086e+02	0.0000	737.0	71.62%	86343.8	40.40%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-90	-2.084e+02	0.0000	599.0	58.21%	59762.4	27.96%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-90	-2.082e+02	0.0000	958.0	93.10%	142978.1	66.90%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-90	-2.077e+02	0.0000	1009.0	98.06%	162691.6	76.12%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-89	-2.062e+02	0.0000	952.0	92.52%	141353.6	66.14%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-89	-2.053e+02	0.0000	1001.0	97.28%	159505.7	74.63%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-89	-2.050e+02	0.0000	666.0	64.72%	72615.4	33.97%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-88	-2.047e+02	0.0000	628.0	61.03%	65514.2	30.65%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-88	-2.036e+02	0.0000	751.0	72.98%	90133.7	42.17%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-88	-2.030e+02	0.0000	748.0	72.69%	89585.5	41.91%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-88	-2.030e+02	0.0000	958.0	93.10%	143898.5	67.33%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-88	-2.028e+02	0.0000	681.0	66.18%	75870.2	35.50%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-88	-2.027e+02	0.0000	628.0	61.03%	65809.7	30.79%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-87	-2.024e+02	0.0000	893.0	86.78%	124537.0	58.27%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-87	-2.024e+02	0.0000	808.0	78.52%	103111.1	48.24%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-87	-2.024e+02	0.0000	523.0	50.83%	47704.9	22.32%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-87	-2.016e+02	0.0000	673.0	65.40%	74489.8	34.85%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-87	-2.011e+02	0.0000	912.0	88.63%	130092.5	60.87%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-87	-2.009e+02	0.0000	644.0	62.59%	69043.2	32.30%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-86	-1.994e+02	0.0000	884.0	85.91%	122634.7	57.38%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-86	-1.991e+02	0.0000	723.0	70.26%	84948.9	39.75%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-86	-1.985e+02	0.0000	709.0	68.90%	82159.2	38.44%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-85	-1.978e+02	0.0000	848.0	82.41%	113589.3	53.15%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-85	-1.971e+02	0.0000	977.0	94.95%	151531.4	70.90%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-85	-1.968e+02	0.0000	926.0	89.99%	134952.1	63.14%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-85	-1.961e+02	0.0000	760.0	73.86%	93342.0	43.67%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-84	-1.957e+02	0.0000	973.0	94.56%	150336.9	70.34%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-84	-1.946e+02	0.0000	704.0	68.42%	81776.2	38.26%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-84	-1.935e+02	0.0000	946.0	91.93%	141692.0	66.29%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-83	-1.921e+02	0.0000	1001.0	97.28%	161822.8	75.71%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-83	-1.917e+02	0.0000	662.0	64.33%	73896.1	34.57%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-82	-1.906e+02	0.0000	665.0	64.63%	74652.4	34.93%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-82	-1.905e+02	0.0000	943.0	91.64%	141290.6	66.11%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-82	-1.898e+02	0.0000	980.0	95.24%	153922.2	72.02%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-82	-1.894e+02	0.0000	481.0	46.74%	42656.7	19.96%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-81	-1.887e+02	0.0000	1011.0	98.25%	166955.0	78.11%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-81	-1.886e+02	0.0000	815.0	79.20%	107177.4	50.15%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-81	-1.873e+02	0.0000	716.0	69.58%	85456.6	39.98%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-81	-1.871e+02	0.0000	966.0	93.88%	149447.7	69.92%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-80	-1.865e+02	0.0000	691.0	67.15%	80475.4	37.65%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-80	-1.856e+02	0.0000	625.0	60.74%	67826.6	31.73%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-80	-1.854e+02	0.0000	621.0	60.35%	67102.2	31.40%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-80	-1.852e+02	0.0000	774.0	75.22%	98318.0	46.00%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-80	-1.848e+02	0.0000	865.0	84.06%	120254.4	56.26%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-80	-1.848e+02	0.0000	728.0	70.75%	88387.9	41.35%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-79	-1.838e+02	0.0000	647.0	62.88%	72258.5	33.81%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-79	-1.822e+02	0.0000	689.0	66.96%	80780.0	37.79%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-78	-1.817e+02	0.0000	611.0	59.38%	65825.5	30.80%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-78	