Information for 4-AAGCGATT (Motif 9)

C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T
Reverse Opposite:
C G T A C G T A A C G T A G T C A C T G G T A C A C G T A C G T
p-value:1e-130
log p-value:-3.016e+02
Information Content per bp:1.958
Number of Target Sequences with motif910.0
Percentage of Target Sequences with motif88.44%
Number of Background Sequences with motif113359.4
Percentage of Background Sequences with motif53.04%
Average Position of motif in Targets2599.5 +/- 2318.3bp
Average Position of motif in Background1776.9 +/- 3092.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)3.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX7/MA0680.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AAGCGATT-
TAATCGATTA
 A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T
C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A

PAX3/MA0780.1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AAGCGATT-
TAATCGATTA
 A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T
C G A T T C G A G T C A A G C T A G T C T C A G C T G A A C G T G A C T G C T A

PH0044.1_Homez/Jaspar

Match Rank:3
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----AAGCGATT----
NNTAAAAACGATGTTNT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T A C G T A C G T A C G T
G A T C G A C T C G A T T C G A C G T A C G T A G C T A G C T A A G T C C A T G C G T A C G A T A C T G C G A T C G A T C G A T G C A T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AAGCGATT--
-ACCGATTAG
 C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T A C G T
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

PB0135.1_Hoxa3_2/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AAGCGATT----
AAAAACCATTAAGG
 A C G T A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T A C G T A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

CUX2/MA0755.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAGCGATT-
TAATCGATAA
 A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T
G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

CUX1/MA0754.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAGCGATT-
TAATCGATAA
 A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T
G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

Hmx3/MA0898.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAGCGATT-------
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAGCGATT-------
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAGCGATT-------
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A C G T A A C T G A G T C A C T G C G T A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T