Information for 14-TCCATCCATCCA (Motif 21)

A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A
Reverse Opposite:
A C G T A C T G T C A G C T G A A C G T C T A G C T A G C T G A A G C T C T A G T C A G C G T A
p-value:1e-98
log p-value:-2.276e+02
Information Content per bp:1.900
Number of Target Sequences with motif822.0
Percentage of Target Sequences with motif79.88%
Number of Background Sequences with motif102229.7
Percentage of Background Sequences with motif47.83%
Average Position of motif in Targets2772.1 +/- 2493.8bp
Average Position of motif in Background1911.9 +/- 3766.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)2.58
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TCCATCCATCCA
-YCATCMATCA-
 A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A
A C G T G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCCATCCATCCA----
NNCATTCATTCATNNN
 A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCCATCCATCCA------
-TCACCCATCAATAAACA
 A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCCATCCATCCA
GYCATCMATCAT
 A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCCATCCATCCA-
-CCATCAATCAAA
 A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A A C G T
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

ZNF24/MA1124.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCCATCCATCCA---
--CATTCATTCATTC
 A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A A C G T A C G T A C G T
A C G T A C G T G A T C T C G A G A C T A G C T G A T C T C G A A G C T A G C T G A T C T C G A G A C T A G C T G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCCATCCATCCA
-TCATCAATCA-
 A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCCATCCATCCA--
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCCATCCATCCA----
-SCAGYCADGCATGAC
 A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:10
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------TCCATCCATCCA
CCTTCCTTCCTTCCTTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G T C A G T C G T C A A G C T A G T C G T A C C G T A
A G T C G A T C G A C T C A G T A T G C A G T C A C G T A C G T A T G C G T A C A G C T A G C T G A T C A G T C A G C T A G C T A G T C A G T C A C G T