-1.808e+02	0.0000	1007.0	97.86%	166481.3	77.89%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-77	-1.784e+02	0.0000	574.0	55.78%	59659.6	27.91%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-77	-1.781e+02	0.0000	676.0	65.69%	78868.1	36.90%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-77	-1.773e+02	0.0000	601.0	58.41%	64672.2	30.26%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-76	-1.770e+02	0.0000	731.0	71.04%	90369.9	42.28%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-76	-1.767e+02	0.0000	999.0	97.08%	163733.2	76.61%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-76	-1.765e+02	0.0000	694.0	67.44%	82756.8	38.72%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-76	-1.764e+02	0.0000	605.0	58.79%	65557.1	30.67%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-76	-1.751e+02	0.0000	731.0	71.04%	90714.7	42.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-76	-1.751e+02	0.0000	977.0	94.95%	155528.2	72.77%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-75	-1.729e+02	0.0000	776.0	75.41%	100981.0	47.25%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-75	-1.728e+02	0.0000	738.0	71.72%	92615.9	43.33%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-74	-1.726e+02	0.0000	973.0	94.56%	154549.8	72.31%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-74	-1.726e+02	0.0000	1012.0	98.35%	170309.3	79.68%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-74	-1.715e+02	0.0000	597.0	58.02%	64853.2	30.34%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-74	-1.712e+02	0.0000	611.0	59.38%	67483.0	31.57%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-74	-1.708e+02	0.0000	692.0	67.25%	83334.9	38.99%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-74	-1.706e+02	0.0000	790.0	76.77%	104613.8	48.95%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-73	-1.698e+02	0.0000	1021.0	99.22%	175544.1	82.13%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-73	-1.693e+02	0.0000	493.0	47.91%	47203.6	22.09%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-73	-1.682e+02	0.0000	974.0	94.66%	155730.4	72.86%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-72	-1.675e+02	0.0000	594.0	57.73%	64949.0	30.39%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-72	-1.674e+02	0.0000	968.0	94.07%	153802.6	71.96%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-72	-1.670e+02	0.0000	595.0	57.82%	65214.1	30.51%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-72	-1.663e+02	0.0000	629.0	61.13%	71685.8	33.54%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-72	-1.662e+02	0.0000	688.0	66.86%	83323.6	38.98%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-71	-1.645e+02	0.0000	454.0	44.12%	41628.4	19.48%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-71	-1.644e+02	0.0000	441.0	42.86%	39622.6	18.54%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-71	-1.640e+02	0.0000	586.0	56.95%	64052.5	29.97%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-71	-1.639e+02	0.0000	559.0	54.32%	59216.7	27.71%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-70	-1.633e+02	0.0000	611.0	59.38%	68780.6	32.18%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-70	-1.630e+02	0.0000	997.0	96.89%	165421.0	77.40%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-70	-1.624e+02	0.0000	630.0	61.22%	72536.5	33.94%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-70	-1.624e+02	0.0000	454.0	44.12%	41910.5	19.61%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-70	-1.619e+02	0.0000	641.0	62.29%	74746.4	34.97%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-70	-1.617e+02	0.0000	1006.0	97.76%	169503.4	79.31%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-69	-1.610e+02	0.0000	569.0	55.30%	61458.7	28.75%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-69	-1.603e+02	0.0000	613.0	59.57%	69669.2	32.60%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-69	-1.602e+02	0.0000	705.0	68.51%	87917.2	41.13%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-69	-1.602e+02	0.0000	563.0	54.71%	60509.1	28.31%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-69	-1.599e+02	0.0000	591.0	57.43%	65626.7	30.71%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-69	-1.595e+02	0.0000	499.0	48.49%	49588.3	23.20%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-69	-1.594e+02	0.0000	1018.0	98.93%	175740.6	82.22%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-69	-1.590e+02	0.0000	556.0	54.03%	59450.0	27.82%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-68	-1.585e+02	0.0000	608.0	59.09%	69024.9	32.29%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-68	-1.584e+02	0.0000	1005.0	97.67%	169665.9	79.38%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-68	-1.584e+02	0.0000	563.0	54.71%	60803.2	28.45%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-68	-1.581e+02	0.0000	522.0	50.73%	53663.8	25.11%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-68	