/ | / \ . / |. \\\ / |. \\\ / `|. \\\ / |. \ / |\ \\#####\ / || ==###########> / || \\##==......\ / || ______ = =|__ /__ || \\\ ,--' ,----`-,__ ___/' --,-`-===================##========> \ ' ##_______ _____ ,--,__,=##,__ /// , __== ___,-,__,--'#' ===' `-' | ##,-/ -,____,---' \\####\\________________,--\\_##,/ ___ .______ ______ __ __ .______ / \ | _ \ / || | | | | _ \ / ^ \ | |_) | | ,----'| |__| | | |_) | / /_\ \ | / | | | __ | | / / _____ \ | |\ \\___ | `----.| | | | | |\ \\___. /__/ \__\ | _| `._____| \______||__| |__| | _| `._____| ArchR : Version 1.0.2 For more information see our website : www.ArchRProject.com If you encounter a bug please report : https://github.com/GreenleafLab/ArchR/issues Loading Required Packages... Loading Package : grid v4.2.2 Loading Package : gridExtra v2.3 Loading Package : gtools v3.9.4 Loading Package : gtable v0.3.1 Loading Package : ggplot2 v3.3.6 Loading Package : magrittr v2.0.3 Loading Package : plyr v1.8.8 Loading Package : stringr v1.5.0 Loading Package : data.table v1.14.6 Loading Package : matrixStats v0.63.0 Loading Package : S4Vectors v0.36.1 Loading Package : GenomicRanges v1.50.2 Loading Package : BiocGenerics v0.44.0 Loading Package : Matrix v1.5.3 Loading Package : Rcpp v1.0.9 Loading Package : SummarizedExperiment v1.28.0 Loading Package : rhdf5 v2.42.0 here() starts at /projects/pfenninggroup/singleCell/BICCN_mouse_CATlas_snATAC-seq Attaching package: ‘here’ The following object is masked from ‘package:plyr’: here Setting default number of Parallel threads to 8. Setting default genome to Mm10. Successfully loaded ArchRProject! / | / \ . / |. \\\ / |. \\\ / `|. \\\ / |. \ / |\ \\#####\ / || ==###########> / || \\##==......\ / || ______ = =|__ /__ || \\\ ,--' ,----`-,__ ___/' --,-`-===================##========> \ ' ##_______ _____ ,--,__,=##,__ /// , __== ___,-,__,--'#' ===' `-' | ##,-/ -,____,---' \\####\\________________,--\\_##,/ ___ .______ ______ __ __ .______ / \ | _ \ / || | | | | _ \ / ^ \ | |_) | | ,----'| |__| | | |_) | / /_\ \ | / | | | __ | | / / _____ \ | |\ \\___ | `----.| | | | | |\ \\___. /__/ \__\ | _| `._____| \______||__| |__| | _| `._____| Checking Inputs... ArchR logging to : ArchRLogs/ArchR-addIterativeLSI-24cfd3797c17c-Date-2023-04-25_Time-16-37-10.log If there is an issue, please report to github with logFile! Error in .availableSeqnames(ArrowFiles, subGroup = useMatrix) : Not All Seqnames Identical! Calls: addIterativeLSI -> .availableSeqnames In addition: Warning message: In mccollect(jobs) : 1 parallel job did not deliver a result Execution halted slurmstepd: error: Detected 2 oom-kill event(s) in step 3425661.batch cgroup. Some of your processes may have been killed by the cgroup out-of-memory handler.