-1.581e+02	0.0000	551.0	53.55%	58713.0	27.47%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-68	-1.569e+02	0.0000	512.0	49.76%	52143.7	24.40%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-66	-1.542e+02	0.0000	982.0	95.43%	161297.7	75.47%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-66	-1.536e+02	0.0000	1018.0	98.93%	176809.8	82.72%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-66	-1.522e+02	0.0000	502.0	48.79%	51179.5	23.95%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-66	-1.521e+02	0.0000	625.0	60.74%	73363.7	34.33%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-65	-1.510e+02	0.0000	570.0	55.39%	63279.2	29.61%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-65	-1.505e+02	0.0000	475.0	46.16%	46945.7	21.96%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-65	-1.503e+02	0.0000	489.0	47.52%	49276.6	23.06%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-65	-1.498e+02	0.0000	458.0	44.51%	44278.1	20.72%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-65	-1.498e+02	0.0000	564.0	54.81%	62390.1	29.19%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-64	-1.484e+02	0.0000	543.0	52.77%	58859.4	27.54%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-64	-1.482e+02	0.0000	434.0	42.18%	40694.8	19.04%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-64	-1.481e+02	0.0000	477.0	46.36%	47627.9	22.28%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-64	-1.474e+02	0.0000	517.0	50.24%	54474.2	25.49%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-63	-1.469e+02	0.0000	563.0	54.71%	62689.9	29.33%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-63	-1.465e+02	0.0000	594.0	57.73%	68478.2	32.04%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-63	-1.464e+02	0.0000	537.0	52.19%	58130.2	27.20%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-63	-1.458e+02	0.0000	509.0	49.47%	53358.0	24.96%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-62	-1.439e+02	0.0000	548.0	53.26%	60503.6	28.31%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-62	-1.428e+02	0.0000	574.0	55.78%	65413.4	30.61%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-61	-1.423e+02	0.0000	1013.0	98.45%	176356.9	82.51%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-61	-1.415e+02	0.0000	516.0	50.15%	55261.1	25.86%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-61	-1.414e+02	0.0000	446.0	43.34%	43565.2	20.38%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-61	-1.410e+02	0.0000	494.0	48.01%	51562.3	24.12%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-60	-1.400e+02	0.0000	411.0	39.94%	38251.7	17.90%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-60	-1.393e+02	0.0000	472.0	45.87%	48135.6	22.52%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-60	-1.389e+02	0.0000	361.0	35.08%	30916.3	14.46%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-60	-1.387e+02	0.0000	439.0	42.66%	42839.9	20.04%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-60	-1.386e+02	0.0000	550.0	53.45%	61763.0	28.90%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-59	-1.381e+02	0.0000	470.0	45.68%	47982.9	22.45%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-59	-1.381e+02	0.0000	579.0	56.27%	67161.5	31.42%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-59	-1.381e+02	0.0000	484.0	47.04%	50334.6	23.55%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-59	-1.361e+02	0.0000	411.0	39.94%	38798.0	18.15%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-58	-1.355e+02	0.0000	420.0	40.82%	40293.1	18.85%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-58	-1.355e+02	0.0000	527.0	51.21%	58193.8	27.23%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-58	-1.354e+02	0.0000	440.0	42.76%	43490.8	20.35%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-58	-1.342e+02	0.0000	529.0	51.41%	58763.6	27.49%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-57	-1.326e+02	0.0000	430.0	41.79%	42299.9	19.79%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-57	-1.322e+02	0.0000	537.0	52.19%	60545.4	28.33%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-57	-1.321e+02	0.0000	466.0	45.29%	48268.4	22.58%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-57	-1.318e+02	0.0000	295.0	28.67%	22567.5	10.56%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-56	-1.300e+02	0.0000	468.0	45.48%	48934.7	22.90%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-56	-1.299e+02	0.0000	560.0	54.42%	65145.2	30.48%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-55	-1.276e+02	0.0000	1021.0	99.22%	183283.5	85.75%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-54	-1.252e+02	0.0000	354.0	34.40%	31652.1	14.81%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-53	-1.233e+02	0.0000	450.0	43.73%	47018.3	22.00%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-52	-1.215e+02	0.0000	411.0	39.94%	40952.7	19.16%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-52	-1.206e+02	0.0000	418.0	40.62%	42210.4	19.75%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-51	-1.177e+02	0.0000	381.0	37.03%	36797.4	17.22%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-50	-1.170e+02	0.0000	361.0	35.08%	33829.5	15.83%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-50	-1.169e+02	0.0000	421.0	40.91%	43286.5	20.25%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-50	-1.163e+02	0.0000	446.0	43.34%	47517.4	22.23%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-50	-1.162e+02	0.0000	364.0	35.37%	34403.8	16.10%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-50	-1.159e+02	0.0000	355.0	34.50%	33086.4	15.48%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-50	-1.159e+02	0.0000	467.0	45.38%	51154.3	23.93%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-49	-1.149e+02	0.0000	1024.0	99.51%	187448.4	87.70%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-49	-1.149e+02	0.0000	1026.0	99.71%	188754.4	88.31%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-49	-1.140e+02	0.0000	407.0	39.55%	41487.1	19.41%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-49	-1.131e+02	0.0000	337.0	32.75%	30786.8	14.40%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-49	-1.130e+02	0.0000	1023.0	99.42%	187213.3	87.59%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-48	-1.118e+02	0.0000	385.0	37.41%	38326.6	17.93%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-48	-1.118e+02	0.0000	337.0	32.75%	30969.5	14.49%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-47	-1.092e+02	0.0000	329.0	31.97%	30149.5	14.11%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-45	-1.046e+02	0.0000	398.0	38.68%	41591.3	19.46%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-45	-1.040e+02	0.0000	358.0	34.79%	35325.7	16.53%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-45	-1.039e+02	0.0000	288.0	27.99%	24929.6	11.66%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-45	-1.037e+02	0.0000	1027.0	99.81%	191586.2	89.64%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-44	-1.034e+02	0.0000	285.0	27.70%	24567.8	11.49%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-44	-1.032e+02	0.0000	406.0	39.46%	43131.8	20.18%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-44	-1.015e+02	0.0000	335.0	32.56%	32162.3	15.05%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-43	-1.002e+02	0.0000	1019.0	99.03%	187476.4	87.72%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-43	-9.988e+01	0.0000	356.0	34.60%	35662.7	16.69%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-43	-9.960e+01	0.0000	333.0	32.36%	32152.7	15.04%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-42	-9.894e+01	0.0000	379.0	36.83%	39469.1	18.47%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-42	-9.893e+01	0.0000	249.0	24.20%	20158.1	9.43%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-42	-9.850e+01	0.0000	309.0	30.03%	28709.9	13.43%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-42	-9.825e+01	0.0000	327.0	31.78%	31445.3	14.71%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-42	-9.767e+01	0.0000	366.0	35.57%	37602.3	17.59%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-42	-9.673e+01	0.0000	357.0	34.69%	36331.1	17.00%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-41	-9.659e+01	0.0000	382.0	37.12%	40358.7	18.88%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-41	-9.622e+01	0.0000	422.0	41.01%	47057.8	22.02%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-41	-9.502e+01	0.0000	328.0	31.88%	32096.2	15.02%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-40	-9.410e+01	0.0000	325.0	31.58%	31782.0	14.87%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-40	-9.313e+01	0.0000	340.0	33.04%	34255.0	16.03%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-40	-9.241e+01	0.0000	294.0	28.57%	27381.4	12.81%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-39	-9.012e+01	0.0000	236.0	22.93%	19476.3	9.11%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-38	-8.864e+01	0.0000	357.0	34.69%	37711.1	17.64%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-38	-8.836e+01	0.0000	1026.0	99.71%	193831.3	90.69%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-37	-8.698e+01	0.0000	275.0	26.72%	25390.2	11.88%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-37	-8.648e+01	0.0000	279.0	27.11%	26049.6	12.19%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-37	-8.622e+01	0.0000	251.0	24.39%	22057.5	10.32%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-37	-8.606e+01	0.0000	221.0	21.48%	17958.8	8.40%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-36	-8.433e+01	0.0000	288.0	27.99%	27711.0	12.97%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-36	-8.410e+01	0.0000	273.0	26.53%	25522.7	11.94%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-36	-8.388e+01	0.0000	300.0	29.15%	29593.6	13.85%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-36	-8.318e+01	0.0000	157.0	15.26%	10255.1	4.80%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-35	-8.273e+01	0.0000	278.0	27.02%	26467.8	12.38%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-35	-8.264e+01	0.0000	254.0	24.68%	22981.9	10.75%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-35	-8.214e+01	0.0000	292.0	28.38%	28658.5	13.41%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-34	-8.017e+01	0.0000	290.0	28.18%	28673.8	13.42%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-33	-7.824e+01	0.0000	313.0	30.42%	32552.7	15.23%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-33	-7.750e+01	0.0000	247.0	24.00%	22719.1	10.63%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-32	-7.521e+01	0.0000	341.0	33.14%	37595.8	17.59%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-32	-7.494e+01	0.0000	90.0	8.75%	3920.1	1.83%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-32	-7.464e+01	0.0000	223.0	21.67%	19717.8	9.23%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-31	-7.353e+01	0.0000	118.0	11.47%	6740.7	3.15%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-31	-7.320e+01	0.0000	170.0	16.52%	12828.4	6.00%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-31	-7.319e+01	0.0000	236.0	22.93%	21771.7	10.19%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-31	-7.243e+01	0.0000	250.0	24.30%	23925.8	11.19%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-30	-7.115e+01	0.0000	181.0	17.59%	14479.9	6.77%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-30	-7.048e+01	0.0000	303.0	29.45%	32377.6	15.15%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-29	-6.739e+01	0.0000	282.0	27.41%	29639.2	13.87%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-29	-6.737e+01	0.0000	237.0	23.03%	22811.4	10.67%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-29	-6.717e+01	0.0000	143.0	13.90%	10137.9	4.74%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-29	-6.714e+01	0.0000	283.0	27.50%	29842.1	13.96%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-28	-6.603e+01	0.0000	212.0	20.60%	19401.8	9.08%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-28	-6.564e+01	0.0000	217.0	21.09%	20173.6	9.44%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-28	-6.533e+01	0.0000	215.0	20.89%	19933.1	9.33%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-28	-6.498e+01	0.0000	235.0	22.84%	22902.6	10.72%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-27	-6.309e+01	0.0000	196.0	19.05%	17574.6	8.22%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-27	-6.309e+01	0.0000	196.0	19.05%	17574.6	8.22%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-27	-6.298e+01	0.0000	219.0	21.28%	20874.9	9.77%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-27	-6.227e+01	0.0000	173.0	16.81%	14534.9	6.80%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-27	-6.226e+01	0.0000	253.0	24.59%	26079.7	12.20%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-26	-6.170e+01	0.0000	192.0	18.66%	17214.2	8.05%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-26	-6.142e+01	0.0000	1027.0	99.81%	199812.8	93.49%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-26	-6.089e+01	0.0000	251.0	24.39%	26018.2	12.17%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-25	-5.907e+01	0.0000	180.0	17.49%	15924.0	7.45%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-25	-5.849e+01	0.0000	206.0	20.02%	19697.5	9.22%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-25	-5.792e+01	0.0000	163.0	15.84%	13768.0	6.44%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-24	-5.744e+01	0.0000	229.0	22.25%	23283.1	10.89%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-24	-5.651e+01	0.0000	137.0	13.31%	10554.6	4.94%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-23	-5.515e+01	0.0000	204.0	19.83%	19951.2	9.33%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-23	-5.439e+01	0.0000	246.0	23.91%	26461.7	12.38%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-23	-5.378e+01	0.0000	276.0	26.82%	31360.0	14.67%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-23	-5.354e+01	0.0000	225.0	21.87%	23378.5	10.94%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-22	-5.244e+01	0.0000	162.0	15.74%	14387.1	6.73%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-22	-5.163e+01	0.0000	150.0	14.58%	12866.4	6.02%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-22	-5.076e+01	0.0000	180.0	17.49%	17179.6	8.04%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-21	-5.018e+01	0.0000	162.0	15.74%	14717.4	6.89%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-21	-5.006e+01	0.0000	255.0	24.78%	28765.1	13.46%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-21	-4.938e+01	0.0000	168.0	16.33%	15683.1	7.34%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-19	-4.508e+01	0.0000	169.0	16.42%	16526.4	7.73%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-19	-4.469e+01	0.0000	138.0	13.41%	12211.7	5.71%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-19	-4.409e+01	0.0000	142.0	13.80%	12849.5	6.01%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-17	-4.106e+01	0.0000	184.0	17.88%	19489.5	9.12%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-17	-4.082e+01	0.0000	117.0	11.37%	9926.1	4.64%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-17	-4.053e+01	0.0000	109.0	10.59%	8916.6	4.17%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-17	-4.005e+01	0.0000	112.0	10.88%	9369.2	4.38%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-16	-3.902e+01	0.0000	114.0	11.08%	9773.8	4.57%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-16	-3.746e+01	0.0000	144.0	13.99%	14200.0	6.64%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-16	-3.701e+01	0.0000	138.0	13.41%	13411.5	6.27%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-15	-3.663e+01	0.0000	183.0	17.78%	20235.1	9.47%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-15	-3.624e+01	0.0000	92.0	8.94%	7275.6	3.40%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-15	-3.619e+01	0.0000	153.0	14.87%	15752.9	7.37%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-15	-3.473e+01	0.0000	131.0	12.73%	12794.3	5.99%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-15	-3.473e+01	0.0000	131.0	12.73%	12794.3	5.99%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-15	-3.468e+01	0.0000	84.0	8.16%	6458.4	3.02%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-14	-3.429e+01	0.0000	87.0	8.45%	6880.9	3.22%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-14	-3.396e+01	0.0000	95.0	9.23%	7953.0	3.72%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-14	-3.357e+01	0.0000	125.0	12.15%	12130.6	5.68%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-12	-2.949e+01	0.0000	111.0	10.79%	10826.8	5.07%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-12	-2.910e+01	0.0000	102.0	9.91%	9618.3	4.50%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-12	-2.873e+01	0.0000	101.0	9.82%	9538.2	4.46%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-12	-2.785e+01	0.0000	96.0	9.33%	8983.8	4.20%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-11	-2.699e+01	0.0000	100.0	9.72%	9687.6	4.53%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-11	-2.608e+01	0.0000	85.0	8.26%	7743.3	3.62%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-11	-2.579e+01	0.0000	78.0	7.58%	6839.8	3.20%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-11	-2.568e+01	0.0000	117.0	11.37%	12414.3	5.81%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-10	-2.491e+01	0.0000	75.0	7.29%	6565.1	3.07%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-10	-2.420e+01	0.0000	106.0	10.30%	11069.7	5.18%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-10	-2.390e+01	0.0000	68.0	6.61%	5782.5	2.71%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-8	-2.024e+01	0.0000	84.0	8.16%	8600.5	4.02%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-8	-2.003e+01	0.0000	85.0	8.26%	8786.6	4.11%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-8	-2.001e+01	0.0000	68.0	6.61%	6363.7	2.98%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-8	-1.954e+01	0.0000	46.0	4.47%	3538.3	1.66%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-8	-1.921e+01	0.0000	71.0	6.90%	6918.7	3.24%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-8	-1.900e+01	0.0000	50.0	4.86%	4107.9	1.92%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-8	-1.879e+01	0.0000	55.0	5.34%	4788.5	2.24%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-8	-1.865e+01	0.0000	48.0	4.66%	3898.2	1.82%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-7	-1.789e+01	0.0000	51.0	4.96%	4388.2	2.05%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-6	-1.591e+01	0.0000	23.0	2.24%	1271.2	0.59%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.412e+01	0.0000	61.0	5.93%	6424.2	3.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-5	-1.203e+01	0.0000	33.0	3.21%	2851.0	1.33%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-4	-1.126e+01	0.0000	36.0	3.50%	3370.0	1.58%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.048e+01	0.0000	20.0	1.94%	1414.6	0.66%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-3	-8.741e+00	0.0002	23.0	2.24%	1999.1	0.94%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-2	-6.406e+00	0.0017	13.0	1.26%	1018.4	0.48%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-2	-6.342e+00	0.0018	17.0	1.65%	1548.3	0.72%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-5.988e+00	0.0025	28.0	2.72%	3221.0	1.51%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-4.240e+00	0.0145	6.0	0.58%	403.7	0.19%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.472e+00	0.0312	20.0	1.94%	2609.0	1.22%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.899e-01	0.3725	11.0	1.07%	2002.7	0.94%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.911e-01	0.5010	5.0	0.49%	971.0	0.45%